BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00020532
         (723 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006449088.1| hypothetical protein CICLE_v10018367mg [Citr...   201   2e-49
ref|XP_006467990.1| PREDICTED: pentatricopeptide repeat-containi...   197   2e-48
ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   195   1e-47
ref|XP_006348079.1| PREDICTED: pentatricopeptide repeat-containi...   193   4e-47
gb|EOY28616.1| Tetratricopeptide repeat-like superfamily protein...   191   3e-46
gb|EMJ13917.1| hypothetical protein PRUPE_ppa018797mg [Prunus pe...   186   9e-45
ref|XP_004233795.1| PREDICTED: pentatricopeptide repeat-containi...   184   2e-44
ref|XP_002305605.1| pentatricopeptide repeat-containing family p...   184   2e-44
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   177   4e-42
ref|XP_006285106.1| hypothetical protein CARUB_v10006439mg [Caps...   172   8e-41
ref|XP_006413812.1| hypothetical protein EUTSA_v10024760mg [Eutr...   171   3e-40
sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-c...   169   8e-40
ref|XP_006857674.1| hypothetical protein AMTR_s00061p00160470 [A...   141   2e-31
ref|XP_006826483.1| hypothetical protein AMTR_s00004p00243870 [A...   141   2e-31
ref|NP_193849.2| pentatricopeptide repeat-containing protein [Ar...   112   2e-22
emb|CAA17536.1| putative protein [Arabidopsis thaliana] gi|72689...   112   2e-22
ref|XP_002867861.1| predicted protein [Arabidopsis lyrata subsp....   111   2e-22
ref|XP_004305215.1| PREDICTED: pentatricopeptide repeat-containi...    99   2e-18
ref|XP_006341056.1| PREDICTED: pentatricopeptide repeat-containi...    97   4e-18
ref|XP_004296042.1| PREDICTED: putative pentatricopeptide repeat...    96   9e-18

>ref|XP_006449088.1| hypothetical protein CICLE_v10018367mg [Citrus clementina]
           gi|557551699|gb|ESR62328.1| hypothetical protein
           CICLE_v10018367mg [Citrus clementina]
          Length = 578

 Score =  201 bits (511), Expect = 2e-49
 Identities = 96/183 (52%), Positives = 130/183 (71%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V D+ Y   V VLCKE+  ++V  LL D + RG+I  A ELS +V  QC +G+W+E EEL
Sbjct: 391 VKDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 450

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
              ++DQG LLDS  C   ++ YCS R+I KAI LH K+E LKG+LD A Y + L  LFK
Sbjct: 451 LSAVLDQGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 510

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
           + R+EEA+++FDYMK  K ++S SF +++  LCH KELRKAMK+HDEML++G KPD+ TY
Sbjct: 511 DGRMEEAVQIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKIHDEMLKMGHKPDEATY 570

Query: 181 KRL 173
           K++
Sbjct: 571 KQV 573


>ref|XP_006467990.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Citrus sinensis]
          Length = 538

 Score =  197 bits (502), Expect = 2e-48
 Identities = 95/183 (51%), Positives = 129/183 (70%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V D+ Y   V VLCKE+  ++V  LL D + RG+I  A ELS +V  QC +G+W+E EEL
Sbjct: 351 VRDSDYYAFVNVLCKEHQPEEVCGLLRDVVERGYIPCAMELSRFVASQCGKGKWKEVEEL 410

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
              ++D+G LLDS  C   ++ YCS R+I KAI LH K+E LKG+LD A Y + L  LFK
Sbjct: 411 LSAVLDKGLLLDSFCCSSLMEYYCSNRQIDKAIALHIKIEKLKGSLDVATYDVLLDGLFK 470

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
           + R+EEA+++FDYMK  K ++S SF +++  LCH KELRKAMK HDEML++G KPD+ TY
Sbjct: 471 DGRMEEAVRIFDYMKELKVVSSSSFVIVVSRLCHLKELRKAMKNHDEMLKMGHKPDEATY 530

Query: 181 KRL 173
           K++
Sbjct: 531 KQV 533


>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  195 bits (496), Expect = 1e-47
 Identities = 91/183 (49%), Positives = 130/183 (71%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V D CY+  V VLC+E+PSQ+VS L+ + I +GF     +LS ++   C  GRW EA++L
Sbjct: 382 VKDGCYHAFVNVLCEEDPSQEVSKLMGEIIGKGFSPCGSKLSKFITSLCKNGRWTEADDL 441

