BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00014863
         (835 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   178   7e-45
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        171   4e-41
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   164   2e-40
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   162   1e-39
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           166   3e-39
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   157   5e-39
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   157   5e-39
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     159   6e-39
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   164   8e-39
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   164   8e-39
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   164   8e-39
emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera]   157   1e-38
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   160   7e-38
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     160   7e-38
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...   162   7e-38
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]           156   7e-38
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   160   9e-38
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         159   1e-37
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   159   1e-36
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   155   1e-36

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  178 bits (452), Expect(2) = 7e-45
 Identities = 95/256 (37%), Positives = 142/256 (55%), Gaps = 2/256 (0%)
 Frame = -3

Query: 776  VINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGYPDG 597
            +INRSP   L+ K P++ W+GK  D+ +LK+FGC+A+VH K DKL+PR++KC+FLGYP G
Sbjct: 589  LINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKG 648

Query: 596  VKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNVPSISV 417
            VKGY+LW +++   K +ISRDV FNE      D+SK         TP K           
Sbjct: 649  VKGYKLWIETQGKGKCIISRDVTFNEQ-----DMSKQ--------TPAK----------- 684

Query: 416  NDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEN--DNLNDY 243
                       D    + +  ++E++  +   ++         ++ HE        L  Y
Sbjct: 685  -----------DVEGLDQLQFEVEHETLQPEKSKETSSKTAQEEIVHERQNEPTQGLESY 733

Query: 242  VLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSVNSVKWMSAMQDE 63
             L RDR +R ++ P ++    +T++  SV E I + EPKTY +A+NS  + +W+ A+Q+E
Sbjct: 734  NLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEE 793

Query: 62   MTSLYVNNTWELVPKP 15
            M SL  N TWELV KP
Sbjct: 794  MDSLRKNETWELVTKP 809



 Score = 29.6 bits (65), Expect(2) = 7e-45
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS+SGLSK FW EA  TA
Sbjct: 569 LSSSGLSKVFWAEAAETA 586


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  171 bits (434), Expect(2) = 4e-41
 Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 5/263 (1%)
 Frame = -3

Query: 779  FVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGYPD 600
            +++NRSP   +  K PE++W+GKP ++ NL++FGC A++H    KL+ R+LK VF+GYPD
Sbjct: 620  YLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPD 679

Query: 599  GVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNVPSIS 420
            GVKGY++W K +   K ++SRDVVF+E+  L  + +++ +  Q++   NK   S    ++
Sbjct: 680  GVKGYKIWCKDQG--KCIVSRDVVFHES-VLLKESAEHDAGLQDNPAANKRSGSETSKVN 736

Query: 419  VNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNLNDYV 240
            V       +   D  +  +  +D E   AE  ++E  E P  D            L +Y 
Sbjct: 737  V-------ELLTDKSSEKEAASDDERATAESEEHEVSELPQAD------------LQNYQ 777

Query: 239  LTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSVNSVKWMSAMQDEM 60
            L RDR RR +R P ++    L +Y     + +   EP  + +A+ SV+  KW+ AMQDEM
Sbjct: 778  LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837

Query: 59   TSLYVNNTWELVPKP-----INC 6
             SL  N TW L+P P     INC
Sbjct: 838  ESLQRNQTWTLIPNPGNKRLINC 860



 Score = 23.9 bits (50), Expect(2) = 4e-41
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTAA 779
           L  S L + FW EAV+TA+
Sbjct: 601 LINSKLPRSFWAEAVNTAS 619


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  164 bits (416), Expect(2) = 2e-40
 Identities = 100/269 (37%), Positives = 153/269 (56%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWSG P ++S+L++FGC+A+ H    KL+PR++KC+FL
Sbjct: 833  STACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFL 892

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 893  GYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNV----------PVESQEK 940

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P          E ++  +N +E    P+++   +    ++   
Sbjct: 941  ASVQV---EHLISSGHAP----------EKEDVAINQDE----PVIEDSNSSIVQQSPKR 983

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
            +   + +DR +RNI+ P ++  + ++ +Y  SV E IE N+EP TY +A+ S +  +W++
Sbjct: 984  S---IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWIT 1040

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWELV      KPI C
Sbjct: 1041 AMHDEMESLEKNHTWELVKLPKEKKPIRC 1069



