BLASTX nr result
ID: Rehmannia25_contig00024029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00024029
(618 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc... 49 1e-10
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 47 2e-09
gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japoni... 49 7e-09
ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group] g... 45 1e-08
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 44 1e-08
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 43 2e-08
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera] 48 2e-08
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 45 2e-08
emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera] 50 3e-08
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 45 4e-08
ref|XP_004966914.1| PREDICTED: uncharacterized protein LOC101760... 45 7e-08
gb|EMT21953.1| ABC transporter C family member 10 [Aegilops taus... 44 8e-08
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [... 44 1e-07
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 42 1e-07
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 44 1e-07
gb|AAV44026.1| hypothetical protein [Oryza sativa Japonica Group] 44 1e-07
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 42 2e-07
ref|XP_004986574.1| PREDICTED: uncharacterized protein LOC101771... 44 2e-07
emb|CAE76054.1| B1248C03.13 [Oryza sativa Japonica Group] 49 2e-07
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 42 2e-07
>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2074
Score = 48.5 bits (114), Expect(2) = 1e-10
Identities = 32/79 (40%), Positives = 38/79 (48%)
Frame = -2
Query: 614 NLTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSN 435
N+ T G RG GRG + GRGR GN G G RFS R+ CQ+
Sbjct: 1202 NVNTGNTGAFRGRGGGRGD-----RGGRGR-----GN--GGGARFSNKPRSTCQLCGKIG 1249
Query: 434 HKAEKCYYRFDMNFAPASK 378
H C+YR+D NF P SK
Sbjct: 1250 HVVADCWYRYDENFIPDSK 1268
Score = 43.5 bits (101), Expect(2) = 1e-10
Identities = 25/65 (38%), Positives = 34/65 (52%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKSGTYKPKTYVVVSN 98
WY D+GAT+H+T +L L Y G +I T SGAG + S + P + + N
Sbjct: 1281 WYMDTGATDHITGELDKLTTHEKYNGKEQIHTASGAGM-DIKHVGHSIIHTPICNIQLKN 1339
Query: 97 SLHVP 83
LHVP
Sbjct: 1340 ILHVP 1344
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 47.0 bits (110), Expect(2) = 2e-09
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Frame = -2
Query: 617 ANLTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAG-RYGNFRGKGRRFSYN--------NR 465
AN + +G G GRG F GRGR G G F+ GR +Y+ +R
Sbjct: 225 ANARSPGRGMSWGRSGGRG-----FSRGRGRGRGPSRGGFQSFGRGNNYSGATDADTSSR 279
Query: 464 ARCQI*NYSNHKAEKCYYRFDMNFAP 387
RCQ+ + H A C+YRFD N+ P
Sbjct: 280 PRCQVCSRVGHTALNCWYRFDENYVP 305
Score = 41.2 bits (95), Expect(2) = 2e-09
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = -3
Query: 319 SFGSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSK 140
S S +N + WY D+GAT+H+T DL L + Y G +I +G G +T S
Sbjct: 309 SANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTG----MTISN 364
Query: 139 SGTYKPKT---YVVVSNSLHVPCSMQEALTI 56
G T + + + LHVP + + +++
Sbjct: 365 IGNAIVPTSSRSLHLRSVLHVPSTHKNLISV 395
>gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 461
Score = 48.5 bits (114), Expect(2) = 7e-09
Identities = 32/79 (40%), Positives = 38/79 (48%)
Frame = -2