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            ++ +++G L DS  C   V+ YC  R+I  +I LH+K++ +KG+LD A Y++ L  LF 
Sbjct: 442 LNVTIEKGLLPDSFCCSALVEHYCRSRQIDSSIALHEKIKKVKGSLDVATYNVLLNGLFM 501

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
           EKRIE+A+ VFD M++   L+S SF++M+ GLC E+ELRKAMK HDEML++GLKPD+ TY
Sbjct: 502 EKRIEDAVSVFDCMRSQNLLSSTSFTIMVSGLCRERELRKAMKFHDEMLKMGLKPDRATY 561

Query: 181 KRL 173
           KRL
Sbjct: 562 KRL 564


>ref|XP_006348079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like isoform X1 [Solanum tuberosum]
           gi|565362693|ref|XP_006348080.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21170-like isoform X2 [Solanum tuberosum]
           gi|565362695|ref|XP_006348081.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21170-like isoform X3 [Solanum tuberosum]
          Length = 584

 Score =  193 bits (491), Expect = 4e-47
 Identities = 93/183 (50%), Positives = 126/183 (68%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           +SD CY+  + VLC ENPS +VS+LL D I RGF+    ++S ++  QC + +W+EAEEL
Sbjct: 397 ISDKCYSAFMSVLCNENPSLEVSSLLKDLIGRGFVPPVSQVSKFIVSQCEKRQWKEAEEL 456

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            ++I  +    +S  C   V+ YC  R I  AI+LH +LE L   LD   Y + L SLFK
Sbjct: 457 LNVIFQRRLQFESFCCCSLVRHYCFSRRIDSAISLHTELERLGVALDVETYGLLLDSLFK 516

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
            +R EEA+K+FDYM+    L+SESFS+MIRGLC E+E RKAM+LHD+ML+LG KPD++ Y
Sbjct: 517 SRRREEALKIFDYMRTHDMLSSESFSIMIRGLCQEQEFRKAMRLHDDMLKLGFKPDKKAY 576

Query: 181 KRL 173
           KRL
Sbjct: 577 KRL 579


>gb|EOY28616.1| Tetratricopeptide repeat-like superfamily protein, putative
           [Theobroma cacao]
          Length = 578

 Score =  191 bits (484), Expect = 3e-46
 Identities = 88/183 (48%), Positives = 129/183 (70%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V+++CY+  +  LCKE+ S     LLVD I+RG    A +LS Y++ QC++  WR+AEEL
Sbjct: 391 VNESCYSAFINALCKEDQSDDGYELLVDIIKRGHNPCASKLSKYISSQCSQMNWRKAEEL 450

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            DL++++G L DS  C   ++ YC  R++ K + LHDK+E +KG LD   Y++ L  L+ 
Sbjct: 451 LDLMLEKGLLPDSFGCCLLIQYYCFNRQVDKIVALHDKMEKVKGCLDVTTYNMILDVLWG 510

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
           E++ EEA++V+DYM     ++S SF++MIR LCH KE++KAMK+HDEML +GLKPD+ TY
Sbjct: 511 ERKAEEAVRVYDYMTGLNLVDSASFTIMIRELCHMKEMKKAMKIHDEMLNMGLKPDKGTY 570

Query: 181 KRL 173
           KRL
Sbjct: 571 KRL 573


>gb|EMJ13917.1| hypothetical protein PRUPE_ppa018797mg [Prunus persica]
          Length = 584

 Score =  186 bits (471), Expect = 9e-45
 Identities = 93/183 (50%), Positives = 124/183 (67%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V  + Y+    VLCKE   ++   LL+D I RG    A ELS +++  C  GRWREAE L
Sbjct: 381 VDGSSYHAFADVLCKEERYEEGFELLMDVISRGCSPSASELSCFISFLCRRGRWREAEYL 440

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            ++++D+G L D   C   V RYCS R+I  AI LH+K+E L G+LD   Y++ L+ LF 
Sbjct: 441 LNVVLDKGLLPDLICCSPLVGRYCSGRQIDSAIALHNKMEKLNGSLDVTTYNVLLSGLFA 500

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
            +RIEEA++VFDYM+    ++S SF++MIRGLC  KELRKAMK+HDEML++ LKPD  TY
Sbjct: 501 ARRIEEAMRVFDYMRRHNLMSSASFTIMIRGLCGVKELRKAMKIHDEMLKMRLKPDAATY 560

