BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00020720
         (1878 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   374   e-153
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   365   e-149
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   349   e-147
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              349   e-147
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   343   e-143
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   343   e-143
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu...   318   e-136
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   331   e-136
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr...   306   e-136
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr...   306   e-136
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   322   e-134
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   309   e-133
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   304   e-132
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   326   e-131
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   309   e-129
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A...   316   e-128
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr...   296   e-128
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   301   e-126
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            301   e-126
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme...   281   e-125

>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  374 bits (959), Expect(2) = e-153
 Identities = 185/351 (52%), Positives = 247/351 (70%), Gaps = 1/351 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYRNPG+HFGDVH+M+A YV+E+ +VVG+AKYGIFFSTKG RSAA E+A GDFDGDM
Sbjct: 662  RVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDM 721

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXRPSFDMA 995
            YW+S N +L+  +  + PW R++S P++  + P EFS                    +M+
Sbjct: 722  YWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAKSKGANMS 781

Query: 994  TAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAE 815
             AA+SWL FMDRLLTL DD   + + LKGK++ LIDIYYDALDAPKSGKKV +P  LKA 
Sbjct: 782  LAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHYLKAN 841

Query: 814  MYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMWKA 635
             +PHYME+    SYHS+SILGQIYD V ++ +E +   E+ KL CF++ IP+  + +W+ 
Sbjct: 842  KFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPCFEVEIPQRCMTLWRG 901

Query: 634  RYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIYH 455
            RYE Y+K+M  A+    E +  + NEVIKKYK L+Y A + E++ + T+ I++EA+AIYH
Sbjct: 902  RYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFEQTVRKTEDIFDEALAIYH 961

Query: 454  VIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            V Y+ A I + +EKC FAW+VAGSALC + A      KEK L ILPSVL++
Sbjct: 962  VTYDNARITYSIEKCGFAWKVAGSALCRIHAMY---RKEKDLPILPSVLQE 1009



 Score =  197 bits (501), Expect(2) = e-153
 Identities = 102/176 (57%), Positives = 134/176 (76%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT LVNRK+    I IRPSM+KVE D  +    TF+SLEIVAIS+RP +   SK 
Sbjct: 481  GCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNKAYLSKN 540

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LI+LL+YGGV +E+F+ LL +AL +T+ VY  +RAAL+VA N+  +D   +  RMIS+G+
Sbjct: 541  LISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTARMISSGI 600

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PLNEP+L   LS L + E+TKL+ GK+PIS+SFYLMGTADPTGVL ++EVC+IL++
Sbjct: 601  PLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDN 656


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  365 bits (937), Expect(2) = e-149
 Identities = 184/356 (51%), Positives = 246/356 (69%), Gaps = 5/356 (1%)
 Frame = -3

Query: 1363 LFWKVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFD 1184
            +F +VLVYRNPG+HFGD+H + AV VK + ++VGNAKYGIFFSTKG RSAA E+A GDFD
Sbjct: 744  IFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEIANGDFD 803

Query: 1183 GDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXRPSF 1004
            GD YW+S+N +LLKYF A+ PW+R++S P +  R P  FS                 P++
Sbjct: 804  GDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEEREHDLFQTFLETRMPNY 863

Query: 1003 DMATAAESWLTFMDRLLTLGDDRATEKNYLKG---KIIQLIDIYYDALDAPKSGKKVKVP 833
             MA A+ +W   MDRLL LG +  TE   +K    K+ +LID+YYDA+DAPKSG KV +P
Sbjct: 864  SMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDAPKSGNKVYIP 923

Query: 832  QELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAY 653
            + LK + +PH++++    SYHS+S+LG+IYDRV   K E     E+ KLS F++ IP+  
Sbjct: 924  KRLKVDKFPHFLQK--KESYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLSAFEVGIPDTC 981

Query: 652  VNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEE 473
            + +W+ RY +YR EMKEAL +  ESKND A++VIKKYKQL+YEAPDMEES ++T  +Y +
Sbjct: 982  LRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEAPDMEESIRSTTDMYND 1041

Query: 472  AVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP-KEKPLTILPSVL 311
            A+AIY V Y+YA   G V KC FAW+VAG+ALC L A   A    +K + + PS+L
Sbjct: 1042 ALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEHNQKVMAMSPSIL 1097



 Score =  193 bits (491), Expect(2) = e-149
 Identities = 102/175 (58%), Positives = 125/175 (71%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGTLLVNRKL   TIQIRPSMIKVE D ++ + + FNSLEI   S +PR    S+ 
Sbjct: 566  GLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKPRNTYLSRT 625

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL YGGVP E+F ++L N L +T+ +YS+   AL+VA NH   D A  A  MI AGV
Sbjct: 626  LIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTATSMIMAGV 685

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            PL EPYL  CLS+L + E+  LK G++PI+++FYLMGTADPT  LN  EVC+ILE
Sbjct: 686  PLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNPHEVCVILE 740


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  349 bits (896), Expect(2) = e-147
 Identities = 183/353 (51%), Positives = 242/353 (68%), Gaps = 4/353 (1%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF  KG RS A EMA  DFDGDM
Sbjct: 593  RVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDM 652

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            YW+SRN +LL+YF+A+EPW R  S      + P +FS D               + S  +
Sbjct: 653  YWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAI 712

