BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00012968
         (588 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...    41   1e-08
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         40   3e-07
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    46   3e-06

>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score = 40.8 bits (94), Expect(3) = 1e-08
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = -1

Query: 567 ILLLTSIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSH---KKQKKANQEEGHESALVAR 397
           ++L++S+PD ++ L TTLL+GK +  L   + ++L SH   K+ K   +    E ALV R
Sbjct: 126 LMLVSSLPDEFEHLETTLLHGKDNVSLDV-VCSALYSHELRKQDKMKTKSTTSEEALVTR 184

Query: 396 GMNRNGRK 373
           G  ++  K
Sbjct: 185 GGQQSQTK 192



 Score = 35.0 bits (79), Expect(3) = 1e-08
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 159 WVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSSGDGSTCR 43
           W+ LDSGC  H+C  RD+F   Q    G +  G+ + C+
Sbjct: 264 WI-LDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCK 301



 Score = 28.5 bits (62), Expect(3) = 1e-08
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -3

Query: 337 KDQGKGVV---CYRYHEEGHFKRNCPRRKK 257
           K +G+ V    C   HE+GH+K++CP+ +K
Sbjct: 199 KSKGRVVAKDECAFCHEKGHWKKDCPKLQK 228


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 40.0 bits (92), Expect(3) = 3e-07
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = -1

Query: 561 LLTSIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKQKKANQEEGHESALVARGMNRN 382
           LL+S+P SY+  V T+LYG+    L   +KASL S + QK    E  +   L+AR   + 
Sbjct: 151 LLSSLPKSYEGFVDTMLYGRTTLTL-EDVKASLSSKEIQKNCELETSNGEGLMARTEKKK 209

Query: 381 GRK 373
            +K
Sbjct: 210 DQK 212



 Score = 32.3 bits (72), Expect(3) = 3e-07
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 162 RWVDLDSGCVMHVCSRRDYFDSLQLKRAGTLSSGDGSTCRIMRLEW*K-SKWVME 1
           +WV +DSGC  H+C  +  F   +    G +  G+ + C I+ + + K S+ +ME
Sbjct: 291 QWV-IDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLME 344



 Score = 26.9 bits (58), Expect(3) = 3e-07
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 313 CYRYHEEGHFKRNCPRRKKXXXXXXXXXDAVIAAEDGDISQSPQVWI 173
           C+   +EGH+ R+C  +KK          AV + +  D  QS  + +
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKSGDAAVASDDGSDGYQSADLLV 282


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 46.2 bits (108), Expect(2) = 3e-06
 Identities = 27/62 (43%), Positives = 35/62 (56%)
 Frame = -1

Query: 567 ILLLTSIPDSYDSLVTTLLYGKRHTGLGAYIKASLLSHKKQKKANQEEGHESALVARGMN 388
           ILLL S+P SYD+L TT+L+GK    L     A LL+ K +KK    E    AL+  G  
Sbjct: 146 ILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKK---PENQGQALITEGRG 202

Query: 387 RN 382
           R+
Sbjct: 203 RS 204



 Score = 30.8 bits (68), Expect(2) = 3e-06
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 313 CYRYHEEGHFKRNCPRRKK 257
           CY  ++ GHFKR+CP  +K
Sbjct: 232 CYNCNQPGHFKRDCPNPRK 250