BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00012473
         (1357 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006467327.1| PREDICTED: uncharacterized protein LOC102625...   103   6e-36
ref|XP_006480463.1| PREDICTED: putative ribonuclease H protein A...    78   9e-30
ref|XP_006476142.1| PREDICTED: uncharacterized protein LOC102616...    77   4e-27
ref|XP_002522452.1| nucleic acid binding protein, putative [Rici...    75   2e-23
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    74   6e-23
ref|XP_006469773.1| PREDICTED: uncharacterized protein LOC102616...    70   8e-21
gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold ...    63   2e-20
gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold ...    63   2e-20
ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617...    96   2e-18
ref|XP_006577722.1| PREDICTED: putative ribonuclease H protein A...    67   9e-16
ref|XP_006489961.1| PREDICTED: uncharacterized protein LOC102608...    89   6e-15
ref|XP_003621136.1| Pentatricopeptide repeat-containing protein ...    63   7e-15
ref|XP_006480206.1| PREDICTED: uncharacterized protein LOC102628...    84   2e-14
ref|XP_002533006.1| RNA binding protein, putative [Ricinus commu...    72   1e-13
gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold ...    58   2e-13
ref|XP_002531249.1| hypothetical protein RCOM_0494170 [Ricinus c...    80   2e-13
ref|XP_006596580.1| PREDICTED: uncharacterized protein LOC102666...    80   2e-12
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    51   6e-12
ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...    76   1e-11
ref|XP_004308707.1| PREDICTED: putative ribonuclease H protein A...    52   2e-11

>ref|XP_006467327.1| PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis]
          Length = 412

 Score =  103 bits (256), Expect(2) = 6e-36
 Identities = 49/119 (41%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQ--VELADWRIKDCDGAVTWSKPKSGAF 903
            NRN+ VW     S   ++N+AG +++QW+ A+Q   ++ D   +   GA+ W +PK G  
Sbjct: 278  NRNNKVWNNTTSSVCQILNSAGQFLYQWQAAKQQVFDVNDDTHRLVHGALCWEQPKFGWV 337

Query: 904  KCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKD 1080
            KCN+D  +F   G+IG  CV+R+S+G FVAA+     GI     A+A+G+REALSW+K+
Sbjct: 338  KCNVDAAVFESQGKIGIGCVIRNSQGGFVAARCVSVAGIFGAREAEALGIREALSWMKE 396



 Score = 76.3 bits (186), Expect(2) = 6e-36
 Identities = 41/107 (38%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W  LW+ KVP K K  +WRA  N LPT + L  KRV +   CSVCN   E+V H  +   
Sbjct: 170 WRKLWNSKVPNKVKNFIWRAAHNVLPTALNLISKRVDVPAMCSVCNAYEETVLHSLVACS 229

Query: 581 FARHCWALASINF--SINGATDFLSCLRTNWSQFVLFDKLMVVMVIC 715
           FA+ CW  +S+ F    +   D+L+ + T  S+    D+    M+IC
Sbjct: 230 FAKSCWTSSSVGFVGYCSNFLDWLAHVFTRCSK----DECNTAMMIC 272


>ref|XP_006480463.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 459

 Score = 77.8 bits (190), Expect(3) = 9e-30
 Identities = 48/130 (36%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFKC 909
            NRN+LVW GK  +   ++N AG                       GAV WS P+ G  KC
Sbjct: 278  NRNNLVWQGKCDTTKQIVNAAGV----------------------GAVAWSPPRVGWLKC 315

Query: 910  NMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKDR-- 1083
            N+D  +F   GR+G   V+RD  G FVAA      G  +P  A+ + +REALS +K    
Sbjct: 316  NIDATVFANEGRVGLGSVIRDESGKFVAALCCHIRGNYSPRDAEVLSIREALSLLKSMKL 375

Query: 1084 FKNSVESDSL 1113
             K  VE+D L
Sbjct: 376  SKVIVETDCL 385



 Score = 77.0 bits (188), Expect(3) = 9e-30
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
 Frame = +2

Query: 359 VKSFHRLIT-----YPDFQWTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGD 523
           VKS +RL+           W  +W L+VP K +  VWRA  N LPT V L+ K V +N  
Sbjct: 151 VKSTYRLLLGEVSDVAGDMWRKIWKLEVPAKVRNFVWRAASNVLPTAVNLRSKHVSLNDL 210

