BLASTX nr result
ID: Rehmannia25_contig00011777
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00011777
(926 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [... 472 e-156
ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum ind... 473 e-156
gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum... 473 e-155
ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]... 469 e-155
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [... 469 e-154
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu... 461 e-153
gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta] 454 e-151
ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocast... 457 e-151
ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [... 456 e-150
gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii] 453 e-150
ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [... 456 e-150
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea... 451 e-150
ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna... 456 e-149
ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum... 455 e-149
gb|ADD31212.1| RNA polymerase alpha subunit protein [Aucuba japo... 452 e-149
ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 456 e-149
ref|YP_008964898.1| RNA polymerase alpha subunit (chloroplast) [... 463 e-149
ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana u... 452 e-149
ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [... 452 e-149
ref|YP_398896.1| RNA polymerase alpha subunit [Nicotiana tomento... 451 e-149
>ref|YP_008815969.1| RNA polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis] gi|557136896|emb|CDI43950.1| RNA
polymerase alpha subunit (chloroplast) [Lindenbergia
philippensis]
Length = 336
Score = 472 bits (1215), Expect(2) = e-156
Identities = 229/241 (95%), Positives = 234/241 (97%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRR LLGEIEGT ITRVK ENV HEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGTCITRVKSENVSHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGTCDASICV GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVMGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYP+DAVFMPVRN+NHSIHSYGNGNE
Sbjct: 135 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPIDAVFMPVRNMNHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQ VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQRTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 108 bits (271), Expect(2) = e-156
Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +3
Query: 705 PLLLFT-RNWINSEKTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLM 881
PL FT + ++ KKI LKSIFIDQ ELSPRVYNCLKRSN YTLLDLLNNSQEDLM
Sbjct: 247 PLSPFTFHDKLDKLSKNKKITLKSIFIDQSELSPRVYNCLKRSNIYTLLDLLNNSQEDLM 306
Query: 882 KIKHFRLEDVKQLLG 926
KI+HFRLEDVKQ+LG
Sbjct: 307 KIEHFRLEDVKQILG 321
>ref|YP_004935698.1| rpoA gene product (chloroplast) [Sesamum indicum]
gi|347448327|gb|AEO92738.1| RNA polymerase alpha subunit
(chloroplast) [Sesamum indicum]
gi|496538633|gb|AGL45368.1| RpoA (chloroplast) [Sesamum
indicum]
Length = 337
Score = 473 bits (1216), Expect(2) = e-156
Identities = 229/241 (95%), Positives = 235/241 (97%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK ENVPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSENVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGTCDASICV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGLEIERNRGYLIKMP NFQDGSYP+DAVFMPVRNVNHSIHSYGNGNE
Sbjct: 135 HIASLTEPIHFCIGLEIERNRGYLIKMPQNFQDGSYPIDAVFMPVRNVNHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQ VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQRTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 108 bits (269), Expect(2) = e-156
Identities = 53/61 (86%), Positives = 56/61 (91%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K K KIALKSIFIDQ ELSPRVYNCLKRSN YTLLDLLNNSQEDLMKI+HFRLEDVK++
Sbjct: 262 KNKNKIALKSIFIDQSELSPRVYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRLEDVKEIW 321
Query: 924 G 926
G
Sbjct: 322 G 322
>gb|ADD31211.1| RNA polymerase alpha subunit protein [Antirrhinum majus]
Length = 336
Score = 473 bits (1216), Expect(2) = e-155
