BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00022149
         (835 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   216   8e-54
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   208   2e-51
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              206   8e-51
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   206   8e-51
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]   192   1e-46
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   191   3e-46
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   191   3e-46
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   184   3e-44
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   182   1e-43
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no...   181   4e-43
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   180   6e-43
gb|EOY15730.1| RNA-dependent RNA polymerase family protein, puta...   175   2e-41
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   174   5e-41
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]           174   5e-41
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   173   8e-41
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            173   8e-41
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   167   3e-39
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ...   167   4e-39
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   167   6e-39
ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Popu...   167   6e-39

>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  216 bits (550), Expect = 8e-54
 Identities = 112/200 (56%), Positives = 145/200 (72%), Gaps = 2/200 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            D+YYDA+DAPK+GNKV +P  L+VD FPH +++    SY S SVLG+IYD V+ FK+E  
Sbjct: 905  DLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQK--KESYHSTSVLGEIYDRVEKFKAEEP 962

Query: 653  PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLL 474
               EI K+S F+V IP+  + +W+ RY NYR EM +ALN+  ESKND A++VIKKYKQLL
Sbjct: 963  AAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLL 1022

Query: 473  YEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLA 297
            YEAPDMEES + +  +Y++A+AIY VTYDYA   G V KCGFAW+VAG+ALC L A   A
Sbjct: 1023 YEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHA 1082

Query: 296  GP-KEKPIVILPSVLRDLLN 240
                +K + + PS+L  LLN
Sbjct: 1083 KEHNQKVMAMSPSILHKLLN 1102


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  208 bits (529), Expect = 2e-51
 Identities = 103/198 (52%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK+G KV +P+ L+ + FPH+ME+G   SY S S+LGQIYD V ++  E +
Sbjct: 817  DIYYDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDL 876

Query: 653  PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLL 474
               EI K+ CF+V IP+  + +W+ RY+ Y+K+M +A+N   E +  + NEVIKKYK LL
Sbjct: 877  CITEISKLPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLL 936

Query: 473  YEAPDMEESPKDSEVIYDEAIAIYHVTYDYA-MGHGVEKCGFAWRVAGSALCSLCAWKLA 297
            Y A + E++ + +E I+DEA+AIYHVTYD A + + +EKCGFAW+VAGSALC + A    
Sbjct: 937  YGAVEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY-- 994

Query: 296  GPKEKPIVILPSVLRDLL 243
              KEK + ILPSVL+++L
Sbjct: 995  -RKEKDLPILPSVLQEIL 1011


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  206 bits (524), Expect = 8e-51
 Identities = 108/200 (54%), Positives = 138/200 (69%), Gaps = 2/200 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E  
Sbjct: 735  DIYYDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQ 792

Query: 653  PQKEIWKMSCFDVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
              KEIW++  F++  +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+
Sbjct: 793  STKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQI 852

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKL 300
            LY A + EESP++ E I+DEA+AIYHVTY++ + G  V  C F WRVAG ALC L   KL
Sbjct: 853  LYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKL 912

Query: 299  AGPKEKPIVILPSVLRDLLN 240
                EK +V +PSVLR + N
Sbjct: 913  G---EKSMVCVPSVLRQVFN 929


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  206 bits (524), Expect = 8e-51
 Identities = 108/200 (54%), Positives = 138/200 (69%), Gaps = 2/200 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E  
Sbjct: 749  DIYYDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQ 806

Query: 653  PQKEIWKMSCFDVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
              KEIW++  F++  +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+
Sbjct: 807  STKEIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQI 866

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKL 300
            LY A + EESP++ E I+DEA+AIYHVTY++ + G  V  C F WRVAG ALC L   KL
Sbjct: 867  LYGAAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKL 926

Query: 299  AGPKEKPIVILPSVLRDLLN 240
                EK +V +PSVLR + N
Sbjct: 927  G---EKSMVCVPSVLRQVFN 943


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score =  192 bits (488), Expect = 1e-46
 Identities = 105/199 (52%), Positives = 131/199 (65%), Gaps = 1/199 (0%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E  
Sbjct: 1018 DIYYDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQ 1075

Query: 653  PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLL 474
              K+          +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+L
Sbjct: 1076 STKDA---------VPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQIL 1126

Query: 473  YEAPDMEESPKDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLA 297
            Y A + EESP+  E I+DEA+AIYHVTY++A+ G  V  C F WRVAG ALC L   KL 
Sbjct: 1127 YGAAEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRALCKLYTVKLG 1186

Query: 296  GPKEKPIVILPSVLRDLLN 240
               EK +V +PSVLR + N
Sbjct: 1187 ---EKSMVCVPSVLRQVFN 1202


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  191 bits (485), Expect = 3e-46
 Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA 657
            DIYYDALDAPK G + + VP  L+ + FPH M +    +YRS S+LG+IYD V+A++   
Sbjct: 682  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMD 741

