BLASTX nr result
ID: Rehmannia25_contig00020321
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00020321
(1462 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 708 0.0
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 706 0.0
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 694 0.0
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 689 0.0
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 682 0.0
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 676 0.0
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 674 0.0
gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlise... 668 0.0
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 663 0.0
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 662 0.0
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 661 0.0
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 660 0.0
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 659 0.0
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 648 0.0
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha... 647 0.0
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 645 0.0
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 644 0.0
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 644 0.0
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 643 0.0
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 642 0.0
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 708 bits (1828), Expect = 0.0
Identities = 340/486 (69%), Positives = 404/486 (83%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFS+S+QT+EV + ++ +PDIE+ SDGV YCFSDGIGKIS AFA+ + +K GL H P
Sbjct: 513 GQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTP 572
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKF+S N MLNITKWS++ PCYLNREI+ L
Sbjct: 573 SAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVIL 632
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGVED F + D L LG++LT EAA++VLES GGGE+K++L+RMLLQGY P
Sbjct: 633 LSTLGVEDKAFEDLLDNHLCLLGKMLTTNEAALDVLESMGGGEVKKILMRMLLQGYAPNQ 692
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQSH ENQ++DLRSR RIF+PKGR+LVGCLDETGIL+YGQVYVR+TM KAE+Q
Sbjct: 693 EPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILKYGQVYVRITMTKAELQ 752
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G Q FF++VDE T+ NPCLHPGDVRVLEAV++V L+E VDC++FPQK
Sbjct: 753 -NGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQK 811
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDLYFI WD++LIP +TVTPMDYTGRRPRIMDH+VTLEEIQ+FF
Sbjct: 812 GERPHPNECSGGDLDGDLYFICWDESLIPCQTVTPMDYTGRRPRIMDHEVTLEEIQRFFV 871
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMISDTLG ISTAHL+HADREPDKAL+SKCL+LA LHSMAVDFAKTGA AEMPR LKPR
Sbjct: 872 DYMISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPR 931
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMERW+KPMY+S G LGKLYR ++ + ++ +D DAYD DL+V+GY++
Sbjct: 932 EFPDFMERWDKPMYISEGVLGKLYRGVMKSYIRRNSDDLSADRAIQDAYDHDLLVEGYEA 991
Query: 1443 FLKTAE 1460
F +TA+
Sbjct: 992 FTETAK 997
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 706 bits (1822), Expect = 0.0
Identities = 336/486 (69%), Positives = 404/486 (83%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFS+S+QT+EV + ++ +PDIE+ SDGV YCFSDGIGKIS AFA+ + +K GL H P
Sbjct: 513 GQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFARQVAQKCGLNHTP 572
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKF+S N MLNITKWS++ PCYLNREI+ L
Sbjct: 573 SAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVIL 632
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGVED + D L+ LG++LT EAA++VLES GGG++K++L+RMLLQGY P
Sbjct: 633 LSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVLESMGGGDVKKILMRMLLQGYAPNR 692
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQSH ENQ++DLRSR RIF+PKGR+LVGCLDETGIL+YG+VYVR+TM KAE+Q
Sbjct: 693 EPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGCLDETGILKYGEVYVRITMTKAELQ 752
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G Q FF++VDE T+ NPCLHPGDVRVLEAV++V L+E VDC++FPQ
Sbjct: 753 -NGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRVLEAVYEVTLEEKTWVDCIIFPQN 811
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDLYFI WD++LIP +TVTPMDYTGRRPRIMDH+VTLEEIQ+FF
Sbjct: 812 GERPHPNECSGGDLDGDLYFICWDESLIPHQTVTPMDYTGRRPRIMDHEVTLEEIQRFFV 871
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMISDTLG ISTAHL+HADREPDKAL+SKCL+LA LHSMAVDFAKTGA AEMPR LKPR
Sbjct: 872 DYMISDTLGAISTAHLVHADREPDKALNSKCLQLATLHSMAVDFAKTGAAAEMPRFLKPR 931
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMERW+KPMY+S G LGKLYR ++ + ++ +D DAYD DL+V+GY++