Query: 524 CSVCNNETESVFHLFILFPFARHCWALASINF--SINGATDFLSCLRTNWSQFVLFDKLM 697
           C V N + E+V HL +  PFAR CW  + + F    +   D+L  L  N +     ++  
Sbjct: 211 CLVGNFDKETVLHLLVDCPFARSCWIKSKVGFFGIYSSFKDWLQALFRNCTN----EQCW 266

Query: 698 VVMVICAMWK 727
           + +++C  WK
Sbjct: 267 IAVMVC--WK 274



 Score = 24.3 bits (51), Expect(3) = 9e-30
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 1224 FIRRSADRVTHAIAKATYSVP 1286
            F+ RSA+  +H +AKA  S+P
Sbjct: 422  FVGRSANSASHFVAKAGNSLP 442


>ref|XP_006476142.1| PREDICTED: uncharacterized protein LOC102616098 [Citrus sinensis]
          Length = 510

 Score = 76.6 bits (187), Expect(2) = 4e-27
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 1/118 (0%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWR-IKDCDGAVTWSKPKSGAF 903
            +N+N  VW  +     SV+N AG  + QW+  +++++ D   +    GAV W +P    F
Sbjct: 303  ENKNAKVWKNRKGRLSSVLNLAGQVLFQWKSVRKLQVFDNNSVSSSHGAVCWQRPCVWWF 362

Query: 904  KCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIK 1077
            KCN+D   F  +G I +  V+++S G FV A+            A+A+G+RE LSW+K
Sbjct: 363  KCNVDATTFLSSGTIMYGAVIQNSEGEFVTARSNWLISSFGAREAEAIGVREILSWLK 420



 Score = 73.2 bits (178), Expect(2) = 4e-27
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
 Frame = +2

Query: 350 KSCVKSFHRLITYPDFQ-WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDC 526
           +SC K    L   P    W  +W LKVP K K  +W A +N LPT   L++ +V +   C
Sbjct: 178 RSCYKILAYLSEPPSSNVWQKVWKLKVPAKVKHFIWCAVVNVLPTADNLRRCQVEVPSVC 237

Query: 527 SVCNNETESVFHLFILFPFARHCWALASINFSINGATDFLSCLRTNWSQFVLFDKLMVVM 706
            +CN   E V H  +   FA+ CW L+ I + + G  +F+  L   +S++   D  +  M
Sbjct: 238 PICNAYDEIVAHCLVNCSFAKSCWLLSPIGY-VGGCENFMDWLEGIFSRYSSDDCDLAAM 296

Query: 707 VICAMWK 727
              ++W+
Sbjct: 297 TCWSLWE 303


>ref|XP_002522452.1| nucleic acid binding protein, putative [Ricinus communis]
            gi|223538337|gb|EEF39944.1| nucleic acid binding protein,
            putative [Ricinus communis]
          Length = 483

 Score = 75.5 bits (184), Expect(3) = 2e-23
 Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKD---CDGAVTWSKPKSGA 900
            N ND+VW GK  S  +V + A S++ QW  A++  L D+         G   W KP +G 
Sbjct: 293  NMNDVVWNGKKLSWRAVASRASSFLFQWGKARK--LTDYHQLGRHFAGGDCLWQKPATGK 350

Query: 901  FKCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKD 1080
            +K N+D     + G+ G + V+RD+ G+++       P I  P++A+A  L+EALSWI  
Sbjct: 351  YKLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRPYIANPDVAEAWALKEALSWIHA 410

Query: 1081 RFKNSVESDSLC 1116
            +    V+ ++ C
Sbjct: 411  KGMEEVQIETDC 422



 Score = 57.8 bits (138), Expect(3) = 2e-23
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
 Frame = +2

Query: 350 KSCVKSFHRLITYPDFQ---------WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQK 502
           K  VK  +R +  PDF          W  LW L +  K K  +WRA  N LP R  L  +
Sbjct: 159 KFSVKDVYR-VQQPDFSVLYPSNVVVWRRLWKLNIAAKCKVFMWRALTNRLPVRTNLVMR 217