Query: 181 KRL 173
           KRL
Sbjct: 561 KRL 563


>ref|XP_004233795.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Solanum lycopersicum]
          Length = 584

 Score =  184 bits (468), Expect = 2e-44
 Identities = 89/183 (48%), Positives = 123/183 (67%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           ++  CY+  + VLC E PS +VS+LL D I RGF+    ++S ++  QC + +W+EAEEL
Sbjct: 397 INGKCYSAFMSVLCNEIPSVEVSSLLKDLIGRGFVPPVSQVSKFIVSQCEKHQWKEAEEL 456

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            ++I  +G   +S  C   V+ YC  R I  AI+LH +LE L   LD   Y + L  LFK
Sbjct: 457 LNVIFQKGLQFESFCCCSLVRHYCFSRRIDSAISLHTELERLGVALDVETYGLLLDRLFK 516

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
            +R EEA+K+FDYM+    L+S SFS+MIRGLC E+E RKAM+LHD+ML+LG KPD++ Y
Sbjct: 517 SRRHEEALKIFDYMRTHDMLSSGSFSIMIRGLCQEEEFRKAMRLHDDMLKLGFKPDKKAY 576

Query: 181 KRL 173
           KRL
Sbjct: 577 KRL 579


>ref|XP_002305605.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222848569|gb|EEE86116.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 564

 Score =  184 bits (467), Expect = 2e-44
 Identities = 91/183 (49%), Positives = 126/183 (68%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           V D+ Y+  + +L +E+  ++   +L D +RRGF      LS ++     + RWRE E+L
Sbjct: 376 VKDSTYHAFLDLLSEEDQYEEGYEILGDMMRRGFRPGTVGLSKFILLLSRKRRWREVEDL 435

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
            DL++++G L DS  C   V+ YCSRR+I KA+ LH+K+E L+ +LD A Y+I L  L K
Sbjct: 436 LDLVLEKGLLPDSLCCCSLVEHYCSRRQIDKAVALHNKMEKLQASLDVATYNILLDGLVK 495

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
             RIEE ++VFDYMK  K +NSESF++ IRGLC  KE+RKAMKLHDEML++GLKPD+  Y
Sbjct: 496 NGRIEEVVRVFDYMKGLKLVNSESFTITIRGLCRAKEMRKAMKLHDEMLDMGLKPDKAAY 555

Query: 181 KRL 173
           KRL
Sbjct: 556 KRL 558


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  177 bits (448), Expect = 4e-42
 Identities = 89/183 (48%), Positives = 122/183 (66%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEEL 542
           + DN  +  V +L +++   +   ++ D +RRGF      LS Y+   C + RW+EAEEL
Sbjct: 405 IKDNASDAFVDLLSEKDQYAEGYEIVRDIMRRGFSPCTSSLSKYITLLCKKRRWKEAEEL 464

Query: 541 FDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFK 362
             +++++G L D+ S    VK YCS ++  KA+ LH+ LE L+ +LD   Y++ L  L K
Sbjct: 465 LYMVLEKGLLPDTLSFCSLVKHYCSSKQTDKALALHNTLEKLQASLDITAYNLLLGGLVK 524

Query: 361 EKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTY 182
           E R+EE+IKVFDYMK  K  NS SF+V+IRGLC  KELRKAMKLHDEML +GLKPD+ TY
Sbjct: 525 EGRVEESIKVFDYMKGLKLANSASFTVIIRGLCRAKELRKAMKLHDEMLNMGLKPDKPTY 584

Query: 181 KRL 173
           KRL
Sbjct: 585 KRL 587


>ref|XP_006285106.1| hypothetical protein CARUB_v10006439mg [Capsella rubella]
           gi|482553811|gb|EOA18004.1| hypothetical protein
           CARUB_v10006439mg [Capsella rubella]
          Length = 585

 Score =  172 bits (437), Expect = 8e-41
 Identities = 82/186 (44%), Positives = 125/186 (67%), Gaps = 3/186 (1%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE-NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEE 545
           + ++CY E    LC++ N  ++   LLVD I+RGF+   + LS  +   C + RWR AE+
Sbjct: 395 LDESCYTEFANALCRDDNSPEEELELLVDVIKRGFVPCTRRLSEVLASLCRKRRWRHAEK 454