Sbjct: 932 EFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSDDLSTDRAIQDAYDHDLLVEGYEA 991
Query: 1443 FLKTAE 1460
F++TA+
Sbjct: 992 FIETAK 997
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 694 bits (1790), Expect = 0.0
Identities = 338/486 (69%), Positives = 400/486 (82%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QTL V +D++ IPD+E+ +DG+ YCFSDGIGKIS +FA+ + +K GL P
Sbjct: 509 GQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSSFARQVAQKCGLKETP 568
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI V+R SFRKL+LRSSMLKF+SSN MLN+TKWS S PCYLNREI++L
Sbjct: 569 SAFQIRYGGYKGVIAVNRSSFRKLSLRSSMLKFESSNRMLNVTKWSGSMPCYLNREIVSL 628
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LS+LGV+D FLA+ EQL LG++ T EAA+NVLE+ G + +L++MLLQGY+P
Sbjct: 629 LSSLGVKDESFLALLREQLLLLGKMRTNREAALNVLENLNGSDSSNILVKMLLQGYEPNA 688
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS ++QS+ ENQL+DL++R RIFVPKG+VL+GCLDETGILEYGQVYVR+TM KAE++
Sbjct: 689 EPYLSMMIQSYYENQLSDLKTRCRIFVPKGKVLIGCLDETGILEYGQVYVRLTMKKAELE 748
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G NQ FFR+VD+ TS NPCLHPGDVRVLEAV+D KL+E LVDCLVFPQK
Sbjct: 749 AG-NQSFFRKVDDETSIVVGKVVVTKNPCLHPGDVRVLEAVYDAKLEEEGLVDCLVFPQK 807
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDL+FISWD NLIPPRT PMDY GRRPRIMDHDVTLEEIQKFF
Sbjct: 808 GERPHPNECSGGDLDGDLFFISWDTNLIPPRTTAPMDYIGRRPRIMDHDVTLEEIQKFFV 867
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHLIHADREP+KA S CL+LA LHSMAVDFAKTGAPAEMPRAL+PR
Sbjct: 868 DYMINDTLGGISTAHLIHADREPEKAFSENCLQLATLHSMAVDFAKTGAPAEMPRALRPR 927
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
++PDFMER ++PMYVS+GALGKLYRATV+ Q +N S+ AYD DL V+G++
Sbjct: 928 DYPDFMERLDRPMYVSNGALGKLYRATVESESQGSSNLVWSEKTAEAAYDRDLEVNGFEE 987
Query: 1443 FLKTAE 1460
F+ AE
Sbjct: 988 FIALAE 993
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 689 bits (1779), Expect = 0.0
Identities = 337/488 (69%), Positives = 399/488 (81%), Gaps = 2/488 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFS+S QT+EV ++ +PDIE+ SDGV YCFSDGIGKIS AFA + +K GL + P
Sbjct: 514 GQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGLSYTP 573
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKF+S N MLNITKWS++ PCYLNREI+ L
Sbjct: 574 SAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNITKWSDAMPCYLNREIVIL 633
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGVED VF + D L LG++LT EAA++VLES GGG++K++L+RML QGY P
Sbjct: 634 LSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIGGGDVKKILMRMLHQGYAPNL 693
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQSH ENQL+DLRSR RIF+ KGRVLVGCLDETGIL YGQVY R+TM KAE+Q
Sbjct: 694 EPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDETGILNYGQVYARITMTKAELQ 753
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
Q FF++VDE T+ NPCLHPGDVRVLEAV++V L+E VDC++FPQK
Sbjct: 754 -SAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVRVLEAVYEVALEEKAWVDCIIFPQK 812
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDLYFISWD+NLIP +TVTPMDYTGRR RIMDH+VTL+EIQ+FF
Sbjct: 813 GERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTGRRTRIMDHEVTLQEIQRFFV 872
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMISDTLG ISTAHL+HADREPDKAL+ KCL+LA LHSMAVDFAKTGA AEMPR LKPR
Sbjct: 873 DYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSMAVDFAKTGAAAEMPRFLKPR 932
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPS--DAYDPDLIVDGY 1436
EFPDF+ERW+KPMY+S G LGKLYRA V +++N+D ++ + DAYD L+ DGY
Sbjct: 933 EFPDFLERWDKPMYISEGVLGKLYRAIVN--SSVRSNSDDLGSVRAIQDAYDHALLFDGY 990
Query: 1437 DSFLKTAE 1460
++F++TA+
Sbjct: 991 EAFIETAK 998
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 682 bits (1761), Expect = 0.0
Identities = 334/486 (68%), Positives = 398/486 (81%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+QTL V +D++ IPDIE+ SDG YCFSDGIGKIS +FAK + +K GL P
Sbjct: 511 GQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTP 570
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LRSSMLKF+S N MLN+TKWSES PCYLNREI++L
Sbjct: 571 SAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSL 630
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGVED F A+ +EQ+ L ++LT +AA++VLES GG + K +L +MLLQGY+P
Sbjct: 631 LSTLGVEDENFEALLNEQMHLLDKMLTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNV 690
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ++ E+QL+D+R+R RIFVPK RVL+GCLDETGIL YGQVYVRVTM KAE +
Sbjct: 691 EPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHK 750
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
C NQ FF++VD+ TS NPCLHPGD+RVL+AV++V+L+E LVDC++FPQK
