BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00010148
         (371 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   123   2e-26
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   122   5e-26
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   120   2e-25
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              120   2e-25
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           114   1e-23
gb|EPS65775.1| hypothetical protein M569_09000 [Genlisea aurea]       114   1e-23
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           113   2e-23
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   113   2e-23
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...   112   4e-23
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   112   5e-23
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   112   5e-23
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...   109   3e-22
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   109   3e-22
ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Caps...   108   1e-21
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   108   1e-21
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   107   1e-21
ref|XP_002328725.1| predicted protein [Populus trichocarpa]           107   1e-21
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   107   2e-21
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   107   2e-21
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   107   2e-21

>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  123 bits (309), Expect = 2e-26
 Identities = 59/82 (71%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 303
           S+I PPPP+   PVIRVSN++AHLG PK+GPKPRQL+SLPPFPG PLPGR S  A HVTA
Sbjct: 18  SRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNS-MASHVTA 76

Query: 304 ISWLKYYFDDIPPPVIQNHFNK 369
           ISW+KYYFD+I    IQ+HFNK
Sbjct: 77  ISWVKYYFDEILDSAIQSHFNK 98


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  122 bits (306), Expect = 5e-26
 Identities = 54/82 (65%), Positives = 66/82 (80%), Gaps = 2/82 (2%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 303
           S++ PPPP+   PV+RVSN +A+LG PK+GPKPRQL+SLPPFPG+PLPG+       VTA
Sbjct: 18  SRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPGKNPGGTARVTA 77

Query: 304 ISWLKYYFDDIPPPVIQNHFNK 369
           ISWLKYYFD+IP   IQ+HFNK
Sbjct: 78  ISWLKYYFDEIPDSAIQSHFNK 99


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  120 bits (300), Expect = 2e-25
 Identities = 60/98 (61%), Positives = 71/98 (72%), Gaps = 6/98 (6%)
 Frame = +1

Query: 94  QKAFSAVRRNTRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLP 267
           Q  F  VR  +R  I PP P+   PVIRVSN++A LG PKEGPKPRQL+SLPPFP HPLP
Sbjct: 10  QGLFPVVRHYSR--IAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP 67

Query: 268 GRKSTSAE----HVTAISWLKYYFDDIPPPVIQNHFNK 369
           G+   +      HVTAISW+KYYFD+IP  V+Q+HFNK
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNK 105


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  120 bits (300), Expect = 2e-25
 Identities = 60/98 (61%), Positives = 71/98 (72%), Gaps = 6/98 (6%)
 Frame = +1

Query: 94  QKAFSAVRRNTRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLP 267
           Q  F  VR  +R  I PP P+   PVIRVSN++A LG PKEGPKPRQL+SLPPFP HPLP
Sbjct: 10  QGLFPVVRHYSR--IAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP 67

Query: 268 GRKSTSAE----HVTAISWLKYYFDDIPPPVIQNHFNK 369
           G+   +      HVTAISW+KYYFD+IP  V+Q+HFNK
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNK 105


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  114 bits (285), Expect = 1e-23
 Identities = 55/82 (67%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
 Frame = +1

Query: 130 SKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 303
           S+IRPP  ++  PVIRVSN++A LG PKEGPKPRQL+SLPPFPG PLPG+KS   E VTA
Sbjct: 10  SRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKKS---ERVTA 66

Query: 304 ISWLKYYFDDIPPPVIQNHFNK 369
           I+W+KYYF+++   VIQ+HFNK
Sbjct: 67  ITWVKYYFEEVHDNVIQSHFNK 88


>gb|EPS65775.1| hypothetical protein M569_09000 [Genlisea aurea]
          Length = 460

 Score =  114 bits (285), Expect = 1e-23
 Identities = 60/97 (61%), Positives = 71/97 (73%), Gaps = 5/97 (5%)
 Frame = +1

Query: 94  QKAFSAV--RRNTRSKIRPPPPSQP--VIRVS-NHIAHLGRPKEGPKPRQLISLPPFPGH 258
           +KAF A   R   + KI+PPPPS P  VIRV+ N+I HLG PK+GPKPRQ + LP FPG 
Sbjct: 2   RKAFLAAPHRPRWKRKIQPPPPSAPPPVIRVTKNNIVHLGPPKDGPKPRQRLCLPAFPGC 61