Query: 544 LFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLF 365
           L D +M+     DS SCG  ++RYC   ++ KA+ LH++++ +KG+LD   Y+  L  L 
Sbjct: 455 LLDSVMEMEVYFDSFSCGILMERYCRSGKLDKAMELHERIKKMKGSLDVNAYNAVLDRLM 514

Query: 364 KEKR--IEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQ 191
             +R  +EEA++VF+YMK  K +NS+SF++MI+GLCH KE++KA + HDEML+LG+KPD 
Sbjct: 515 MRQREMVEEAVRVFEYMKEMKSVNSKSFTIMIQGLCHVKEMKKAKQSHDEMLKLGMKPDL 574

Query: 190 RTYKRL 173
            TYKR+
Sbjct: 575 ATYKRV 580


>ref|XP_006413812.1| hypothetical protein EUTSA_v10024760mg [Eutrema salsugineum]
           gi|557114982|gb|ESQ55265.1| hypothetical protein
           EUTSA_v10024760mg [Eutrema salsugineum]
          Length = 584

 Score =  171 bits (432), Expect = 3e-40
 Identities = 84/187 (44%), Positives = 123/187 (65%), Gaps = 4/187 (2%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE--NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAE 548
           + ++CY E    LC++  N S++   LL+D I+RGF+    +LS  +   C + RW  AE
Sbjct: 393 LDESCYKEFANALCRDDDNSSEEEGELLIDVIKRGFVPCTLKLSEVLASLCRKRRWNRAE 452

Query: 547 ELFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASL 368
           +L D +M+     DS SCG  ++RYC   ++ KA+ LH+K++ +KG+LD   Y+  L  L
Sbjct: 453 KLLDSVMEMEVHFDSFSCGLLMERYCRSGKLEKAMVLHEKIKKMKGSLDVNAYNAVLDRL 512

Query: 367 FKEKR--IEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPD 194
              +R  +EEA++VF+YMK    +NS+SF++MI GLC  KE++KAMK HDEML+LGLKPD
Sbjct: 513 MMRQRTMVEEAVQVFEYMKEMNTVNSKSFTIMIHGLCRVKEMKKAMKSHDEMLKLGLKPD 572

Query: 193 QRTYKRL 173
             TYKRL
Sbjct: 573 LVTYKRL 579


>sp|O49558.2|PP331_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21170
          Length = 585

 Score =  169 bits (428), Expect = 8e-40
 Identities = 82/186 (44%), Positives = 124/186 (66%), Gaps = 3/186 (1%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE-NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEE 545
           + ++CY E    LC++ N S++   LLVD I+RGF+    +LS  +   C + RW+ AE+
Sbjct: 395 LDESCYIEFANALCRDDNSSEEEEELLVDVIKRGFVPCTHKLSEVLASMCRKRRWKSAEK 454

Query: 544 LFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLF 365
           L D +M+     DS +CG  ++RYC   ++ KA+ LH+K++ +KG+LD   Y+  L  L 
Sbjct: 455 LLDSVMEMEVYFDSFACGLLMERYCRSGKLEKALVLHEKIKKMKGSLDVNAYNAVLDRLM 514

Query: 364 --KEKRIEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQ 191
             +++ +EEA+ VF+YMK    +NS+SF++MI+GLC  KE++KAM+ HDEML LGLKPD 
Sbjct: 515 MRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPDL 574

Query: 190 RTYKRL 173
            TYKRL
Sbjct: 575 VTYKRL 580


>ref|XP_006857674.1| hypothetical protein AMTR_s00061p00160470 [Amborella trichopoda]
           gi|548861770|gb|ERN19141.1| hypothetical protein
           AMTR_s00061p00160470 [Amborella trichopoda]
          Length = 372

 Score =  141 bits (356), Expect = 2e-31
 Identities = 68/177 (38%), Positives = 113/177 (63%)
 Frame = -3

Query: 703 NELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIMD 524
           N L+  L KE  S++V+ ++   IR+GF  +   +S++++ QC++G W+EA EL  ++++
Sbjct: 191 NVLLNALFKEEQSEEVNKVIKSVIRKGFYPDPLAISSHISSQCSKGGWQEANELLWVMLE 250

Query: 523 QGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIEE 344
           +G + +  +CG F++ YC    +  A++LH+KL  L   L+   Y+I L  L+   ++EE
Sbjct: 251 RGVMPNGFACGSFIRHYCEDGGLDYALSLHEKLVKLGNVLNAPSYNILLDQLYNGGKLEE 310