Sbjct: 751 CR-NQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQK 809
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +FI WD+ LIP +T PMDYT RRPRIMDHDVTLEEIQKFF
Sbjct: 810 GERPHPNECSGGDLDGDQFFICWDEGLIPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFV 869
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADREP+KA S KCLELA LHSMAVDFAKTGAPAEMPR LKP+
Sbjct: 870 DYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKPK 929
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER +KPMY+S+GALGKLYRAT+ K++ S IP AYD DL VDG+++
Sbjct: 930 EFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFET 989
Query: 1443 FLKTAE 1460
FL+ A+
Sbjct: 990 FLEIAK 995
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 676 bits (1743), Expect = 0.0
Identities = 330/486 (67%), Positives = 395/486 (81%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QTL V +D++ IPD+E+ SDG YCFSDGIGKIS +FA+ + +K GL H P
Sbjct: 527 GQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFARQVAQKCGLSHTP 586
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKF+S N MLN+TKWSES PC+LNREII+L
Sbjct: 587 SAFQIRYGGYKGVIAVDRNSFRKLSLRRSMLKFESRNRMLNVTKWSESMPCFLNREIISL 646
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D VF AMQ +QL LG++L EAA++VL+ G + K +L++MLLQGY+P
Sbjct: 647 LSTLGVKDDVFEAMQQQQLILLGKMLINREAALDVLQKLNGVDSKNILVKMLLQGYEPNV 706
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L SH ENQL+DL+SR RI+VPKGR+L+GC DETGIL YGQV+VRVTM + E++
Sbjct: 707 EPYLSMMLLSHHENQLSDLKSRCRIYVPKGRLLIGCFDETGILNYGQVFVRVTMTREELE 766
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
+Q FF RVD+ TS NPCLHPGDVRVLEAV+++KL+E + VDC++FPQK
Sbjct: 767 -SKDQSFFHRVDDKTSIVKGKVLVTKNPCLHPGDVRVLEAVYEMKLEEKDYVDCIIFPQK 825
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD++FISWD++LIP T PMDYTGRR RIMDHDVTLEEI KFF
Sbjct: 826 GERPHPNECSGGDLDGDIFFISWDNDLIPCETEPPMDYTGRRSRIMDHDVTLEEIHKFFV 885
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADR+PDKA SSKCL LA LHSMAVDFAKTGAPAEMP ALKP+
Sbjct: 886 DYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKPK 945
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER +KP Y+S G LGKLYRAT+ I Q+++NA S+ I +YD DL VDG+++
Sbjct: 946 EFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFEA 1005
Query: 1443 FLKTAE 1460
FL AE
Sbjct: 1006 FLGVAE 1011
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 674 bits (1739), Expect = 0.0
Identities = 331/486 (68%), Positives = 393/486 (80%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QTL V +D++ IPD+E SDGV YCFSDGIGKIS +FA+ + +K GL P
Sbjct: 512 GQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKISLSFARKVAQKCGLDQTP 571
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VD +SFRKL+LRSSMLKF+S N MLN+TKWS++ PCYLNREII+L
Sbjct: 572 SAFQIRYGGYKGVIAVDCRSFRKLSLRSSMLKFESKNRMLNVTKWSDAMPCYLNREIISL 631
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D F A+Q+EQL+ LG++ T+ AA+NV E G + K L++MLL GY+P
Sbjct: 632 LSTLGVKDETFEALQEEQLRLLGKMRTERGAALNVFERLNGADSKNTLVKMLLHGYEPNA 691
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ++ EN L+DL+SR RIFVPKGRVLVGCLDETG L+YGQVYVR+TM KAE +
Sbjct: 692 EPYLSMMLQAYYENHLSDLKSRCRIFVPKGRVLVGCLDETGNLDYGQVYVRITMTKAEQE 751
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G +Q FF++VDE T NPCLHPGDVRVL+AV+DV L+E N+VDCL+FPQK
Sbjct: 752 MG-DQSFFQKVDETTLVVTGKVVVTKNPCLHPGDVRVLDAVYDVVLEEKNMVDCLIFPQK 810
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDL+FISWD +L+P TV PMDY+ RRPRIMDH VTLEEIQKFF
Sbjct: 811 GERPHPNECSGGDLDGDLFFISWDKDLVPSHTVPPMDYSARRPRIMDHTVTLEEIQKFFV 870
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+D LG ISTAHL+HAD EPDKAL+ KCL+LA+LHSMAVDFAKTGAPAEM R LKP+
Sbjct: 871 DYMINDNLGAISTAHLVHADHEPDKALNPKCLQLADLHSMAVDFAKTGAPAEMSRTLKPK 930
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER +KPMY+S+GALGKLYRA V + Q KTN S+ I AYD DL VDG +S
Sbjct: 931 EFPDFMERVDKPMYISNGALGKLYRAVVGSVLQEKTNLVWSEQIAEAAYDQDLEVDGLES 990
Query: 1443 FLKTAE 1460
L+ A+
Sbjct: 991 VLEVAK 996
>gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlisea aurea]
Length = 1094
Score = 668 bits (1723), Expect = 0.0
Identities = 336/486 (69%), Positives = 394/486 (81%), Gaps = 1/486 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QT+EV P + + IPD+E SDGVKYCFSDGIGKIS +FA++I LGL H+P
Sbjct: 494 GQLFSSSRQTIEVSPGETELIPDVECFSDGVKYCFSDGIGKISSSFAQEISSMLGLSHVP 553
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKG++VV+R S KLALRSSMLKF+S+N MLN+TKWSESQPCYLNREII L
Sbjct: 554 SAFQIRYGGYKGIVVVNRHSRYKLALRSSMLKFESNNRMLNVTKWSESQPCYLNREIIVL 613
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D+ L MQ QL+ LG +L ++AA++VLES+G GE K +L RML GY P