Identities = 226/241 (93%), Positives = 235/241 (97%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK EN+PHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSENIPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLR+NLYGTCDASIC RGPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRTNLYGTCDASICARGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPIN CIGLEIERNRGYLIKMPHNFQDGSY +DAVFMPVRNVNHSIHSYGNGNE
Sbjct: 135 HIASLTEPINFCIGLEIERNRGYLIKMPHNFQDGSYSIDAVFMPVRNVNHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPL+DNQH +PLSPF+FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLDDNQHTIPLSPFSFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 104 bits (259), Expect(2) = e-155
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
+ KKIALKSIFIDQ ELSPR YNCLKRSN YTL DLLNNSQEDLMKI+HFRL+DVK++L
Sbjct: 261 RKNKKIALKSIFIDQSELSPRAYNCLKRSNIYTLFDLLNNSQEDLMKIEHFRLKDVKEIL 320
Query: 924 G 926
G
Sbjct: 321 G 321
>ref|YP_008964066.1| RNA polymerase subunit alpha [Ajuga reptans]
gi|558697182|gb|AHA84937.1| RNA polymerase subunit alpha
[Ajuga reptans]
Length = 337
Score = 469 bits (1206), Expect(2) = e-155
Identities = 227/241 (94%), Positives = 234/241 (97%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK ENVPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSENVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEI+MNLKEIVLRSNLYGT DASICVRGPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEIIMNLKEIVLRSNLYGTFDASICVRGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPINLCIGL+IERNRGYLIKMPH FQDGSYP+DAVFMPVRNVNHSIHSYGNGNE
Sbjct: 135 HIASLTEPINLCIGLKIERNRGYLIKMPHKFQDGSYPIDAVFMPVRNVNHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSL PKEALHEASRNLIDLFIPFL+KEEENLPLEDNQH PLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLNPKEALHEASRNLIDLFIPFLYKEEENLPLEDNQHTAPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 106 bits (264), Expect(2) = e-155
Identities = 52/61 (85%), Positives = 57/61 (93%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIAL+SIFIDQ ELSP+VYNCLKRSN YTLLDLLNNSQEDLMKI+ FRL+DVKQ+L
Sbjct: 262 KNKKKIALQSIFIDQSELSPKVYNCLKRSNIYTLLDLLNNSQEDLMKIEDFRLQDVKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
(chloroplast) [Olea europaea]
gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
[Olea europaea] gi|328795464|emb|CBR30346.1| RNA
polymerase alpha subunit [Olea europaea subsp. europaea]
gi|334084432|emb|CBR23861.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334084518|emb|CBR24655.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334084604|emb|CBR30439.1| RNA polymerase alpha
subunit [Olea europaea subsp. europaea]
gi|334084690|emb|CBS29383.1| RNA polymerase alpha
subunit [Olea woodiana subsp. woodiana]
gi|334084895|emb|CBS29273.1| RNA polymerase alpha
subunit [Olea europaea subsp. maroccana]
gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|334085067|emb|CBR23770.1| RNA polymerase alpha
subunit [Olea europaea subsp. cuspidata]
gi|510934435|emb|CCQ09133.1| RNA polymerase alpha
subunit (chloroplast) [Olea europaea subsp. europaea]
Length = 337
Score = 469 bits (1206), Expect(2) = e-154
Identities = 226/241 (93%), Positives = 233/241 (96%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK ENVPHEY
Sbjct: 15 WKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSENVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+LCIGL+I+RNRGYLIKMPHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIGLQIKRNRGYLIKMPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEA RNLIDLFIPFLHKEEENLPLEDNQH VPLSP TFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEACRNLIDLFIPFLHKEEENLPLEDNQHTVPLSPLTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 104 bits (260), Expect(2) = e-154
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ E SPRVYNCLKRSN YTLLDLLNNS EDLMKI+H RLED+KQ+L
Sbjct: 262 KNKKKIALKSIFIDQSEFSPRVYNCLKRSNIYTLLDLLNNSPEDLMKIEHLRLEDIKQIL 321
>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
Length = 339
Score = 461 bits (1185), Expect(2) = e-153
Identities = 225/243 (92%), Positives = 234/243 (96%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFEN--VPH 175
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVK E+ VPH
