BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00015591
         (722 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              201   2e-49
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   200   4e-49
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   182   7e-44
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   180   4e-43
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   176   5e-42
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   175   1e-41
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   174   3e-41
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   172   8e-41
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   171   3e-40
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   169   1e-39
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   167   2e-39
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   167   2e-39
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   167   2e-39
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   160   3e-37
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           160   3e-37
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   2e-33
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   146   8e-33
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     143   6e-32
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,...   141   2e-31
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   141   2e-31

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  201 bits (512), Expect = 2e-49
 Identities = 125/255 (49%), Positives = 171/255 (67%), Gaps = 15/255 (5%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQL 545
           SVL+LH+QV PAV S+ TT + R  PTSVL+Q+QR+E RP    LK + T+Q TL+KRQ+
Sbjct: 26  SVLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQM 84

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSV------- 386
            +   +S+ E N + D ++Y+ +F+ QLL +P LWY   S Q  E+S  S+S+       
Sbjct: 85  EIV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTD 141

Query: 385 --NLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VR 227
             N M V+   V+ALA++A SA K+A S+ ++A+L GA L+D PS   G  S P      
Sbjct: 142 IENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEE 201

Query: 226 RIVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQ 47
           + VRSTRLLER++K+R   PK+ + E +  R+ E  RK NEG+DP DPLR+FLWGPET +
Sbjct: 202 KTVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 260

Query: 46  LLTAKEESELIVKIQ 2
           LLTAKEESELIV+IQ
Sbjct: 261 LLTAKEESELIVQIQ 275


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  200 bits (508), Expect = 4e-49
 Identities = 124/254 (48%), Positives = 170/254 (66%), Gaps = 15/254 (5%)
 Frame = -2

Query: 718 VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQLL 542
           VL+LH+QV PAV S+ TT + R  PTSVL+Q+QR+E RP    LK + T+Q TL+KRQ+ 
Sbjct: 38  VLMLHDQVAPAVASIPTT-IARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQME 96

Query: 541 MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSV-------- 386
           +   +S+ E N + D ++Y+ +F+ QLL +P LWY   S Q  E+S  S+S+        
Sbjct: 97  IV--VSADEENSD-DHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDI 153

Query: 385 -NLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDD-PSSIRGLASVP----VRR 224
            N M V+   V+ALA++A SA K+A S+ ++A+L GA L+D PS   G  S P      +
Sbjct: 154 ENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEK 213

Query: 223 IVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQL 44
            VRSTRLLER++K+R   PK+ + E +  R+ E  RK NEG+DP DPLR+FLWGPET +L
Sbjct: 214 TVRSTRLLERRSKKR-RNPKVAVHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKL 272

Query: 43  LTAKEESELIVKIQ 2
           LTAKEESELIV+IQ
Sbjct: 273 LTAKEESELIVQIQ 286


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  182 bits (463), Expect = 7e-44
 Identities = 116/259 (44%), Positives = 161/259 (62%), Gaps = 19/259 (7%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL---KADSTYQQTLDKR 551
           SVL+ HEQ  PA TS+  TS+ R  PTSVL+Q+QR++ RPL  L   K D  Y    DK+
Sbjct: 31  SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90

Query: 550 QLLMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSS 395
           Q+     L+    + N         F+ +LL+ P+L  L + L+ EE        QS ++
Sbjct: 91  QIENGASLNEENASNNFGQ----LGFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAA 146

Query: 394 TSVNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDP-SSIRGLAS---VPVR 227
            +  ++ VE  ++VALA++A SA K+AAS+++D +L    LDD  S+  G A+   +PV 
Sbjct: 147 DTKEIVDVEPSNIVALAKKALSASKQAASLSEDLKL---DLDDSLSNSLGSANSCTLPVE 203

Query: 226 R----IVRSTRLLERQTKRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGP 59
           +     VRSTR LERQ+KRR  +PK+ I+ET   R+ +  RK +EGFDPNDPLR+FLWGP
Sbjct: 204 KEEVVTVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGP 263