 Score = 28.5 bits (62), Expect(2) = 2e-40
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS +GL K+FW EAV TA
Sbjct: 818 LSNAGLPKQFWAEAVSTA 835


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  162 bits (409), Expect(2) = 1e-39
 Identities = 102/273 (37%), Positives = 147/273 (53%), Gaps = 11/273 (4%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWSG P ++S+L++FGC A+ H    KL+PR++KC+FL
Sbjct: 587  STACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFL 646

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 647  GYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNV----------PVESQEK 694

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDN----EHDEFPLVDTKLNHEHAE 264
             S+ V     +I + H P          E +N  +N +    E  +  +V     H    
Sbjct: 695  ASVQV---EHLISSGHAP----------EKENVAINLDAPVIEDSDSSIVQQSPKHS--- 738

Query: 263  NDNLNDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSV 90
                    + +D+ +RNI+ P ++  + ++ +Y  SV E IE N EP TY DA+ S +  
Sbjct: 739  --------IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCN 790

Query: 89   KWMSAMQDEMTSLYVNNTWELV-----PKPINC 6
            +W++AM DEM SL  N+TWELV      KPI C
Sbjct: 791  RWITAMHDEMESLEKNHTWELVKLPKEKKPIRC 823



 Score = 28.5 bits (62), Expect(2) = 1e-39
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS +GL K+FW EAV TA
Sbjct: 572 LSNAGLPKQFWAEAVSTA 589


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  166 bits (419), Expect(2) = 3e-39
 Identities = 103/264 (39%), Positives = 153/264 (57%), Gaps = 3/264 (1%)
 Frame = -3

Query: 797  SCSYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCV 618
            + S +C++INRSP +PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR++KC+
Sbjct: 618  AASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCL 677

Query: 617  FLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDV-SKNVSETQNSTTPNKVEL 441
            FLGY  GVKGY+LW+  E G K  +SR VVFNE+      + S++V E +      +VE 
Sbjct: 678  FLGYGSGVKGYKLWN-PETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVE- 734

Query: 440  SNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEN 261
                   V+D++ +   + +PV+  D HN   ND A+  D+ HD+       L  E    
Sbjct: 735  ------HVDDDTGV---QVEPVDEQDDHN---NDVAD--DDAHDDVQQTPPILQLE---- 776

Query: 260  DNLNDYVLTRDRTRRNIRIPNK-FADFHLTSYVFSVFESIEN-SEPKTYIDAVNSVNSVK 87
                D  + + +++R  + P +   + +L+ Y  S  E +EN  EP TY +AV   +S  
Sbjct: 777  ---EDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 833

Query: 86   WMSAMQDEMTSLYVNNTWELVPKP 15
            W+SAM +EM SL  N+TWE+VP P
Sbjct: 834  WISAMHEEMQSLEKNSTWEVVPLP 857



 Score = 23.5 bits (49), Expect(2) = 3e-39
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS + ++K+FW EA  TA
Sbjct: 605 LSHARMNKRFWAEAASTA 622


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  157 bits (397), Expect(2) = 5e-39
 Identities = 95/273 (34%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
 Frame = -3

Query: 785  SCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGY 606
            + +++NRSP   +  K P++VWSGKP ++S LKIFGC A+ H    KL+PR++KC+FLGY
Sbjct: 940  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 999

Query: 605  PDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNVPS 426
              GVKGYRLW   +   K +ISRDV F+E+                     + E  ++  
Sbjct: 1000 ATGVKGYRLWCTEDRTPKFIISRDVTFDESAMF----------------GQRKEFGDLAG 1043

Query: 425  ISVND--NSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S  D   +  ++ E D    N V            D+  +E P++D        +ND+ 
Sbjct: 1044 TSKTDLGANQKVEFEVDAPMENGV------------DDTSEEQPVID--------QNDSQ 1083

Query: 251  NDYVLTRDRTRRNIRIPNKFADF------HLTSYVFSVFESIENSEPKTYIDAVNSVNSV 90
            +   +   R RR IR P ++ D       +  ++  +V E I   EP++Y +A+ S +S 
Sbjct: 1084 S---IAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSK 1140