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKSESEKVPH 74
Query: 176 EYSTITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDN 355
EYSTI+GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD+ILPPYVEI+DN
Sbjct: 75 EYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIILPPYVEIVDN 134
Query: 356 TQHIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNG 535
TQHIASLTEPI+LCIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNG
Sbjct: 135 TQHIASLTEPIDLCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNG 194
Query: 536 NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFT 715
NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN+ LEDNQH VPLSPF
Sbjct: 195 NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENVHLEDNQHTVPLSPFI 254
Query: 716 FHE 724
FH+
Sbjct: 255 FHD 257
Score = 110 bits (274), Expect(2) = e-153
Identities = 53/61 (86%), Positives = 57/61 (93%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL PR+YNCLKRSN YTLLDLLNNSQEDLMKI+HFR+EDVKQ+L
Sbjct: 264 KKKKKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQIL 323
Query: 924 G 926
G
Sbjct: 324 G 324
>gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]
Length = 337
Score = 454 bits (1168), Expect(2) = e-151
Identities = 218/241 (90%), Positives = 227/241 (94%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITR KFE +PHEY
Sbjct: 15 WKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKFEKIPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVT QD+ILPPYVEI+DNTQ
Sbjct: 75 STIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+LCIGL+IERNRGYLIK P+NFQDGSYP+DAVFMPVRN NHSIHSY NGNE
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYRNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENL LEDNQH +PL PF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDNQHTIPLPPFNFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 108 bits (271), Expect(2) = e-151
Identities = 52/61 (85%), Positives = 56/61 (91%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL PR+YNCLKRSN YTLLDLLNN QEDLMKI+HFR+EDVKQ+L
Sbjct: 262 KNKKKIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLNNVQEDLMKIEHFRIEDVKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|YP_538881.1| RNA polymerase alpha subunit [Solanum bulbocastanum]
gi|108773161|ref|YP_635671.1| RNA polymerase alpha
subunit [Solanum tuberosum]
gi|565356831|ref|XP_006345266.1| PREDICTED: DNA-directed
RNA polymerase subunit alpha-like [Solanum tuberosum]
gi|90110868|sp|Q2VEE8.1|RPOA_SOLTU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|109900624|sp|Q2MIF6.1|RPOA_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|82754657|gb|ABB90071.1| RNA polymerase alpha chain
[Solanum tuberosum] gi|84371926|gb|ABC56244.1| RNA
polymerase alpha subunit [Solanum bulbocastanum]
gi|88656835|gb|ABD47088.1| RNA polymerase alpha subunit
[Solanum tuberosum] gi|329124614|gb|AEB72171.1| RNA
polymerase alpha subunit (chloroplast) [Solanum
tuberosum] gi|329124701|gb|AEB72257.1| RNA polymerase
alpha subunit (chloroplast) [Solanum tuberosum]
Length = 337
Score = 457 bits (1176), Expect(2) = e-151
Identities = 220/241 (91%), Positives = 231/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILF+EIWTNGSLTPKEALH+ASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 105 bits (261), Expect(2) = e-151
Identities = 51/61 (83%), Positives = 55/61 (90%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ ELS R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR ED+KQ+L
Sbjct: 262 KNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|YP_006666062.1| RNA polymerase alpha subunit (chloroplast) [Capsicum annuum]
gi|401065964|gb|AFP90808.1| RNA polymerase alpha subunit
(chloroplast) [Capsicum annuum]
Length = 337
Score = 456 bits (1174), Expect(2) = e-150
Identities = 220/241 (91%), Positives = 230/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD+ILPPYVE +DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVETVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 103 bits (256), Expect(2) = e-150
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR ED+KQ+L
Sbjct: 262 KNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>gb|AGW04317.1| RNA polymerase alpha subunit [Secamone afzelii]
