BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00014301
         (1287 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   366   1e-98
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   361   3e-97
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   360   9e-97
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           360   9e-97
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   340   6e-91
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       335   2e-89
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               334   4e-89
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   332   3e-88
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   329   2e-87
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                323   7e-86
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   323   1e-85
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   322   3e-85
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   319   1e-84
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   318   2e-84
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   318   2e-84
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   314   4e-83
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               313   1e-82
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   309   1e-81
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   306   1e-80
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   305   3e-80

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  366 bits (939), Expect = 1e-98
 Identities = 175/422 (41%), Positives = 263/422 (62%), Gaps = 1/422 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQS-QPTD 1102
            D  +K F    K     N I  L  EDG +    ++V +E++ +Y++L GT   +    D
Sbjct: 357  DTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVD 416

Query: 1101 PAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGND 922
               +  G+ L+ +  + L  EV   E+  AL  + +DK+ G DGF++ FFKK+W  +  +
Sbjct: 417  LNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQE 476

Query: 921  FLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLS 742
              A ++EFF + ++ +  N  +V L+PK  H   V +FRPI+CC+V YK+ISK+L  R+ 
Sbjct: 477  IYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMK 536

Query: 741  SVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKF 562
             ++G ++NEAQ+ F+ GR I DNI L  EL+RGY RK +SPRCI+K+D++KA+DSV W F
Sbjct: 537  GIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSF 596

Query: 561  LEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICL 382
            LE +L    FP  F+ W+MECV++ S+S+ VNG     FQ +KGLRQGDP+SP+LF +C+
Sbjct: 597  LETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCM 656

Query: 381  EYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNK 202
            EYLSR L++      F FHPKC  L ITHL FADDL++  R D +S+  +    + F + 
Sbjct: 657  EYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHA 716

Query: 201  SGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTR 22
            SGL  +  KSNI+  G+ +   R++  + ++  G +PFRYLG+PLT+++L  A  + L  
Sbjct: 717  SGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVE 776

Query: 21   KI 16
             I
Sbjct: 777  MI 778


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  361 bits (927), Expect = 3e-97
 Identities = 187/426 (43%), Positives = 275/426 (64%), Gaps = 5/426 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQPTDP 1099
            D  T FFH M       N I  L  + G    + +++    V+++++LFG+       + 
Sbjct: 363  DSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEG 422

Query: 1098 AILANGQSLNREEWDG-----LTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTI 934
                N  SL R + D      L AEV++ ++ S    +  +KS GPDG++S+FFKKTW+I
Sbjct: 423  ISQIN--SLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSI 480

Query: 933  VGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILA 754
            VG   +AAV+EFF SG+LL QWN   V ++PK  +   +++FRPISCC+  YKVISK+LA
Sbjct: 481  VGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLA 540

Query: 753  TRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSV 574
             RL ++L   I+ +Q+AFVKGR + +N+ L  EL++G+ +  IS R ++K+DL+KAFDSV
Sbjct: 541  RRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSV 600

Query: 573  SWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLF 394
             W F+ E LK  + PP F++W+ +C+TSTSFS++V+G L G+F+G KGLRQGDPLSP LF
Sbjct: 601  GWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLF 660

Query: 393  VICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIED 214
            VI +E LSRLL+ +       +HPK   +RI+ LAFADDLM+   G  +S+R +   +E 
Sbjct: 661  VIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLES 720

Query: 213  FGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFE 34
            F N SGL MN  KS ++ AG+++ D  D L+F  ++ G+ PFRYLG+PL   +L+ + + 
Sbjct: 721  FKNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFGFVN-GTFPFRYLGLPLLHRKLRRSDYS 779

Query: 33   ELTRKI 16
            +L  KI
Sbjct: 780  QLIDKI 785


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  360 bits (923), Expect = 9e-97
 Identities = 183/431 (42%), Positives = 275/431 (63%), Gaps = 6/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQ--SQPT 1105
            D  T +FH M       N I+SL   +G L +S + +    V YYE+L G+     S   
Sbjct: 225  DSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQ 284