Query: 89   KWMSAMQDEMTSLYVNNTWELVP-----KPINC 6
            KW+S+M DEM SL  N TWELVP     KP++C
Sbjct: 1141 KWLSSMDDEMASLRKNQTWELVPLPEGVKPVDC 1173



 Score = 31.2 bits (69), Expect(2) = 5e-39
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -1

Query: 826 SGLSKKFWGEAVHTAA 779
           +GLSKKFW EAV+TAA
Sbjct: 926 AGLSKKFWAEAVNTAA 941


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  157 bits (397), Expect(2) = 5e-39
 Identities = 95/273 (34%), Positives = 142/273 (52%), Gaps = 13/273 (4%)
 Frame = -3

Query: 785  SCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGY 606
            + +++NRSP   +  K P++VWSGKP ++S LKIFGC A+ H    KL+PR++KC+FLGY
Sbjct: 727  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 786

Query: 605  PDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNVPS 426
              GVKGYRLW   +   K +ISRDV F+E+                     + E  ++  
Sbjct: 787  ATGVKGYRLWCTEDRTPKFIISRDVTFDESAMF----------------GQRKEFGDLAG 830

Query: 425  ISVND--NSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S  D   +  ++ E D    N V            D+  +E P++D        +ND+ 
Sbjct: 831  TSKTDLGANQKVEFEVDAPMENGV------------DDTSEEQPVID--------QNDSQ 870

Query: 251  NDYVLTRDRTRRNIRIPNKFADF------HLTSYVFSVFESIENSEPKTYIDAVNSVNSV 90
            +   +   R RR IR P ++ D       +  ++  +V E I   EP++Y +A+ S +S 
Sbjct: 871  S---IAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSK 927

Query: 89   KWMSAMQDEMTSLYVNNTWELVP-----KPINC 6
            KW+S+M DEM SL  N TWELVP     KP++C
Sbjct: 928  KWLSSMDDEMASLRKNQTWELVPLPEGVKPVDC 960



 Score = 31.2 bits (69), Expect(2) = 5e-39
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -1

Query: 826 SGLSKKFWGEAVHTAA 779
           +GLSKKFW EAV+TAA
Sbjct: 713 AGLSKKFWAEAVNTAA 728


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  159 bits (403), Expect(2) = 6e-39
 Identities = 101/269 (37%), Positives = 149/269 (55%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWSG P ++S+L++FGC+A+ H    KL+PR++KC+FL
Sbjct: 598  STACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFL 657

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GY  GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 658  GYASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNV----------PVESQEK 705

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P    DV   I  D   + D+        D+ + H+  +    
Sbjct: 706  ASVQV---EHLISSGHAP-EKEDV--AINQDAPVIEDS--------DSSIVHQSPKRS-- 749

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
                + +D+ +RNI+ P ++  +  + +Y  SV E IE N+EP TY +A+ S +  +W++
Sbjct: 750  ----IAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWIT 805

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWELV      KPI C
Sbjct: 806  AMHDEMESLEKNHTWELVKLPKEKKPIRC 834



 Score = 28.5 bits (62), Expect(2) = 6e-39
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS +GL K+FW EAV TA
Sbjct: 583 LSNAGLPKQFWAEAVSTA 600


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  164 bits (415), Expect(2) = 8e-39
 Identities = 102/264 (38%), Positives = 153/264 (57%), Gaps = 3/264 (1%)
 Frame = -3

Query: 797  SCSYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCV 618
            + S +C++INRSP +PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR++KC+
Sbjct: 616  AASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCL 675

Query: 617  FLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDV-SKNVSETQNSTTPNKVEL 441
            FLGY  GVKGY+LW+  E G K  +SR VVFNE+      + S++V E +      +VE 
Sbjct: 676  FLGYGSGVKGYKLWN-PETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVE- 732

Query: 440  SNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEN 261
                   V+D++ +   + +PV+  D HN   ND A+  D+ HD+       L  E    
Sbjct: 733  ------HVDDDTGV---QVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPILQLE---- 774

Query: 260  DNLNDYVLTRDRTRRNIRIPNK-FADFHLTSYVFSVFESIEN-SEPKTYIDAVNSVNSVK 87
                +  + + +++R  + P +   + +L+ Y  S  E +EN  EP TY +AV   +S  
Sbjct: 775  ---EELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 831