Length = 337
Score = 453 bits (1166), Expect(2) = e-150
Identities = 218/241 (90%), Positives = 229/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRT+SKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT ITRVKF+ VPHEY
Sbjct: 15 WKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRVKFDKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD++LPPYVEI+DNTQ
Sbjct: 75 STINGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPINLCIGL+IERNRGYLI+ P N QDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPINLCIGLQIERNRGYLIQTPQNVQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN LE+NQH VPL PFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLENNQHAVPLFPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 105 bits (262), Expect(2) = e-150
Identities = 50/60 (83%), Positives = 55/60 (91%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KK+IALKSIFIDQ E PR+YNCLKRSN YTLLDLLNNSQEDLMKI+HFR+EDVKQ+L
Sbjct: 262 KKKKEIALKSIFIDQLEFPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQIL 321
>ref|YP_008563120.1| RNA polymerase alpha subunit (chloroplast) [Solanum lycopersicum]
gi|544170704|ref|AP_004960.1| RNA polymerase alpha chain
(chloroplast) [Solanum lycopersicum]
gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
(chloroplast) [Solanum lycopersicum]
gi|89241703|emb|CAJ32426.1| RNA polymerase alpha chain
[Solanum lycopersicum]
Length = 337
Score = 456 bits (1172), Expect(2) = e-150
Identities = 219/241 (90%), Positives = 231/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILF+EIWTNGSLTPKEALH+ASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 102 bits (255), Expect(2) = e-150
Identities = 50/60 (83%), Positives = 54/60 (90%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ ELS R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR ED+KQ+L
Sbjct: 262 KNKKKIALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQIL 321
>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
Length = 337
Score = 451 bits (1160), Expect(2) = e-150
Identities = 217/241 (90%), Positives = 228/241 (94%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRT+SKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT ITRVKF+ VPHEY
Sbjct: 15 WKCVESRTESKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRVKFDKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD++LPPYVEI+DNTQ
Sbjct: 75 STIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASL EPINLCIGL+IERNRGYLI+ P NFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLMEPINLCIGLQIERNRGYLIQTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEEN LE+NQH VPL PF FH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENSHLENNQHAVPLFPFIFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 107 bits (267), Expect(2) = e-150
Identities = 51/60 (85%), Positives = 56/60 (93%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KK+IALKSIFIDQ EL PR+YNCLKRSN YTLLDLLNNSQEDLMKI+HFR+EDVKQ+L
Sbjct: 262 KNKKEIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKQIL 321
>ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna]
gi|41688712|sp|Q8S8V9.1|RPOA_ATRBE RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|20068363|emb|CAC88076.1| RNA polymerase alpha subunit
[Atropa belladonna]
Length = 337
Score = 456 bits (1174), Expect(2) = e-149
Identities = 219/241 (90%), Positives = 231/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVKFE VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKFEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEI+MNLKEIVLRSNLYGT +AS+CV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEIIMNLKEIVLRSNLYGTSEASVCVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK P NFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 101 bits (251), Expect(2) = e-149
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKIALKSIFIDQ EL R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR ED+KQ+L
Sbjct: 262 KNNKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum]
gi|78102570|ref|YP_358710.1| RNA polymerase alpha
subunit [Nicotiana sylvestris]