Query: 58  ETTQLLTAKEESELIVKIQ 2
           ET QLLTAKEESEL  ++Q
Sbjct: 264 ETKQLLTAKEESELSNQVQ 282


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  180 bits (457), Expect = 4e-43
 Identities = 117/252 (46%), Positives = 153/252 (60%), Gaps = 12/252 (4%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+ +EQ  PAV S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R  
Sbjct: 35  SVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 93

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 389
            M       E   + D D+ V D + Q L  P+LW L   +++ E        QS S+ +
Sbjct: 94  -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 152

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 215
              +  E    VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VR
Sbjct: 153 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 211

Query: 214 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 38
           STR LER++K+R V KPK+   ET + RK    +K +EGFDPNDPLR+FLWGPET +LLT
Sbjct: 212 STRFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLT 271

Query: 37  AKEESELIVKIQ 2
           A EE ELI +IQ
Sbjct: 272 ADEEFELIAQIQ 283


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  176 bits (447), Expect = 5e-42
 Identities = 118/258 (45%), Positives = 164/258 (63%), Gaps = 18/258 (6%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 545
           SVL+LHEQ  PAVTS+  TS+ R  PTSVL+Q+QR+E +PLL  LK D T +  LD+ Q+
Sbjct: 32  SVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQI 91

Query: 544 LMAPGLSSREGNKNVDPDEY---VNDFQLQLLRRPELWYLWASLQKEE--------QSFS 398
               G S  E   ++D D++   VN  + QLL   ++  +++SLQ           +S +
Sbjct: 92  --ETGASVHE---DLDIDDFYPLVNSSKPQLLNH-DILDVFSSLQTGAKPSTPLTLESLT 145

Query: 397 STSVNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRR 224
           + S   M VE  +VVALA++A SA +EAAS+A+D++  GA  DD      LA+  V   +
Sbjct: 146 TASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDD-LGYTSLANWIVEEEK 204

Query: 223 IVRSTRLLERQTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPE 56
            VRSTR+LER+ KR    +VPK K+   E+N     +  +K +EGF+PNDPLR+FLWGPE
Sbjct: 205 TVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPE 264

Query: 55  TTQLLTAKEESELIVKIQ 2
           T QLLTAKEE+ELI ++Q
Sbjct: 265 TRQLLTAKEEAELIARVQ 282


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  175 bits (444), Expect = 1e-41
 Identities = 115/252 (45%), Positives = 152/252 (60%), Gaps = 12/252 (4%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+ +EQ  PAV S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R  
Sbjct: 35  SVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 93

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 389
            M       E   + D D+ V D + Q L  P+LW L   +++ E        QS S+ +
Sbjct: 94  -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 152

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 215
              +  E    VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VR
Sbjct: 153 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 211

Query: 214 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 38
           ST+ LER++K+R V KPK+   ET + RK    +K +EGFD NDPLR+FLWGPET +LLT
Sbjct: 212 STQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271

Query: 37  AKEESELIVKIQ 2
           A EE ELI +IQ
Sbjct: 272 ADEEFELIAQIQ 283


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  174 bits (441), Expect = 3e-41
 Identities = 114/252 (45%), Positives = 152/252 (60%), Gaps = 12/252 (4%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           +VL+ +EQ  PAV S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R  
Sbjct: 36  AVLMHNEQSAPAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN- 94

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 389
            M       E   + D D+ V D + Q L  P+LW L   +++ E        QS S+ +
Sbjct: 95  -METEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDT 153

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VR 215
              +  E    VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VR
Sbjct: 154 EESVDAEPFDAVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVR 212

Query: 214 STRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLT 38
           ST+ LER++K+R V KPK+   ET + RK    +K +EGFD NDPLR+FLWGPET +LLT
Sbjct: 213 STQFLERRSKKRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 272

Query: 37  AKEESELIVKIQ 2
           A EE ELI +IQ
Sbjct: 273 ADEEFELIAQIQ 284


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  172 bits (437), Expect = 8e-41
 Identities = 112/242 (46%), Positives = 146/242 (60%), Gaps = 12/242 (4%)
 Frame = -2