Query: 1104 DPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGN 925
            +   L      ++++   L    TD+E+ +A K++  +K+SGPDG+S +FF+ TW+I+G 
Sbjct: 285  EDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGP 344

Query: 924  DFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRL 745
            + LAA+ EFF SGQLLKQWN   + LIPKT++  T+S+FRPISC +  YKVISK+L +RL
Sbjct: 345  EVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRL 404

Query: 744  SSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWK 565
              +L  +I  +Q+AF+ GRS+ +N+ L  E++ GYNR  ISPR ++K+DLKKAFDSV W+
Sbjct: 405  QGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWE 464

Query: 564  FLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVIC 385
            F+   L+ L  P  +I+W+ +C+T+ SF++SVNG   G F+  KGLRQGDPLSPYLFV+ 
Sbjct: 465  FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524

Query: 384  LEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGN 205
            +E  S+LL  R D     +HPK   L I+HL FADD+M+   G  +S+  + E ++DF +
Sbjct: 525  MEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFAD 584

Query: 204  KSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHF---- 37
             SGL++N  KS +F AG+ +   R   +      G+ P RYLG+PL   +L++A +    
Sbjct: 585  WSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLL 643

Query: 36   EELTRKIRTYI 4
            E+L+ ++R+++
Sbjct: 644  EKLSARLRSWV 654


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  360 bits (923), Expect = 9e-97
 Identities = 183/431 (42%), Positives = 275/431 (63%), Gaps = 6/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQ--SQPT 1105
            D  T +FH M       N I+SL   +G L +S + +    V YYE+L G+     S   
Sbjct: 225  DSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQ 284

Query: 1104 DPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGN 925
            +   L      ++++   L    TD+E+ +A K++  +K+SGPDG+S +FF+ TW+I+G 
Sbjct: 285  EDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGP 344

Query: 924  DFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRL 745
            + LAA+ EFF SGQLLKQWN   + LIPKT++  T+S+FRPISC +  YKVISK+L +RL
Sbjct: 345  EVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRL 404

Query: 744  SSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWK 565
              +L  +I  +Q+AF+ GRS+ +N+ L  E++ GYNR  ISPR ++K+DLKKAFDSV W+
Sbjct: 405  QGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWE 464

Query: 564  FLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVIC 385
            F+   L+ L  P  +I+W+ +C+T+ SF++SVNG   G F+  KGLRQGDPLSPYLFV+ 
Sbjct: 465  FVTAALRALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLA 524

Query: 384  LEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGN 205
            +E  S+LL  R D     +HPK   L I+HL FADD+M+   G  +S+  + E ++DF +
Sbjct: 525  MEVFSKLLYSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFAD 584

Query: 204  KSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHF---- 37
             SGL++N  KS +F AG+ +   R   +      G+ P RYLG+PL   +L++A +    
Sbjct: 585  WSGLKVNKDKSQLFQAGL-DLSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLL 643

Query: 36   EELTRKIRTYI 4
            E+L+ ++R+++
Sbjct: 644  EKLSARLRSWV 654


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  340 bits (873), Expect = 6e-91
 Identities = 170/424 (40%), Positives = 251/424 (59%), Gaps = 1/424 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEH-QSQPTD 1102
            D  +KFF    K    +N I  L  + G       ++  E+ N+Y +L GT   Q +  D
Sbjct: 360  DSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAID 419

Query: 1101 PAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGND 922
              ++  G  L+      L   +T +E+  AL +++D K+ G DGF+S FFKK+W ++  +
Sbjct: 420  LHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQE 479

Query: 921  FLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLS 742
                + +FF +G + K  N   V LIPK        D+RPI+CCS  YK+ISKIL  RL 
Sbjct: 480  IYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQ 539

Query: 741  SVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKF 562
            +V+  +++ AQ  F+  R I DNI L  EL+RGYNR+ +SPRC+IK+D++KA+DSV W F
Sbjct: 540  AVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVF 599

Query: 561  LEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICL 382
            LE MLK L FP +FI W+M CV + S+S+ +NG     F  +KGLRQGDPLSP+LF + +
Sbjct: 600  LESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSM 659

Query: 381  EYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNK 202
            EYLSR +        F FHPKC  +++THL FADDL++ +R D +S+  ++     F   
Sbjct: 660  EYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKA 719