Query: 656  VPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
            +   ++WK+ CFD  + E+Y+  WK  Y  YRKEM  AL +G+ES ND ANEVI+KYK+ 
Sbjct: 742  LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEF 800

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKL 300
            LYEA +   S +  E I++EA+A+Y V+Y++A   G V  C FAWRVAG ALC+L   K 
Sbjct: 801  LYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKN 860

Query: 299  AGPKEKPIVILPSVLRDLL 243
             G  E+P++  PS L+ +L
Sbjct: 861  QG--ERPMICSPSALKGIL 877


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  191 bits (485), Expect = 3e-46
 Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA 657
            DIYYDALDAPK G + + VP  L+ + FPH M +    +YRS S+LG+IYD V+A++   
Sbjct: 704  DIYYDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMD 763

Query: 656  VPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
            +   ++WK+ CFD  + E+Y+  WK  Y  YRKEM  AL +G+ES ND ANEVI+KYK+ 
Sbjct: 764  LSSNDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEF 822

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKL 300
            LYEA +   S +  E I++EA+A+Y V+Y++A   G V  C FAWRVAG ALC+L   K 
Sbjct: 823  LYEAAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKN 882

Query: 299  AGPKEKPIVILPSVLRDLL 243
             G  E+P++  PS L+ +L
Sbjct: 883  QG--ERPMICSPSALKGIL 899


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  184 bits (468), Expect = 3e-44
 Identities = 97/197 (49%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA 657
            +IYYDALDAPK G K + VP  L+  T PH MERG  +SY S S+LGQI+D    ++ E 
Sbjct: 863  NIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMERG-KNSYVSTSILGQIFDTANMYQEE- 920

Query: 656  VPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
            VP  E+ K+ CF+  +PE     WK  Y+ YRK+M  A+    ++KN AA   IKKYK++
Sbjct: 921  VPNIEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEI 980

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLA 297
            LY A ++E SP+ +E +Y EA+AIY VTYD+AM   V  CGFAW+VAGSAL  L A K  
Sbjct: 981  LYGAEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK-- 1038

Query: 296  GPKEKPIVILPSVLRDL 246
               E+    LPSV+R++
Sbjct: 1039 -HSERSFHCLPSVMREI 1054


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  182 bits (463), Expect = 1e-43
 Identities = 96/198 (48%), Positives = 131/198 (66%), Gaps = 2/198 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA- 657
            DIYYDALDAPK G+KV +PNELR D FPH+MER  +  ++S S+LG IYD V++  +E  
Sbjct: 789  DIYYDALDAPKKGDKVYLPNELRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTTEEP 846

Query: 656  VPQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQ 480
             P  EI K+ CF D P+ E ++E  +  YDNYR EM +A+ +    K+++ANEVI++YKQ
Sbjct: 847  TPSSEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQRYKQ 903

Query: 479  LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
              Y A   E+S K  E +Y +A+ +Y + YDYA+  GV KCGF W+VAG  LC     K 
Sbjct: 904  EFYGAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRFYLMKK 963

Query: 299  AGPKEKPIVILPSVLRDL 246
               +EK +V  PSVL++L
Sbjct: 964  M--QEKSLVCAPSVLKEL 979


>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
          Length = 521

 Score =  181 bits (458), Expect = 4e-43
 Identities = 103/217 (47%), Positives = 134/217 (61%), Gaps = 20/217 (9%)
 Frame = -3

Query: 833 DIYYDALDAPKTGNK-------------------VPVPNELRVDTFPHHMERGLDSSYRS 711
           DIYYDALDAPK G K                   V VP EL+ + FPH+ME+   +S+ S
Sbjct: 309 DIYYDALDAPKQGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHS 366

Query: 710 ISVLGQIYDMVQAFKSEAVPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSG 531
            S+LG IYD V A++ E    KEI+K+  F+V +PE  +  WKA Y +YR +M  AL + 
Sbjct: 367 RSILGWIYDEVDAYQLEDHSNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAK 426

Query: 530 DESKNDAANEVIKKYKQLLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMG-HGVEKCG 354
           D  K +AA EV +KYK+LLY A ++EES K  E IY+EA+AIYHV YDYA+    V  C 
Sbjct: 427 DVGKTEAAEEVKRKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCS 486

Query: 353 FAWRVAGSALCSLCAWKLAGPKEKPIVILPSVLRDLL 243
           FAW +AGSAL  L A+K  G  E+    LPSVL+++L
Sbjct: 487 FAWNIAGSALLKLHAFKKIG--ERAFFCLPSVLKEVL 521