gi|133409|sp|P06269.1|RPOA_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|90110850|sp|Q3C1M3.1|RPOA_NICSY RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|11860|emb|CAA77376.1| RNA polymerase alpha subunit
[Nicotiana tabacum] gi|10442805|gb|AAG15578.1| RNA
polymerase alpha subunit [synthetic construct]
gi|77799597|dbj|BAE46686.1| RNA polymerase alpha subunit
[Nicotiana sylvestris] gi|225228|prf||1211235BK RNA
polymerase alpha
Length = 337
Score = 455 bits (1171), Expect(2) = e-149
Identities = 220/241 (91%), Positives = 230/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEI+LRSNLYGT DASICV+GPG VTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIILRSNLYGTSDASICVKGPGSVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 102 bits (253), Expect(2) = e-149
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR EDVK++L
Sbjct: 262 KNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKRIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>gb|ADD31212.1| RNA polymerase alpha subunit protein [Aucuba japonica]
Length = 349
Score = 452 bits (1163), Expect(2) = e-149
Identities = 217/241 (90%), Positives = 228/241 (94%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESR DSKRLYYGRFILSPLMK QADTIGIAMRRALLGEIEGT ITR K E +PHEY
Sbjct: 15 WKCVESRADSKRLYYGRFILSPLMKSQADTIGIAMRRALLGEIEGTCITRAKSEKIPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQES+HEILMNLKEIVLRSNLYGTCD SICVRGPGY+TAQD+ILPPYVEI+D TQ
Sbjct: 75 STIVGIQESIHEILMNLKEIVLRSNLYGTCDTSICVRGPGYITAQDIILPPYVEIVDKTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+LCIGL+IERNRGYLIK P+NFQDGSYP+DAVFMPVRNVN+SIHSYGNGNE
Sbjct: 135 HIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVRNVNYSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EEENL LEDNQH VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLEDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 104 bits (259), Expect(2) = e-149
Identities = 50/61 (81%), Positives = 55/61 (90%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K K KIALKSIFIDQ EL PR+YNCLKRSN YTLLDLLNNSQEDLMKI+ FR++DVKQ+L
Sbjct: 262 KNKNKIALKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEQFRIQDVKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|XP_004228576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit
alpha-like [Solanum lycopersicum]
Length = 337
Score = 456 bits (1172), Expect(2) = e-149
Identities = 219/241 (90%), Positives = 231/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STITGIQESVHEILMNLKEIVLRSNLYGT +ASICV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILF+EIWTNGSLTPKEALH+ASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFIEIWTNGSLTPKEALHDASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 100 bits (250), Expect(2) = e-149
Identities = 49/60 (81%), Positives = 53/60 (88%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKK ALKSIFIDQ ELS R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR ED+KQ+L
Sbjct: 262 KNKKKXALKSIFIDQSELSSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDIKQIL 321
>ref|YP_008964898.1| RNA polymerase alpha subunit (chloroplast) [Schwalbea americana]
gi|560176732|emb|CDJ38660.1| RNA polymerase alpha
subunit (chloroplast) [Schwalbea americana]
Length = 331
Score = 463 bits (1191), Expect(2) = e-149
Identities = 224/241 (92%), Positives = 232/241 (96%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPL+KGQADTIGIAMRRALLGEIEGT ITRVK ENVPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRVKSENVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
ST+TGIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD+ILPPYVEI+DN Q
Sbjct: 75 STLTGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNMQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPINLCIGLEIERNRGYL KMPHNFQDGSYP+DAVFMPVRNVNHSIHSYGNGNE
Sbjct: 135 HIASLTEPINLCIGLEIERNRGYLRKMPHNFQDGSYPIDAVFMPVRNVNHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
QEILFLEIWTNGSLTPKEALHEASR LIDLFIPFLHKEEE LPLEDNQH VPLSP+TFH
Sbjct: 195 NQEILFLEIWTNGSLTPKEALHEASRKLIDLFIPFLHKEEETLPLEDNQHTVPLSPWTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 93.6 bits (231), Expect(2) = e-149
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQL 920
K KKK LKSIFIDQ + PRVYNCLKRSN TL DLLNN+QEDLMKI+HFRLEDVKQ+