Query: 343 AIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           A ++FD+M+     +S SF  MI   C EK+  +A K+HDEML+ GLKPD+ TYKRL
Sbjct: 311 ASEMFDHMRNKNVTSSASFITMISWFCWEKKFSEARKMHDEMLKKGLKPDEATYKRL 367


>ref|XP_006826483.1| hypothetical protein AMTR_s00004p00243870 [Amborella trichopoda]
           gi|548830797|gb|ERM93720.1| hypothetical protein
           AMTR_s00004p00243870 [Amborella trichopoda]
          Length = 359

 Score =  141 bits (355), Expect = 2e-31
 Identities = 69/177 (38%), Positives = 108/177 (61%)
 Frame = -3

Query: 703 NELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIMD 524
           N L+  L KE PS++V+ ++   I +GF  +   +S+Y++ QC++G W+EA EL  + ++
Sbjct: 178 NVLLNALFKEEPSEEVNKVIKSVIEKGFYPDPLAISSYISAQCSKGGWQEANELLWVTLE 237

Query: 523 QGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIEE 344
           +G + D    G F++ YC    +  A++LH+K       L+   Y+I L  L+ E ++EE
Sbjct: 238 RGVMPDGFVWGSFIRHYCEDGHLDYALSLHEKFAKSGNVLNAPSYNILLNRLYNEGKLEE 297

Query: 343 AIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           A  +FDYM+     +S SF  MI   C EK+  +A K+HDEML+ GLKPD+ TYKRL
Sbjct: 298 ASGMFDYMRNKDVTSSASFMTMISWFCREKKFSEARKMHDEMLKKGLKPDEATYKRL 354


>ref|NP_193849.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332659015|gb|AEE84415.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 551

 Score =  112 bits (279), Expect = 2e-22
 Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 4/187 (2%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE-NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAE-GRWREAE 548
           + ++CY E    LC++ N S++   LLVD I+RG     KE  N          +WR  +
Sbjct: 395 LDESCYIEFANALCRDDNSSEEEEELLVDVIKRG-----KEDGNPQRSFLIRLWKWRSGK 449

Query: 547 ELFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASL 368
                                         + KA+ LH+K++ +KG+LD   Y+  L  L
Sbjct: 450 ------------------------------LEKALVLHEKIKKMKGSLDVNAYNAVLDRL 479

Query: 367 FKEKR--IEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPD 194
              ++  +EEA+ VF+YMK    +NS+SF++MI+GLC  KE++KAM+ HDEML LGLKPD
Sbjct: 480 MMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPD 539

Query: 193 QRTYKRL 173
             TYKRL
Sbjct: 540 LVTYKRL 546


>emb|CAA17536.1| putative protein [Arabidopsis thaliana] gi|7268914|emb|CAB79117.1|
           putative protein [Arabidopsis thaliana]
          Length = 534

 Score =  112 bits (279), Expect = 2e-22
 Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 4/187 (2%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE-NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAE-GRWREAE 548
           + ++CY E    LC++ N S++   LLVD I+RG     KE  N          +WR  +
Sbjct: 378 LDESCYIEFANALCRDDNSSEEEEELLVDVIKRG-----KEDGNPQRSFLIRLWKWRSGK 432

Query: 547 ELFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASL 368
                                         + KA+ LH+K++ +KG+LD   Y+  L  L
Sbjct: 433 ------------------------------LEKALVLHEKIKKMKGSLDVNAYNAVLDRL 462

Query: 367 FKEKR--IEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPD 194
              ++  +EEA+ VF+YMK    +NS+SF++MI+GLC  KE++KAM+ HDEML LGLKPD
Sbjct: 463 MMRQKEMVEEAVVVFEYMKEINSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLGLKPD 522

Query: 193 QRTYKRL 173
             TYKRL
Sbjct: 523 LVTYKRL 529


>ref|XP_002867861.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313697|gb|EFH44120.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 534

 Score =  111 bits (278), Expect = 2e-22
 Identities = 68/187 (36%), Positives = 101/187 (54%), Gaps = 4/187 (2%)
 Frame = -3

Query: 721 VSDNCYNELVIVLCKE-NPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAE-GRWREAE 548
           + ++CYNE    LC++ N S++   LLVD I+RG     KE  N          +WR  +
Sbjct: 378 LDESCYNEFANALCRDDNSSEEGEELLVDVIKRG-----KEDGNPQRSFLIRLWKWRSGK 432

