BLASTX nr result
ID: Rehmannia25_contig00018010
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00018010
(377 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006343621.1| PREDICTED: pentatricopeptide repeat-containi... 53 7e-09
ref|XP_004242990.1| PREDICTED: pentatricopeptide repeat-containi... 50 4e-08
gb|EMJ05798.1| hypothetical protein PRUPE_ppa002987mg [Prunus pe... 54 9e-08
ref|NP_194799.1| pentatricopeptide repeat-containing protein [Ar... 50 2e-07
ref|XP_004507756.1| PREDICTED: pentatricopeptide repeat-containi... 45 2e-07
ref|XP_002867333.1| pentatricopeptide repeat-containing protein ... 50 3e-07
ref|XP_006285932.1| hypothetical protein CARUB_v10007444mg [Caps... 48 6e-07
ref|XP_004288724.1| PREDICTED: pentatricopeptide repeat-containi... 46 9e-07
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 49 2e-06
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi... 49 2e-06
gb|EXB42930.1| hypothetical protein L484_013952 [Morus notabilis] 47 2e-06
ref|XP_003610281.1| Pentatricopeptide repeat-containing protein ... 44 6e-06
>ref|XP_006343621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like isoform X1 [Solanum tuberosum]
gi|565353404|ref|XP_006343622.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g30700-like isoform X2 [Solanum tuberosum]
Length = 791
Score = 53.1 bits (126), Expect(3) = 7e-09
Identities = 42/93 (45%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Frame = +2
Query: 71 NDSNRSSKGFYIE-----HKVIRCTMAGLIPFST---HLVICILL----VKSTVVM*CLV 214
N+ N SS + E KV T+ GLIP S HL + + VKS +V V
Sbjct: 296 NNENESSVRLFRELLVHGEKVNSSTIVGLIPVSCPFGHLTLTCSIHGFCVKSGMVSNPSV 355
Query: 215 LLSTALTTVYWWLHEIQLSRKLFDESPNKTLAS 313
STALTTVY L+E++L+R+LFDESP K+LAS
Sbjct: 356 --STALTTVYSRLNEMELARRLFDESPKKSLAS 386
Score = 28.9 bits (63), Expect(3) = 7e-09
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G++S+YS CG G+I + DL++ NAMI
Sbjct: 257 GLISMYSKCGDVSTAKLLFGMIREPDLISCNAMI 290
Score = 22.7 bits (47), Expect(3) = 7e-09
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 330 QKGQTGMAKSLFNEMQ 377
Q G T MA SLF EMQ
Sbjct: 396 QNGLTEMAISLFREMQ 411
>ref|XP_004242990.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Solanum lycopersicum]
Length = 791
Score = 49.7 bits (117), Expect(3) = 4e-08
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 12/93 (12%)
Frame = +2
Query: 71 NDSNRSSKGFYIE-----HKVIRCTMAGLIPFST---HLVICILL----VKSTVVM*CLV 214
ND N SS + E KV T+ GLIP S HL + + VK+ +V+
Sbjct: 296 NDENESSVRLFRELLVHGEKVNSSTIVGLIPVSCPFGHLNLTCSIHGFCVKTGMVL--NP 353
Query: 215 LLSTALTTVYWWLHEIQLSRKLFDESPNKTLAS 313
STALTTVY L+E++L+R+LFDES K+LAS
Sbjct: 354 SASTALTTVYSRLNEMELARRLFDESTKKSLAS 386
Score = 29.6 bits (65), Expect(3) = 4e-08
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G++SLYS CG G+I + DL++ NAMI
Sbjct: 257 GLISLYSKCGDVLTAKLLFGMIKEPDLISCNAMI 290
Score = 22.7 bits (47), Expect(3) = 4e-08
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 330 QKGQTGMAKSLFNEMQ 377
Q G T MA SLF EMQ
Sbjct: 396 QNGLTEMAISLFREMQ 411
>gb|EMJ05798.1| hypothetical protein PRUPE_ppa002987mg [Prunus persica]
Length = 614
Score = 53.5 bits (127), Expect(2) = 9e-08
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Frame = +2
Query: 68 CNDSNRSSKGFYIE-----HKVIRCTMAGLIPFST---HLVICILL----VKSTVVM*CL 211
CN+ SS + E KV T+ GLIP S+ HL + L VKS +V