Query: 201  SGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTR 22
            SGL+ ++ KS I+  G+   +   +     +  GS+PFRYLG+PL +++L  +  + L  
Sbjct: 720  SGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLID 779

Query: 21   KIRT 10
            KI T
Sbjct: 780  KITT 783


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  335 bits (860), Expect = 2e-89
 Identities = 174/424 (41%), Positives = 269/424 (63%), Gaps = 3/424 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTE---HQSQP 1108
            D  TK+FH MA      N IS+L   +G L +S E +     +Y+  L G E   +  + 
Sbjct: 365  DGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYLMEQ 424

Query: 1107 TDPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVG 928
             D  +L + +    +  + L +  ++E++ +AL ++  +KS GPDGF+++FF  +W+IVG
Sbjct: 425  NDMNLLLSYRCSPAQVCE-LESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVG 483

Query: 927  NDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATR 748
             +   A+KEFF+SG LLKQWN   + LIPK  +    SDFRPISC +  YKVI+++L  R
Sbjct: 484  AEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDR 543

Query: 747  LSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSW 568
            L  +L  +I+ AQ+AF+ GRS+ +N+ L  +L+ GYN   ISPR ++K+DLKKAFDSV W
Sbjct: 544  LQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRW 603

Query: 567  KFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVI 388
            +F+   L+ L  P  FI+W+ +C+++ +F++S+NGG  G F+  KGLRQGDPLSPYLFV+
Sbjct: 604  EFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVL 663

Query: 387  CLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFG 208
             +E  S LL  R +     +HPK   L I+HL FADD+M+   G   S+  + E ++DF 
Sbjct: 664  AMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFA 723

Query: 207  NKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEEL 28
            + SGL++N  KS++++AG+ + ++    ++     G++P RYLG+PL   +L++A +E L
Sbjct: 724  SWSGLKVNKDKSHLYLAGLNQLESNANAAY-GFPIGTLPIRYLGLPLMNRKLRIAEYEPL 782

Query: 27   TRKI 16
              KI
Sbjct: 783  LEKI 786


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  334 bits (857), Expect = 4e-89
 Identities = 184/428 (42%), Positives = 257/428 (60%), Gaps = 7/428 (1%)
 Frame = -1

Query: 1266 KFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQPTD--PAI 1093
            K FH        KN I  +   DG +       G +++   E+ F    Q  P D     
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQ-----GDDIMVEAEKFFKEFLQLIPEDFVGVE 76

Query: 1092 LANGQSL-----NREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVG 928
            +   Q L        + + LT EV+ EE+ + L ++  DKS GPDG++S+F+K TW I+G
Sbjct: 77   VRELQDLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIG 136

Query: 927  NDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATR 748
             +F   V+ FF  G L K  N  I+ALIPK      + D+RPISCC+V YKVISKI+A R
Sbjct: 137  QEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANR 196

Query: 747  LSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSW 568
            L  +L   I E Q+AFVK R +++N+ L  EL++ Y++  IS RC IKID+ KAFDSV W
Sbjct: 197  LKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQW 256

Query: 567  KFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVI 388
             FL   L  ++F P FI W+  C+T+ SFS+ VNG L G+FQ K+GLRQG  LSPYLFVI
Sbjct: 257  SFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVI 316

Query: 387  CLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFG 208
            C++ LS++L K      F FHPKC+ L +THL+FADDLM+LS G   S+  +LE  ++F 
Sbjct: 317  CMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFC 376

Query: 207  NKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEEL 28
             +SGLR+++ KS ++MAG+     ++I +      G +P RYLG+PL  +RL  A +  L
Sbjct: 377  KRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPL 436

Query: 27   TRKIRTYI 4
              +I+  I
Sbjct: 437  LEQIKKRI 444


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  332 bits (850), Expect = 3e-88
 Identities = 179/432 (41%), Positives = 252/432 (58%), Gaps = 7/432 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQPTD- 1102
            D+ TK FH  A      N I  +   DG +    +++  E   ++ +      Q  P D 
Sbjct: 370  DQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFL----QLIPNDF 425