Query: 547 ELFDLIMDQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASL 368
                                         + KA+ LH+K++ +KG+LD   Y+  L  L
Sbjct: 433 ------------------------------LEKALELHEKIKKMKGSLDVNAYNAVLDRL 462

Query: 367 FKEKR--IEEAIKVFDYMKACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPD 194
              ++  +EEA+ VF+YMK  K +NS+SF++MI+GLC  KE++KAM+ HDEML L +KPD
Sbjct: 463 MMRQKEMVEEAVGVFEYMKEMKSVNSKSFTIMIQGLCRVKEMKKAMRSHDEMLRLDMKPD 522

Query: 193 QRTYKRL 173
             +YKRL
Sbjct: 523 LVSYKRL 529


>ref|XP_004305215.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 761

 Score = 98.6 bits (244), Expect = 2e-18
 Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
 Frame = -3

Query: 706 YNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIM 527
           YN L+  LCKEN  ++ + L      +G I +   +++ +   C     + A ELF+ + 
Sbjct: 375 YNTLISTLCKENRVEEATKLARVLTSKGIIPDVCTVNSLIQGLCLNSNHKVAMELFEEMK 434

Query: 526 DQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIE 347
            +GC  D  +    +  YCSR ++ +A++L   +E      +  IY+  +    K KRIE
Sbjct: 435 MKGCQPDGFTYSLLIDSYCSRGKLEEALSLLKDMESSGCARNAVIYNTLIDGFCKNKRIE 494

Query: 346 EAIKVFDYMKACK-QLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           +A ++FD M+      NS +++ +I GLC  + + +A +L D+M+  GLKPD+ TY  L
Sbjct: 495 DAEEIFDQMELQGISRNSVTYNTLIDGLCQNRRVEEASQLMDQMIMEGLKPDKFTYNSL 553



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
 Frame = -3

Query: 703 NELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIMD 524
           N LV   CKE    +    +    + GF  +    +  V   C  G  + A E+ D+++ 
Sbjct: 271 NVLVNGFCKEGRVDEAFGFIEKMAKEGFSPDQYTFNTLVKGLCRVGHVKHALEIMDVMLQ 330

Query: 523 QGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIEE 344
           +G  LD  +    V   C   EI +A+ + D++     + +T  Y+  +++L KE R+EE
Sbjct: 331 EGFDLDIYTYNALVSGLCKLGEIEEAVDILDQMVSRDCSPNTVTYNTLISTLCKENRVEE 390

Query: 343 AIKVFDYMKACKQLNSESFSV--MIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           A K+   + + K +  +  +V  +I+GLC     + AM+L +EM   G +PD  TY  L
Sbjct: 391 ATKLARVLTS-KGIIPDVCTVNSLIQGLCLNSNHKVAMELFEEMKMKGCQPDGFTYSLL 448


>ref|XP_006341056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Solanum tuberosum]
          Length = 766

 Score = 97.4 bits (241), Expect = 4e-18
 Identities = 53/179 (29%), Positives = 92/179 (51%), Gaps = 1/179 (0%)
 Frame = -3

Query: 706 YNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIM 527
           YN ++  LCKEN  Q+ +        +GF+ +    ++ +   C  G +  A E+F+ + 
Sbjct: 382 YNTIISALCKENQVQEATEFARVLTSKGFLPDVCTFNSLIQGLCFTGSFNVAMEMFEEMK 441

Query: 526 DQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIE 347
           D+GC  D  +    +   C++R IG+A+ L   +E          Y+  +    K+K+IE
Sbjct: 442 DKGCQPDEFTYNILIDCLCAKRRIGEALNLLKDMESSGCARSVITYNTLIDGFCKDKKIE 501

Query: 346 EAIKVFDYMK-ACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           EA ++FD M+      N  +++ +I GLC  K +  A +L D+M+  GLKPD+ TY  +
Sbjct: 502 EAEEIFDQMELQGVSRNLVTYNTLIDGLCKSKRVEDAAQLMDQMILEGLKPDKFTYNSI 560



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
 Frame = -3

Query: 703 NELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIMD 524
           N L+   CKE    +  N + D   RGF  +    +  +N  C  G   +A ++ DL++ 
Sbjct: 278 NLLIHGYCKEGRIDEALNFVQDMCSRGFSPDQFTFNTLINGLCKAGHAVQALDILDLMLQ 337