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKA 818
              AA++WL FMDRLLTL DD + EK  LK K+++L DIYYDALDAPKSG KV V +ELKA
Sbjct: 713  GMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKA 772

Query: 817  EMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDI-PIPEAYVNMW 641
            E +PH+M R  + SYHS+SILGQIYD V + + E    +E+W+L  F+I  +P+A +  W
Sbjct: 773  EKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSW 830

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K RY+ YR EM  AL+ G E+K++ A EVI KYKQ++Y A + EES +N + I++EA+AI
Sbjct: 831  KDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAI 890

Query: 460  YHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            YHV YE+ +I+G  V  C+F WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 891  YHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 939



 Score =  200 bits (508), Expect(2) = e-147
 Identities = 103/175 (58%), Positives = 133/175 (76%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGTLL+NRKL P TIQIRPSMIKVE D K+   +T NS+EI   SN+PRR+  SKY
Sbjct: 413  GCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKY 472

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP E+F+NLL +AL D  +V S++RAALRV+     +D + V  RMI +G+
Sbjct: 473  LIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RMILSGI 531

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            P++EP+L  CLS +   E+  L+ GK+P+++ FYLMGTADPTG L +DEVCIIL+
Sbjct: 532  PIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILD 586


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  349 bits (896), Expect(2) = e-147
 Identities = 183/353 (51%), Positives = 242/353 (68%), Gaps = 4/353 (1%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF  KG RS A EMA  DFDGDM
Sbjct: 579  RVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDM 638

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            YW+SRN +LL+YF+A+EPW R  S      + P +FS D               + S  +
Sbjct: 639  YWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAI 698

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKA 818
              AA++WL FMDRLLTL DD + EK  LK K+++L DIYYDALDAPKSG KV V +ELKA
Sbjct: 699  GMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKA 758

Query: 817  EMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDI-PIPEAYVNMW 641
            E +PH+M R  + SYHS+SILGQIYD V + + E    +E+W+L  F+I  +P+A +  W
Sbjct: 759  EKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSW 816

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K RY+ YR EM  AL+ G E+K++ A EVI KYKQ++Y A + EES +N + I++EA+AI
Sbjct: 817  KDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAI 876

Query: 460  YHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            YHV YE+ +I+G  V  C+F WRVAG ALC L   ++    EK +  +PSVLR
Sbjct: 877  YHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG---EKSMVCVPSVLR 925



 Score =  200 bits (508), Expect(2) = e-147
 Identities = 103/175 (58%), Positives = 133/175 (76%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGTLL+NRKL P TIQIRPSMIKVE D K+   +T NS+EI   SN+PRR+  SKY
Sbjct: 399  GCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKY 458

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP E+F+NLL +AL D  +V S++RAALRV+     +D + V  RMI +G+
Sbjct: 459  LIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RMILSGI 517

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            P++EP+L  CLS +   E+  L+ GK+P+++ FYLMGTADPTG L +DEVCIIL+
Sbjct: 518  PIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILD 572


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  343 bits (879), Expect(2) = e-143
 Identities = 179/352 (50%), Positives = 238/352 (67%), Gaps = 3/352 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VL+YRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM
Sbjct: 548  EVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDM 607

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXRPSFDM 998
            +++SRN +LL+ FK  EPW    S P+   R P EFSD                +PS  +
Sbjct: 608  FFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTV 667

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELK 821
              AA+SWL  MDRLLTLG+D A E   +K  I  LIDIYYDALDAP K G++++VP+ LK
Sbjct: 668  GVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLK 727

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
            AE++PH+M +    +Y S+SILG+IYD+V A+++  +   +VWKL CFD  + E Y+  W
Sbjct: 728  AELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKW 787

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ +YEA +   S +  + I+EEA+A+
Sbjct: 788  KELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMAL 846

Query: 460  YHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            Y V Y +A   G V  CSFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 847  YQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 896



 Score =  195 bits (496), Expect(2) = e-143
 Identities = 104/175 (59%), Positives = 127/175 (72%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT LVN+KL   T+ IRPSMIKVE D K+    + NSLEIV  S+RP++   SK 
Sbjct: 368  GRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKN 427

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP+EFF+ ++ NAL D   + SN+ AALRVA N+  +D   VA  MI  G+
Sbjct: 428  LIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVA-TMIGCGI 486

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            PL EPYLQ  LS L + EK  LK GKIP+ ES+YLMGTADPTG+L +DEVCIIL+
Sbjct: 487  PLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 541


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  343 bits (879), Expect(2) = e-143
 Identities = 179/352 (50%), Positives = 238/352 (67%), Gaps = 3/352 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VL+YRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM
Sbjct: 526  EVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDM 585

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXRPSFDM 998
            +++SRN +LL+ FK  EPW    S P+   R P EFSD                +PS  +
Sbjct: 586  FFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSSTV 645

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELK 821
              AA+SWL  MDRLLTLG+D A E   +K  I  LIDIYYDALDAP K G++++VP+ LK
Sbjct: 646  GVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDAPKKGGRRIEVPEGLK 705

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
            AE++PH+M +    +Y S+SILG+IYD+V A+++  +   +VWKL CFD  + E Y+  W
Sbjct: 706  AELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDDEVHELYLVKW 765

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  Y  YRKEM+ AL++G+ES ND ANEVI+KYK+ +YEA +   S +  + I+EEA+A+
Sbjct: 766  KELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYEAAEFNLSKRRDEEIFEEAMAL 824