Query: 691 PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSRE 515
           PAV S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R   M       E
Sbjct: 37  PAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVE 94

Query: 514 GNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADH 359
              + D D+ V D + Q L  P+LW L   +++ E        QS S+ +   +  E   
Sbjct: 95  EKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFD 154

Query: 358 VVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTK 185
            VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VRSTR LER++K
Sbjct: 155 AVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSK 213

Query: 184 RR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVK 8
           +R V KPK+   ET + RK    +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +
Sbjct: 214 KRKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQ 273

Query: 7   IQ 2
           IQ
Sbjct: 274 IQ 275


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 548

 Score =  171 bits (432), Expect = 3e-40
 Identities = 117/248 (47%), Positives = 148/248 (59%), Gaps = 9/248 (3%)
 Frame = -2

Query: 718 VLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLL 542
           V +LHEQ  PAVTS  TTS+ R  PTSVL+Q+QR+E RPLL + K D T+Q T+D +Q  
Sbjct: 35  VFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQ-- 92

Query: 541 MAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEAD 362
           M PG S +EG          +D   QL+    L     S     QS ++ +  LM VE  
Sbjct: 93  MDPGTSDQEG--------ICSDVLDQLILHSNL-----SWSLTMQSITTNTDELMVVEPT 139

Query: 361 HVVALAREAFSACKEAASIAKDARLFGAHLDD-------PSSIRGLASVPVRRIVRSTRL 203
           +V+ LAR+A SA KEAA +A+      A+LDD       P+ +   +   V+  VRSTR 
Sbjct: 140 NVIDLARKALSASKEAALLAQKC----ANLDDTVSTGLEPTDLSNFSLEEVKT-VRSTRR 194

Query: 202 LERQTK-RRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEE 26
           LERQ+K RRV K K    E    R+    +K NEGFDP DPLR+FLWGPET QLLTAKEE
Sbjct: 195 LERQSKNRRVTKTKEIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEE 254

Query: 25  SELIVKIQ 2
           SELI ++Q
Sbjct: 255 SELIGQVQ 262


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  169 bits (427), Expect = 1e-39
 Identities = 110/241 (45%), Positives = 145/241 (60%), Gaps = 12/241 (4%)
 Frame = -2

Query: 688 AVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREG 512
           +V S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R   M       E 
Sbjct: 35  SVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEE 92

Query: 511 NKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHV 356
             + D D+ V D + Q L  P+LW L   +++ E        QS S+ +   +  E    
Sbjct: 93  KNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDA 152

Query: 355 VALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKR 182
           VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VRSTR LER++K+
Sbjct: 153 VALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSKK 211

Query: 181 R-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKI 5
           R V KPK+   ET + RK    +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +I
Sbjct: 212 RKVSKPKVTNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQI 271

Query: 4   Q 2
           Q
Sbjct: 272 Q 272


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  167 bits (424), Expect = 2e-39
 Identities = 110/242 (45%), Positives = 145/242 (59%), Gaps = 12/242 (4%)
 Frame = -2

Query: 691 PAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSRE 515
           PAV S+ T+S+ R  PTSVL+Q+QR+E RPLL + K D T Q T D R   M       E
Sbjct: 37  PAVASVPTSSVARHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVE 94

Query: 514 GNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADH 359
              + D D+ V D + Q L  P+LW L   +++ E        QS S+ +   +  E   
Sbjct: 95  EKNSGDLDQLVQDLEHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFD 154

Query: 358 VVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTK 185
            VALAR+A SA KEAAS+A++ +L GA   D S    L   P+  +  VRST+ LER++K
Sbjct: 155 AVALARKALSASKEAASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTQFLERRSK 213

Query: 184 RR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVK 8
           +R V KPK+   ET + RK    +K +EGFD NDPLR+FLWGPET +LLTA EE ELI +
Sbjct: 214 KRKVSKPKVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQ 273