Query: 1101 -PAILANGQSL-----NREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTW 940
                +   Q L     +  +   L   VT EE+   L  +  DKS GPDG++S+FFK TW
Sbjct: 426  EGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATW 485

Query: 939  TIVGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKI 760
             I+G++F  AV+ FF  G L K  N  I+ALIPK T    + D+RPISCC+V YKVISKI
Sbjct: 486  EIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKI 545

Query: 759  LATRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFD 580
            +A RL  VL   I   Q+AFVK R +++N+ L  EL++ Y++  IS RC IKID+ KAFD
Sbjct: 546  IANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFD 605

Query: 579  SVSWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPY 400
            SV W FL  +   L FP  FI W+  C+T+ SFS+ VNG L G+FQ  +GLRQG  LSPY
Sbjct: 606  SVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPY 665

Query: 399  LFVICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECI 220
            LFVIC++ LS++L K      F +HPKC+ + +THL+FADDLM+LS G   S+  +++  
Sbjct: 666  LFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVF 725

Query: 219  EDFGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAH 40
            ++F   SGLR+++ KS +++AG+      ++      S G +P RYLG+PL  +RL    
Sbjct: 726  DEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTD 785

Query: 39   FEELTRKIRTYI 4
               L  ++R  I
Sbjct: 786  CLPLLEQVRKRI 797


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  329 bits (843), Expect = 2e-87
 Identities = 169/423 (39%), Positives = 254/423 (60%), Gaps = 2/423 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQPTDP 1099
            D  + +FH MA      N+I  L+   G      + +    V Y++   G+E      + 
Sbjct: 262  DMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQ 321

Query: 1098 AILANGQSL--NREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGN 925
            A ++N  S   +  +   L    + E++ +A  ++  +K+SGPDGFS +FF   W I+G 
Sbjct: 322  ADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGG 381

Query: 924  DFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRL 745
            +   A+ EFF SG+LLKQWN   + LIPK T+  ++SDFRPISC +  YKVISK+L  RL
Sbjct: 382  EVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRL 441

Query: 744  SSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWK 565
               L   I+ +Q+AF+ GR  ++N+ L  EL+ GYN+K I+P  ++K+DL+KAFDSV W 
Sbjct: 442  KDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWD 501

Query: 564  FLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVIC 385
            F+   L+ L+ P  F  W++EC+++ SFS+ +NG   GHF   KGLRQGDP+SPYLFV+ 
Sbjct: 502  FIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLA 561

Query: 384  LEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGN 205
            +E  S LL+ R       +HPK   L I+HL FADD+M+   G  +S+  ++E +EDF  
Sbjct: 562  MEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAG 621

Query: 204  KSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELT 25
             SGL MN  K+ ++ AG+ + ++  + S+     GS+P RYLG+PL + +L +A +  L 
Sbjct: 622  WSGLLMNTNKTQLYHAGLSQSESDSMASY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLI 680

Query: 24   RKI 16
             KI
Sbjct: 681  EKI 683


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  323 bits (829), Expect = 7e-86
 Identities = 161/351 (45%), Positives = 227/351 (64%)
 Frame = -1

Query: 1056 DGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLL 877
            D LT EVT EE    L  +  +K  GPDG++S+FFK TW+I G DF+AA+K FF  G L 
Sbjct: 20   DMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLP 79

Query: 876  KQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFV 697
            K  N  I+ALIPK      + D+RPISCC+V YKVISKI+A RL  +L   I + Q+AFV
Sbjct: 80   KGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFV 139

Query: 696  KGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFI 517
            + R +++N+ L  EL++ Y++  ISPRC +KID+ KAFDSV W+FL   L+ L+FP  F 
Sbjct: 140  RERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFC 199

Query: 516  SWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSG 337
             W+  C+++ +FS+ VNG L G F  K+GLRQG  LSPYLFVIC+  LS ++        
Sbjct: 200  HWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRN 259

Query: 336  FKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMA 157
              +HPKC+ L +THL FADDLM+   G   SV  ++   ++F  KSGL +++ KS +++A
Sbjct: 260  IGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLA 319