Query: 460  YHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            Y V Y +A   G V  CSFAWRVAG ALC L   +  G  E+P+   PS L+
Sbjct: 825  YQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSALK 874



 Score =  195 bits (496), Expect(2) = e-143
 Identities = 104/175 (59%), Positives = 127/175 (72%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT LVN+KL   T+ IRPSMIKVE D K+    + NSLEIV  S+RP++   SK 
Sbjct: 346  GRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKTFLSKN 405

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP+EFF+ ++ NAL D   + SN+ AALRVA N+  +D   VA  MI  G+
Sbjct: 406  LIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVA-TMIGCGI 464

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            PL EPYLQ  LS L + EK  LK GKIP+ ES+YLMGTADPTG+L +DEVCIIL+
Sbjct: 465  PLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 519


>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
            gi|550336519|gb|ERP59562.1| hypothetical protein
            POPTR_0006s17780g [Populus trichocarpa]
          Length = 866

 Score =  318 bits (816), Expect(2) = e-136
 Identities = 173/352 (49%), Positives = 229/352 (65%), Gaps = 3/352 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYRNPG+HFGD+HI++A YV+E+E+ VGNAKY IFF  KG RS A EM+ GDFDGDM
Sbjct: 526  EVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDM 585

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXXRPSFDM 998
            +++SRN  LL+ FK  EPW    S P+   R P EFSD                +PSF +
Sbjct: 586  FFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRFQPSFTV 645

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELK 821
              AA+SWL  MDRLLTLG+D   E   +K  I  LIDIYYDALDAP K G+K++VP+ LK
Sbjct: 646  GVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALK 705

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
            AE++PH+ME+    +Y S+SILG+IYD+V A+++  +              + E+ +  W
Sbjct: 706  AELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSSN-----------VHESCLVKW 754

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  Y  YR EM+ AL++G E KN+ ANEVIKKYK+++YEA +   S +  + I+EEA A+
Sbjct: 755  KGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARAL 813

Query: 460  YHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            Y V Y +A   G V KC FAWRVAG ALC L  + +   +E+PL   PS L+
Sbjct: 814  YQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVLKNQEERPLICSPSALK 863



 Score =  196 bits (498), Expect(2) = e-136
 Identities = 104/175 (59%), Positives = 128/175 (73%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT LVN+KL   T+ +RPSMIKVE D K+    + NSLEIV  S RP++   SK 
Sbjct: 346  GRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKN 405

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP+EFF+ +L NAL D   + SN++AALRVA N+  +D   VA  MI  G+
Sbjct: 406  LIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVA-TMIGCGI 464

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            PL EPYLQ  LS L++ EK  LK GKIP+ ES+YLMGTADPTG+L +DEVCIIL+
Sbjct: 465  PLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 519


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  331 bits (848), Expect(2) = e-136
 Identities = 174/352 (49%), Positives = 237/352 (67%), Gaps = 2/352 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            KVLVYRNPG+HFGD+H++ A YV+++  VVGNAKY IFFS+KG RS A E+A GDFDGDM
Sbjct: 707  KVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDM 766

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            YW+SRNS+LL+YF+  EPW    S      + P+EFS D               +PS+  
Sbjct: 767  YWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAK 826

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAP-KSGKKVKVPQELK 821
            + AA++WL  MD+ L LG++R  E+N ++ KI+QLI+IYYDALDAP K GKK++VP+ LK
Sbjct: 827  SVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLK 886

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
            A   PH+MER  + SY S+SILGQI+D    ++ E V   EV KL CF+  +PE     W
Sbjct: 887  AGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEE-VPNIEVQKLPCFEEELPEYIFMKW 944

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  YE YRK+M +A++   ++KN AA   IKKYK+++Y A ++E S ++ + +Y+EA+AI
Sbjct: 945  KFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAI 1004

Query: 460  YHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            Y V Y++AM   V  C FAW+VAGSAL  L A +     E+    LPSV+R+
Sbjct: 1005 YQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK---HSERSFHCLPSVMRE 1053



 Score =  183 bits (465), Expect(2) = e-136
 Identities = 97/174 (55%), Positives = 127/174 (72%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT L+N++L P TIQIR SMIKVE D  +   ET NSLE+V  SN P+R   S+ 
Sbjct: 527  GLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPKRTFLSRN 586

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALLNYGGVP+E+F+N+L++AL D + V+S++RAALRV+ N+  +D  F+  RMI AG+
Sbjct: 587  LIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEMD-DFLVARMILAGI 645

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIIL 1356
            PL+E YLQ  LS L + EK  LK G++ + E +YLMGT DPT  L + EVC+IL
Sbjct: 646  PLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLESGEVCVIL 699


>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843309|ref|XP_006475556.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
            sinensis] gi|557554497|gb|ESR64511.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1015

 Score =  306 bits (783), Expect(2) = e-136
 Identities = 167/353 (47%), Positives = 227/353 (64%), Gaps = 3/353 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            KVLVYRNPG+HFGD+H+++A YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDM
Sbjct: 664  KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 723

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            Y++SRN ELLK+FK +E W        + KR P +FS +                PS   
Sbjct: 724  YFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAK 782

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELK 821
            + AA+ W   MDR LTLGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK
Sbjct: 783  SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 842