Query: 259 PLPGRKSTSAEHVTAISWLKYYFDDIPPPVIQNHFNK 369
           PLPG+KS+ +  VTAISWLKYYF  IPP  IQ+HF K
Sbjct: 62  PLPGKKSSISGRVTAISWLKYYFHGIPPLAIQDHFKK 98


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  113 bits (283), Expect = 2e-23
 Identities = 55/82 (67%), Positives = 67/82 (81%), Gaps = 2/82 (2%)
 Frame = +1

Query: 130 SKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 303
           S+IRPP  ++  PVIRVSN++A LG PKEGPKPRQL+SLPPFPG PLPG+ S   E VTA
Sbjct: 10  SRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKNS---ERVTA 66

Query: 304 ISWLKYYFDDIPPPVIQNHFNK 369
           ISW+KYYF+++   VIQ+HFNK
Sbjct: 67  ISWVKYYFEEVHDNVIQSHFNK 88


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  113 bits (283), Expect = 2e-23
 Identities = 53/76 (69%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
 Frame = +1

Query: 157 QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAE-----HVTAISWLKY 321
           +PVIRVSN+I HLGR KEG KP QL+SLPPFPGHPLPG+K  +       HVTAISW+KY
Sbjct: 32  EPVIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVATGPDQPSCHVTAISWIKY 91

Query: 322 YFDDIPPPVIQNHFNK 369
           YFD+IP  VIQ HFNK
Sbjct: 92  YFDEIPGSVIQTHFNK 107


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  112 bits (281), Expect = 4e-23
 Identities = 54/91 (59%), Positives = 65/91 (71%), Gaps = 5/91 (5%)
 Frame = +1

Query: 112 VRRNTRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTS 285
           V R   S++ PPP     P+IRVSNH+A LG PKEGPKPRQL+SLPPFPGHPLPG++S  
Sbjct: 13  VARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHE 72

Query: 286 ---AEHVTAISWLKYYFDDIPPPVIQNHFNK 369
                 VTA+SW+KYYFD I    IQ+HF +
Sbjct: 73  GGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQ 103


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  112 bits (280), Expect = 5e-23
 Identities = 54/86 (62%), Positives = 66/86 (76%), Gaps = 6/86 (6%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRK----STSAE 291
           S+I PPPP+  +P+IRVSN+IA LG PKEGPK RQL+SLPPFPG+PLPG+     S  + 
Sbjct: 17  SRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGEST 76

Query: 292 HVTAISWLKYYFDDIPPPVIQNHFNK 369
           HVTAI W+KYYFD+I    IQ+HF K
Sbjct: 77  HVTAIRWVKYYFDEIQDSQIQSHFRK 102


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  112 bits (280), Expect = 5e-23
 Identities = 54/86 (62%), Positives = 66/86 (76%), Gaps = 6/86 (6%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRK----STSAE 291
           S+I PPPP+  +P+IRVSN+IA LG PKEGPK RQL+SLPPFPG+PLPG+     S  + 
Sbjct: 17  SRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGEST 76

Query: 292 HVTAISWLKYYFDDIPPPVIQNHFNK 369
           HVTAI W+KYYFD+I    IQ+HF K
Sbjct: 77  HVTAIRWVKYYFDEIQDSQIQSHFRK 102


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score =  109 bits (273), Expect = 3e-22
 Identities = 53/87 (60%), Positives = 64/87 (73%), Gaps = 7/87 (8%)
 Frame = +1

Query: 130 SKIRPPPPSQPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKS-------TSA 288
           S++ PPP S  VIRV+N++AHLG PK+GP PRQLISLPPFPGHPLPG+ +        S 
Sbjct: 21  SRVAPPPSS--VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGDSG 78

Query: 289 EHVTAISWLKYYFDDIPPPVIQNHFNK 369
            HVTAISW+KYYF++I    IQ HF K
Sbjct: 79  GHVTAISWVKYYFEEIYDKAIQTHFTK 105


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  109 bits (273), Expect = 3e-22
 Identities = 53/87 (60%), Positives = 64/87 (73%), Gaps = 7/87 (8%)
 Frame = +1

Query: 130 SKIRPPPPSQPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKS-------TSA 288
           S++ PPP S  VIRV+N++AHLG PK+GP PRQLISLPPFPGHPLPG+ +        S 
Sbjct: 21  SRVAPPPSS--VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGDSG 78