Query: 156  GIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYI 4
            G+ E +  +ILS    + G +P RYLG+PL  +++  A +  L  K+R+ I
Sbjct: 320  GVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKI 370


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  323 bits (828), Expect = 1e-85
 Identities = 167/428 (39%), Positives = 255/428 (59%), Gaps = 3/428 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGT---EHQSQP 1108
            D+  K FH         N I  +   DG +  S + +  E VNY++    T   +++   
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMC 150

Query: 1107 TDPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVG 928
             +          + ++   LT  VT EE+   + ++  DKS GPDG++S+F+K +W I+G
Sbjct: 151  VEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIG 210

Query: 927  NDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATR 748
            ++ + A++ FFA G L K  N  I+ALIPK      + D+RPISCC+V YK ISKILA R
Sbjct: 211  DEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANR 270

Query: 747  LSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSW 568
            L  +L   I   Q+AFVK R +++N+ L  EL++ Y++  IS RC +KID+ KAFDS+ W
Sbjct: 271  LKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQW 330

Query: 567  KFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVI 388
             FL  +L  ++FP  FI W+  C+++ SFS+ VNG L G+F+  +GLRQG  LSPYLFVI
Sbjct: 331  SFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVI 390

Query: 387  CLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFG 208
             ++ LSR+L K      F +HP+C+ L +THL FADDLM+L+ G   SV  +++ +  F 
Sbjct: 391  SMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFA 450

Query: 207  NKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEEL 28
             K GL++ + K+ +++AG+ +   + + S  +   G +P RYLG+PL  +RL  + +  L
Sbjct: 451  AKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPL 510

Query: 27   TRKIRTYI 4
              +IR  I
Sbjct: 511  IDQIRRRI 518


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  322 bits (824), Expect = 3e-85
 Identities = 167/431 (38%), Positives = 262/431 (60%), Gaps = 7/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYE---QLFGTEHQSQP 1108
            D+  K FH        +N I  +   DGS+ +  E++  E  +++    QL   + +   
Sbjct: 258  DRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPNDFEGIA 317

Query: 1107 TDPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVG 928
             +          +  + + LT  V+ EE+   + ++ +DKS GPDG++++F+K  W I+G
Sbjct: 318  VEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIG 377

Query: 927  NDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATR 748
             +F+ A++ FFA G L K  N  I+ALIPK      + D+RPISCC+V YKVISKI+A R
Sbjct: 378  AEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANR 437

Query: 747  LSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSW 568
            L  VL   I   Q+AFVK R +++N+ L  E+++ Y++  +S RC +KID+ KAFDSV W
Sbjct: 438  LKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQW 497

Query: 567  KFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVI 388
            KFL  +L+ ++FPP F  W+  C+T+ SFS+ VNG L G F   + LRQG  LSPYLFVI
Sbjct: 498  KFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVI 557

Query: 387  CLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFG 208
             ++ LS++L K      F +HPKCR + +THL+FADDLM+LS G   S+  +++ + +F 
Sbjct: 558  SMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFA 617

Query: 207  NKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAH---- 40
              SGL++++ KS +++AG++    ++I+   +   G +P RYLG+PL ++RL  +     
Sbjct: 618  KWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPL 677

Query: 39   FEELTRKIRTY 7
             E+L +KI  +
Sbjct: 678  IEQLRKKIEAW 688


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  319 bits (818), Expect = 1e-84
 Identities = 171/431 (39%), Positives = 265/431 (61%), Gaps = 7/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSL----EQVGKELVNYYEQLF-GTEHQS 1114
            D  T +FH MA      N I+ L  + G    +     E + +   N++E L  G E ++
Sbjct: 362  DNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGEN 421

Query: 1113 Q--PTDPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTW 940
                +D  +L + +  + ++ + L    +D ++  A  ++  +K+SGPDG+SS+FFK  W
Sbjct: 422  SLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVW 480

Query: 939  TIVGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKI 760
             +VG +   AV+EFF SGQLLKQWN   + LIPK T+   ++DFRPISC +  YKVI+K+
Sbjct: 481  FVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKL 540