Query: 7   IQ 2
           IQ
Sbjct: 274 IQ 275


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum tuberosum]
          Length = 562

 Score =  167 bits (424), Expect = 2e-39
 Identities = 113/256 (44%), Positives = 149/256 (58%), Gaps = 16/256 (6%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+LHE   P ++S+    LGR  P S +  +Q+ E+R  L L K + T   T+D+R  
Sbjct: 27  SVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQQFENRLQLHLVKEEKTSLATIDRR-- 84

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTS 389
           L+    S  E N  VD ++ +N  Q+QLLR P   Y +          L   ++   S  
Sbjct: 85  LVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------R 227
             LM  E   VVALAR+A  A +EAA +A+D++L    LDD +    L++  V      +
Sbjct: 145 DKLMNFEPHSVVALARKALLASREAALLAEDSKL----LDDSNFPNFLSTNLVDDKLKEQ 200

Query: 226 RIVRSTRLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETT 50
           R VRSTR  ERQ+++R  PKP  ++QETN   +P+  RK NE  D NDPLRMFLWGPET 
Sbjct: 201 RTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESIDLNDPLRMFLWGPETK 260

Query: 49  QLLTAKEESELIVKIQ 2
           QLLTAKEESELIVKIQ
Sbjct: 261 QLLTAKEESELIVKIQ 276


>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum lycopersicum]
          Length = 563

 Score =  167 bits (424), Expect = 2e-39
 Identities = 116/257 (45%), Positives = 150/257 (58%), Gaps = 17/257 (6%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+LHE   P ++S+  T LGR  P S +  +Q  E+R  L L K + T   T+D+R  
Sbjct: 27  SVLMLHEHAAPVLSSVPHTYLGRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRR-- 84

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTS 389
           L+    S  E N  VD ++ +N  Q+QLL  P   Y +          L   ++   S  
Sbjct: 85  LVEAASSELEENDAVDSEQNINALQVQLLHWPGPSYSFPPYYLKGKGPLSPNKEPLHSKG 144

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------R 227
             LM  E   VVALAR+A  A KEAA +A+D++L    LDD      L++  V      +
Sbjct: 145 DKLMNFEPHSVVALARKALLASKEAALLAEDSKL----LDDSHFPNFLSTHLVDDKLKEQ 200

Query: 226 RIVRSTRLLERQTKRR-VPKPKIEIQETNHRR-KPESHRKFNEGFDPNDPLRMFLWGPET 53
           R VRSTR +ERQ+++R  PKP  E+QETN+R  +P+  RK NE  D NDPLRMFLWGPET
Sbjct: 201 RTVRSTRFIERQSRKRGAPKPIQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPET 260

Query: 52  TQLLTAKEESELIVKIQ 2
            QLLTAKEESELIVKIQ
Sbjct: 261 KQLLTAKEESELIVKIQ 277


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
           gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
           FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  160 bits (406), Expect = 3e-37
 Identities = 107/243 (44%), Positives = 144/243 (59%), Gaps = 3/243 (1%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+L EQ TPAV+S+ TTS  +  PTSVL+Q+QR+E RPL  + K D   Q TLD+R+ 
Sbjct: 27  SVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKT 86

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEA 365
            +  G S  EG  + + D+ V +F+ QL   P  W L              +  L+ VE 
Sbjct: 87  EI--GTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL--------------TDKLIDVEP 130

Query: 364 DHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT 188
            +V+ LA+ A SA K AA +A +       LD+ +S    + S+   +IVRS R L RQ+
Sbjct: 131 TNVINLAKRALSASKHAAFLADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQS 186

Query: 187 -KRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIV 11
             RR PK K  I ET   +  +  ++ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI 
Sbjct: 187 LNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIA 246

Query: 10  KIQ 2
           +IQ
Sbjct: 247 QIQ 249


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  160 bits (406), Expect = 3e-37
 Identities = 107/243 (44%), Positives = 144/243 (59%), Gaps = 3/243 (1%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+L EQ TPAV+S+ TTS  +  PTSVL+Q+QR+E RPL  + K D   Q TLD+R+ 
Sbjct: 27  SVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKT 86