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
             E +P YM R   +S+ S+S+LG IY+ V +++       E+WKL CFD  +PEA +  W
Sbjct: 843  VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW 902

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  Y+ YR EMKEA++     + +AA  VI+KYKQ++Y A + E+S++  + IY EA+AI
Sbjct: 903  KGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAI 962

Query: 460  YHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            Y++ Y+ A     V  CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 963  YNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1012



 Score =  207 bits (528), Expect(2) = e-136
 Identities = 103/175 (58%), Positives = 137/175 (78%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGTLL+N+KL P TIQIRPSMIKV+ D  +   +TFNSLE+V  SN+PR+   S+ 
Sbjct: 482  GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 541

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP+ FFL++L NAL D R V+SN+R AL+V+ N+ G+D+ F + RMI +G+
Sbjct: 542  LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI 601

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
             L+EPYLQ  LS L + EK  L+ GK+P++ES+YLMGT DPTG+L ++EVCIIL+
Sbjct: 602  SLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK 656


>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
            gi|568843311|ref|XP_006475557.1| PREDICTED: probable
            RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
            sinensis] gi|557554498|gb|ESR64512.1| hypothetical
            protein CICLE_v10007331mg [Citrus clementina]
          Length = 1013

 Score =  306 bits (783), Expect(2) = e-136
 Identities = 167/353 (47%), Positives = 227/353 (64%), Gaps = 3/353 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            KVLVYRNPG+HFGD+H+++A YVKE+E+ VG +KY IFF   G RS A E+A GDFDGDM
Sbjct: 662  KVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRSLADEIAGGDFDGDM 721

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            Y++SRN ELLK+FK +E W        + KR P +FS +                PS   
Sbjct: 722  YFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELFKLFLNTRFCPSNAK 780

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPK-SGKKVKVPQELK 821
            + AA+ W   MDR LTLGD+ A EK  +K  +++LI+IYYDALDAPK SG KV+VP++LK
Sbjct: 781  SLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDAPKKSGIKVEVPEDLK 840

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
             E +P YM R   +S+ S+S+LG IY+ V +++       E+WKL CFD  +PEA +  W
Sbjct: 841  VEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLPCFDDGVPEACMTKW 900

Query: 640  KARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAI 461
            K  Y+ YR EMKEA++     + +AA  VI+KYKQ++Y A + E+S++  + IY EA+AI
Sbjct: 901  KGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYGAAEFEQSTRTLEEIYNEALAI 960

Query: 460  YHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            Y++ Y+ A     V  CSFAWRVAGSAL    A R     ++ +    SVLR+
Sbjct: 961  YNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---QGDRSMLCSASVLRE 1010



 Score =  207 bits (528), Expect(2) = e-136
 Identities = 103/175 (58%), Positives = 137/175 (78%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGTLL+N+KL P TIQIRPSMIKV+ D  +   +TFNSLE+V  SN+PR+   S+ 
Sbjct: 480  GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKTSNQPRKTYLSRN 539

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL+YGGVP+ FFL++L NAL D R V+SN+R AL+V+ N+ G+D+ F + RMI +G+
Sbjct: 540  LIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDYDFTSARMILSGI 599

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
             L+EPYLQ  LS L + EK  L+ GK+P++ES+YLMGT DPTG+L ++EVCIIL+
Sbjct: 600  SLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSNEVCIILK 654


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  322 bits (824), Expect(2) = e-134
 Identities = 167/331 (50%), Positives = 226/331 (68%), Gaps = 5/331 (1%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYR+PG+HFGD+H+++A YVKE+E VVGNAKY IFFS KG RS A EM  GDFDGD+
Sbjct: 447  QVLVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGGDFDGDL 506

Query: 1174 YWISRNSELLKYFKANEPW-NRVYSIPDSKKRNPQE-FSDVXXXXXXXXXXXXXXRPSFD 1001
            YW+SRN +LL+ FK +EPW     S P      P E   +                PSF 
Sbjct: 507  YWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALIKLFLKTRFEPSFA 566

Query: 1000 MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELK 821
            M+ A++SWL  MDRLL LGD   +EK ++K  +++L+D+YY+ALDAPK G KV VP ELK
Sbjct: 567  MSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDAPKKGGKVVVPGELK 626

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMW 641
            + ++PHYMER    SY S+SILG IYD V A++ E    +EV KL  FD+ +PE  +  W
Sbjct: 627  SNLFPHYMERVN--SYKSTSILGLIYDTVNAYQAEDASIKEVKKLPMFDVEVPEECLKKW 684

Query: 640  KARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLIY-EAPDMEESSKNTQVIYEEAV 467
            +  Y+ YR EM  A++  D +SKN+AA++V++KYK+++Y  A D+E S++    I++EA+
Sbjct: 685  REHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYGGAEDLENSTRPLHEIFDEAL 744

Query: 466  AIYHVIYEYAMIHG-VEKCSFAWRVAGSALC 377
            AIY V Y++A+  G V KC FAW+VAGSALC
Sbjct: 745  AIYRVTYDHAISQGAVGKCCFAWKVAGSALC 775



 Score =  187 bits (476), Expect(2) = e-134
 Identities = 97/176 (55%), Positives = 126/176 (71%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT L+N+ L P TIQIRPSM+KVE D  +  ++T NSLEIV +S   R   FS++
Sbjct: 266  GRAVKGTFLINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNTFFSRH 325