Query: 86   WMSAMQDEMTSLYVNNTWELVPKP 15
            W+SAM +EM SL  N+TWE+VP P
Sbjct: 832  WISAMHEEMQSLEKNSTWEVVPLP 855



 Score = 23.5 bits (49), Expect(2) = 8e-39
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS + ++K+FW EA  TA
Sbjct: 603 LSHARMNKRFWAEAASTA 620


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  164 bits (415), Expect(2) = 8e-39
 Identities = 101/263 (38%), Positives = 147/263 (55%), Gaps = 2/263 (0%)
 Frame = -3

Query: 797  SCSYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCV 618
            + S +C++INRSP +PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR++KC+
Sbjct: 616  AASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCL 675

Query: 617  FLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELS 438
            FLGY  GVKGY+LW+  E G K  +SR VVFNE+           +   +   P K EL 
Sbjct: 676  FLGYGSGVKGYKLWN-PETG-KTFMSRSVVFNESVMF-------TNSLPSEHVPEK-ELQ 725

Query: 437  NVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEND 258
             +  + V    D    + +PV+  D HN   ND A+  D+ HD+       L  E     
Sbjct: 726  RM-HMQVEHVDDYTGVQVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPILQLE----- 774

Query: 257  NLNDYVLTRDRTRRNIRIPNK-FADFHLTSYVFSVFESIEN-SEPKTYIDAVNSVNSVKW 84
               +  + + +++R  + P +   + +L+ Y  S  E +EN  EP TY +AV   +S  W
Sbjct: 775  --EELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 832

Query: 83   MSAMQDEMTSLYVNNTWELVPKP 15
            +SAM +EM SL  N+TWE+VP P
Sbjct: 833  ISAMHEEMQSLEKNSTWEVVPLP 855



 Score = 23.5 bits (49), Expect(2) = 8e-39
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS + ++K+FW EA  TA
Sbjct: 603 LSHARMNKRFWAEAASTA 620


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  164 bits (415), Expect(2) = 8e-39
 Identities = 102/264 (38%), Positives = 153/264 (57%), Gaps = 3/264 (1%)
 Frame = -3

Query: 797  SCSYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCV 618
            + S +C++INRSP +PL  K P +VWSG P D+S LK+FGC+A+ H    KL+PR++KC+
Sbjct: 616  AASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCL 675

Query: 617  FLGYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDV-SKNVSETQNSTTPNKVEL 441
            FLGY  GVKGY+LW+  E G K  +SR VVFNE+      + S++V E +      +VE 
Sbjct: 676  FLGYGSGVKGYKLWN-PETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKELQRMHMQVE- 732

Query: 440  SNVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEN 261
                   V+D++ +   + +PV+  D HN   ND A+  D+ HD+       L  E    
Sbjct: 733  ------HVDDDTGV---QVEPVHEQDDHN---NDVAD--DDAHDDVQQTPPILQLE---- 774

Query: 260  DNLNDYVLTRDRTRRNIRIPNK-FADFHLTSYVFSVFESIEN-SEPKTYIDAVNSVNSVK 87
                +  + + +++R  + P +   + +L+ Y  S  E +EN  EP TY +AV   +S  
Sbjct: 775  ---EELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSEN 831

Query: 86   WMSAMQDEMTSLYVNNTWELVPKP 15
            W+SAM +EM SL  N+TWE+VP P
Sbjct: 832  WISAMHEEMQSLEKNSTWEVVPLP 855



 Score = 23.5 bits (49), Expect(2) = 8e-39
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS + ++K+FW EA  TA
Sbjct: 603 LSHARMNKRFWAEAASTA 620


>emb|CAN69199.1| hypothetical protein VITISV_025494 [Vitis vinifera]
          Length = 540

 Score =  157 bits (398), Expect(2) = 1e-38
 Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 2/247 (0%)
 Frame = -3

Query: 785 SCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGY 606
           +C+++NR+P   +  K  E++WSGKP ++ +L+IFGC+ +VHQ   KL  RS+KC+FLGY
Sbjct: 315 TCYLVNRTPSSAIDLKTLEELWSGKPSNYDHLRIFGCTTYVHQSEGKLVTRSIKCIFLGY 374