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  180 bits (456), Expect = 6e-43
 Identities = 98/200 (49%), Positives = 136/200 (68%), Gaps = 3/200 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            D+YY+ALDAPK G KV VP EL+ + FPH+MER   +SY+S S+LG IYD V A+++E  
Sbjct: 604  DLYYEALDAPKKGGKVVVPGELKSNLFPHYMERV--NSYKSTSILGLIYDTVNAYQAEDA 661

Query: 653  PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGD-ESKNDAANEVIKKYKQL 477
              KE+ K+  FDV +PE  ++ W+  Y +YR EM+ A+   D +SKN+AA++V++KYK++
Sbjct: 662  SIKEVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEI 721

Query: 476  LY-EAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWK 303
            LY  A D+E S +    I+DEA+AIY VTYD+A+  G V KC FAW+VAGSALC     K
Sbjct: 722  LYGGAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALCKYYMNK 781

Query: 302  LAGPKEKPIVILPSVLRDLL 243
                  + I    SVL+DL+
Sbjct: 782  QGA---RTIEASFSVLKDLV 798


>gb|EOY15730.1| RNA-dependent RNA polymerase family protein, putative isoform 1
           [Theobroma cacao]
          Length = 328

 Score =  175 bits (444), Expect = 2e-41
 Identities = 95/201 (47%), Positives = 133/201 (66%), Gaps = 5/201 (2%)
 Frame = -3

Query: 833 DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
           D+YY++LDAPKTG K+ VP ELR D FPH++ER    S++S S+LG+IYD V+++  E +
Sbjct: 132 DLYYESLDAPKTGKKIEVPRELRADAFPHYLER--QKSFKSASILGKIYDFVKSY-GEEL 188

Query: 653 PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGD----ESKNDAANEVIKKY 486
           P+KE+ K+ CFDV  P+   E W   Y  YR++M + L + D    E ++ AAN V  KY
Sbjct: 189 PRKEVRKLPCFDVGFPQDCREKWTELYKQYREDMTQTLQTLDGKSKELRDVAANAVYNKY 248

Query: 485 KQLLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMG-HGVEKCGFAWRVAGSALCSLCA 309
           KQ LY    +E+  +  + IY EA+AIY+++YDYA+    V KCGFAW+VAGSAL SL A
Sbjct: 249 KQELYGGAVLEQRQRPLDQIYKEALAIYNISYDYAIRIDDVGKCGFAWKVAGSALLSLYA 308

Query: 308 WKLAGPKEKPIVILPSVLRDL 246
              +   EK +   PSVL++L
Sbjct: 309 ---SEQGEKTLSCAPSVLKEL 326


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  174 bits (440), Expect = 5e-41
 Identities = 93/198 (46%), Positives = 131/198 (66%), Gaps = 2/198 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK G+KV +PN+L+ D FPH+MER  D  ++S S+LG I+D V++  +E  
Sbjct: 785  DIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEP 842

Query: 653  -PQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQ 480
             P  EI K+ CF D P+ E +++  +  YDNYR EM +A+ +    K+++ANEVI++YKQ
Sbjct: 843  SPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQ 899

Query: 479  LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
              Y A   E+S K  E +Y +A+A+Y + YDYA+  GV KC F W+VAG  LC     K 
Sbjct: 900  EFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKK 959

Query: 299  AGPKEKPIVILPSVLRDL 246
               +EK +V  PSVL++L
Sbjct: 960  M--QEKCLVCAPSVLKEL 975


>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
          Length = 339

 Score =  174 bits (440), Expect = 5e-41
 Identities = 93/198 (46%), Positives = 131/198 (66%), Gaps = 2/198 (1%)
 Frame = -3

Query: 833 DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
           DIYYDALDAPK G+KV +PN+L+ D FPH+MER  D  ++S S+LG I+D V++  +E  
Sbjct: 147 DIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEP 204

Query: 653 -PQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQ 480
            P  EI K+ CF D P+ E +++  +  YDNYR EM +A+ +    K+++ANEVI++YKQ
Sbjct: 205 SPSSEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQ 261

Query: 479 LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
             Y A   E+S K  E +Y +A+A+Y + YDYA+  GV KC F W+VAG  LC     K 
Sbjct: 262 EFYGAAGFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKK 321

Query: 299 AGPKEKPIVILPSVLRDL 246
              +EK +V  PSVL++L
Sbjct: 322 M--QEKCLVCAPSVLKEL 337


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  173 bits (438), Expect = 8e-41
 Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  
Sbjct: 796  DIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEP 855

Query: 653  PQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQ 480
            P  EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+ K N   NEVI++YKQ
Sbjct: 856  PPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQ 915

Query: 479  LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
              Y A   E+S K  E +Y +A+A+Y+V YDYA+  GV KC FAW VAG  LC    + L
Sbjct: 916  DFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYL 972