Sbjct: 614 LSTLGVKDAALLEMQQRQLEFLGSVLVDSQAAMSVLESSGMGESKSILPRMLSLGYKPTE 673
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYL +L+S+LENQ+ADLR+R R+FVPKGRVL+G LDE G LEYGQVYVRVTMNK+EV
Sbjct: 674 EPYLHMMLRSYLENQIADLRTRCRVFVPKGRVLLGVLDEFGRLEYGQVYVRVTMNKSEV- 732
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G Q +FR VD N+S NPCLHPGDVRVLEAV D +L NLVDCLVFPQK
Sbjct: 733 -GEKQPYFRSVDGNSSVVVGKVVITKNPCLHPGDVRVLEAVCDPELVSENLVDCLVFPQK 791
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G RPHPNECSGGDLDGDLYF+SWD +L+PPRTV PMDYTGRRPRIMDHDVT++EIQ+FFA
Sbjct: 792 GHRPHPNECSGGDLDGDLYFVSWDTDLVPPRTVDPMDYTGRRPRIMDHDVTIQEIQRFFA 851
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYM+SDTLG IS AHL+HADREP+KALSSKCLELA LHS AVD+AK+GAPA MPRAL PR
Sbjct: 852 DYMVSDTLGAISNAHLVHADREPEKALSSKCLELAALHSTAVDYAKSGAPAAMPRALLPR 911
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDA-YDPDLIVDGYD 1439
E+PDFMER KP Y S G LGKLYRA ++FI Q + ++ IPS +D DL+ DG++
Sbjct: 912 EYPDFMERVGKPTYPSTGPLGKLYRAALRFIGQRNS----ANEIPSRGFFDGDLVADGHE 967
Query: 1440 SFLKTA 1457
+FL+TA
Sbjct: 968 AFLETA 973
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 663 bits (1711), Expect = 0.0
Identities = 327/486 (67%), Positives = 383/486 (78%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QTL V RD++ IPDIE+ +DG+ YCFSDGIGKIS +FA+ + K G+ HIP
Sbjct: 511 GQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIP 570
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKF+S N MLN+TK +S PCYLNREI TL
Sbjct: 571 SAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATL 630
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D F A+Q EQL L R+LT + A+NVLE+ G + +L++ML GY+P
Sbjct: 631 LSTLGVKDESFEALQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNI 690
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ+H N +DLRSR RIFVPKGR+L+GCLDETGIL YGQVY +T+ K+E+Q
Sbjct: 691 EPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQ 750
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
NQ +F +DE S NPCLHPGDVRVLEA++ V+L+E LVDCL+FPQK
Sbjct: 751 -SRNQNYFHTIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQK 809
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G RPH NECSGGDLDGDLYFISWD+NLIPP+T PMDYTGRRPRIMDHDV LEEIQKFF
Sbjct: 810 GARPHTNECSGGDLDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFV 869
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADREP KALS+KCLELA LHSMAVDFAKTGAPAEMPR LKPR
Sbjct: 870 DYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPR 929
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER++KPMY+S LGKLYRA V+ I Q ++ S+ YD DL VDG+++
Sbjct: 930 EFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEA 989
Query: 1443 FLKTAE 1460
FL+ AE
Sbjct: 990 FLEIAE 995
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 662 bits (1707), Expect = 0.0
Identities = 323/485 (66%), Positives = 385/485 (79%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QT V P+D++ IPDIE+ SDG+ YCFSDGIGKIS +FA+ + +K GL P
Sbjct: 361 GQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGLNRTP 420
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SM KF+S N MLN+TKWSES PCYLNREIITL
Sbjct: 421 SAFQIRYGGYKGVIAVDRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITL 480
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
L+TLGV+D +F +Q +QLQ L R+LT E+A+NVLE+ K +LI+ML+QGY+P
Sbjct: 481 LTTLGVKDEIFEGLQQQQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNV 540
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ++ EN L +LRSR RIFVPKGR+L+GCLDET IL+YGQVYVR+TM KAE+Q
Sbjct: 541 EPYLSMMLQAYHENLLVELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQ 600
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
+Q F RVDE T+ NPCLHPGD+RVLEAV++V+L+E LVDC++FPQK
Sbjct: 601 -DADQASFHRVDETTAVVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQK 659
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +FISWD LIP T +PMDY GRRPR MDHDVTLEEIQKFF
Sbjct: 660 GERPHPNECSGGDLDGDQFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFI 719
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADREPDKA SSKCL+LA LHSMAVDFAKTGAPAEMP+ALKP+
Sbjct: 720 DYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPK 779
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER +K MY+S G LGKLYR T+ Q ++ ++ I YD DL V G++
Sbjct: 780 EFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEE 839
Query: 1443 FLKTA 1457
F++ A
Sbjct: 840 FVEIA 844
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 661 bits (1706), Expect = 0.0
Identities = 323/486 (66%), Positives = 385/486 (79%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS QTL V +D++ IPDIE +DGV YCFSDGIGKIS +FA+ + +K GL P