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL +GGVP+E+F  LLM  L DTR V+ +RRAA +VA NH  +D  + + +MI +G+
Sbjct: 326  LIALLCHGGVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKMILSGI 385

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL E YLQ  LS L++ E   L++GKI   +S+ LMGTADPTG+L  DEVCIIL+S
Sbjct: 386  PLEESYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILDS 441


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  309 bits (791), Expect(2) = e-133
 Identities = 166/356 (46%), Positives = 232/356 (65%), Gaps = 6/356 (1%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYRNPG+HFGD+HI++A YVK +EE VGN+KY +FF  KG RS   E+A GDFDGDM
Sbjct: 632  EVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDM 691

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXRPSFD-- 1001
            Y+ISRN ELL++FK +EPW  V   P SK  + +  S +              +  F   
Sbjct: 692  YFISRNPELLEHFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAGFHAS 749

Query: 1000 --MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQE 827
              +  AA+SWLT MDRLL LGD+RA EK  +K K+++LIDIYYDALDAPK G KV +P E
Sbjct: 750  NVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNE 809

Query: 826  LKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAH-KNEAVLQREVWKLSCF-DIPIPEAY 653
            L+ +++PHYMER  +  + S+SILG IYD V +    E     E+ KL CF D P+ E +
Sbjct: 810  LRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSEFH 867

Query: 652  VNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEE 473
            +   +  Y++YR EM +A+++    K+++ANEVI++YKQ  Y A   E+S K+ + +Y +
Sbjct: 868  MEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQ 924

Query: 472  AVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            A+ +Y ++Y+YA+  GV KC F W+VAG  LC    + +   +EK L   PSVL++
Sbjct: 925  ALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRF--YLMKKMQEKSLVCAPSVLKE 978



 Score =  194 bits (493), Expect(2) = e-133
 Identities = 96/176 (54%), Positives = 131/176 (74%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            GYAVKGT L+N+KL P T+Q+RPSMIKV +D  +    TFN+LE+V  SN PRR   SK 
Sbjct: 452  GYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKN 511

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            L+ALL+YGG+P EFFL++L+N L ++++++ N+ AAL VA N+  +D    A+ MI  G+
Sbjct: 512  LVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQ-MILVGI 570

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EP+L+  LS L + EK  LK G++P++ES+YLMGT DPTG L  DEVC+ILES
Sbjct: 571  PLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILES 626


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  304 bits (779), Expect(2) = e-132
 Identities = 166/356 (46%), Positives = 229/356 (64%), Gaps = 6/356 (1%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYRNPG+HFGD+HI++A YVK +EE VGN+K+ +FF  KG RS   E+A GDFDGDM
Sbjct: 628  EVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDM 687

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXRPSFD-- 1001
            Y+ISRN ELL+ FK +EPW  V   P SK  + +  S +                 F   
Sbjct: 688  YFISRNPELLENFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHAS 745

Query: 1000 --MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQE 827
              +  AA+SWLT MDR L LGDDRA EK  +K K+++LIDIYYDALDAPK G KV +P +
Sbjct: 746  NVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNK 805

Query: 826  LKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVL-QREVWKLSCF-DIPIPEAY 653
            LK +++PHYMER  D  + S+SILG I+D V +   E      E+ KL CF D P+ E +
Sbjct: 806  LKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFH 863

Query: 652  VNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEE 473
            +   +  Y++YR EM +A+++    K+++ANEVI++YKQ  Y A   E+S K+ + +Y +
Sbjct: 864  MQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFYGAAGFEDSKKSLEELYPQ 920

Query: 472  AVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            A+A+Y ++Y+YA+  GV KC F W+VAG  LC    +     +EK L   PSVL++
Sbjct: 921  ALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRF--YLNKKMQEKCLVCAPSVLKE 974



 Score =  196 bits (497), Expect(2) = e-132
 Identities = 96/176 (54%), Positives = 131/176 (74%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            GYAVKGT L+N+KL P T+Q+RPSMIKV +D  +    TFN+LE+V  SN P+R   SK 
Sbjct: 448  GYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKN 507

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            L+ALL+YGG+P EFFL++L+N L ++++++ N+RAAL  A N+  +D    A+ MI  G+
Sbjct: 508  LVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQ-MILVGI 566

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EP+L+  LS L + EK  LK GK+P++ES+YLMGT DPTG L  DEVC+ILES
Sbjct: 567  PLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILES 622


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  326 bits (835), Expect(2) = e-131
 Identities = 180/360 (50%), Positives = 235/360 (65%), Gaps = 10/360 (2%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            KVLVYR PG+H GD+H+++A YVKEIE +VGNAKYGIFFS KG RS A EM  GDFDGD+
Sbjct: 1054 KVLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMGGGDFDGDL 1113

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKK-------RNPQEFSDVXXXXXXXXXXXXXX 1016
            YW+SRN +LL+++K +EPW    SI   K         +P++  DV              
Sbjct: 1114 YWVSRNPQLLEWYKPSEPWIEA-SISTKKNPSRCPSDHSPEDLEDV----LFRSFLTTRF 1168

Query: 1015 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKV 836
             PSF M+ AA++WL +MD  LTLGD    EKN +K KI+QL+D+YY ALDA K G KV V
Sbjct: 1169 EPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDAAKKGVKVDV 1228