Query: 503 RVGINGDCSVCNNETESVFHLFILFPFARHCWALASINFSINGATDFLSCLRTNWSQFVL 682
           +V  +  C  C ++ E++ H+ +L       W   ++   ++  ++ L   R   S F  
Sbjct: 218 KVTEDSSCPCCVSQPETIMHILVLCDVTTQSWKYVNLYQFLSQVSNLLEGAR---SVFEH 274

Query: 683 FDKLMVVMVICAMW 724
           FD  +V   +   W
Sbjct: 275 FDDSIVASFVVLWW 288



 Score = 24.6 bits (52), Expect(3) = 2e-23
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 1188 D*LKELP*VSCVFIRRSADRVTHAIAKATYS 1280
            D L+ L   + VF+  SA+ V H I+KAT S
Sbjct: 448  DLLRVLNRCNLVFVYGSANTVAHMISKATCS 478


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 73.6 bits (179), Expect(2) = 6e-23
 Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
 Frame = +2

Query: 392  DFQWTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFI 571
            D  W  LW+LKVPPK K  +WR+  N LPTRV L+ + V     C++C NE E   HLF 
Sbjct: 1414 DGNWVLLWNLKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFF 1473

Query: 572  LFPFARHCWALASINFSINGATDF-LSCLRTNWSQFVLFDKLMVVMVICAMW 724
                +R CW    +   +       LS   T +      D    V+  C MW
Sbjct: 1474 YCTKSRQCWQQLGLWSKVQQKAQLNLSFGVTMFEILQELDSSQRVIWACVMW 1525



 Score = 62.4 bits (150), Expect(2) = 6e-23
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            K RND +W  +  +  +V +   + +  W+ AQ +               W KP  G FK
Sbjct: 1529 KQRNDCIWRNEVMTTAAVRDRGLNLLTGWQNAQDI---------------WRKPDEGHFK 1573

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRG-ECPGIETPELAKAMGLREALSWIKDR 1083
            CN+D   F ++ R+G    +RD  G  V A+       ++ PE  +A+GL  A+ W K++
Sbjct: 1574 CNVDAAFFKESNRVGIGICIRDDSGRLVKARTSWSTLLLDVPE-GEAIGLLYAIRWAKEQ 1632

Query: 1084 FKNSV 1098
              N++
Sbjct: 1633 NLNNI 1637


>ref|XP_006469773.1| PREDICTED: uncharacterized protein LOC102616843 [Citrus sinensis]
          Length = 977

 Score = 70.1 bits (170), Expect(2) = 8e-21
 Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +2

Query: 344  ATKSCVKSFHRLITYPDFQ-WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGING 520
            + +SC K  H L   P    W  LW+L V  K K  VWRA  N LPT V L  KRV I  
Sbjct: 779  SVRSCYKYLHSLTPGPFIGVWRKLWNLNVAHKVKNFVWRAATNVLPTAVNLISKRVNIPP 838

Query: 521  DCSVCNNETESVFHLFILFPFARHCWALASINF 619
             C+VC    E+  H  +    A+ CW  +S+ F
Sbjct: 839  TCAVCLASDETALHSLVECNVAKACWISSSVGF 871



 Score = 58.5 bits (140), Expect(2) = 8e-21
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVEL-ADWRI-KDCDGAVTWSKPKSGAF 903
            NRND VW  K  S   V+N+AG  ++QW++A++ +  AD  + K   GA+ W +PK G  
Sbjct: 907  NRNDKVWNNKTGSVNQVLNSAGQLLYQWQVAKKQQFYADADVHKLVYGAICWERPKFGWV 966

Query: 904  KCNMDGVIF 930
            KCN+D  +F
Sbjct: 967  KCNVDAAMF 975


>gb|ABD32189.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 612

 Score = 62.8 bits (151), Expect(3) = 2e-20
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W+++W LKVPPK K  +WR     LPTR  L+ K V     C  C+  +E V HLF +  
Sbjct: 261 WSDIWRLKVPPKIKNFMWRVCRGVLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCT 320