Query: 605 PDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNVPS 426
           P+GVKGY+LW+K  +G K++ISRDVVFNENE L +         + +T   K +  N  S
Sbjct: 375 PEGVKGYKLWNKESSGVKIIISRDVVFNENEMLFM---------RTNTAGIKKDSKN-KS 424

Query: 425 ISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNLN- 249
           ++++ +    + E    + +D  ND+ +   E    +     ++ + +      N     
Sbjct: 425 LTLDKDHFKFEVELSSQDGHDQQNDLAHGGLETKGTK-----VIGSNVEGGVGTNSQEAG 479

Query: 248 -DYVLTRDRTRRNIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSVNSVKWMSAM 72
            DY+L+RDR +RNI+ P+KF    L +Y        E SEP +Y +A+N+        AM
Sbjct: 480 LDYLLSRDRAKRNIKPPDKFGFADLIAYALLTTMEYEESEPLSYQEAINN------NEAM 533

Query: 71  QDEMTSL 51
            +E  SL
Sbjct: 534 SEEFESL 540



 Score = 29.3 bits (64), Expect(2) = 1e-38
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHT 785
           L +SGLSK FWGEAV T
Sbjct: 298 LYSSGLSKHFWGEAVMT 314


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  160 bits (405), Expect(2) = 7e-38
 Identities = 98/269 (36%), Positives = 150/269 (55%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP      K P +VWSG P ++S+L++FGC+A+ H    KL+PR++KC+FL
Sbjct: 661  STTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFL 720

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 721  GYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNV----------PVESQEK 768

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P          E +N  +N     + P+++   + + +     
Sbjct: 769  ASVQV---EHLISSGHAP----------EKENVAIN----QDAPVIE---DSDSSIVQQS 808

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
            +   + +D+ +RNI+ P ++  + ++ +Y  SV E IE N+EP TY +A+ S +  +W++
Sbjct: 809  SKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWIT 868

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWE V      KPI C
Sbjct: 869  AMHDEMESLKKNHTWEFVKLPKEKKPIRC 897



 Score = 24.3 bits (51), Expect(2) = 7e-38
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHT 785
           LS + L K+FW EAV T
Sbjct: 646 LSNADLPKQFWAEAVST 662


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  160 bits (405), Expect(2) = 7e-38
 Identities = 98/269 (36%), Positives = 150/269 (55%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP      K P +VWSG P ++S+L++FGC+A+ H    KL+PR++KC+FL
Sbjct: 661  STTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFL 720

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 721  GYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNV----------PVESQEK 768

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P          E +N  +N     + P+++   + + +     
Sbjct: 769  ASVQV---EHLISSGHAP----------EKENVAIN----QDAPVIE---DSDSSIVQQS 808

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
            +   + +D+ +RNI+ P ++  + ++ +Y  SV E IE N+EP TY +A+ S +  +W++
Sbjct: 809  SKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWIT 868

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWE V      KPI C
Sbjct: 869  AMHDEMESLKKNHTWEFVKLPKEKKPIRC 897



 Score = 24.3 bits (51), Expect(2) = 7e-38
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHT 785
           LS + L K+FW EAV T
Sbjct: 646 LSNADLPKQFWAEAVST 662


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score =  162 bits (409), Expect(2) = 7e-38
 Identities = 102/273 (37%), Positives = 147/273 (53%), Gaps = 11/273 (4%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWSG P ++S+L++FGC A+ H    KL+PR++KC+FL
Sbjct: 624  STACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFL 683

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 684  GYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNV----------PVESQEK 731

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDN----EHDEFPLVDTKLNHEHAE 264
             S+ V     +I + H P          E +N  +N +    E  +  +V     H    
Sbjct: 732  ASVQV---EHLISSGHAP----------EKENVAINLDAPVIEDSDSSIVQQSPKHS--- 775

Query: 263  NDNLNDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSV 90
                    + +D+ +RNI+ P ++  + ++ +Y  SV E IE N EP TY DA+ S +  
Sbjct: 776  --------IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCN 827

Query: 89   KWMSAMQDEMTSLYVNNTWELV-----PKPINC 6
            +W++AM DEM SL  N+TWELV      KPI C
Sbjct: 828  RWITAMHDEMESLEKNHTWELVKLPKEKKPIRC 860