Query: 759  LATRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFD 580
            L +RL  +L  +I+ +Q+AF+ GR + +N+ L  E++ GYN K IS R ++K+DL+KAFD
Sbjct: 541  LTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFD 600

Query: 579  SVSWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPY 400
            SV W F+    + L  P  F+ W+ +C+++  FS+ VNG   G F+  KGLRQGDPLSPY
Sbjct: 601  SVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPY 660

Query: 399  LFVICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECI 220
            LFV+ +E  S LLK R D    ++HPK   L I+HL FADD+M+   G  +S+  + E +
Sbjct: 661  LFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEAL 720

Query: 219  EDFGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAH 40
            +DF + SGL +N  K+N+++AG  E +   I S       ++P RYLG+PL + +LK++ 
Sbjct: 721  DDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKISE 779

Query: 39   FEELTRKIRTY 7
            + EL ++ R++
Sbjct: 780  Y-ELVKRFRSW 789


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  318 bits (816), Expect = 2e-84
 Identities = 171/431 (39%), Positives = 264/431 (61%), Gaps = 7/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSL----EQVGKELVNYYEQLF-GTEHQS 1114
            D  T +FH MA      N I+ L  + G    +     E + +   N++E L  G E ++
Sbjct: 362  DNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGEN 421

Query: 1113 Q--PTDPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTW 940
                +D  +L + +  + ++ + L    +D ++  A  ++  +K+SGPDG+SS+FFK  W
Sbjct: 422  SLAQSDMNLLLSFRC-SVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVW 480

Query: 939  TIVGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKI 760
             +VG +   AV+EFF SGQLLKQWN   + LIPK T+   ++DFRPISC +  YKVI+K+
Sbjct: 481  FVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKL 540

Query: 759  LATRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFD 580
            L +RL  +L  +I+ +Q+AF+ GR + +N+ L  E++ GYN K IS R ++K+DL+KAFD
Sbjct: 541  LTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFD 600

Query: 579  SVSWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPY 400
            SV W F+    + L  P  F+ W+ +C+++  FS+ VNG   G F+  KGLRQGDPLSPY
Sbjct: 601  SVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPY 660

Query: 399  LFVICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECI 220
            LFV+ +E  S LLK R D     +HPK   L I+HL FADD+M+   G  +S+  + E +
Sbjct: 661  LFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEAL 720

Query: 219  EDFGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAH 40
            +DF + SGL +N  K+N+++AG  E +   I S       ++P RYLG+PL + +LK++ 
Sbjct: 721  DDFASWSGLHVNKDKTNLYLAGTDEVEALAI-SHYGFPISTLPIRYLGLPLMSRKLKISE 779

Query: 39   FEELTRKIRTY 7
            + EL ++ R++
Sbjct: 780  Y-ELVKRFRSW 789


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  318 bits (816), Expect = 2e-84
 Identities = 169/431 (39%), Positives = 252/431 (58%), Gaps = 6/431 (1%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLF----GTEHQSQ 1111
            D    +FH  A+    +N I  +   +     + E++  E   ++ +      G  H   
Sbjct: 667  DGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGIS 726

Query: 1110 PTDPAILANGQSLNREEWDG--LTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWT 937
              D   L N  S      D   LT EVT EE+   L  + ++KS GPDG++S+FFK TW+
Sbjct: 727  VED---LRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783

Query: 936  IVGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKIL 757
            + G DF+AA++ FF  G L K  N  I+ALIPK      + D+RPISCC+V YKVISKIL
Sbjct: 784  LTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKIL 843

Query: 756  ATRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDS 577
            A RL  +L   I + Q+AFVK R +++N+ L  EL++ Y+++ ++PRC +KID+ KAFDS
Sbjct: 844  ANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDS 903

Query: 576  VSWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYL 397
            V W+FL   L+ L+FP  F  W+  C+++ +FS+ VNG L G F   +GLRQG  LSPYL
Sbjct: 904  VQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYL 963

Query: 396  FVICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIE 217
            FVIC+  LS ++ +        +HPKC  + +THL FADDLM+   G   S+  ++   +
Sbjct: 964  FVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFK 1023