Sbjct: 119 CNNETVSSVSLFRELLASGEKVNSSTIVGLIPVSSPFGHLQLTGSLQTFCVKSGIVSHPS 178
Query: 212 VLLSTALTTVYWWLHEIQLSRKLFDESPNKTLAS 313
V STA TVY L+EI+L+R+LFDESP KTLAS
Sbjct: 179 V--STAFVTVYCRLNEIELARQLFDESPEKTLAS 210
Score = 28.1 bits (61), Expect(2) = 9e-08
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G+VSLYS C G I + DL+ YNAMI
Sbjct: 81 GLVSLYSKCKELETARLLFGHITQPDLICYNAMI 114
>ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis
thaliana] gi|7269971|emb|CAB79788.1| putative protein
[Arabidopsis thaliana] gi|332660398|gb|AEE85798.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 792
Score = 49.7 bits (117), Expect(2) = 2e-07
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +2
Query: 128 TMAGLIPFSTHLVICILL----VKSTVVM*CLVLLSTALTTVYWWLHEIQLSRKLFDESP 295
T+ L+P S HL++ + +KS + V STALTTVY L+EI+ +RKLFDESP
Sbjct: 324 TLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASV--STALTTVYSKLNEIESARKLFDESP 381
Query: 296 NKTLAS 313
K+L S
Sbjct: 382 EKSLPS 387
Score = 31.2 bits (69), Expect(2) = 2e-07
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCGGLIM---------KLDLVAYNAMI 77
G +SLYS CG + M K D+VAYNAMI
Sbjct: 261 GFISLYSKCGKIKMGSALFREFRKPDIVAYNAMI 294
>ref|XP_004507756.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cicer arietinum]
Length = 783
Score = 45.4 bits (106), Expect(2) = 2e-07
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Frame = +2
Query: 113 KVIRCTMAGLIPFST---HLVICILL----VKSTVVM*CLVLLSTALTTVYWWLHEIQLS 271
KV T+ GLIP + HL + L+ +KS +++ V STA T +Y L+EI ++
Sbjct: 307 KVSSSTIVGLIPLPSPFGHLHLACLIHGFCLKSGIILNPTV--STAFTAIYNKLNEIDMA 364
Query: 272 RKLFDESPNKTLAS 313
R+LFDESP KT+ +
Sbjct: 365 RQLFDESPEKTVVA 378
Score = 35.0 bits (79), Expect(2) = 2e-07
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G++SLYS CG G+I K DL+AYNAMI
Sbjct: 249 GLISLYSKCGDTKTARLLFGMIGKPDLIAYNAMI 282
>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297313169|gb|EFH43592.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 792
Score = 49.7 bits (117), Expect(2) = 3e-07
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = +2
Query: 113 KVIRCTMAGLIPFSTHLVICILL----VKSTVVM*CLVLLSTALTTVYWWLHEIQLSRKL 280
K+ T+ L+P S HL++ + +KS + V STALTTVY L+EI+ +RKL
Sbjct: 319 KLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSV--STALTTVYSKLNEIESARKL 376
Query: 281 FDESPNKTLAS 313
FDESP K+L S
Sbjct: 377 FDESPEKSLPS 387
Score = 30.0 bits (66), Expect(2) = 3e-07
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCGGLIM---------KLDLVAYNAMI 77
G +SLYS CG + M + D+VAYNAMI
Sbjct: 261 GFISLYSKCGKIKMASTLFREFRRPDIVAYNAMI 294
>ref|XP_006285932.1| hypothetical protein CARUB_v10007444mg [Capsella rubella]
gi|482554637|gb|EOA18830.1| hypothetical protein
CARUB_v10007444mg [Capsella rubella]
Length = 790
Score = 48.1 bits (113), Expect(2) = 6e-07
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Frame = +2
Query: 128 TMAGLIPFSTHLVICILL----VKSTVVM*CLVLLSTALTTVYWWLHEIQLSRKLFDESP 295
T+ LIP S HL++ + +KS + V ST+LTTVY L+EI+ +RKLFDESP
Sbjct: 322 TLMSLIPVSGHLMLIYAIHGYSLKSNFLSHTSV--STSLTTVYSKLNEIESARKLFDESP 379
Query: 296 NKTLAS 313
K+L S
Sbjct: 380 EKSLPS 385
Score = 30.8 bits (68), Expect(2) = 6e-07
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCGGLIM---------KLDLVAYNAMI 77
G +SLYS CG + M K D+VAYNAMI
Sbjct: 259 GFISLYSKCGKIKMATTLFREFHKPDVVAYNAMI 292