 Score = 22.7 bits (47), Expect(2) = 7e-38
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 820 LSKKFWGEAVHTA 782
           L K+FW EAV TA
Sbjct: 614 LPKQFWAEAVSTA 626


>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
          Length = 1009

 Score =  156 bits (394), Expect(2) = 7e-38
 Identities = 100/269 (37%), Positives = 146/269 (54%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWS  P  +S+L++F C+A+ H    KL+PR++KC+FL
Sbjct: 447  STACYLINRSPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFL 506

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP GVKGY+LW       KV+I+R+VVF+E+  L    S NV           VE    
Sbjct: 507  GYPSGVKGYKLWCPETK--KVVINRNVVFHESVMLHDKPSTNV----------PVESQEK 554

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P    DV   I  D   + D+        D+ +  +  +    
Sbjct: 555  ASVQV---EHLISSGHAP-EKEDV--AINQDAPVIEDS--------DSSIVQQSPKRS-- 598

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
                + +DR +RN + P K+  + ++ +Y  SV E IE N+EP TY DA+ S +  +W++
Sbjct: 599  ----IAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAIVSDDCNRWIT 654

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWELV      KPI C
Sbjct: 655  AMHDEMESLEKNHTWELVKLPKEKKPIRC 683



 Score = 28.5 bits (62), Expect(2) = 7e-38
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS +GL K+FW EAV TA
Sbjct: 432 LSNAGLPKQFWAEAVSTA 449


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1156

 Score =  160 bits (406), Expect(2) = 9e-38
 Identities = 99/271 (36%), Positives = 141/271 (52%), Gaps = 11/271 (4%)
 Frame = -3

Query: 785  SCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGY 606
            +C++INRSP +PL  K P +VWSG P D+S L++FGC+A+ H    KL+PR++KC+FLGY
Sbjct: 561  ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGY 620

Query: 605  PDGVKGYRLWSKSENGFKVLISRDVVFNE----NEFLCLDVSKNVSETQNSTTPNKVELS 438
              GVKGY+LW+   N  K  +SR VVFNE    N+ L  DV    S+ +      +VE  
Sbjct: 621  GSGVKGYKLWNPKTN--KTFMSRSVVFNESVMFNDSLPTDVILGGSDEEQQYVSVQVE-- 676

Query: 437  NVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEND 258
                         +D +   +  NDV+  +++    L                       
Sbjct: 677  ------------HVDDQETEIVGNDVNVTVQHSPPVLQPQ-------------------- 704

Query: 257  NLNDYVLTRDRTRRNIRIPNKFAD-FHLTSYVFSVFESIENS-EPKTYIDAVNSVNSVKW 84
               D  +   RT+R+   P +F +   +  Y FS  E +EN+ EP TY +AV S +  KW
Sbjct: 705  ---DEPIAHRRTKRSCGAPIRFIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKW 761

Query: 83   MSAMQDEMTSLYVNNTWELV-----PKPINC 6
            +SAMQ+EM SL  N TWELV      KP++C
Sbjct: 762  ISAMQEEMQSLEKNGTWELVHLPKQKKPVHC 792



 Score = 23.5 bits (49), Expect(2) = 9e-38
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           LS + ++K+FW E  +TA
Sbjct: 544 LSNARMNKRFWAEVANTA 561


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  159 bits (402), Expect(2) = 1e-37
 Identities = 97/269 (36%), Positives = 150/269 (55%), Gaps = 7/269 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S +C++INRSP   +  K P +VWS  PV++S+L++FGC+A+ H    KL+PR++KC+FL
Sbjct: 408  STACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFL 467

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP G+KGY+LW       KV+ISR+VVF+E+  L    S NV           VE    
Sbjct: 468  GYPSGMKGYKLWCPKTK--KVVISRNVVFHESVMLHDKPSTNV----------PVESQEK 515

Query: 431  PSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAENDNL 252
             S+ V     +I + H P          E +N  +N     + P+++   + + +     
Sbjct: 516  ASVQV---EHLISSGHAP----------EKENVAIN----QDVPVIE---DSDSSTVQQS 555

Query: 251  NDYVLTRDRTRRNIRIPNKF-ADFHLTSYVFSVFESIE-NSEPKTYIDAVNSVNSVKWMS 78
                + +D+ +RN + P ++  + ++ +Y  SV E IE N+EP TY +A+ S +  +W++
Sbjct: 556  PKRFIAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWIT 615