Query: 614 NLTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSN 435
N+ T G RG GRG + GRGR GN G G RFS R+ CQ+
Sbjct: 123 NVNTGNTGAFRGRGGGRGD-----RGGRGR-----GN--GGGARFSNKPRSTCQLCGKIG 170
Query: 434 HKAEKCYYRFDMNFAPASK 378
H C+YR+D NF P SK
Sbjct: 171 HVVADCWYRYDENFIPDSK 189
Score = 37.7 bits (86), Expect(2) = 7e-09
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGA 170
WY D+GAT+H+T +L L Y G +I T SGA
Sbjct: 202 WYMDTGATDHITGELDKLTTHEKYNGKEQIHTASGA 237
>ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group]
gi|113531414|dbj|BAF03797.1| Os01g0123000 [Oryza sativa
Japonica Group] gi|215741345|dbj|BAG97840.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 360
Score = 45.4 bits (106), Expect(2) = 1e-08
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = -2
Query: 617 ANLTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYS 438
AN T+G G GRG + GRG + GR N G+G +NR CQ+ N
Sbjct: 230 ANRNNVTRGGRGGMPRGRGG---RGGGGRGGNGGRGNNGGGRG-----DNRPTCQVCNKR 281
Query: 437 NHKAEKCYYRFDMNFAPASK 378
H A C++RFD + P K
Sbjct: 282 GHVASDCWHRFDETYVPDEK 301
Score = 40.0 bits (92), Expect(2) = 1e-08
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAG 167
WY D+GAT+H+T L L YQG +I T SG G
Sbjct: 316 WYVDTGATDHITSQLDKLTTKEKYQGTDQIHTASGEG 352
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 44.3 bits (103), Expect(2) = 1e-08
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = -3
Query: 328 NVASFGSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAG 167
NVA+ +V N WY DSGAT+H+T +L L + Y GN ++ T SG+G
Sbjct: 223 NVAASSYEVDTN-----WYIDSGATDHITSELDKLTVKDKYAGNDQVHTASGSG 271
Score = 40.8 bits (94), Expect(2) = 1e-08
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -2
Query: 542 QNGRGRSAGRYGNFRGKGR----RFSYNNRARCQI*NYSNHKAEKCYYRFDMNFAPASKQ 375
+NG G G RG GR F+ NNR CQ+ H KC+ RFD +F K
Sbjct: 162 RNGDANRGGHGGFGRGGGRGDDGSFNNNNRPTCQLCGKIGHTVHKCWKRFDASFTGEDKS 221
Query: 374 QQLSTIS 354
++ S
Sbjct: 222 ANVAASS 228
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 42.7 bits (99), Expect(2) = 2e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = -3
Query: 295 NSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKSGTYKPKT 116
++++ WY D+GAT+H+T +L L Y+G+ +I T SG+G + S + P
Sbjct: 445 HARDSNWYVDTGATDHITSELEKLTARDVYKGHDQIHTASGSGME-IKHIGHSIVHTPTR 503
Query: 115 YVVVSNSLHVP 83
+ ++N LHVP
Sbjct: 504 PLHLNNVLHVP 514
Score = 42.0 bits (97), Expect(2) = 2e-08
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = -2
Query: 536 GRGRSAGRYGNFRGKGR-----RFSYNNRARCQI*NYSNHKAEKCYYRFDMNFAPASK 378
GRG + GR G G+GR + SY+NR CQ+ H A C++RFD +F P K
Sbjct: 380 GRGATRGR-GAAPGRGRGNNQQQRSYDNRPLCQVCYKRGHVAADCWHRFDEDFVPDDK 436
>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
Length = 1432
Score = 47.8 bits (112), Expect(2) = 2e-08
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = -3
Query: 343 NSHRVNVASFGSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGT 164
N ++ N+ + + + N + WY DSGA++HLT +LGNL Y G ++ T G G
Sbjct: 323 NGNQNNIPAMVASASNNPADESWYLDSGASHHLTQNLGNLTSTSPYTGTDKV--TIGNGK 380
Query: 163 HPMVTRSKSGTYKPKTYVV-VSNSLHVPCSMQEALTIPEWMKAMKIEYNALIK 8
H ++ S T+ + HVP +++ ++ E NALI+
Sbjct: 381 HLSISNIGSKQLHSHTHSFRLKKVFHVPFISANLISVAKFCS----ENNALIE 429
Score = 36.6 bits (83), Expect(2) = 2e-08
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = -2
Query: 584 RGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSNHKAEKCYYRF 405