Query: 216  DFGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHF 37
            +F  +SGL++++ KS I++AG+   D    LS    + G +P RYLG+PL  +++  A +
Sbjct: 1024 EFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADY 1083

Query: 36   EELTRKIRTYI 4
              L   ++T I
Sbjct: 1084 SPLIEAVKTKI 1094


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 402

 Score =  314 bits (805), Expect = 4e-83
 Identities = 157/361 (43%), Positives = 233/361 (64%), Gaps = 1/361 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQP-TD 1102
            D  TKFFHA AK    +N I  L  EDG+  +    + +E+  +Y +L G+   S P  D
Sbjct: 40   DSNTKFFHAYAKERRCQNNIKFLITEDGTRIDKHNLIKEEIRGFYLKLMGSSVDSLPMVD 99

Query: 1101 PAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGND 922
              ++  G  L++ + D L ++ T  EV + L +++  K+ G DG++  FFK +W I+G+ 
Sbjct: 100  KNVVKRGPMLSQHQQDLLCSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWNIIGDS 159

Query: 921  FLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLS 742
             + A+ +FF +G + K  N   + L+PK  +  +V +FRPI+CCSV YK+ISKIL +R+ 
Sbjct: 160  VIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQ 219

Query: 741  SVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKF 562
             VL  +++E Q+AFVKGR I DNI L  EL++ Y+RK ISPRC++KIDL+KA++SV W F
Sbjct: 220  GVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPF 279

Query: 561  LEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICL 382
            ++ ++  L F   F++WVM C+T+ S++ ++NG L   F  KKGLRQGDP+SPYLFVIC+
Sbjct: 280  IKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQGDPISPYLFVICM 339

Query: 381  EYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNK 202
            EYL+  L +    + F+FHP+C+ L + H+ F DDL+L SRGD +SV  L E    F   
Sbjct: 340  EYLNICLIQLRKNAAFRFHPRCKRLNLIHVCFVDDLLLFSRGDVDSVSQLFEAFSLFSAA 399

Query: 201  S 199
            S
Sbjct: 400  S 400


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  313 bits (802), Expect = 1e-82
 Identities = 159/349 (45%), Positives = 223/349 (63%)
 Frame = -1

Query: 1050 LTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQ 871
            LT  V+ EE+   L ++ +DKS GPDGF+S+FFK++W I+G +F+ A++ FFA G L K 
Sbjct: 2    LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61

Query: 870  WNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKG 691
             N  I+ALIPK      + D+RPISCC+V YKVISKILA RL  +L   I   Q++FVK 
Sbjct: 62   VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKD 121

Query: 690  RSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISW 511
            R +++N+ L  +L++ Y++  IS RC IKID+ KA DSV W FL   L  + FP +FI W
Sbjct: 122  RLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHW 181

Query: 510  VMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFK 331
            +  C+T+ SFS+ VNG L G FQ  +GLRQG  LSPYLFVIC++ LS+LL K        
Sbjct: 182  IRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIG 241

Query: 330  FHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGI 151
            +HP C+ + +THL+FADDLM+L+ G   S+  ++E  + F   SGL++++ KS IF AG+
Sbjct: 242  YHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGL 301

Query: 150  KEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYI 4
                   + +      G +P RYLG+PL  +RL    +  L  +IR  I
Sbjct: 302  SSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRI 350


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
            putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  309 bits (792), Expect = 1e-81
 Identities = 166/422 (39%), Positives = 249/422 (59%), Gaps = 2/422 (0%)
 Frame = -1

Query: 1278 DKCTKFFHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQ--SQPT 1105
            D  T++FH MA      N I++L  + G+  +S + +      Y+E L   ++   S   
Sbjct: 357  DGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQ 416

Query: 1104 DPAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGN 925
            D   L         +   L A  +DE++ +A   +  +K+ GPDGF              
Sbjct: 417  DDMNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGFP------------- 463

Query: 924  DFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRL 745
               AAV+EFF SG LLKQWN   + LIPK  +    SDFRPISC +  YKVI+++L  RL
Sbjct: 464  -VTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRL 522