Sbjct: 514 GQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISLSFARQVAQKCGLNDTP 573
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LRSSMLKFDS N MLN+TKWS S PC+LNREIITL
Sbjct: 574 SAFQIRYGGYKGVIAVDRNSFRKLSLRSSMLKFDSDNRMLNVTKWSSSMPCFLNREIITL 633
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
+STLGVED F A+Q EQL LGR+ A++ LE G + +L+++LLQGY+P
Sbjct: 634 MSTLGVEDEAFEALQQEQLDLLGRMRKDRNVALSSLEKLSGADSNNILVKLLLQGYEPNL 693
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ+H E+ LADL+SR R++VPKGR+LVGCLDETG L YGQVY+R+TM KAE +
Sbjct: 694 EPYLSMMLQAHYEHHLADLKSRCRMYVPKGRILVGCLDETGTLNYGQVYLRITMTKAEQE 753
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
G +Q FF+RVDE T NPCLHPGD+RVLEAV+DV L+E N+VDC++FPQK
Sbjct: 754 MG-HQSFFQRVDEATCIVTGKVVVTKNPCLHPGDIRVLEAVYDVGLEEKNMVDCILFPQK 812
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGDL+FISWD +LIPP TV PMDY+ RRPR MDHDVTLEEIQKFF
Sbjct: 813 GERPHPNECSGGDLDGDLFFISWDKSLIPPTTVPPMDYSARRPRNMDHDVTLEEIQKFFV 872
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+D LG ISTAHL+H+D EP+KA+S KCLELA+LHSMAVDFAKTGAPAE+ LKP+
Sbjct: 873 DYMINDNLGAISTAHLVHSDHEPEKAMSKKCLELADLHSMAVDFAKTGAPAELSWILKPK 932
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER E+PMY+S+GALGKLYRA + Q +T S +AYD +L V G++S
Sbjct: 933 EFPDFMERVERPMYISNGALGKLYRAIRSSVVQEQTIVVWSQQRAEEAYDRELEVQGFES 992
Query: 1443 FLKTAE 1460
FL+ AE
Sbjct: 993 FLEMAE 998
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 660 bits (1703), Expect = 0.0
Identities = 323/487 (66%), Positives = 393/487 (80%), Gaps = 2/487 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPH-- 176
GQLFSSS QT E+ P+D+D IPDIE+ SDG+ YCFSDGIGKIS +FAK + +KL L
Sbjct: 514 GQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGIGKISLSFAKQLAQKLKLDQSR 573
Query: 177 IPSAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREII 356
IPSAFQIRYGGYKGVI VDR SFRKL++R+SMLKF+S N ML +TKWSES PC+LNREII
Sbjct: 574 IPSAFQIRYGGYKGVIAVDRHSFRKLSMRNSMLKFESKNRMLCVTKWSESMPCFLNREII 633
Query: 357 TLLSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDP 536
+LLSTLGV+D LAMQ+EQLQ LG++LT EAA++VLES G + + +L++ML Y+P
Sbjct: 634 SLLSTLGVKDEALLAMQEEQLQLLGKMLTDREAALDVLESLSGADSRSILVKMLNGFYEP 693
Query: 537 KNEPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAE 716
+EPYLS +L++H QL+DL+SR RIFVPKGRVL+GCLDETGIL YGQV+VR+T+ K +
Sbjct: 694 NSEPYLSMMLKAHYAYQLSDLKSRCRIFVPKGRVLIGCLDETGILNYGQVFVRITVTKTK 753
Query: 717 VQCGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFP 896
+ G D++T NPCLHPGD+RVL+A+++ +L+E L DCLVFP
Sbjct: 754 EKIGDENLQNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAIYNEELEEKGLRDCLVFP 813
Query: 897 QKGDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKF 1076
QKG RPHPNECSGGDLDGDL+FISWD +LIPP+T PMDYTGRRPRIMDH VTLEEI +F
Sbjct: 814 QKGPRPHPNECSGGDLDGDLFFISWDKDLIPPQTDNPMDYTGRRPRIMDHKVTLEEIHQF 873
Query: 1077 FADYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALK 1256
F DYMI+DTLG ISTAHL+HADREP+KA S KCLELA LHSMAVDFAKTGAPAEMPRALK
Sbjct: 874 FVDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALK 933
Query: 1257 PREFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGY 1436
PREFPDFMER++KPMY+S+G LGKLYRA V+ Q+++N LS+ +AYD L V+G+
Sbjct: 934 PREFPDFMERFDKPMYISNGVLGKLYRALVESTTQVRSNIVLSEKFAEEAYDHQLEVNGF 993
Query: 1437 DSFLKTA 1457
++FL+TA
Sbjct: 994 EAFLETA 1000
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 659 bits (1700), Expect = 0.0
Identities = 323/485 (66%), Positives = 382/485 (78%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+QT V +D++ IPDIE+ +DG+ YCFSDGIGKIS +FAK + K GL H P
Sbjct: 506 GQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTP 565
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGV+ VDR SFRKL+LRSSMLKFDS N MLN+TKWSES PCYLNREII+L
Sbjct: 566 SAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISL 625
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV D +F A+Q +QL L ++LT E+A++VLE+ + K +L++MLLQGY+P
Sbjct: 626 LSTLGVADEIFQALQQKQLYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNV 685
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +LQ++ EN L +LRSR RIFVPKGR+L+GCLDE+GIL+YGQVYVR+TM KAE+Q
Sbjct: 686 EPYLSMMLQAYHENSLMELRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQ 745
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
C +Q FFR+VDE+TS NPCLHPGD+RVLEAV+DV+L+E LVDC++FPQ
Sbjct: 746 C-CDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQN 804
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G RPHPNECSGGDLDGD +FISWD+ L+P T PMDY G R RIMDH+VTLEEIQ+FF