RG Y Y ++ GRGR GR G +G + S + + +CQ+ H A+ CY+RF
Sbjct: 251 RGQGYSPNNNNYTYR-GRGRG-GRNG--QGGRQNSSPSEKPQCQLCGKFGHTAQICYHRF 306
Query: 404 DMNF 393
D++F
Sbjct: 307 DISF 310
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 45.1 bits (105), Expect(2) = 2e-08
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = -3
Query: 289 QEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAG--THPMVTRSKSGTYKPKT 116
Q+ WYPDSGAT+HLT +L NL + + + +G G H + S S ++ P
Sbjct: 349 QDNNWYPDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSK 408
Query: 115 YVVVSNSLHVPCSMQEALTIPEW 47
+ + LHVP + L++ ++
Sbjct: 409 TLALKQLLHVPEITKNLLSVSKF 431
Score = 39.3 bits (90), Expect(2) = 2e-08
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = -2
Query: 542 QNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSNHKAEKCYYRFDMNFAPASKQQ 372
Q GRGR GR G+++G NN+ +CQ+ H +CYYRFD +F S+ Q
Sbjct: 267 QQGRGRH-GR-GSWKG-------NNKPQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQ 314
>emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]
Length = 1124
Score = 50.4 bits (119), Expect(2) = 3e-08
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Frame = -3
Query: 352 GTVNSH-RVNVASFGSQVTENSQEIY----------WYPDSGATNHLTYDLGNLNLVVDY 206
G+++S VN+ + +Q ++ E+ W+PDSGATNH+T+DLGNLN +Y
Sbjct: 296 GSISSAGNVNLTEYDAQEDQDCSEMVATPKDLQNCCWFPDSGATNHVTHDLGNLNFGXEY 355
Query: 205 QGN*RIQTTSGAGTHPMVTRSKSGTYKPKTYVVVSNSLHVPCSMQEA 65
N ++Q +H +V K + VS SL +P S ++
Sbjct: 356 --NDKLQKPVQTVSHSIVGLPCIPLVKNLEPISVSPSLSLPTSSAQS 400
Score = 33.5 bits (75), Expect(2) = 3e-08
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 515 RYGNFRGKGR-RFSYNNRARCQI*NYSNHKAEKCYYRFDMNF 393
+Y N RG+GR R + +CQ+ N H C+YR+D NF
Sbjct: 232 QYSN-RGRGRGRAQGGIKPQCQLSNKFGHTIHHCFYRYDPNF 272
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 45.4 bits (106), Expect(2) = 4e-08
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = -2
Query: 614 NLTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNF-RGKGRRFSYNNRARCQI*NYS 438
N + QGR GN GRG G G S GR G RG GR + +NR CQ+ +
Sbjct: 226 NRGSGNQGRGGGNPRGRGT-----GRGGGGSGGRGGGHGRGNGRGGT-DNRPTCQVCHKK 279
Query: 437 NHKAEKCYYRFDMNFAPASK 378
H C++R+D N+ P K
Sbjct: 280 GHVVADCWHRYDENYVPDEK 299
Score = 38.1 bits (87), Expect(2) = 4e-08
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKSGTYKPKTY--VVV 104
WY D+ AT+H+T L L Y+G +I T SG G M + +Y P + + +
Sbjct: 314 WYVDTEATDHITGQLDKLTTREKYKGTDQIHTASGEG---MDIQHIGHSYVPTSSRPLHL 370
Query: 103 SNSLHVPCSMQEALTI 56
N LHVP + + +++
Sbjct: 371 KNILHVPKASKNLISV 386
>ref|XP_004966914.1| PREDICTED: uncharacterized protein LOC101760556 [Setaria italica]
Length = 373
Score = 45.1 bits (105), Expect(2) = 7e-08
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = -2
Query: 590 RVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNN--------RARCQI*NYSN 435
R RG+ +GRG G GR +GR+G RG + S NN + +CQI
Sbjct: 225 RGRGSNHGRGN------RGGGRDSGRFGQGRGGQNQGSNNNSSVGSSKKKVQCQICKKVG 278
Query: 434 HKAEKCYYRFD 402
H+A +C+YR+D
Sbjct: 279 HEAPRCWYRYD 289
Score = 37.7 bits (86), Expect(2) = 7e-08
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 313 GSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTH 161
G+ T + WY DSGAT+H+T +L L + Y G ++ T S + H
Sbjct: 300 GTVETGYGYDTNWYVDSGATDHVTSELEKLTVRDKYTGQDQVHTASSSDMH 350
>gb|EMT21953.1| ABC transporter C family member 10 [Aegilops tauschii]
Length = 3041
Score = 43.5 bits (101), Expect(2) = 8e-08