Query: 77   AMQDEMTSLYVNNTWELV-----PKPINC 6
            AM DEM SL  N+TWELV      KPI C
Sbjct: 616  AMHDEMESLEKNHTWELVKLPKEKKPIRC 644



 Score = 24.6 bits (52), Expect(2) = 1e-37
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 832 STSGLSKKFWGEAVHTA 782
           +T GL K+FW E V TA
Sbjct: 394 TTEGLPKQFWVETVSTA 410


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  159 bits (402), Expect = 1e-36
 Identities = 97/271 (35%), Positives = 141/271 (52%), Gaps = 11/271 (4%)
 Frame = -3

Query: 785  SCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFLGY 606
            +C++INRSP +PL  K P ++WSG P D+S L++FGC+A+ H   +KL+PR++KC+FLGY
Sbjct: 621  ACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGY 680

Query: 605  PDGVKGYRLWSKSENGFKVLISRDVVFNE----NEFLCLDVSKNVSETQNSTTPNKVELS 438
              GVKGY+LW+   N  K  +SR VVFNE    N+ L  DV    S+ +      +VE  
Sbjct: 681  GLGVKGYKLWNPETN--KTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQVE-- 736

Query: 437  NVPSISVNDNSDMIDAEHDPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAEND 258
                         +D +   +  NDV++ +++    L                       
Sbjct: 737  ------------HVDDQETEIVGNDVNDTVQHSPPVLQP--------------------- 763

Query: 257  NLNDYVLTRDRTRRNIRIPNK-FADFHLTSYVFSVFESIENS-EPKTYIDAVNSVNSVKW 84
               D  +   RT+R+   P +   +  +  Y FS  E +EN+ EP TY +AV S +  KW
Sbjct: 764  --QDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSCAEQVENTLEPATYTEAVVSGDREKW 821

Query: 83   MSAMQDEMTSLYVNNTWELV-----PKPINC 6
            +SAMQ+EM SL  N TWELV      KP+ C
Sbjct: 822  ISAMQEEMQSLEKNGTWELVHLPKQKKPVRC 852


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  155 bits (392), Expect(2) = 1e-36
 Identities = 94/267 (35%), Positives = 150/267 (56%), Gaps = 8/267 (2%)
 Frame = -3

Query: 791  SYSCFVINRSPYVPLKGKYPEQVWSGKPVDFSNLKIFGCSAFVHQKVDKLDPRSLKCVFL 612
            S + ++INR+P   +  K PE+VW+G   D S+L+ FGCSA+VH   DK  PR++K VF+
Sbjct: 515  STAVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFM 574

Query: 611  GYPDGVKGYRLWSKSENGFKVLISRDVVFNENEFLCLDVSKNVSETQNSTTPNKVELSNV 432
            GYP G+KGYR+W   E   K   SR+VVFNE E L  D   +  E +        +L   
Sbjct: 575  GYPCGIKGYRVWLPKEG--KCTTSRNVVFNETE-LYKDTLSSADERKEEAEKEYKKLKKA 631

Query: 431  PSISVNDNSDMIDAEH----DPVNANDVHNDIENDNAELNDNEHDEFPLVDTKLNHEHAE 264
                V+ + D++        D  +++    +  + ++E ++N      L ++++N E   
Sbjct: 632  RK-RVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSEN------LEESEMNEEVVG 684

Query: 263  NDN---LNDYVLTRDRTRR-NIRIPNKFADFHLTSYVFSVFESIENSEPKTYIDAVNSVN 96
            ++N   L+DY+L RD  RR NIR P++F D    +Y  +  E +E  EPK+Y +A+ S  
Sbjct: 685  SENEQSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSK 744

Query: 95   SVKWMSAMQDEMTSLYVNNTWELVPKP 15
              +W +AM++EM S   ++TW+L+ KP
Sbjct: 745  RKQWENAMKEEMDSHKKSHTWDLIEKP 771



 Score = 25.0 bits (53), Expect(2) = 1e-36
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 835 LSTSGLSKKFWGEAVHTA 782
           L+ +G+S++FW EA  TA
Sbjct: 500 LAETGMSQEFWAEATSTA 517