Sbjct: 805 GGRPHPNECSGGDLDGDQFFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFV 864
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HAD EPDKA S KCL+LA LHSMAVDFAKTGAPAEMP LKPR
Sbjct: 865 DYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPR 924
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFMER EK MY+S G LGKLYR Q ++N S I YD DL V G++
Sbjct: 925 EFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFED 984
Query: 1443 FLKTA 1457
FL A
Sbjct: 985 FLGIA 989
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 648 bits (1672), Expect = 0.0
Identities = 318/486 (65%), Positives = 381/486 (78%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+ TL V +D++ I DIE+ +DG+ YCFSDGIGKIS FA+ + K GL HIP
Sbjct: 512 GQLFSSSMPTLVVPVQDVEIIDDIEVKTDGINYCFSDGIGKISLPFARQVAEKCGLNHIP 571
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGV+ VDR SF K++LR SMLKF+S MLN+TKWSES PC+LNREI+TL
Sbjct: 572 SAFQIRYGGYKGVVAVDRNSFWKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTL 631
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
STLG++D VF MQ+EQL LG++LT EAA++ L+S GG K +L+ ML Q Y+P
Sbjct: 632 FSTLGIKDEVFERMQEEQLCLLGKMLTNREAALDTLQSLGGVNSKNILVEML-QFYEPNV 690
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
+PYLS +LQ+H EN L+DL+SR RIFVPKGR+L+GCLDETG L YGQVY+ + M KAE++
Sbjct: 691 QPYLSMMLQAHYENLLSDLKSRCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELE 750
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
C +Q +FR+VDE T+ NPCLHPGDVRVLEAV++ +L+E LVDCLVFPQK
Sbjct: 751 CA-DQSYFRKVDEETAIVIGKVVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQK 809
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +FISWD +LIP +T PMDYTGRRPRIMDH+VTLEEIQKFF
Sbjct: 810 GERPHPNECSGGDLDGDQFFISWDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFV 869
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADREPDKA S CL LA LHSMAVDFAKTGAPAEMPRALKPR
Sbjct: 870 DYMINDTLGAISTAHLVHADREPDKACSENCLALATLHSMAVDFAKTGAPAEMPRALKPR 929
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFM+R KPMY S G LGKLYRAT+ Q ++ + + YD DL V+G++S
Sbjct: 930 EFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQTRSKFVWTKEMAELVYDHDLEVNGFES 989
Query: 1443 FLKTAE 1460
+ AE
Sbjct: 990 LISVAE 995
>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical
proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
2 [Arabidopsis thaliana]
Length = 1133
Score = 647 bits (1669), Expect = 0.0
Identities = 310/486 (63%), Positives = 381/486 (78%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFS+S QTL V +D++ IPDIE+ +DG YCFSDGIGKIS AFAK + +K GL H+P
Sbjct: 519 GQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVP 578
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRKL+LR SMLKFDS+N MLN+T+W+ES PC+LNREII L
Sbjct: 579 SAFQIRYGGYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICL 638
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLG+ED++F AMQ L LG +L +AA+NVL+ G K +L++MLLQGY P +
Sbjct: 639 LSTLGIEDAMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSS 698
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L+ H E+QL++L+SR RI VPKGR+L+GC+DE GILEYGQVYVRVT+ KAE++
Sbjct: 699 EPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELK 758
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
+Q +FR++DE TS NPCLHPGD+RVL+A+++V +E +DC++FPQK
Sbjct: 759 -SRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQK 817
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +F+SWD+ +IP PMDY G RPR+MDHDVTLEEI KFF
Sbjct: 818 GERPHPNECSGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFV 877
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMISDTLG ISTAHL+HADR+P+KA S KCLELANLHS AVDFAKTGAPAEMP ALKPR
Sbjct: 878 DYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPR 937
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDF+ER+EKP Y+S GKLYRA + Q K A+ D + AYD L G++S
Sbjct: 938 EFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTV---AYDVTLEEAGFES 994
Query: 1443 FLKTAE 1460
F++TA+
Sbjct: 995 FIETAK 1000
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 645 bits (1665), Expect = 0.0
Identities = 318/487 (65%), Positives = 385/487 (79%), Gaps = 2/487 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPH-- 176
GQLFSSS QT E+ P+D+D IPDIEI SDG+ YCFSDGIGKIS +FA+ + KL L
Sbjct: 515 GQLFSSSRQTFEMAPQDVDLIPDIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENR 574
Query: 177 IPSAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREII 356
IPSAFQIRYGGYKGVI VDR SF+KL+LR SMLKF+S N ML +TKWSES PC+LNREII
Sbjct: 575 IPSAFQIRYGGYKGVIAVDRHSFKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREII 634