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEA 365
            +  G S  EG  + + D+ V +F+ QL   P  W L              +  L+ VE 
Sbjct: 87  EI--GTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL--------------TDKLIDVEP 130

Query: 364 DHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT 188
            +V+ LA+ A SA K AA +A +       LD+ +S    + S+   +IVRS R L RQ+
Sbjct: 131 TNVINLAKRALSASKHAAFLADN----NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQS 186

Query: 187 -KRRVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIV 11
             RR PK K  I ET   +  +  ++ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI 
Sbjct: 187 LNRRAPKTKDLIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIA 246

Query: 10  KIQ 2
           +IQ
Sbjct: 247 QIQ 249


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Glycine max]
          Length = 575

 Score =  148 bits (373), Expect = 2e-33
 Identities = 111/263 (42%), Positives = 151/263 (57%), Gaps = 23/263 (8%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+LHEQ +P V S S+    +  P SVL+ +QR+E RPLL + K D T Q  L  RQ+
Sbjct: 33  SVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM 92

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSST----SVNLM 377
                ++  E N   + D+ V DF+  L   P L YL  S Q  E + SST    SV+L 
Sbjct: 93  ---DTVTVHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLE 149

Query: 376 ----GVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------- 230
               GV+ + V +LA++A S  K+ +S+ +D +   A  DD S   GLAS  +       
Sbjct: 150 RRPNGVQFNGV-SLAKKALSTSKQESSVVEDLKSIKA--DDDSIPFGLASTSLADPSIGR 206

Query: 229 RRIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHRKF------NEGFDPNDPLRMF 71
            + VRSTRLLER++K R+VPK K+   ET   RK ++  K       NE  D +DPLR+F
Sbjct: 207 NKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLF 266

Query: 70  LWGPETTQLLTAKEESELIVKIQ 2
           LWGPET QLLT ++ES+LI +IQ
Sbjct: 267 LWGPETKQLLTLEQESQLISQIQ 289


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  146 bits (368), Expect = 8e-33
 Identities = 105/248 (42%), Positives = 149/248 (60%), Gaps = 8/248 (3%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+LHEQ  PAVTS+ T+ + R  PTSVL+Q+QR+E +PLL + K +   Q TLD+ Q+
Sbjct: 32  SVLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPLLHIFKEEKASQATLDRIQI 91

Query: 544 LMAPGLSSREGNKNVDPDEY--VNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNL-MG 374
                 ++ E + N+D D Y  V DF+ QL   P    +  +        S+T+ N+ M 
Sbjct: 92  EN----TTAEEDFNID-DFYKLVKDFR-QLHVTPS--QIGENSPTGSALESNTTANVHMD 143

Query: 373 VEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLER 194
           VE   V+ LA+ A SA  EAAS+A+ ++   A L++ +S+ GL        VRST+LLER
Sbjct: 144 VEPSDVLTLAKHALSASLEAASLAETSKSISAGLNESTSL-GLGWE--EETVRSTQLLER 200

Query: 193 QTKR----RVPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEE 26
           + KR     +   K+   E +     +  RK+ EG +PNDPLR+FLWGPET QLLT KEE
Sbjct: 201 RRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEE 260

Query: 25  SELIVKIQ 2
           +ELI ++Q
Sbjct: 261 TELIARVQ 268


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  143 bits (360), Expect = 6e-32
 Identities = 97/242 (40%), Positives = 142/242 (58%), Gaps = 10/242 (4%)
 Frame = -2

Query: 697 VTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSS 521
           V   +TS+  TS+ +P  TSVL+Q+QR+E +PLL + K D T Q  L++RQ     G   
Sbjct: 36  VATGITSMPATSIAQPFSTSVLLQEQRDEFKPLLRVNKEDKTSQGVLNRRQ--NDSGALV 93

Query: 520 REGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQ-KEEQSFSSTSVNLMG-------VEA 365
            E     D +++V +F+   +  P  W++  SL+ K + S S T    MG       VE 
Sbjct: 94  HEDTLE-DYNQFVWEFERPSVHWPGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEV 152