Query: 581 FARHCWALASINFSINGAT---DFLSCLRTNWSQFVLFDKLMVVMVICAMWKK 730
           F    W L+ +   I  A    D  S +  +  Q    ++  + + + ++WK+
Sbjct: 321 FDVQVWQLSDLWSEIQQAVIHFDTASAVIFDLLQRFTLEQSQIFVTMWSLWKR 373



 Score = 58.9 bits (141), Expect(3) = 2e-20
 Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWEL----------------------AQQ--VE 834
            K RN  VW  K  S    ++ A   + +W+L                      AQQ  V 
Sbjct: 372  KRRNLKVWENKNESCAMTVDRARVMMEEWQLATATRSAPTHQHTHLQNPSAATAQQPVVH 431

Query: 835  LADWRIKDCDGA-------VTWSKPKSGAFKCNMDGVIFHQTGRIGFACVVRDSRGMFVA 993
            L    +     A       ++W +P  G FKCN+D        RIG    VRD  G +V 
Sbjct: 432  LQQSHVASAVSAQQSLVPSISWERPSRGRFKCNVDAGFSTSKNRIGIGICVRDDDGAYVL 491

Query: 994  AKRGECPGIETPELAKAMGLREALSWIKD 1080
            AK      +    + +A+GL  AL W+ D
Sbjct: 492  AKTISFDVVHPVRVGEALGLYHALEWLSD 520



 Score = 25.4 bits (54), Expect(3) = 2e-20
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 280 RVTPDAFIDHNQIDEVYTVKRSYQILCEELPSTNYLSR 393
           +V  D  I   + D  Y+V+ +Y +  EEL  T++L R
Sbjct: 220 KVQHDRIIWKAENDGKYSVRSAYTLCVEELIDTSFLRR 257


>gb|ABN06084.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 519

 Score = 62.8 bits (151), Expect(3) = 2e-20
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W+++W LKVPPK K  +WR     LPTR  L+ K V     C  C+  +E V HLF +  
Sbjct: 168 WSDIWRLKVPPKIKNFMWRVCRGVLPTRNKLRDKGVQCPEACVNCSTTSEDVKHLFCVCT 227

Query: 581 FARHCWALASINFSINGAT---DFLSCLRTNWSQFVLFDKLMVVMVICAMWKK 730
           F    W L+ +   I  A    D  S +  +  Q    ++  + + + ++WK+
Sbjct: 228 FDVQVWQLSDLWSEIQQAVIHFDTASAVIFDLLQRFTLEQSQIFVTMWSLWKR 280



 Score = 58.9 bits (141), Expect(3) = 2e-20
 Identities = 41/149 (27%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWEL----------------------AQQ--VE 834
            K RN  VW  K  S    ++ A   + +W+L                      AQQ  V 
Sbjct: 279  KRRNLKVWENKNESCAMTVDRARVMMEEWQLATATRSAPTHQHTHLQNPSAATAQQPVVH 338

Query: 835  LADWRIKDCDGA-------VTWSKPKSGAFKCNMDGVIFHQTGRIGFACVVRDSRGMFVA 993
            L    +     A       ++W +P  G FKCN+D        RIG    VRD  G +V 
Sbjct: 339  LQQSHVASAVSAQQSLVPSISWERPSRGRFKCNVDAGFSTSKNRIGIGICVRDDDGAYVL 398

Query: 994  AKRGECPGIETPELAKAMGLREALSWIKD 1080
            AK      +    + +A+GL  AL W+ D
Sbjct: 399  AKTISFDVVHPVRVGEALGLYHALEWLSD 427



 Score = 25.4 bits (54), Expect(3) = 2e-20
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 280 RVTPDAFIDHNQIDEVYTVKRSYQILCEELPSTNYLSR 393
           +V  D  I   + D  Y+V+ +Y +  EEL  T++L R
Sbjct: 127 KVQHDRIIWKAENDGKYSVRSAYTLCVEELIDTSFLRR 164


>ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
          Length = 440

 Score = 95.5 bits (236), Expect(2) = 2e-18
 Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCD-GAVTWSKPKSGAF 903
            +NRND+VW GK      ++N+AG ++ QW+L ++ +    +      GA+ W  P +G  
Sbjct: 230  QNRNDMVWRGKTSGVQQLLNSAGHFLFQWQLVRKQQFLFSQPSPIGHGAICWEPPVAGRL 289

