BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00008358
         (1361 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   602   e-170
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   600   e-169
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   579   e-163
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   531   e-148
gb|AGQ44775.1| general transcription factor [Camellia sinensis]       495   e-137
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   489   e-135
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   489   e-135
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   485   e-134
gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus pe...   481   e-133
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   478   e-132
ref|NP_175971.3| probable RNA polymerase II transcription factor...   475   e-131
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   475   e-131
gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Syna...   474   e-131
ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Caps...   472   e-130
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   469   e-130
ref|XP_002310512.2| transcription factor-related family protein ...   466   e-128
ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutr...   458   e-126
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   448   e-123
gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Syna...   444   e-122
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   444   e-122

>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  602 bits (1553), Expect = e-170
 Identities = 301/398 (75%), Positives = 337/398 (84%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPE+IHQIFAEKPAVRQAYL FVP KMSEKEFWTKYSRAEYLHST+N+V           
Sbjct: 202  TPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEE 261

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK+DDML SEARRKIRRVDPT+DMEAD+GDDY+HLPDHGLP  E K++LE  YEP+
Sbjct: 262  LAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPF 321

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            +RSFSQ LNQHAAVVL+GRV+DVELGDTRSVAEA +R+ QAE + E+S+ N  RE   ++
Sbjct: 322  KRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTYQAEQATEVSDENAYRERVKKV 381

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S++AEIEDLQGPQDP VA LSIKDPRDYFDSQQANA+KALGD  +G + LK SVS  EA+
Sbjct: 382  SRVAEIEDLQGPQDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFSVSKEEAF 441

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
             SL+D IS+I   GL EPI++ EVALKV   L+QNISSTK+ LG NPHESVLD LP  TK
Sbjct: 442  CSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISSTKYYLGKNPHESVLDQLPSATK 501

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
             ELL HWTS+QELLKHFWSSYPITTKY Y KVTRLKDAMSQ+YPKLQEIKESVQSD RHQ
Sbjct: 502  NELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQ 561

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSLLV PMLQALDAAFAHYDAD+Q+RSAKSGERPNGFV
Sbjct: 562  VSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFV 599


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  600 bits (1546), Expect = e-169
 Identities = 299/398 (75%), Positives = 337/398 (84%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPE+IHQIFAEKPAVRQAYL FVP KMSEKEFWTKYSRAEYLHST+N+V           
Sbjct: 202  TPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEE 261

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK+DDML SEARRKIRRVDPT+DMEAD+GDDY+HLPDHGLP  E K++LE  YEP+
Sbjct: 262  LAVFLKQDDMLVSEARRKIRRVDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPF 321

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            +RSFSQ LNQHAAVVLQGRV+DVELGDTRSVAEA +R+ QAE + E+S+ N  RE   ++
Sbjct: 322  KRSFSQYLNQHAAVVLQGRVIDVELGDTRSVAEAFTRTNQAEQATEVSDENAYRERVKKV 381

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S++AEIEDLQGP+DP VA LSIKDPRDYFDSQQANA+KALGD  +G + LK  VS  EA+
Sbjct: 382  SRVAEIEDLQGPRDPPVALLSIKDPRDYFDSQQANAIKALGDAETGIRQLKFRVSKEEAF 441

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
             SL+D IS+I   GL EPI++ EVALKV   L+QNISSTK++LG NPHESVLD LP  TK
Sbjct: 442  CSLKDSISEINSQGLIEPIISPEVALKVFNLLSQNISSTKYHLGKNPHESVLDQLPSATK 501

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
             ELL HWTS+QELLKHFWSSYPITTKY Y KVTRLKDAMSQ+YPKLQEIKESVQSD RHQ
Sbjct: 502  NELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQ 561

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSLLV PMLQALDAAFAHYDAD+Q+RSA+SGERPNGFV
Sbjct: 562  VSLLVQPMLQALDAAFAHYDADLQKRSARSGERPNGFV 599


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  579 bits (1493), Expect = e-163
 Identities = 287/398 (72%), Positives = 335/398 (84%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEIIHQIFAEKPAV QA+L+FVPNKM+EK+FW KY RAEYLH TRN V           
Sbjct: 205  TPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEE 264