Query: 835  PQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFD-IPIPE 659
            P+ELK   +PHYM +  + SY S+SILG IY+RV  H+ E    +EV KL  FD   +P+
Sbjct: 1229 PKELKVSCFPHYMGK--NRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPAFDENEVPD 1286

Query: 658  AYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVI 482
            A ++ W   +  YRKEM  AL+  D +SKN +A+ VI+KY++++YEA D EES +  + I
Sbjct: 1287 ACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILYEANDFEESRRPIEEI 1346

Query: 481  YEEAVAIYHVIYEYA-MIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            Y EA AIYHV Y++A  +  V+ CSFAWRVAG ALC L A       E+  TI+ SVL +
Sbjct: 1347 YNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA---RNNNERFCTIVSSVLME 1403



 Score =  172 bits (435), Expect(2) = e-131
 Identities = 89/171 (52%), Positives = 116/171 (67%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G A KGTLLVN+KL+P  IQIRPSM+KV+ D  +   +T NSLEIV  S  PR    S+ 
Sbjct: 877  GSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPRNTHLSRI 936

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL +GGVP+EFF+ +L  AL D+  V+  +RAAL+VA  +  +D  F+   MIS G+
Sbjct: 937  LIALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYGEMDDNFLGRLMISFGI 996

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVC 1365
            PL E YL+  LS L + E   L++G++ I +S+ LMGTADPTG L  DEVC
Sbjct: 997  PLEESYLRYRLSVLMKEENNSLRKGRLYIPDSYNLMGTADPTGTLKEDEVC 1047


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  309 bits (792), Expect(2) = e-129
 Identities = 173/356 (48%), Positives = 235/356 (66%), Gaps = 7/356 (1%)
 Frame = -3

Query: 1351 VLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMY 1172
            VLVYRNPG+HFGD+H M+A YVKE+E  VG++KYGIFF   G RS A E+A GDFDGD Y
Sbjct: 637  VLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTY 696

Query: 1171 WISRNSELLKYFKANEPWNRVYSIP-DSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            W+S + +LL+YF+  +PW    S+P DS  + P EFS +               +PS+ M
Sbjct: 697  WVSNHPQLLQYFRKGDPWIE-NSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAM 755

Query: 997  ATAAESWLTFMDRLLTLGD-DRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELK 821
              +  SW+  MDRLLTL +     EK  +K  +++LIDIYY+ALDAPKSG+KV+VP +L 
Sbjct: 756  GMSENSWMALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLI 815

Query: 820  AEMYPHYMERWPDLSYHSSSILGQIYDRV-IAHKNEAVLQREVWKLSCFDIPIPEAYVNM 644
            AE++PHYME+  D S+ S+SILG IYD V I  +N+ V   E+WKL CFD+ +P + +  
Sbjct: 816  AELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDMV--GEIWKLPCFDVEVPPSCLEK 871

Query: 643  WKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLIY-EAPDMEESSKNTQVIYEEA 470
            WK +YE YRK+M +AL   D+SK ++ A EV +KYK+  Y    +ME   K+   I+ EA
Sbjct: 872  WKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEA 931

Query: 469  VAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
            +A+Y+V YEYAM+   V++C FAW++AGSAL  L    I    EK L   PSV+R+
Sbjct: 932  LAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRL---YIIKQNEKALNCDPSVVRE 984



 Score =  182 bits (463), Expect(2) = e-129
 Identities = 96/176 (54%), Positives = 128/176 (72%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G+A+KGTLLVNRKL P TIQ+RPSMIKVE+D  V  + + NSLE+V  SN+P+R   SK+
Sbjct: 457  GHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHMQ-SINSLEVVTTSNKPKRGYLSKH 515

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LIALL++GGVP EFF++LL + + D  +VYSN+R+ALR + N    D  + A  MI  G+
Sbjct: 516  LIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKD-EYNAAEMILCGI 574

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EP+L+  LS   R EK KL+ GK+ + + FYLMGT DPTG L  ++VCII E+
Sbjct: 575  PLDEPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHEN 630


>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
            gi|548857326|gb|ERN15132.1| hypothetical protein
            AMTR_s00056p00110240 [Amborella trichopoda]
          Length = 988

 Score =  316 bits (809), Expect(2) = e-128
 Identities = 171/352 (48%), Positives = 228/352 (64%), Gaps = 2/352 (0%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            KVLVYR+PG+HFGD+H+  A Y++++ E+VGNAK+ IFFST+G RSAA E+A GDFDGDM
Sbjct: 641  KVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEIANGDFDGDM 700

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXXRPSFDM 998
            YWIS N ELL YFKA  PW R  S     +R P E+S D                PS   
Sbjct: 701  YWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLESRFHPSIAK 760

Query: 997  ATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKA 818
              AA+SWL +MDRLLTLGD+ A EK  L  K+++L D+YY+A+DAPKSGKKV+VP++LK 
Sbjct: 761  CAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDAPKSGKKVEVPKDLKP 820

Query: 817  EMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMWK 638
            E YPH+MER     Y S+SILGQIYD ++A     V   ++  L CF   +  + +  WK
Sbjct: 821  ERYPHFMER--TYQYTSTSILGQIYD-LVASAQMDVPCEDIELLPCFLEEVEPSGMEKWK 877