Query: 904  KCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKDR 1083
            KCN+D  +F   G IGF  V+RDS   F+AA+    PG  +   A+A+G+REALSWIK  
Sbjct: 290  KCNVDVALFAFRGYIGFGNVIRDSNCAFMAARCCSIPGRFSARDAEALGVREALSWIKQL 349

Query: 1084 FKNSVESDSLC 1116
              ++V  +  C
Sbjct: 350  QLSNVTIEMDC 360



 Score = 25.4 bits (54), Expect(2) = 2e-18
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 1212 VSCVFIRRSADRVTHAIAKATYSV 1283
            VS  F+RRSA+ V H +A+A  S+
Sbjct: 394  VSFSFVRRSANSVAHYVAQAGNSL 417



 Score = 80.5 bits (197), Expect = 2e-12
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W  LW L+VP K K  +WRA  + LPT   L +K V +   C  C+  +ES+ H+ +  P
Sbjct: 123 WNQLWRLEVPSKVKHFMWRALTDVLPTTENLLKKYVEVPPACITCHASSESICHILLQCP 182

Query: 581 FARHCWALASINFSINGATDFLSCLRTNWSQFVLFDKLMVVMVICAMWK-KIETTWYGLV 757
           FAR CW  +SI F  +G ++ L  L   ++++ L    + VM+  ++W+ + +  W G  
Sbjct: 183 FARTCWMTSSIGFFGDG-SNLLLWLEALFNRYSLEQTQLAVMICWSLWQNRNDMVWRGKT 241

Query: 758 RVVQRFL 778
             VQ+ L
Sbjct: 242 SGVQQLL 248


>ref|XP_006577722.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 249

 Score = 67.0 bits (162), Expect(2) = 9e-16
 Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
 Frame = +2

Query: 398 QWTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILF 577
           +W +LW L+VP K K  +WRA   CLPTR+ L+ K V   G C +C N  E+ +H  +  
Sbjct: 15  RWKDLWKLQVPNKVKVFLWRAVRGCLPTRLRLQTKGVVCTGICPLCLNNLENEWHCLVAC 74

Query: 578 PFARHCWALAS----INFSINGATDFLSCLRTNWSQFVLFDKLMVVMVICAMW 724
           P    CW LA     I   ++ A  F   +   +       K  +  V+  MW
Sbjct: 75  PSNLVCWKLAGFWNVIRVQVDSADSFDDLI---FRLLASISKAKISQVVMLMW 124



 Score = 44.7 bits (104), Expect(2) = 9e-16
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
 Frame = +1

Query: 736  NDLVWTGKGRSAISVINTAGSYVHQWELA--QQVELADWRIKDCDGAVTWSKPKSGAFKC 909
            N  VW    RS    +  A + +  W     ++V +   +I        W KP     KC
Sbjct: 131  NGKVWEDADRSPSVTVRRATNCLTDWGKCHRRRVSVPQRQISPPQ----WVKPPLVFAKC 186

Query: 910  NMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMG 1050
            N+D  +F    R G    +RDS G F+ AK     G+  P  A+A+G
Sbjct: 187  NLDAAVFGNQRRFGLGMCLRDSLGRFIIAKSVLVEGMLQPVEAEALG 233


>ref|XP_006489961.1| PREDICTED: uncharacterized protein LOC102608276 [Citrus sinensis]
          Length = 190

 Score = 88.6 bits (218), Expect = 6e-15
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWE-LAQQVELADW-RIKDCDGAVTWSKPKSGAF 903
            +RND VW  +      ++N+AG  ++QW+ L +Q    D        GAV W +P  G  
Sbjct: 32   HRNDKVWNNRSGRVYQILNSAGHLLYQWQSLRKQAMFTDVDESSSVHGAVCWKRPHVGWV 91

Query: 904  KCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIK 1077
            KCN+D  +F     +G  CVVR+S G+F+ AK     G      A+A G+REALSW+K
Sbjct: 92   KCNVDAAVFSSQAMVGLGCVVRNSEGIFLTAKCDRFLGSFGAREAEAFGVREALSWLK 149


>ref|XP_003621136.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355496151|gb|AES77354.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 821