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LA+EARRKIRRVDPT+DMEAD+GDDY+HLPDHG+  D  K++++  YE Y
Sbjct: 265  LAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQY 324

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+ SQDLN+HAAVVL+GR +DVEL DTR+VAEAL++SK+ E +NE S+ ++ RE  +RI
Sbjct: 325  RRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERI 384

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+M EIEDLQ P+D   A L IKDPRDYFDSQQANALK LGDT +G+K +K S+S+ EAY
Sbjct: 385  SRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAY 444

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR  IS+I+  GLS+PI+  ++ALKVL  LTQNISSTKF+LG NP ESVLD LP +TK
Sbjct: 445  GSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITK 504

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            EELLHHWTS+QELL+HFWSSYPITT YLYTK +RLKDAMSQ+YPKLQEIKESVQSDFRHQ
Sbjct: 505  EELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQ 564

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSLLV PMLQALDAAFAHYDAD Q+RSA+SGERPNGFV
Sbjct: 565  VSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNGFV 602


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  531 bits (1368), Expect = e-148
 Identities = 269/396 (67%), Positives = 317/396 (80%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEIIHQIFAEKPAV QA+L+FVPNKM+EK+FW KY RAEYLH TRN V           
Sbjct: 248  TPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEE 307

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LASEARRKIRRVDPT+DMEAD+GDDY+HLPDHG+  D  K++++  YE Y
Sbjct: 308  LAVFLKHDDILASEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQY 367

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+ SQDLN+HAAVVL+GR +DVEL DTR+VAEAL++SK+ E +NE S+ ++ RE  +RI
Sbjct: 368  RRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERI 427

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+M EIEDLQ P+D   A L IKDPRDYFDSQQANALK LGDT +G+K +K S+SS EAY
Sbjct: 428  SRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAY 487

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR  IS+I+  GLS+PI+  ++ALKVL  LTQNISSTKF+LG NP ESVLD LP +TK
Sbjct: 488  GSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITK 547

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            EELLHHWTS+QELL+HFWSSYPITT YLYTK +RLKDAMSQ+YPKLQEIKESVQSDFRHQ
Sbjct: 548  EELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQ 607

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNG 173
            VSLLV PMLQ         +   +RR ++  E P G
Sbjct: 608  VSLLVQPMLQ------RRRETLKRRRRSEPQEGPGG 637


>gb|AGQ44775.1| general transcription factor [Camellia sinensis]
          Length = 340

 Score =  495 bits (1274), Expect = e-137
 Identities = 245/335 (73%), Positives = 284/335 (84%)
 Frame = -2

Query: 1171 FLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRS 992
            FLK DD+ ASEARRKIRRVDPT+DMEAD+GDDYIHLPDHGL  D+ KD +++ YE YRRS
Sbjct: 6    FLKNDDVWASEARRKIRRVDPTLDMEADEGDDYIHLPDHGLSRDDSKDAIDSPYEEYRRS 65

Query: 991  FSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKM 812
             SQ LN+H AVVL+GR +DVELGDTRSVAEAL+RSKQ EL+NE S+ N  +E  DRIS++
Sbjct: 66   LSQVLNRHGAVVLEGRSIDVELGDTRSVAEALARSKQVELANEASDGNANQERLDRISQL 125

Query: 811  AEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSL 632
            AEIEDLQ P+DP +APL IKDPRDYFDS QANALK LGDT    + +K ++S+ EAYGSL
Sbjct: 126  AEIEDLQPPRDPPLAPLFIKDPRDYFDSHQANALKTLGDTLVETRQMKCNLSTSEAYGSL 185

Query: 631  RDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEEL 452
            R+ IS+I+  GLS+PI+  E+A KV   LTQNISSTK++LG NP ESVLD LP +TK+EL
Sbjct: 186  RECISEIKIAGLSDPIVKPEIAFKVFNGLTQNISSTKYHLGKNPQESVLDRLPNITKDEL 245