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 21/106 (19%)
Frame = -2
Query: 617 ANLTTQTQG----RVRGNIYGRGRLIYQFQNGRGRSAGRYGN-FRGKGRRFSYNNRAR-- 459
AN+ T+ +G R RG + +G+ +G G S G+ GN RG GR S NNR R
Sbjct: 2034 ANIATRGRGGGGSRYRGPPHHKGK-----SSGGGNSGGQNGNNMRGGGRPSSNNNRGRRT 2088
Query: 458 --------------CQI*NYSNHKAEKCYYRFDMNFAPASKQQQLS 363
CQI H A+ C+YRF+ + +S+ ++++
Sbjct: 2089 SSSNSNRSRPDAVRCQICGNLGHSAKDCWYRFEDDDDASSQDEKVA 2134
Score = 38.9 bits (89), Expect(2) = 8e-08
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSG 173
WY DSGATNH+T +L + + Y+G I T SG
Sbjct: 2147 WYVDSGATNHITGELEKVTMREKYRGQDHIHTASG 2181
>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group] gi|31431217|gb|AAP53032.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1042
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKSGTYKPKTYVVVSN 98
WY D+GAT+H+T L LN Y+G+ +I T SGAG + + + P + ++N
Sbjct: 219 WYVDTGATDHITSQLEKLNTREVYKGHDQIHTASGAGM-KIKHIGHAIVHTPTRPLHLNN 277
Query: 97 SLHVP 83
LHVP
Sbjct: 278 VLHVP 282
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -2
Query: 611 LTTQTQGRVRGNIY-GRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNNRARCQI*NYSN 435
L T +G + + Y GRGR + RGR +GR RG ++ + R C +
Sbjct: 132 LITMKKGNLSVSDYVGRGR---NTNSNRGRGSGRG---RGSSQQRGNDGRPLCHVCYKRG 185
Query: 434 HKAEKCYYRFDMNFAPASKQQQLSTIS 354
H A C++R+D ++ P K +T S
Sbjct: 186 HVAANCWHRYDEDYVPDDKLVAAATYS 212
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 42.0 bits (97), Expect(2) = 1e-07
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAG-THPMVTRSKSGTYKPKTYVVVS 101
WYPDSGA+NH+T + NL ++ G ++ +G G + + +S+ + ++++
Sbjct: 369 WYPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSPFSSKPLLLN 428
Query: 100 NSLHVPCSMQEALTIPEWMKAMKI 29
+ LHVP + L++ ++ K K+
Sbjct: 429 HLLHVPSITKNLLSVSKFAKDNKV 452
Score = 39.7 bits (91), Expect(2) = 1e-07
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Frame = -2
Query: 584 RGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSY-----------NNRARCQI*NYS 438
RG YG GR NGR G FRG+G + S+ N + CQ+
Sbjct: 262 RGGFYG-GRGFNWNYNGRSNRGG----FRGRGNKGSFQARPPWNSDNQNEKPACQLCGKI 316
Query: 437 NHKAEKCYYRFDMNF 393
H +CYYRFD F
Sbjct: 317 GHVVAQCYYRFDHTF 331
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 44.3 bits (103), Expect(2) = 1e-07
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKSGTYKPKTYVVVSN 98
WY D+GAT+H+T +L L Y GN +I T SGAG + + + P + ++N
Sbjct: 322 WYIDTGATDHITGELEKLTTKEKYNGNEQIHTASGAGM-DISHIGHTTVHTPSRNIHLNN 380
Query: 97 SLHVP 83
L+VP
Sbjct: 381 VLYVP 385
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 536 GRGRSAGRYGN-FRGKGRRFS-YNNRARCQI*NYSNHKAEKCYYRFDMNFAPASKQQQLS 363
GRG GR G RG+GR + R CQ+ H A C+YRFD ++ K +
Sbjct: 253 GRGAPRGRSGGQARGRGRGLGGQDRRPTCQVCFKRGHTAADCWYRFDEDYVADEKLAAAA 312
Query: 362 TIS 354
T S
Sbjct: 313 TNS 315
>gb|AAV44026.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 760
Score = 43.9 bits (102), Expect(2) = 1e-07
Identities = 31/87 (35%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Frame = -2
Query: 596 QGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGK----GRRFSYNNRA--RCQI*NYSN 435
QG + N RGR Q GRGR G G G+ G R NN+ +CQ+
Sbjct: 149 QGMAQANAAMRGRGGGGGQRGRGRGGGNPGGGGGRDAPQGGRGGANNQEWPKCQLCGKLG 208
Query: 434 HKAEKCYYRFDMNFAPASKQQQLSTIS 354
H KCY RFD +F K +T S
Sbjct: 209 HTVIKCYKRFDTSFTGEEKAANTATTS 235
Score = 37.7 bits (86), Expect(2) = 1e-07