 Score = 63.2 bits (152), Expect(3) = 7e-15
 Identities = 30/84 (35%), Positives = 43/84 (51%)
 Frame = +2

Query: 398 QWTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILF 577
           +W+ +W LKVPPK K  VWR    CLPTR+ L+ K V    +C  C++  E +  +  + 
Sbjct: 547 EWSAIWKLKVPPKVKNLVWRMCRGCLPTRIRLQDKGVNCPTNCESCDSANEDMADVMFVC 606

Query: 578 PFARHCWALASINFSINGATDFLS 649
           PFA     +  +      AT F S
Sbjct: 607 PFAVQLLRMLLVELKQQLATVFWS 630



 Score = 41.6 bits (96), Expect(3) = 7e-15
 Identities = 32/125 (25%), Positives = 50/125 (40%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            K RN L+W  K  S   V++ A              L + R+  C          +   K
Sbjct: 633  KRRNLLIWENKNESCAMVVDRARV------------LLERRLAFCQ--------HNRKLK 672

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKDRF 1086
            CN+D        R G   + RD  G FV AK      +   ++ +A+GL  AL W+ D  
Sbjct: 673  CNIDASFSISQNRTGIG-LCRDGEGNFVLAKTMNFAVVHAADVREALGLYHALEWLWDMQ 731

Query: 1087 KNSVE 1101
             ++++
Sbjct: 732  LDNID 736



 Score = 23.5 bits (49), Expect(3) = 7e-15
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 328 YTVKRSYQILCEELPSTNYLSR 393
           Y+V+  Y++  EE+  T+YL R
Sbjct: 523 YSVRSVYRLCVEEIIDTSYLRR 544


>ref|XP_006480206.1| PREDICTED: uncharacterized protein LOC102628543 [Citrus sinensis]
          Length = 163

 Score = 83.6 bits (205), Expect(2) = 2e-14
 Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQ--VELADWRIKDCDGAVTWSKPKSGAF 903
            NRN+  W     S   ++N+AG +++QW+ A+Q   ++ D   K   GA+ W KPK G  
Sbjct: 54   NRNNKAWNNTASSVCQILNSAGQFLYQWQAAKQQVFDINDDTHKLVHGALCWEKPKFGWV 113

Query: 904  KCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGI 1020
            KCN+D  +F   G+IG  CV+R+S+G F+AA+   C G+
Sbjct: 114  KCNVDAAVFTPQGKIGIGCVIRNSQGGFLAAR---CVGV 149



 Score = 23.9 bits (50), Expect(2) = 2e-14
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 581 FARHCWALASINFSINGAT--DFLSCLRTNWSQFVLFDKLMVVMVIC 715
           FA+ CW  +S+ F    +T  D+L+ + T  S+    D+  + M+IC
Sbjct: 6   FAKSCWISSSVGFVGYCSTFLDWLAHVFTRCSK----DECNIAMMIC 48


>ref|XP_002533006.1| RNA binding protein, putative [Ricinus communis]
            gi|223527217|gb|EEF29381.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 197

 Score = 72.4 bits (176), Expect(2) = 1e-13
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
 Frame = +1

Query: 730  NRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGA-----VTWSKPKS 894
            +RN++VW  K +    +++ A +Y+H+W +AQQ         D  G        W KPK+
Sbjct: 83   HRNEVVWYSKRKQPTQIVDGAVTYLHKWLIAQQTNPPS---PDNSGLFHHNLAKWKKPKT 139

Query: 895  GAFKCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIE-TPELAKAMGLREAL 1065
            G  KCN+D  IF+Q G IG  CV+R++ G F+ A+       +  P+LA+    RE +
Sbjct: 140  GWPKCNIDAAIFNQQGMIGADCVLRNTEGAFIGARINSFVQSDLNPKLAEDPSFREQI 197



 Score = 32.0 bits (71), Expect(2) = 1e-13
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +2

Query: 500 KRVGINGDCSVCNNETESVFHLFILFPFARHCWALASINFSINGATDFLSCLRTNWSQFV 679
           KRV +   C +C+   ES+++  I   F +  W ++ +    N        L+  +++F 
Sbjct: 7   KRVNVQDLCPLCSKPGESIYYALIDCSFVKEVWVISVLISRGNRNGSICDWLQEMFTKFE 66