Query: 451  LHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSL 272
            LHHWTS+QELLKHFWSSYPITT YLY KV RLKDAMSQ+YPKLQEIKESVQSDFRHQVSL
Sbjct: 246  LHHWTSIQELLKHFWSSYPITTSYLYVKVGRLKDAMSQIYPKLQEIKESVQSDFRHQVSL 305

Query: 271  LVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            LV PMLQALDAAFA YDAD+Q+RSAK G+R NG+V
Sbjct: 306  LVQPMLQALDAAFARYDADLQKRSAKGGDRTNGYV 340


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  489 bits (1258), Expect = e-135
 Identities = 253/399 (63%), Positives = 306/399 (76%), Gaps = 1/399 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAV +A+L+FVPNKM+E EFWTKY RAEYL  T+N             
Sbjct: 172  TPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEE 231

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LA+E R+KIRRVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E Y
Sbjct: 232  LAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHY 291

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDR 824
            RR+  QDLN+HAAVVL+GR +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR
Sbjct: 292  RRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRG---NEGADNNANEERLDR 348

Query: 823  ISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEA 644
              ++AEIEDLQ P    +APLSIKD R+YFDSQQAN LKA  D+ +    +K S+S  EA
Sbjct: 349  TPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQAS---MKCSLSRQEA 405

Query: 643  YGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVT 464
            YGS+RD IS+I+  GLS+PI+N EVALKV   LT NISS K++LG NP E+VLD LP  T
Sbjct: 406  YGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSAT 465

Query: 463  KEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRH 284
            KE+LL+HW S+QELLKHFWSSYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RH
Sbjct: 466  KEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRH 525

Query: 283  QVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            QVSLLV PM QALDAA  HYDAD+Q+RSAKSGE+PNG+V
Sbjct: 526  QVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYV 564


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  489 bits (1258), Expect = e-135
 Identities = 253/399 (63%), Positives = 306/399 (76%), Gaps = 1/399 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAV +A+L+FVPNKM+E EFWTKY RAEYL  T+N             
Sbjct: 205  TPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEE 264

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LA+E R+KIRRVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E Y
Sbjct: 265  LAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHY 324

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDR 824
            RR+  QDLN+HAAVVL+GR +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR
Sbjct: 325  RRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRG---NEGADNNANEERLDR 381

Query: 823  ISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEA 644
              ++AEIEDLQ P    +APLSIKD R+YFDSQQAN LKA  D+ +    +K S+S  EA
Sbjct: 382  TPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDSQAS---MKCSLSRQEA 438

Query: 643  YGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVT 464
            YGS+RD IS+I+  GLS+PI+N EVALKV   LT NISS K++LG NP E+VLD LP  T
Sbjct: 439  YGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSAT 498

Query: 463  KEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRH 284
            KE+LL+HW S+QELLKHFWSSYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RH
Sbjct: 499  KEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRH 558

Query: 283  QVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            QVSLLV PM QALDAA  HYDAD+Q+RSAKSGE+PNG+V
Sbjct: 559  QVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYV 597


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  485 bits (1249), Expect = e-134
 Identities = 251/399 (62%), Positives = 304/399 (76%), Gaps = 1/399 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAV +A+L+FVPNKM+E EFWTKY RAEYL  T+N             
Sbjct: 205  TPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEE 264

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LA+E R+KIRRVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E Y
Sbjct: 265  LAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHY 324

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDR 824
            RR+  QDLN+HAAVVL+GR +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR
Sbjct: 325  RRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEALARSKRG---NEGADNNANEERLDR 381

Query: 823  ISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEA 644
              ++AEIEDLQ P    +APLSIKD R+YFDSQQAN LKA  D  +    +K S+S  EA
Sbjct: 382  TPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLKASRDAQAS---MKCSLSKQEA 438

Query: 643  YGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVT 464
            Y S+RD IS+I+  GLS+PI+N EVALKV   LT NISS K++LG NP E+VLD LP  T
Sbjct: 439  YRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSAT 498