Query: 364 DHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLERQTK 185
              +ALA++A  A KEAAS+A++++L G   DD  S+  L      + VRSTRLLER++K
Sbjct: 153 SDAIALAKKALMASKEAASLAEESKLVGTDSDDMLSVSFLGKGD--KTVRSTRLLERRSK 210

Query: 184 RR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVK 8
           RR VP+  +   E    R  +  ++ +EG + +DPLR+FL GPET QLLT +EESELI +
Sbjct: 211 RRKVPESSVLFYENPRNRAADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQ 270

Query: 7   IQ 2
           +Q
Sbjct: 271 VQ 272


>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Cucumis sativus] gi|449482444|ref|XP_004156283.1|
           PREDICTED: RNA polymerase sigma factor sigF,
           chloroplastic-like [Cucumis sativus]
          Length = 562

 Score =  141 bits (356), Expect = 2e-31
 Identities = 101/250 (40%), Positives = 144/250 (57%), Gaps = 10/250 (4%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQL 545
           SV +  EQ +PA          R   TS L Q+Q +E RP    LK D + Q TL++R  
Sbjct: 42  SVYMFPEQASPA----------RYFSTSFLSQEQHHECRPQSQILKDDRSSQMTLERR-- 89

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEE--------QSFSSTS 389
           L+   +   EG+++ D D  + + + Q +  P L   W  +Q EE        +S+++  
Sbjct: 90  LIERSVPIDEGSRD-DHDHLIWELKHQAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAG 148

Query: 388 VNLMGVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRST 209
             L+  E ++V+ALA++A SA K+AA +  +  L G  LD  S    L+     R VRST
Sbjct: 149 EMLVKDEPENVIALAKKALSASKQAALLVDETELVGTSLDYSSLDDSLSKEG--RTVRST 206

Query: 208 RLLERQTKRR-VPKPKIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAK 32
           RL +R++K+R VPK    I E ++ R  +S RK +E FDPNDPLR+FLWGPET +LLTA+
Sbjct: 207 RLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQ 266

Query: 31  EESELIVKIQ 2
           EESELIV+IQ
Sbjct: 267 EESELIVQIQ 276


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
           max]
          Length = 574

 Score =  141 bits (355), Expect = 2e-31
 Identities = 109/263 (41%), Positives = 145/263 (55%), Gaps = 23/263 (8%)
 Frame = -2

Query: 721 SVLLLHEQVTPAVTSLSTTSLGRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQL 545
           SVL+L EQ +P V S S+    +  P SVL+Q+QR+E RPLL + K D T Q  L  RQ+
Sbjct: 32  SVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQAMLSTRQM 91

Query: 544 LMAPGLSSREGNKNVDPDEYVNDFQLQLLRRPELWYLWASLQKEEQSFSSTSVNLM---- 377
                +   E N   + D+ V DF+  L   P L  L AS Q  E S SST   +     
Sbjct: 92  ---DTVMVHEENNTENADQVVLDFRKHLHYWPHLQNLLASSQTGEISASSTLQQVSSDLD 148

Query: 376 ----GVEADHVVALAREAFSACKEAASIAKDARLFGAHLDDPSSIRGLASVPV------- 230
               GV+ + V +LA++A S  K+ +S+ +D +   A  DD S   GLAS  +       
Sbjct: 149 RHTNGVQCNRV-SLAKKALSTSKQGSSVVEDLKSIKA--DDDSIPFGLASTGLADPSIGR 205

Query: 229 RRIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESHRKF------NEGFDPNDPLRMF 71
            + VRSTRLLER++K R+VPK K+   ET   RK ++H K       NE  D NDPL  F
Sbjct: 206 NKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFF 265

Query: 70  LWGPETTQLLTAKEESELIVKIQ 2
           L GPET QLLT ++ES+LI +IQ
Sbjct: 266 LRGPETKQLLTLEQESQLISQIQ 288