Query: 680 LFDKLMVVMVICAMW-KKIETTWY 748
                 + +++  +W  + E  WY
Sbjct: 67  KSTWGCIAVLVWNLWIHRNEVVWY 90


>gb|ABN08723.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 355

 Score = 57.8 bits (138), Expect(2) = 2e-13
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W N+W+L +P + +  +WR   NCLPTRV L  + +     C +  N  E   HLF +  
Sbjct: 115 WMNIWNLNIPHRVRAFLWRLAHNCLPTRVNLNARGIQCEESCVMFENFAECHTHLFFVCA 174

Query: 581 FARHCWALASINFSING----ATDFLSCLRTNWSQFVLFDKLMVVMVICAMWK 727
            A  CW    ++  ++     A +F + L     +     +    M++ ++WK
Sbjct: 175 KAMDCWKNIGLHVVLSELLPLANNFTTLLFDFMHRLCSQQQQAAGMLLWSLWK 227



 Score = 46.2 bits (108), Expect(2) = 2e-13
 Identities = 30/113 (26%), Positives = 48/113 (42%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            K+RN  +W     +    I+ A   +H+W   Q    A  +  + +  ++W KP  G  K
Sbjct: 227  KSRNIKLWDSTDTTTAITISRAKDTLHEWSCMQS---AKTQPINPNHHISWVKPTGGMIK 283

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREAL 1065
            CNMD  IF      G+    R+S    +  K        +   A+A+ L EA+
Sbjct: 284  CNMDAAIFQNNVAAGYGICCRNSEDELLLGKSAIIHSSLSVLEAEAIVLLEAM 336


>ref|XP_002531249.1| hypothetical protein RCOM_0494170 [Ricinus communis]
            gi|223529168|gb|EEF31146.1| hypothetical protein
            RCOM_0494170 [Ricinus communis]
          Length = 329

 Score = 80.1 bits (196), Expect(2) = 2e-13
 Identities = 42/124 (33%), Positives = 66/124 (53%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            K RN  +W G+ +     +  A S++  W  A  ++      +     +T   P+ G  K
Sbjct: 118  KQRNLCLWEGQLQQPAQTVFCALSFLCDWASACSLQRNGNEARVMLEVLTCCPPQPGFVK 177

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKDRF 1086
            CN+DG +F  +GR GF  V+RDS G FV    G  PG+   +LA+A+GLREA+ W+    
Sbjct: 178  CNVDGAVFTASGRSGFGMVIRDSAGSFVMGADGSSPGLFNVKLAEAIGLREAVQWVLSLG 237

Query: 1087 KNSV 1098
            +++V
Sbjct: 238  RSNV 241



 Score = 23.5 bits (49), Expect(2) = 2e-13
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 1215 SCVFIRRSADRVTHAIAKATY 1277
            S  FIR+ A+ V H++A+A++
Sbjct: 282  SVQFIRKQANLVAHSLARASH 302


>ref|XP_006596580.1| PREDICTED: uncharacterized protein LOC102666294 [Glycine max]
          Length = 216

 Score = 80.1 bits (196), Expect = 2e-12
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
 Frame = +1

Query: 700  CNGY---LRYVEKNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGA 870
            CN +   L  + + +ND  W  + +     I  A  ++ +W+ A+Q +     ++  D  
Sbjct: 43   CNKFATGLWCIWRQQNDKFWRNQVQPTQITIQQAFQHLEEWKDARQQQSQSHVMQILDNQ 102

Query: 871  VTWSKPKSGAFKCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMG 1050
              W KP  G  KCN+D  IF+Q  + G    +RD  G F+ AK     G+  P +A+A G
Sbjct: 103  CEWKKPSFGYLKCNVDATIFNQDQQFGNGMCIRDHNGQFIQAKTW-FQGVSDPTIAEACG 161

Query: 1051 LREALSWIKDRFKNSVESD 1107
            L +A+ W+K+ + N++ S+
Sbjct: 162  LYQAMEWLKESYNNNIISE 180


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 50.8 bits (120), Expect(2) = 6e-12
 Identities = 22/90 (24%), Positives = 47/90 (52%)
 Frame = +2