Query: 289 EHVTAISWLKYYFDDIPPPVIQNHFNK 369
            HVTAISW+KYYF++I    IQ HF K
Sbjct: 79  GHVTAISWVKYYFEEIYDKAIQTHFTK 105


>ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Capsella rubella]
           gi|482569081|gb|EOA33269.1| hypothetical protein
           CARUB_v10022381mg [Capsella rubella]
          Length = 478

 Score =  108 bits (269), Expect = 1e-21
 Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 7/99 (7%)
 Frame = +1

Query: 94  QKAFSAVRRNTRSKIRPPPPSQPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGR 273
           ++ + AV     S++ PPP +  VIRV+N++AHLG PK+GP PRQLISLPPFPG PLPG+
Sbjct: 9   RQIYMAVVTRRYSRLAPPPST--VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGPPLPGK 66

Query: 274 KST-------SAEHVTAISWLKYYFDDIPPPVIQNHFNK 369
            +        S +HVTAISW+KYYF++I    IQ HF K
Sbjct: 67  NAVDNGDDGDSGDHVTAISWVKYYFEEIHDKAIQTHFTK 105


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score =  108 bits (269), Expect = 1e-21
 Identities = 51/76 (67%), Positives = 60/76 (78%), Gaps = 5/76 (6%)
 Frame = +1

Query: 157 QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAE-----HVTAISWLKY 321
           +PVIRVSN+I HLGR K+G KP QL+SLPPFPG PLPG+K  +       HVTAISW+KY
Sbjct: 32  EPVIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIKY 91

Query: 322 YFDDIPPPVIQNHFNK 369
           YFD+IP  VIQ+HFNK
Sbjct: 92  YFDEIPGSVIQSHFNK 107


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  107 bits (268), Expect = 1e-21
 Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
 Frame = +1

Query: 163 VIRVS-NHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAISWLKYYFDDIP 339
           V+RV+  ++A LG PKEGPKPRQL+SLPPFPG PLPG+KS +A HVTAISW+KYYFD+I 
Sbjct: 22  VVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDEIQ 81

Query: 340 PPVIQNHFNK 369
             VIQ+HFNK
Sbjct: 82  DSVIQSHFNK 91


>ref|XP_002328725.1| predicted protein [Populus trichocarpa]
          Length = 116

 Score =  107 bits (268), Expect = 1e-21
 Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
 Frame = +1

Query: 163 VIRVS-NHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAISWLKYYFDDIP 339
           V+RV+  ++A LG PKEGPKPRQL+SLPPFPG PLPG+KS +A HVTAISW+KYYFD+I 
Sbjct: 22  VVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDEIQ 81

Query: 340 PPVIQNHFNK 369
             VIQ+HFNK
Sbjct: 82  DSVIQSHFNK 91


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  107 bits (267), Expect = 2e-21
 Identities = 52/81 (64%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
 Frame = +1

Query: 130 SKIRPPPPSQPVIRVSNH-IAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAI 306
           S+I PP P+  VIRVS   +AHLG PK GPKPRQL+SLPPFPGH LPG+      HVTA+
Sbjct: 19  SRISPPRPA--VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQGHVTAV 76

Query: 307 SWLKYYFDDIPPPVIQNHFNK 369
           SW+KYYFD++   VIQ+HFNK
Sbjct: 77  SWVKYYFDEVQDSVIQSHFNK 97


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score =  107 bits (267), Expect = 2e-21
 Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSA----E 291
           S+IRPP P   + VIRVSN+IA L  PKEGPKPRQL+SLPPFP HPLPG+ STSA    +
Sbjct: 22  SRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTSAPGKRD 81

Query: 292 HVTAISWLKYYFDDIPPPVIQNHFNK 369
           HVTA++W+KYYF      VI++HF +
Sbjct: 82  HVTAVNWIKYYFKGTSGSVIESHFRE 107


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  107 bits (267), Expect = 2e-21
 Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
 Frame = +1

Query: 130 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSA----E 291
           S+IRPP P   + VIRVSN+IA L  PKEGPKPRQL+SLPPFP HPLPG+ STSA    +
Sbjct: 22  SRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTSAPGKRD 81

Query: 292 HVTAISWLKYYFDDIPPPVIQNHFNK 369
           HVTA++W+KYYF      VI++HF +
Sbjct: 82  HVTAVNWIKYYFKGTSGSVIESHFRE 107