Query: 463  KEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRH 284
            KE+LL+HW S+QELLKHFWSSYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RH
Sbjct: 499  KEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRH 558

Query: 283  QVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            QVSLLV PM QALDAA  HYDAD+Q+RSAKSGE+PNG++
Sbjct: 559  QVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYI 597


>gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus persica]
          Length = 563

 Score =  481 bits (1237), Expect = e-133
 Identities = 253/397 (63%), Positives = 300/397 (75%), Gaps = 1/397 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEI +QIFA KPAV QA+L+ VP+KM+EK+FWTKY RAEYLHSTRN V           
Sbjct: 174  TPEIKYQIFALKPAVHQAFLTLVPSKMTEKDFWTKYFRAEYLHSTRNAVAAAAEAAEDEE 233

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             A+FLK D +LASEARRKIRRVDPT+DMEAD+GDDY HLPDHG+  D  KDV E   E Y
Sbjct: 234  LAIFLKEDAILASEARRKIRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKDVTELQNELY 293

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+ SQDLN+  AVVLQGR VDV+L D R+VAEAL +S++       S+ + E+E  DRI
Sbjct: 294  RRTLSQDLNRQGAVVLQGRTVDVDLEDPRTVAEALMQSRRE------SDESAEQERLDRI 347

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            ++M EIEDLQ   D  VA L IKDPRDYFD+QQ NALK L D+ +G +  K S+++ EAY
Sbjct: 348  TRMTEIEDLQEHHDHPVAQLCIKDPRDYFDTQQVNALKTLDDSRTGTEQKKCSLTTEEAY 407

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR+ IS I+  GL    +  E+A+ VL  LTQNISSTK+ LG NP +SVLD LP  TK
Sbjct: 408  GSLREAISKIKSIGLKNSTVAPEIAITVLNGLTQNISSTKYQLGKNPQDSVLDSLPNKTK 467

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            EELLHHW S+QELL+HFWSSYPITT YL TKV RLKDAMSQ+Y +L+EIK   QSDFRHQ
Sbjct: 468  EELLHHWISIQELLRHFWSSYPITTTYLSTKVGRLKDAMSQIYRQLEEIK---QSDFRHQ 524

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKS-GERPNG 173
            VSLLV PM QALDAAF H+DAD+Q+R+A+S GE PNG
Sbjct: 525  VSLLVRPMHQALDAAFQHFDADLQKRAARSGGETPNG 561


>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  478 bits (1229), Expect = e-132
 Identities = 241/390 (61%), Positives = 297/390 (76%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEIIHQIFAEKPAV QA+L FVP+KMSE++FWTKY RAEYLH T+N V           
Sbjct: 209  TPEIIHQIFAEKPAVHQAFLKFVPSKMSERDFWTKYCRAEYLHRTKNSVAAAAEAAEDEE 268

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK DD+LASEARRKIRRVDPTVDM AD GDDY HLP HG+  D  K+ +++  E  
Sbjct: 269  LAVFLKHDDILASEARRKIRRVDPTVDMAADLGDDYSHLPGHGILRDGSKESVDSESELP 328

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            +R+  QDLN+HAAVVL+GR +DVELGDTR+VAEAL+RSKQAE++ E S+    ++  +R+
Sbjct: 329  KRTLLQDLNRHAAVVLEGRTLDVELGDTRTVAEALARSKQAEVATETSDETENQKRLERV 388

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+M EIEDLQ P+    APL IKDPR+YFDSQ+ANA KA GDTGSG       +S+ +AY
Sbjct: 389  SQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQRANAFKATGDTGSGVNKDCCHLSTKQAY 448

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
             SLR  I +++  G  +PI+  ++ALKVL  + Q +SST   LG NP  +VLD LP  TK
Sbjct: 449  ESLRAQILEVKSVGFKDPIVIPDLALKVLNDVNQQLSSTDPQLGKNPQATVLDMLPHRTK 508

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            EELL HWTS+QELL+HFWSSYP+TT +L+ KV R+KDAM+Q+Y KL E+KESVQS+FRHQ
Sbjct: 509  EELLQHWTSIQELLRHFWSSYPLTTTFLHAKVNRVKDAMAQIYRKLPEVKESVQSEFRHQ 568