Query: 637  ARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEAVAIY 458
              Y  YR EM +AL S D+ K++ A+EVI+ YK+++Y A + EE ++  + I+ EA  IY
Sbjct: 878  GLYAQYRDEMNKALSSTDQKKSN-ADEVIQNYKKILYGAQEYEERTRPREEIFREACEIY 936

Query: 457  HVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 305
             + Y YA     + KC FAW+VAG ALC L A +    K+  +T L SVL++
Sbjct: 937  AISYFYAKEKSDIAKCGFAWKVAGCALCELHALK---QKKNSITCLSSVLQE 985



 Score =  173 bits (439), Expect(2) = e-128
 Identities = 91/175 (52%), Positives = 119/175 (68%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT+LVN+ L P TIQ+RPSM+KVERD    +  +FNS E+V  SNRPR    S+Y
Sbjct: 460  GCAVKGTVLVNKLLPPNTIQVRPSMVKVERDTDFSRLPSFNSFEMVGTSNRPRGAALSRY 519

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LI LL++GGVP+  F+ L+  AL D +NV  +++ AL  A  +  +    +  RMI  G+
Sbjct: 520  LITLLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLVARMIFCGL 579

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILE 1353
            PL EPYLQ  LS L + E+  LKEGK+ +  S+YLMGTADPTG L  +EVCIIL+
Sbjct: 580  PLEEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCIILD 634


>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
            gi|557110064|gb|ESQ50361.1| hypothetical protein
            EUTSA_v10001897mg [Eutrema salsugineum]
          Length = 988

 Score =  296 bits (757), Expect(2) = e-128
 Identities = 165/341 (48%), Positives = 218/341 (63%), Gaps = 7/341 (2%)
 Frame = -3

Query: 1351 VLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMY 1172
            VLVYRNPG+HFGD+H+++A YVK +EE VGN+KY +FF  KG RS   E+A GDFDGDMY
Sbjct: 641  VLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMY 700

Query: 1171 WISRNSELLKYFKANEPWNRVYSIPDSKK---RNPQEFSDVXXXXXXXXXXXXXXRPSFD 1001
            +ISRN ELL+ FK +EPW  V   P SK    R P +FS                  S +
Sbjct: 701  FISRNPELLEQFKPSEPW--VSLSPPSKSNSTRKPIDFSPEELEEELFDMFLKARFHSSN 758

Query: 1000 -MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQEL 824
             +  AA+SWLT MDR LTLGD+RA EK  +K K++ LIDIYYDALDA K G KV +P  L
Sbjct: 759  VIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDAAKKGVKVSLPDAL 818

Query: 823  KAEMYPHYMERWPDLSYHSSSILGQIYDRVIAH-KNEAVLQREVWKLSCF-DIPIPEAYV 650
            K +++PHYMER  D  + S+SILG IYD V +    E     E+ KL CF D P+ E + 
Sbjct: 819  KPDIFPHYMER--DKKFKSTSILGIIYDFVQSQTAEEHTPSSEISKLQCFEDEPVSEFHK 876

Query: 649  NMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEA 470
               +  Y++YR EM +AL     +K+D A+EVI+KYKQ  Y A   E+S K+ + +Y +A
Sbjct: 877  EKCRPWYDNYRAEMIQAL----SNKDDTASEVIEKYKQEFYGAAGFEDSKKSLEELYPQA 932

Query: 469  VAIYHVIYEYAM-IHGVEKCSFAWRVAGSALCNLCAWRIAG 350
            +A+Y+++Y+YA+ +  V KC FAW+VAG  LC     +  G
Sbjct: 933  LALYNIVYDYAIEMKSVRKCGFAWKVAGPVLCRFYLKKTGG 973



 Score =  193 bits (491), Expect(2) = e-128
 Identities = 96/176 (54%), Positives = 129/176 (73%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT L+N+KL   T+Q+RPSMIKV +D  +    TFNSLE+V  SN P+R   S+ 
Sbjct: 460  GNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRTKLSRN 519

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            L+ALL+YGGVP EFFL+LL+N + +T+ +++N+RAAL+ A NH  +D    A+ MI  G+
Sbjct: 520  LVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQ-MILVGI 578

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EP+L+  LS L   EK  LK G++P++ES+YLMGT DPTG L  DEVC+ILES
Sbjct: 579  PLDEPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILES 634


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  301 bits (770), Expect(2) = e-126
 Identities = 164/354 (46%), Positives = 227/354 (64%), Gaps = 6/354 (1%)
 Frame = -3

Query: 1351 VLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMY 1172
            VLVYRNPG+HFGD+H+++A YVK +E+ VGNAK+ +FF  KG RS   E+A GDFDGDMY
Sbjct: 640  VLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMY 699

Query: 1171 WISRNSELLKYFKANEPWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXXXRPSFD 1001
            +ISRN +LL++FK +EPW  V S   SK    R P E S+                   D
Sbjct: 700  FISRNPKLLEHFKPSEPW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRD 757

Query: 1000 -MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQEL 824
             +  AA+ WL  MD  LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV +P +L
Sbjct: 758  VIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDL 817

Query: 823  KAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCF-DIPIPEAYVN 647
            + + +PHYMER P   + S+SILG I+D V +H  E     E+ KL  F D P+P+++++
Sbjct: 818  EIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMD 877

Query: 646  MWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEA 470
             + + YE+YR EM +A+   D+ K N   NEVI++YKQ  Y A   E+S+K+ + +Y +A
Sbjct: 878  KFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQA 937