Query: 357 TLLSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDP 536
+LLSTLG++D LA+Q++QLQ LG++LT EAA++VLES G + +L++ML + Y+P
Sbjct: 635 SLLSTLGIKDEALLALQEDQLQLLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEP 694
Query: 537 KNEPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAE 716
+EPYLS +L++H QL+DL+SR RIFVPKGRVL+GCLDETG+L YGQV+VR+T+ K +
Sbjct: 695 NSEPYLSMMLKAHYTYQLSDLKSRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTK 754
Query: 717 VQCGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFP 896
+ G D++T NPCLHPGD+RVL+AV+ +L+E L DCLVFP
Sbjct: 755 EKFGDENLRNVDGDDSTRIIVGKVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFP 814
Query: 897 QKGDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKF 1076
QKG RPHPNECSGGDLDGDL+FISWD +LIP +T PMDYTGRRPRIMDH VTLEEI +F
Sbjct: 815 QKGHRPHPNECSGGDLDGDLFFISWDKDLIPAQTENPMDYTGRRPRIMDHKVTLEEIHQF 874
Query: 1077 FADYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALK 1256
F DYMI+DTLG ISTAHL+HADRE DKA S KCLELA LHSMAVDFAKTGAPAEMPR+LK
Sbjct: 875 FVDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLK 934
Query: 1257 PREFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGY 1436
PREFPDFMER+EKPMY+S G LGKLYRAT+ Q++ + +S+ +AYD L VDG+
Sbjct: 935 PREFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGF 994
Query: 1437 DSFLKTA 1457
+ FL+TA
Sbjct: 995 EVFLETA 1001
Score = 160 bits (405), Expect = 1e-36
Identities = 80/113 (70%), Positives = 90/113 (79%)
Frame = +3
Query: 1035 IMDHDVTLEEIQKFFADYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDF 1214
I+ H + +I KFF DYMI DTLG ISTAHL+HAD E +KA S KCLELA LHSMAVDF
Sbjct: 1110 ILLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDF 1169
Query: 1215 AKTGAPAEMPRALKPREFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTN 1373
AKTGA AEMPR LKP+EFPDFMER+EKPMYVS G LGKLYRA V+ Q+ +N
Sbjct: 1170 AKTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRALVESTMQLTSN 1222
>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
max]
Length = 941
Score = 644 bits (1661), Expect = 0.0
Identities = 318/487 (65%), Positives = 388/487 (79%), Gaps = 2/487 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+QT EV +D++ IPD+E++SDGV YCFSDGIGKIS +FA+ + +KL L H P
Sbjct: 334 GQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTP 393
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGG+KGVI VDR+SFRKL+LRSSMLKF+S N ML +TKWSES PC+LNREII+L
Sbjct: 394 SAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISL 453
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D V LAMQ +QL LGR+LT ++AA+ VLES G + K +L++ML + +P +
Sbjct: 454 LSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNS 513
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L+++ QL+DL+SR RIFVPKGRVLVGCLDETG+L YGQV+VR+T+ K +
Sbjct: 514 EPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREK 573
Query: 723 CGGNQRFFRRVD--ENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFP 896
G R+VD +NT NPCLHPGD+RVL+A++ +L+E L DCLVFP
Sbjct: 574 FGDEN--LRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFP 631
Query: 897 QKGDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKF 1076
QKG RPHPNECSGGDLDGDL+FISWD +LIP +T PMDYTGRRPRIMDH VTLEEIQ+F
Sbjct: 632 QKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQF 691
Query: 1077 FADYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALK 1256
F DYMI+DTLG ISTAHL+HADRE DKA S KCLELA LHSMAVDFAKTGAPA MPR LK
Sbjct: 692 FVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLK 751
Query: 1257 PREFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGY 1436
PREFPDFMER +KPMY+S G LGKLYRA ++ Q++ + S+ +AYD L V+G+
Sbjct: 752 PREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGF 811
Query: 1437 DSFLKTA 1457
++FL+TA
Sbjct: 812 EAFLETA 818
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 644 bits (1661), Expect = 0.0
Identities = 318/487 (65%), Positives = 388/487 (79%), Gaps = 2/487 (0%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+QT EV +D++ IPD+E++SDGV YCFSDGIGKIS +FA+ + +KL L H P
Sbjct: 514 GQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFARQVAQKLKLDHTP 573
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGG+KGVI VDR+SFRKL+LRSSMLKF+S N ML +TKWSES PC+LNREII+L
Sbjct: 574 SAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISL 633
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLGV+D V LAMQ +QL LGR+LT ++AA+ VLES G + K +L++ML + +P +
Sbjct: 634 LSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNS 693
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L+++ QL+DL+SR RIFVPKGRVLVGCLDETG+L YGQV+VR+T+ K +
