BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00012018
         (714 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         314   2e-83
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   314   2e-83
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   314   2e-83
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         313   3e-83
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   313   4e-83
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   313   4e-83
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   313   4e-83
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   313   4e-83
gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subc...   313   5e-83
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-...   313   5e-83
emb|CAH65951.1| H0716A07.9 [Oryza sativa Indica Group]                313   5e-83
gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subc...   313   5e-83
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   312   6e-83
gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subc...   312   6e-83
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   312   6e-83
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]         312   6e-83
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi...   312   6e-83
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   312   6e-83
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   312   6e-83
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc...   312   6e-83

>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  314 bits (805), Expect = 2e-83
 Identities = 146/237 (61%), Positives = 187/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  +IS GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSKNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+NI VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+NI VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNIEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  313 bits (803), Expect = 3e-83
 Identities = 146/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  +IS GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++   ++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGFHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  313 bits (802), Expect = 4e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRYGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  313 bits (802), Expect = 4e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  313 bits (802), Expect = 4e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  313 bits (802), Expect = 4e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLSLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1336

 Score =  313 bits (801), Expect = 5e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 713

 Score =  313 bits (801), Expect = 5e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 336  LKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 395

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 396  EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 455

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 456  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 515

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 516  RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 572


>emb|CAH65951.1| H0716A07.9 [Oryza sativa Indica Group]
          Length = 1216

 Score =  313 bits (801), Expect = 5e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 839  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 898

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL +K+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 899  EVKSFLSQNFDMKDLGVADVILNLKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 958

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 959  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1018

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SWKS
Sbjct: 1019 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWKS 1075


>gb|ABA92101.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 923

 Score =  313 bits (801), Expect = 5e-83
 Identities = 146/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 592  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 651

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 652  EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKMLNRFGYIDSKPSPTPY 711

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 712  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 771

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGTI+  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 772  RVMRYLKGTIELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 828


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 736  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 795

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 796  EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 855

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 856  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 915

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 916  RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 972


>gb|ABA93525.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1235

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 876  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 935

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 936  EVKSFLSQNFDMKDLGVADVILNIKLIRGENEITLLQSHYVEKILNRFGYIDSKPSPTPY 995

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 996  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1055

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1056 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1112


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
            gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 943  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 1002

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 1003 EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 1062

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 1063 DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 1122

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 1123 RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 1179


>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 764

 Score =  312 bits (800), Expect = 6e-83
 Identities = 145/237 (61%), Positives = 186/237 (78%)
 Frame = +3

Query: 3    LKQAPMQWHEKFDSVIISNGFYINKGDKCVYIKVVDDTCVILCLYVDDILIFGSNIHVIN 182
            LKQAP QWHEKFD  + S GF +N+ DKCVY +      VILCLYVDDILIFG+N+ VIN
Sbjct: 367  LKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVIN 426

Query: 183  DTKKFLSNHFDMKDLGPVDVILGIKIIRNKNSISLSQSHYIEKLLNKFNYSNVNPVSTPY 362
            + K FLS +FDMKDLG  DVIL IK+IR +N I+L QSHY+EK+LN+F Y +  P  TPY
Sbjct: 427  EVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNRFGYIDSKPSPTPY 486

Query: 363  DPSFKLRKNKGASVSQHKYSQIIGSLLHLMNHTRPDIAYAVGRLARYTHSPNTSHWDALE 542
            DPS  LRKNK  + +Q +YSQIIGSL++L + TRPDI++AV +L+R+T +P   HW ALE
Sbjct: 487  DPSLLLRKNKRIARNQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALE 546

Query: 543  RLFKYLKGTIDYAINFTGFPDVLEGYSDANWITDSEETKSTSGYVFTLAGGAISWKS 713
            R+ +YLKGT++  +++TG+P VLEGYSD+NWI+D +E K+TSGYVFTL GGA+SW+S
Sbjct: 547  RVMRYLKGTVELGLHYTGYPAVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRS 603