>ref|XP_004288724.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Fragaria vesca subsp. vesca]
Length = 790
Score = 45.8 bits (107), Expect(2) = 9e-07
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Frame = +2
Query: 68 CNDSNRSSKGFYIE-----HKVIRCTMAGLIPFST---HLVI--CI--LLVKSTVVM*CL 211
CN+ + G + E KV T+ GL+P S HL + C+ VKS +V
Sbjct: 295 CNNETVLAVGLFKELLGYGKKVNSSTIVGLVPVSCPFGHLQLSGCLQSFCVKSGIVSHPS 354
Query: 212 VLLSTALTTVYWWLHEIQLSRKLFDESPNKTLAS 313
V STAL TVY L+EI +R+LFDES +TLAS
Sbjct: 355 V--STALVTVYCRLNEIDSARQLFDESAKRTLAS 386
Score = 32.3 bits (72), Expect(2) = 9e-07
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G+VSLYS CG G+I + DL+ YNAMI
Sbjct: 257 GLVSLYSKCGELETARRVFGMIGEPDLICYNAMI 290
>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 48.9 bits (115), Expect(2) = 2e-06
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 KVIRCTMAGLIPFS---THLVICILLVKSTVVM*CLVL--LSTALTTVYWWLHEIQLSRK 277
+V T+ GLIP HL + L+ ++ + ++ +STALTTVY L+E+Q +R+
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371
Query: 278 LFDESPNKTLAS 313
LFDESP K+LAS
Sbjct: 372 LFDESPEKSLAS 383
Score = 28.5 bits (62), Expect(2) = 2e-06
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG----GLIM-----KLDLVAYNAMI 77
G++SLYS CG G I+ + DL++YNAMI
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMI 287
>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 48.9 bits (115), Expect(2) = 2e-06
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 KVIRCTMAGLIPFS---THLVICILLVKSTVVM*CLVL--LSTALTTVYWWLHEIQLSRK 277
+V T+ GLIP HL + L+ ++ + ++ +STALTTVY L+E+Q +R+
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371
Query: 278 LFDESPNKTLAS 313
LFDESP K+LAS
Sbjct: 372 LFDESPEKSLAS 383
Score = 28.5 bits (62), Expect(2) = 2e-06
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG----GLIM-----KLDLVAYNAMI 77
G++SLYS CG G I+ + DL++YNAMI
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMI 287
>gb|EXB42930.1| hypothetical protein L484_013952 [Morus notabilis]
Length = 781
Score = 47.4 bits (111), Expect(2) = 2e-06
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 12/94 (12%)
Frame = +2
Query: 68 CNDSNRSSKGFYIE-----HKVIRCTMAGLIPFST---HLVICILLVKSTVVM*CLVL-- 217
CN+ +S + E KV T+ GLIP S+ HL + + + + C +L
Sbjct: 286 CNNDTEASLRLFKELLASGKKVNSSTIVGLIPVSSPFGHLQLASSI--QSFCLKCGILSD 343
Query: 218 --LSTALTTVYWWLHEIQLSRKLFDESPNKTLAS 313
+STALTTVY L+E + +R++FDESP ++LAS
Sbjct: 344 PSVSTALTTVYCRLNETESARQVFDESPERSLAS 377
Score = 29.6 bits (65), Expect(2) = 2e-06
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCG---------GLIMKLDLVAYNAMI 77
G+VSLYS CG G + DL+ YNAMI
Sbjct: 248 GLVSLYSKCGETDKARFLFGQLSYPDLICYNAMI 281
>ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 783
Score = 44.3 bits (103), Expect(2) = 6e-06
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +2
Query: 113 KVIRCTMAGLIPFST-----HLVICI--LLVKSTVVM*CLVLLSTALTTVYWWLHEIQLS 271
+V T+ GLIP + HL I VKS +++ V STA T +Y L+EI L+
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV--STAFTAIYNKLNEIDLA 364
Query: 272 RKLFDESPNKTLAS 313
R LFDESP KT+ +
Sbjct: 365 RHLFDESPEKTVVA 378
Score = 31.2 bits (69), Expect(2) = 6e-06
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 9/34 (26%)
Frame = +3
Query: 3 GMVSLYSNCGGL---------IMKLDLVAYNAMI 77
G++SLYS CG + I + DL+AYNAMI
Sbjct: 249 GLISLYSKCGDVNTARLLFRRINRPDLIAYNAMI 282