Sbjct: 694 EPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREK 753
Query: 723 CGGNQRFFRRVD--ENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFP 896
G R+VD +NT NPCLHPGD+RVL+A++ +L+E L DCLVFP
Sbjct: 754 FGDEN--LRKVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFP 811
Query: 897 QKGDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKF 1076
QKG RPHPNECSGGDLDGDL+FISWD +LIP +T PMDYTGRRPRIMDH VTLEEIQ+F
Sbjct: 812 QKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQF 871
Query: 1077 FADYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALK 1256
F DYMI+DTLG ISTAHL+HADRE DKA S KCLELA LHSMAVDFAKTGAPA MPR LK
Sbjct: 872 FVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLK 931
Query: 1257 PREFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGY 1436
PREFPDFMER +KPMY+S G LGKLYRA ++ Q++ + S+ +AYD L V+G+
Sbjct: 932 PREFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGF 991
Query: 1437 DSFLKTA 1457
++FL+TA
Sbjct: 992 EAFLETA 998
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 643 bits (1658), Expect = 0.0
Identities = 308/486 (63%), Positives = 378/486 (77%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFS+S QTL V +D++ IPDIE+ +DG YCFSDGIGKIS AFAK + +K GL H+P
Sbjct: 520 GQLFSASRQTLNVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVP 579
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGVI VDR SFRK++LR SMLKFDS+N MLN+T+W+ES PC+LNREII L
Sbjct: 580 SAFQIRYGGYKGVIAVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICL 639
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLG+ED+VF AMQ L LG +L +AA+NVL+ G K +L++MLLQGY P +
Sbjct: 640 LSTLGIEDAVFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSS 699
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L+ H E+QL++L+SR RI VPKGR+L+GC+DE GILEYGQV+VRVT+ KAE++
Sbjct: 700 EPYLSMMLRVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFVRVTLTKAELK 759
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
Q +F ++DE TS NPCLHPGD+RVL+A+++V +E +DC++FPQK
Sbjct: 760 -SREQSYFHKIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQK 818
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +F+SWD+ LIP + PMDY G RPRIMDHDVTLEEI KFF
Sbjct: 819 GERPHPNECSGGDLDGDQFFVSWDEKLIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFV 878
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMISDTLG ISTAHL+HADR+P+KA S KCLELANLHS AVDFAKTGAPAEMP ALKPR
Sbjct: 879 DYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPR 938
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDF+ER+EKP Y+S GKLYRA + Q K A+ + YD L G++S
Sbjct: 939 EFPDFLERFEKPTYISESVFGKLYRAVRSSLAQRKPEAESDGTL---TYDATLEEAGFES 995
Query: 1443 FLKTAE 1460
F++TA+
Sbjct: 996 FIETAK 1001
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 642 bits (1657), Expect = 0.0
Identities = 314/486 (64%), Positives = 384/486 (79%)
Frame = +3
Query: 3 GQLFSSSIQTLEVHPRDIDHIPDIEIVSDGVKYCFSDGIGKISYAFAKDIVRKLGLPHIP 182
GQLFSSS+ TL V +D+ IPDIE+ SDG+ YCFSDGIGKIS FA+++ +K GL P
Sbjct: 519 GQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAREVAQKCGLNDTP 578
Query: 183 SAFQIRYGGYKGVIVVDRQSFRKLALRSSMLKFDSSNCMLNITKWSESQPCYLNREIITL 362
SAFQIRYGGYKGV+ VDR SFRK++LR SM KF+S MLN+TKWSES PC+LNREI+TL
Sbjct: 579 SAFQIRYGGYKGVVAVDRNSFRKMSLRGSMHKFESKIRMLNVTKWSESMPCFLNREIVTL 638
Query: 363 LSTLGVEDSVFLAMQDEQLQTLGRILTKTEAAVNVLESTGGGEMKRVLIRMLLQGYDPKN 542
LSTLG++D F +Q EQL LG++LT EAA++VL+S G + + +L++MLLQGY+P
Sbjct: 639 LSTLGIKDEAFETLQQEQLHLLGQMLTNREAALDVLQSLCGADSQNILVKMLLQGYEPNV 698
Query: 543 EPYLSRVLQSHLENQLADLRSRGRIFVPKGRVLVGCLDETGILEYGQVYVRVTMNKAEVQ 722
EPYLS +L ++ + L+DL+ R RI+VPKG+VLVGCLDET L YGQVYVR+++ KAE++
Sbjct: 699 EPYLSMMLLANHVSLLSDLKCRCRIYVPKGQVLVGCLDETATLNYGQVYVRLSIKKAELE 758
Query: 723 CGGNQRFFRRVDENTSXXXXXXXXXXNPCLHPGDVRVLEAVWDVKLQESNLVDCLVFPQK 902
+Q FF +VDE T+ NPCLHPGDVRVLEAV++ +L++ LVDCLVFPQK
Sbjct: 759 -HADQNFFHKVDEKTAIVIGKVVVTKNPCLHPGDVRVLEAVYEAELEDKGLVDCLVFPQK 817
Query: 903 GDRPHPNECSGGDLDGDLYFISWDDNLIPPRTVTPMDYTGRRPRIMDHDVTLEEIQKFFA 1082
G+RPHPNECSGGDLDGD +FISWD +LIP +T PMDYTG RPRIMDH+VTLEEIQKFF
Sbjct: 818 GERPHPNECSGGDLDGDQFFISWDKDLIPCQTDAPMDYTGSRPRIMDHEVTLEEIQKFFV 877
Query: 1083 DYMISDTLGTISTAHLIHADREPDKALSSKCLELANLHSMAVDFAKTGAPAEMPRALKPR 1262
DYMI+DTLG ISTAHL+HADREPDKA S KCLELA LHSMAVDFAKTGAPAEMPR+LKPR
Sbjct: 878 DYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVDFAKTGAPAEMPRSLKPR 937
Query: 1263 EFPDFMERWEKPMYVSHGALGKLYRATVQFIHQMKTNADLSDAIPSDAYDPDLIVDGYDS 1442
EFPDFM+R +KPMY S G LGKLYRAT+ Q ++ S + YD DL V+G+++
Sbjct: 938 EFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKKMAEALYDHDLEVNGFEA 997
Query: 1443 FLKTAE 1460
FL TA+
Sbjct: 998 FLSTAQ 1003