Query: 299  AGPKEKPIVILPSVLRDLL 243
               K+K +V   SVL+ LL
Sbjct: 973  KKTKDKSVVASTSVLKKLL 991


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  173 bits (438), Expect = 8e-41
 Identities = 92/199 (46%), Positives = 127/199 (63%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  
Sbjct: 770  DIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEP 829

Query: 653  PQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQ 480
            P  EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+ K N   NEVI++YKQ
Sbjct: 830  PPSEISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQ 889

Query: 479  LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
              Y A   E+S K  E +Y +A+A+Y+V YDYA+  GV KC FAW VAG  LC    + L
Sbjct: 890  DFYGAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYL 946

Query: 299  AGPKEKPIVILPSVLRDLL 243
               K+K +V   SVL+ LL
Sbjct: 947  KKTKDKSVVASTSVLKKLL 965


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  167 bits (424), Expect = 3e-39
 Identities = 94/199 (47%), Positives = 132/199 (66%), Gaps = 3/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYY+ALDAPK+G KV VPN+L  + FPH+ME+  D S+ S S+LG IYD V+ +    +
Sbjct: 793  DIYYEALDAPKSGRKVQVPNDLIAELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDM 850

Query: 653  PQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQL 477
               EIWK+ CFDV +P   +E WK +Y+ YRK+M  ALN  D+SK ++ A EV +KYK+ 
Sbjct: 851  VG-EIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEE 909

Query: 476  LY-EAPDMEESPKDSEVIYDEAIAIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWK 303
             Y    +ME   K    I++EA+A+Y+V+Y+YAM    V++CGFAW++AGSAL  L   K
Sbjct: 910  FYGPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIK 969

Query: 302  LAGPKEKPIVILPSVLRDL 246
                 EK +   PSV+R++
Sbjct: 970  ---QNEKALNCDPSVVREI 985


>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 934

 Score =  167 bits (423), Expect = 4e-39
 Identities = 87/198 (43%), Positives = 125/198 (63%), Gaps = 2/198 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV 654
            DIYYDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  
Sbjct: 738  DIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEP 797

Query: 653  PQKEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDE-SKNDAANEVIKKYKQ 480
            P  EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+  K   ANEVI++YKQ
Sbjct: 798  PPSEISKLWYFEDEPVPKSHMDKFTSWYENYRAEMSQAMEETDKVKKKQLANEVIQRYKQ 857

Query: 479  LLYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKL 300
              Y A   E+S K  E +Y +A+A+Y++ YD+A   GV KC F W+VAG     LC + L
Sbjct: 858  DFYGAARFEDSNKSLEELYPQALALYNIVYDFAFPEGVSKCAFVWKVAGPV---LCRFYL 914

Query: 299  AGPKEKPIVILPSVLRDL 246
               +EK +V   SVL+ +
Sbjct: 915  KKTQEKLVVASTSVLKKI 932


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  167 bits (422), Expect = 6e-39
 Identities = 93/199 (46%), Positives = 125/199 (62%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833  DIYYDALDAPKTGN-KVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA 657
            DIYYDALDAPK G  K+ VP  L+ + FPH ME+    +YRS S+LG+IYD V+A++   
Sbjct: 682  DIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMD 741

Query: 656  VPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
            +              + E  +  WK  Y  YR EM  AL +G E KN+ ANEVIKKYK++
Sbjct: 742  LSSN-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEI 789

Query: 476  LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKL 300
            LYEA +   S +  E I++EA A+Y VTY++A   G V KCGFAWRVAG ALC+L  + L
Sbjct: 790  LYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVL 847

Query: 299  AGPKEKPIVILPSVLRDLL 243
               +E+P++  PS L+ +L
Sbjct: 848  KNQEERPLICSPSALKGIL 866


>ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
          Length = 211

 Score =  167 bits (422), Expect = 6e-39
 Identities = 93/199 (46%), Positives = 125/199 (62%), Gaps = 2/199 (1%)
 Frame = -3

Query: 833 DIYYDALDAPKTGN-KVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA 657
           DIYYDALDAPK G  K+ VP  L+ + FPH ME+    +YRS S+LG+IYD V+A++   
Sbjct: 27  DIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMD 86

Query: 656 VPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQL 477
           +              + E  +  WK  Y  YR EM  AL +G E KN+ ANEVIKKYK++
Sbjct: 87  LSSN-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEI 134

Query: 476 LYEAPDMEESPKDSEVIYDEAIAIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKL 300
           LYEA +   S +  E I++EA A+Y VTY++A   G V KCGFAWRVAG ALC+L  + L
Sbjct: 135 LYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVL 192

Query: 299 AGPKEKPIVILPSVLRDLL 243
              +E+P++  PS L+ +L
Sbjct: 193 KNQEERPLICSPSALKGIL 211