Query: 410  LWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFPFAR 589
            +W+L   PK +  +W+A    +P    L+ + +  +  C +C+ E E++ H+    P AR
Sbjct: 1045 IWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLAR 1104

Query: 590  HCWALASINFSINGATDFLSCLRTNWSQFV 679
              WA+  ++   +  ++F + + TN S+ +
Sbjct: 1105 QVWAITHLS---SAGSEFSNSVYTNMSRLI 1131



 Score = 47.8 bits (112), Expect(2) = 6e-12
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
 Frame = +1

Query: 688  QANGCNGYLRYVE--------KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQ-QVELA 840
            Q N    +LR+V         KNRN L++ GKG    ++++ A    H+W  AQ  ++  
Sbjct: 1135 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1194

Query: 841  DWRIKDCDGAVTWSKPKSGAFKCNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGI 1020
            +  +K       W  P  G  KCN+      Q    G + VVRDS+G  +   R     +
Sbjct: 1195 EKHLK----ITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEV 1250

Query: 1021 ETPELAKAMGLREAL 1065
             +P  AK      AL
Sbjct: 1251 HSPYSAKIRSWEWAL 1265


>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
            gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
            [Medicago truncatula]
          Length = 547

 Score = 76.3 bits (186), Expect(2) = 1e-11
 Identities = 40/130 (30%), Positives = 64/130 (49%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            + RND VW G+ + +   +  A   + QW+ A+       +    D  + W  P +G  K
Sbjct: 8    RRRNDKVWDGQLQPSNIAVQLARELLFQWQAARNSATTQVQQSPQD-TIAWQPPAAGFLK 66

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIKDRF 1086
            CN+D  IF +  R G    VRD RG F+ A      G   P+ A+A+GLR+A+ W+    
Sbjct: 67   CNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQEAEAVGLRDAILWLGQLE 126

Query: 1087 KNSVESDSLC 1116
             ++V+ +  C
Sbjct: 127  LSNVQLELDC 136



 Score = 21.2 bits (43), Expect(2) = 1e-11
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 1224 FIRRSADRVTHAIAKATYSVP 1286
            F+RR A+ V H+ A+ +   P
Sbjct: 174  FVRRQANVVAHSFARVSIFQP 194


>ref|XP_004308707.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 498

 Score = 52.4 bits (124), Expect(2) = 2e-11
 Identities = 30/117 (25%), Positives = 53/117 (45%)
 Frame = +1

Query: 727  KNRNDLVWTGKGRSAISVINTAGSYVHQWELAQQVELADWRIKDCDGAVTWSKPKSGAFK 906
            +NRN+++W+ K ++A  +I    S+ H++     +     +       V W  P     K
Sbjct: 288  RNRNNMLWSDKQQTAQEIICGTMSWYHEFTT---INYPQQKPSKTSQRVKWFPPAVDHLK 344

Query: 907  CNMDGVIFHQTGRIGFACVVRDSRGMFVAAKRGECPGIETPELAKAMGLREALSWIK 1077
             N+DG         G   ++RD++G+ VAA      GI +   A+   +R  L W+K
Sbjct: 345  LNVDGAFMPNETEGGVGGILRDNQGIVVAAFTKHISGINSANQAELKAIRAGLIWLK 401



 Score = 44.3 bits (103), Expect(2) = 2e-11
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
 Frame = +2

Query: 401 WTNLWSLKVPPKAKRTVWRAGLNCLPTRVCLKQKRVGINGDCSVCNNETESVFHLFILFP 580
           W  LW  +VP K     WRA  + LPTR  L  K       C  C +  E+  HL    P
Sbjct: 178 WKKLWKARVPGKVMHCAWRACHDLLPTRAKLVTKGYEGTLKCLSCPHPCETTAHLVCACP 237

Query: 581 FARHCWALASINFSINGATDFLSCLRTNWSQFVL----------FDKLMVVMVICAMWK 727
            A+     + +N ++  ++ F      N+ +++L          F KL+  M+I  +W+
Sbjct: 238 IAQTILLGSHLNITVLMSSIF------NFKEWMLEQATSLSDDKFQKLL--MIIWGLWR 288