Sbjct: 262 KNKKKRPLKSIFIDQSDFPPRVYNCLKRSNINTLWDLLNNNQEDLMKIEHFRLEDVKQI 320
>ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana undulata]
gi|347453943|gb|AEO95601.1| RNA polymerase alpha subunit
(chloroplast) [Nicotiana undulata]
gi|347454054|gb|AEO95711.1| RNA polymerase alpha subunit
[synthetic construct]
Length = 337
Score = 452 bits (1164), Expect(2) = e-149
Identities = 219/241 (90%), Positives = 229/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD+ILPP+VEI+DNTQ
Sbjct: 75 STIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPFVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTEPI+ CIGL+IERNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTEPIDFCIGLQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFT H
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEDNLYLQDNQHTVPLSPFTVH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 103 bits (257), Expect(2) = e-149
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR EDVKQ+L
Sbjct: 262 KNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322
>ref|YP_008081297.1| RNA polymerase alpha subunit (chloroplast) [Catharanthus roseus]
gi|474452108|gb|AGI51176.1| RNA polymerase alpha subunit
(chloroplast) [Catharanthus roseus]
Length = 335
Score = 452 bits (1162), Expect(2) = e-149
Identities = 218/241 (90%), Positives = 228/241 (94%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTD+KRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVKFE VPHEY
Sbjct: 15 WKCVESRTDNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKFEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD++LPPYVEI+DNTQ
Sbjct: 75 STIKGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDIVLPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASL EPI+LCI L+IERNRGYLIK P NFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLMEPIDLCIELQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTP EALHEAS+NLIDLFIPFLH EEEN LE+NQH +PLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPNEALHEASQNLIDLFIPFLHMEEENSHLENNQHPIPLSPFTFH 254
Query: 722 E 724
E
Sbjct: 255 E 255
Score = 103 bits (257), Expect(2) = e-149
Identities = 49/60 (81%), Positives = 55/60 (91%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KK+IA KSIFIDQ EL PR+YNCLKRSN YTLLDLLNNSQEDLMK++HFR+EDVKQ+L
Sbjct: 262 KKKKEIAFKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKQIL 321
>ref|YP_398896.1| RNA polymerase alpha subunit [Nicotiana tomentosiformis]
gi|90110851|sp|Q33C00.1|RPOA_NICTO RecName:
Full=DNA-directed RNA polymerase subunit alpha;
Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit alpha; Short=RNA polymerase subunit alpha
gi|80750959|dbj|BAE48035.1| RNA polymerase alpha subunit
[Nicotiana tomentosiformis]
Length = 337
Score = 451 bits (1161), Expect(2) = e-149
Identities = 219/241 (90%), Positives = 229/241 (95%)
Frame = +2
Query: 2 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTSITRVKFENVPHEY 181
WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT ITRVK E VPHEY
Sbjct: 15 WKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKSEKVPHEY 74
Query: 182 STITGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQDMILPPYVEIIDNTQ 361
STI GIQESVHEILMNLKEIVLRSNLYGT DASICV+GPGYVTAQD+ILPPYVEI+DNTQ
Sbjct: 75 STIMGIQESVHEILMNLKEIVLRSNLYGTSDASICVKGPGYVTAQDIILPPYVEIVDNTQ 134
Query: 362 HIASLTEPINLCIGLEIERNRGYLIKMPHNFQDGSYPLDAVFMPVRNVNHSIHSYGNGNE 541
HIASLTE I+ CIGL+I+RNRGYLIK PHNFQDGSYP+DAVFMPVRN NHSIHSYGNGNE
Sbjct: 135 HIASLTETIDFCIGLQIKRNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNE 194
Query: 542 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHKEEENLPLEDNQHMVPLSPFTFH 721
KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLH EE+NL L+DNQH VPLSPFTFH
Sbjct: 195 KQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHIEEDNLYLQDNQHTVPLSPFTFH 254
Query: 722 E 724
+
Sbjct: 255 D 255
Score = 103 bits (257), Expect(2) = e-149
Identities = 51/61 (83%), Positives = 54/61 (88%)
Frame = +3
Query: 744 KTKKKIALKSIFIDQFELSPRVYNCLKRSNTYTLLDLLNNSQEDLMKIKHFRLEDVKQLL 923
K KKKIALKSIFIDQ EL R+YNCLK SN YTLLDLLNNSQEDLMKI+HFR EDVKQ+L
Sbjct: 262 KNKKKIALKSIFIDQSELPSRIYNCLKMSNIYTLLDLLNNSQEDLMKIEHFRSEDVKQIL 321
Query: 924 G 926
G
Sbjct: 322 G 322