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKS 191
            VSLLV PMLQ LD AF HYDA++Q+RS K+
Sbjct: 569  VSLLVKPMLQVLDEAFKHYDAEMQKRSTKT 598


>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
            [Arabidopsis thaliana]
            gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| probable RNA polymerase II
            transcription factor B subunit 1-1 [Arabidopsis thaliana]
          Length = 591

 Score =  475 bits (1223), Expect = e-131
 Identities = 243/398 (61%), Positives = 303/398 (76%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAVRQA++++VP+KM+EK+FWTKY RAEYL+ST+N             
Sbjct: 200  TPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEE 259

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++LA E R KIRRVDPT+DMEAD+GDDY HL DHG+  D   DV+E   + +
Sbjct: 260  LAVFLKPDEILARETRHKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQF 319

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            +RS  QDLN+HAAVVL+GR +DVE  DTR VAEAL+R KQ   ++  + ++  +E  +R+
Sbjct: 320  KRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANQERLERM 379

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S++A +EDLQ PQ+  +APLSIKDPRDYF+SQQ N L    +   GAK LK +V  HEAY
Sbjct: 380  SRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRGAKGLKRNV--HEAY 433

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            G L++ I +IR TGLS+P++  EV+ +V  SLT+ I++ K   G NP ES LD LPK TK
Sbjct: 434  GLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPKSTK 493

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            +E+LHHWTS+QELLKHFWSSYPITT YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQ
Sbjct: 494  DEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQ 553

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSLLV PM QALDAAF HY+ D+QRR+AKSGERPNG+V
Sbjct: 554  VSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNGYV 591


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
            lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
            ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  475 bits (1223), Expect = e-131
 Identities = 245/399 (61%), Positives = 305/399 (76%), Gaps = 1/399 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAVRQA++++VP+KM+EK+FWTKY RAEYL+ST+N             
Sbjct: 200  TPEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEE 259

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++LA E R+KIRRVDPT+DMEAD+GDDY HL DHG+  D   DV+E   + +
Sbjct: 260  LAVFLKPDEILARETRQKIRRVDPTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQF 319

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RRS  QDLN+HAAVVL+GR +DVE  DTR VAEAL+R KQ   ++  + ++   E  +R+
Sbjct: 320  RRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAEALTRVKQVSKADGETTKDANLERLERM 379

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S++A +EDLQ PQ+  +APLSIKDPRDYF+SQQ N L    +   GAK LK +V  HEAY
Sbjct: 380  SRLAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NVPRGAKGLKRNV--HEAY 433

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            G L++ I +IR TGLS+P++  EV+ +V  SLT+ IS+ K  +G NP ES LD LPK TK
Sbjct: 434  GLLKESILEIRATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTK 493

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            +E+LHHWTS+QELL+HFWSSYPITT YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQ
Sbjct: 494  DEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQ 553

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKS-GERPNGFV 167
            VSLLV PM QALDAAF HY+AD+QRR+AKS GERPNG+V
Sbjct: 554  VSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNGYV 592


>gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao]
          Length = 646

 Score =  474 bits (1220), Expect = e-131
 Identities = 253/446 (56%), Positives = 305/446 (68%), Gaps = 49/446 (10%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAV +A+L++VPNKMSE++FWTKY RAEYLHST+N V           
Sbjct: 200  TPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSVAAAAEAAEDEE 259

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK+DD+LASE+R KIRRVDPT+DM+AD+GDDY HLPDHG+  D  K+V E+  E Y
Sbjct: 260  LAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPDHGIFRDGSKEVTESENELY 319

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+ SQD+N+HAAVVL+GR VDVEL DTRSVAEAL+RSKQ   +   S  +  RE  DR+
Sbjct: 320  RRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEALARSKQESSTKGESYGDTSRERLDRV 379

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+M EIEDLQ P +  +APL IKDPRDYFDSQQ NAL+  GD  +G + +K S+SS E Y
Sbjct: 380  SRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTSGDELAGTEQIKCSLSSQEVY 439