Query: 523 QGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIEE 344
            G   D  +    +   C   E+ +A+ L +++     T +T  Y+  +++L KE +++E
Sbjct: 338 DGFDPDVYTYNILISGLCEVGEVQEAMELLNQMLVRDCTPNTITYNTIISALCKENQVQE 397

Query: 343 AIKVFDYMKACKQLNSE--SFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           A + F  +   K    +  +F+ +I+GLC       AM++ +EM + G +PD+ TY  L
Sbjct: 398 ATE-FARVLTSKGFLPDVCTFNSLIQGLCFTGSFNVAMEMFEEMKDKGCQPDEFTYNIL 455


>ref|XP_004296042.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Fragaria vesca subsp.
           vesca]
          Length = 563

 Score = 96.3 bits (238), Expect = 9e-18
 Identities = 54/172 (31%), Positives = 98/172 (56%), Gaps = 1/172 (0%)
 Frame = -3

Query: 706 YNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIM 527
           Y+ LV  LCKE    + ++++   IR+     A   S+ ++  C  G   EA ++FDL++
Sbjct: 164 YSVLVDGLCKEGKVVEANSVVEIMIRKDIEPNAITYSSLMDGYCLRGEMGEARKIFDLML 223

Query: 526 DQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIE 347
            +GC++D  SC   +  YC  ++I +AI L +++  L+   DT  YSI +    K  R++
Sbjct: 224 RKGCMVDVWSCTILINGYCKHKKIDQAIELFEEMLRLELVPDTYTYSILIDGFCKAGRMQ 283

Query: 346 EAIKVFDYMKACKQL-NSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPD 194
           EA K+F  + +C  L N +++++++ GLC  ++L +AM L  EM +  ++ D
Sbjct: 284 EAEKLFSRLLSCGLLPNVQTYAILLDGLCSSQQLSRAMDLLREMEDKKMELD 335



 Score = 79.0 bits (193), Expect = 1e-12
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
 Frame = -3

Query: 682 CKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIMDQGCLLDS 503
           CK     +   L  + +R   + +    S  ++  C  GR +EAE+LF  ++  G L + 
Sbjct: 242 CKHKKIDQAIELFEEMLRLELVPDTYTYSILIDGFCKAGRMQEAEKLFSRLLSCGLLPNV 301

Query: 502 TSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIEEAIKVFDY 323
            +    +   CS +++ +A+ L  ++ED K  LD  IY++ +  + K  ++E A   F  
Sbjct: 302 QTYAILLDGLCSSQQLSRAMDLLREMEDKKMELDIVIYTVIIEGMCKAGKLESATDFFSS 361

Query: 322 MKA-CKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYK 179
           + +   Q N  +++VMI GLC    L +A KL  EM   G  PD  TYK
Sbjct: 362 LSSKGVQPNVRTYNVMINGLCKGGLLVEAEKLLREMGAKGCSPDSCTYK 410



 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
 Frame = -3

Query: 706 YNELVIVLCKENPSQKVSNLLVDTIRRGFIFEAKELSNYVNKQCAEGRWREAEELFDLIM 527
           Y+ ++  LCK+       +L  + I RG        ++ +   C  G++ EA +L   + 
Sbjct: 94  YSTIIDSLCKDTLVVDAMSLFSEMISRGIAPNVVTYTSLIQGVCNTGQFEEATKLLYEMA 153

Query: 526 DQGCLLDSTSCGYFVKRYCSRREIGKAITLHDKLEDLKGTLDTAIYSIFLASLFKEKRIE 347
            +    +  +    V   C   ++ +A ++ + +       +   YS  +        + 
Sbjct: 154 SRNIYPNVVTYSVLVDGLCKEGKVVEANSVVEIMIRKDIEPNAITYSSLMDGYCLRGEMG 213

Query: 346 EAIKVFDYM--KACKQLNSESFSVMIRGLCHEKELRKAMKLHDEMLELGLKPDQRTYKRL 173
           EA K+FD M  K C  ++  S +++I G C  K++ +A++L +EML L L PD  TY  L
Sbjct: 214 EARKIFDLMLRKGC-MVDVWSCTILINGYCKHKKIDQAIELFEEMLRLELVPDTYTYSIL 272