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAG------THPMVTRSKSGTYKPKT 116
WY D+GAT+H+T +L L + Y GN ++ +G G H V S
Sbjct: 242 WYVDTGATDHITGELDKLTVRDKYTGNEQVHAANGTGMEISHIDHATVPISSGN------ 295
Query: 115 YVVVSNSLHVP 83
+V+ N L+VP
Sbjct: 296 -LVLKNVLYVP 305
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078 [Arabidopsis
thaliana]
Length = 1415
Score = 42.4 bits (98), Expect(2) = 2e-07
Identities = 24/94 (25%), Positives = 46/94 (48%)
Frame = -3
Query: 343 NSHRVNVASFGSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGT 164
N+++ + +F + + W+PDS AT H+T L +Y+G+ + G GT
Sbjct: 300 NNYQAEIQAFSTLRVSDDTGKEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLV--GDGT 357
Query: 163 HPMVTRSKSGTYKPKTYVVVSNSLHVPCSMQEAL 62
+ +T + S T K + N + V ++Q++L
Sbjct: 358 YLPITHTGSTTIKSSNGKIPLNEVLVVPNIQKSL 391
Score = 38.9 bits (89), Expect(2) = 2e-07
Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Frame = -2
Query: 542 QNGRGRSA---GRYGNFRGKGRRFSYNN--------RARCQI*NYSNHKAEKCYYRFDMN 396
Q GRGRS GR G + +GR FS + R CQI + H A KCY RFD N
Sbjct: 243 QKGRGRSGQNKGR-GGYSTRGRGFSQHQSSPQVSGPRPVCQICGRTGHTALKCYNRFDNN 301
Query: 395 F 393
+
Sbjct: 302 Y 302
>ref|XP_004986574.1| PREDICTED: uncharacterized protein LOC101771888 [Setaria italica]
Length = 358
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Frame = -2
Query: 602 QTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFSYNN--------RARCQI* 447
Q Q V + GRG +G GR +GR+G RG + S +N + +CQI
Sbjct: 215 QFQSSVNSALRGRGSNRGHGNHGGGRGSGRFGQGRGGQNQGSNSNSSVGSSKKKVQCQIC 274
Query: 446 NYSNHKAEKCYYRFD 402
H+A +C+YR+D
Sbjct: 275 KKVGHEAPRCWYRYD 289
Score = 37.7 bits (86), Expect(2) = 2e-07
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -3
Query: 313 GSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGA 170
G+ T + WY DSGAT+H+T +L L + Y G ++ T SG+
Sbjct: 300 GTVETGYGYDTNWYVDSGATDHVTSELEKLTVRDKYTGRDQVHTASGS 347
>emb|CAE76054.1| B1248C03.13 [Oryza sativa Japonica Group]
Length = 261
Score = 48.9 bits (115), Expect(2) = 2e-07
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = -2
Query: 611 LTTQTQGRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRG--KGRRFSYNN--RARCQI*N 444
L T +G + N GR Q GRGR G G+ RG +G R NN R +CQ+
Sbjct: 132 LATTQKGMAQANAAMPGRGGAGGQRGRGRGGGNLGSGRGTPQGSRGGANNQERPKCQLCG 191
Query: 443 YSNHKAEKCYYRFDMNFAPASKQQQLSTIS 354
H KCY RFD +F K +T S
Sbjct: 192 KLGHTVIKCYKRFDTSFTGEEKAANAATTS 221
Score = 32.3 bits (72), Expect(2) = 2e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 277 WYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTS 176
WY D+GAT+H+T +L L + Y GN ++ +
Sbjct: 228 WYVDTGATDHVTGELDKLTVRDKYTGNEQVHAAN 261
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Frame = -2
Query: 593 GRVRGNIYGRGRLIYQFQNGRGRSAGRYGNFRGKGRRFS--------YNNRARCQI*NYS 438
G+ RG G G GRGR G RG+GR + +NR +CQ+
Sbjct: 234 GQQRGGNTGNG--------GRGRGGNNNGANRGRGRGNNGGARPPGGVDNRPKCQLCYKR 285
Query: 437 NHKAEKCYYRFDMNFAPASK 378
H C+YR+D +F P K
Sbjct: 286 GHTVINCWYRYDEDFVPDEK 305
Score = 39.3 bits (90), Expect(2) = 2e-07
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = -3
Query: 316 FGSQVTENSQEIYWYPDSGATNHLTYDLGNLNLVVDYQGN*RIQTTSGAGTHPMVTRSKS 137
+ T + WY D+ AT+H+T +L L + Y+G ++ T SGAG + S
Sbjct: 306 YAGSATSYGIDTNWYVDTSATDHVTGELDKLTVRDRYKGQDQVHTASGAGME-ISHIGHS 364
Query: 136 GTYKPKTYVVVSNSLHVP 83
P + + N L+VP
Sbjct: 365 TVRTPNRDIHLRNILYVP 382