Query: 744  SSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWK 565
              +L  +I+ +Q+AF+ GR + +N+ L  E++ GYN + IS R ++K+DL+KAFDSV W+
Sbjct: 523  QKLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWE 582

Query: 564  FLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVIC 385
            F+   L  L  P  FI+W+ +C+++ +F++SVNG   G F+  KGLRQGDPLSPYLFV+ 
Sbjct: 583  FIIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLA 642

Query: 384  LEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGN 205
            +E  S+LL  R D    ++HPK   L I+HL FADD+M+   G  +S+  + E +EDF +
Sbjct: 643  MEVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFAS 702

Query: 204  KSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELT 25
             SGL++N  KS+ F AG+++ + R+ L+     QG +P RYLG+PL   +L++A +E L 
Sbjct: 703  WSGLKVNNDKSHFFCAGLEQAE-RNSLAAYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLL 761

Query: 24   RK 19
             K
Sbjct: 762  EK 763


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  306 bits (784), Expect = 1e-80
 Identities = 152/351 (43%), Positives = 223/351 (63%), Gaps = 2/351 (0%)
 Frame = -1

Query: 1050 LTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAA-VKEFFASGQLLK 874
            L  E T +++ +   ++  +KS GPDGF+  FF+K W ++G++ +AA VKEFF+ G LL 
Sbjct: 269  LCNEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLM 328

Query: 873  QWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVK 694
            + N  I+ L+PK  +  T+SDFRPISCC+ FYK+I+K+LA RL   L  I+  +Q+ F+ 
Sbjct: 329  ELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIP 388

Query: 693  GRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFIS 514
            GR I DNI L QE++  Y++    PRC   +D+ KA D+V W F+   L+  + P   I 
Sbjct: 389  GRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIG 448

Query: 513  WVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSG- 337
            W+  C++S  FS+ VNG L G F  ++GLRQGDPLSPYLFVI +E LS  +++R + S  
Sbjct: 449  WIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPC 508

Query: 336  FKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMA 157
            F++H +C  L ++HL FADDL++   GD NSVR L +   +F + S L+ NV +S IF+A
Sbjct: 509  FRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLA 568

Query: 156  GIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYI 4
            G+    +  +L  +N S G+ P RYLGIPL   +L++     L  +I T I
Sbjct: 569  GVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRI 619


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  305 bits (780), Expect = 3e-80
 Identities = 170/428 (39%), Positives = 243/428 (56%), Gaps = 9/428 (2%)
 Frame = -1

Query: 1260 FHAMAKRNAKKNYISSLTREDGSLTNSLEQVGKELVNYYEQLFGTEHQSQPTD------- 1102
            F    K     N I  +    G+   + + +  E V ++  L      SQP+D       
Sbjct: 642  FERWEKERHLLNAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLS----SQPSDFTGISVD 697

Query: 1101 --PAILANGQSLNREEWDGLTAEVTDEEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVG 928
                IL    SL+ +    L AE+T+ EV+    ++  +KS GPDG++ +FF++TW+++G
Sbjct: 698  ELKGILQYRYSLHEQNL--LVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIG 755

Query: 927  NDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPTVSDFRPISCCSVFYKVISKILATR 748
             +   A+K FF  G L K  N  I+ALIPK T+   + D+RPISCC+V YK ISK+LA R
Sbjct: 756  QEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANR 815

Query: 747  LSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSW 568
            L  +L   I   Q+AF+  R +++N+ L  EL++ Y++  +SPRC +KIDL KAFDSV W
Sbjct: 816  LKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQW 875

Query: 567  KFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVI 388
             FL   L  LD P  FI W+  C+++ SFS+ VN           GLRQG  LSPYLFVI
Sbjct: 876  PFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSLSPYLFVI 924

Query: 387  CLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFG 208
            C+  LS +L K      F +HP+CR + +THL FADD+M+ S G  +S+  +L   +DF 
Sbjct: 925  CMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFA 984

Query: 207  NKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEEL 28
              SGL +++ KS +FMA I       IL+      GS+P RYLG+PL  +R+ +A    L
Sbjct: 985  AFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPL 1044

Query: 27   TRKIRTYI 4
              KIR+ I
Sbjct: 1045 LEKIRSRI 1052