Query: 469  VAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            +A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 938  LALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 988



 Score =  180 bits (457), Expect(2) = e-126
 Identities = 91/176 (51%), Positives = 123/176 (69%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            GYAVKGT L N+KL P T+Q+RPSMIKV  D  +    TFNSLE+V  SN PR+   S+ 
Sbjct: 461  GYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRN 520

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            L+ALL+YGGVP +FFLN+L N L +++ ++ + RAA + A N+   D  + A+ MI  G+
Sbjct: 521  LVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTAD-MILVGI 577

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EPYL+  LS L + E+  LK G+ PI ES+Y+MGT DPTG L  +E+C+IL S
Sbjct: 578  PLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHS 633


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  301 bits (770), Expect(2) = e-126
 Identities = 164/354 (46%), Positives = 227/354 (64%), Gaps = 6/354 (1%)
 Frame = -3

Query: 1351 VLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDMY 1172
            VLVYRNPG+HFGD+H+++A YVK +E+ VGNAK+ +FF  KG RS   E+A GDFDGDMY
Sbjct: 614  VLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMY 673

Query: 1171 WISRNSELLKYFKANEPWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXXXXXXXRPSFD 1001
            +ISRN +LL++FK +EPW  V S   SK    R P E S+                   D
Sbjct: 674  FISRNPKLLEHFKPSEPW--VSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRD 731

Query: 1000 -MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQEL 824
             +  AA+ WL  MD  LTLGD+ A EK   K  I++LIDIYYDALDAPK G KV +P +L
Sbjct: 732  VIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDL 791

Query: 823  KAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCF-DIPIPEAYVN 647
            + + +PHYMER P   + S+SILG I+D V +H  E     E+ KL  F D P+P+++++
Sbjct: 792  EIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVPKSHMD 851

Query: 646  MWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLIYEAPDMEESSKNTQVIYEEA 470
             + + YE+YR EM +A+   D+ K N   NEVI++YKQ  Y A   E+S+K+ + +Y +A
Sbjct: 852  KFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEELYPQA 911

Query: 469  VAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSVLR 308
            +A+Y+V+Y+YA+  GV KC+FAW VAG  LC    + +   K+K +    SVL+
Sbjct: 912  LALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKTKDKSVVASTSVLK 962



 Score =  180 bits (457), Expect(2) = e-126
 Identities = 91/176 (51%), Positives = 123/176 (69%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            GYAVKGT L N+KL P T+Q+RPSMIKV  D  +    TFNSLE+V  SN PR+   S+ 
Sbjct: 435  GYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRN 494

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            L+ALL+YGGVP +FFLN+L N L +++ ++ + RAA + A N+   D  + A+ MI  G+
Sbjct: 495  LVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTAD-MILVGI 551

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PL+EPYL+  LS L + E+  LK G+ PI ES+Y+MGT DPTG L  +E+C+IL S
Sbjct: 552  PLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHS 607


>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 911

 Score =  281 bits (718), Expect(2) = e-125
 Identities = 132/247 (53%), Positives = 175/247 (70%)
 Frame = -3

Query: 1354 KVLVYRNPGMHFGDVHIMEAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATGDFDGDM 1175
            +VLVYRNPG+HFGDVH+M+A YV+E+ +VVG+AKYGIFFSTKG RSAA E+A GDFDGDM
Sbjct: 664  RVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIANGDFDGDM 723

Query: 1174 YWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXRPSFDMA 995
            YW+S N +++  +  + PW+R++S P +  + P EFS                    +M+
Sbjct: 724  YWVSINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFSADKLEYELFRQFLEAKSKGANMS 783

Query: 994  TAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDAPKSGKKVKVPQELKAE 815
             AA+SWL FMDRLL L DD   E + LKGK++ LIDIYYDALDAPKSGKKV +P +LKA 
Sbjct: 784  VAADSWLAFMDRLLMLRDDNVDEMHSLKGKMLHLIDIYYDALDAPKSGKKVSIPHDLKAN 843

Query: 814  MYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMWKA 635
             +PHYM +   LSYHS+SILGQIYD V  + +E +   E+ KL CF++ IP+  + +W+ 
Sbjct: 844  KFPHYMAKGNSLSYHSTSILGQIYDYVDTYPDEDLCITEISKLPCFEVEIPQTCMELWRG 903

Query: 634  RYESYRK 614
            RYE Y++
Sbjct: 904  RYEEYKR 910



 Score =  196 bits (498), Expect(2) = e-125
 Identities = 101/176 (57%), Positives = 134/176 (76%)
 Frame = -2

Query: 1877 GYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRNCFSKY 1698
            G AVKGT LVNRK+    I IRPSM+KVE D  +    TF+SLEIVAIS+RP +   SK 
Sbjct: 483  GCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNKAYLSKN 542

Query: 1697 LIALLNYGGVPQEFFLNLLMNALVDTRNVYSNRRAALRVASNHDGLDFAFVAERMISAGV 1518
            LI+LL+YGGV +E+F+ LL +AL +T+ VY  +RAAL+V  N+  +D   +  RMIS+G+
Sbjct: 543  LISLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTARMISSGI 602

Query: 1517 PLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILES 1350
            PLNEP+L+  LS L + E+TKL+ GK+PIS+SFYLMGTADPTGVL ++EVC+IL++
Sbjct: 603  PLNEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVILDN 658