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR+ IS I+  GL +PI+  EVA +V  +LTQ+IS+TK+N+G NP ESVLD LPK  K
Sbjct: 440  GSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTKYNIGKNPQESVLDRLPKKIK 499

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQ------------- 320
            EELLHHWTS+ ELL+HFW+SYPITT YLYTKV          Y KL+             
Sbjct: 500  EELLHHWTSILELLRHFWASYPITTSYLYTKVNAALVLTLLSYQKLEAGKQTEGCHVTYL 559

Query: 319  ------------------------------------EIKESVQSDFRHQVSLLVHPMLQA 248
                                                EIK SV SD RHQVSLL+ PM QA
Sbjct: 560  STARVVLSNYPQVPFISSLLFYLLGSSDAKASYVWMEIKGSVPSDLRHQVSLLIRPMHQA 619

Query: 247  LDAAFAHYDADVQRRSAKSGERPNGF 170
            LDAA  HY+AD+Q+RSA+SGERPNG+
Sbjct: 620  LDAAIQHYEADMQKRSARSGERPNGY 645


>ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Capsella rubella]
            gi|482575779|gb|EOA39966.1| hypothetical protein
            CARUB_v10008654mg [Capsella rubella]
          Length = 593

 Score =  472 bits (1215), Expect = e-130
 Identities = 242/400 (60%), Positives = 305/400 (76%), Gaps = 2/400 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAVRQA++S+VP+KM+EK+FWTKY RAEYL+ST+N             
Sbjct: 200  TPEIIFQIFAEKPAVRQAFISYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEE 259

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++LA E R+KIRRVDPT+DMEAD+GDDY HL DHG+  D  +DV+E   E +
Sbjct: 260  LAVFLKPDEILARETRQKIRRVDPTLDMEADEGDDYTHLMDHGIQRDGTRDVVEPQNEQF 319

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            +RS  QDLN+HAAVVL+GR +DV+  DTR VAEAL+R KQ   ++  + ++  +E  +R+
Sbjct: 320  KRSLLQDLNRHAAVVLEGRSIDVDSEDTRIVAEALTRVKQVSKADGETGKDANQERLERM 379

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S++A +EDLQ PQ+  +APLSIKDPRDYF+SQQ N L A      G K LK +V  HEA+
Sbjct: 380  SRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLNA----PRGTKGLKRNV--HEAF 433

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            G L++ I +IR  GLS+P++  EV+ +V  SLT+ IS+ K  +G NP ES LD LPK TK
Sbjct: 434  GLLKESIVEIRARGLSDPLIKPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTK 493

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            +E+LHHWTS+QELL+HFWSSYPITT YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQ
Sbjct: 494  DEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQ 553

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKS--GERPNGFV 167
            +SLLV PM QALDAAF HY+AD+QRR+AKS  GERPNG+V
Sbjct: 554  ISLLVRPMQQALDAAFQHYEADLQRRTAKSSGGERPNGYV 593


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  469 bits (1208), Expect = e-130
 Identities = 245/400 (61%), Positives = 302/400 (75%), Gaps = 3/400 (0%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEI+ +IFAEKPAV QAYLS VPNKMSE++FWTKY RAEYL  +RN+            
Sbjct: 200  TPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEE 259

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             A+FLK DD+LASE R+KIR VDPT+DMEAD+GDDY HLPDHG+  D  KDV+E+ +EPY
Sbjct: 260  LALFLKPDDILASETRQKIRCVDPTLDMEADQGDDYTHLPDHGIVRDGSKDVIESQHEPY 319

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVE-LGDTRSVAEALSRSKQA-ELSNEISNRNLERELSD 827
            RR+  QDLN+HAAVVL+G  +D E L DT++VA+AL+RSK+  +  N  ++ N  +E S+
Sbjct: 320  RRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADALARSKRGIKTINREADGNANQERSN 379

Query: 826  RISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHE 647
            RIS+M EIEDLQG  D  +APL IKDPRDYFDSQQA+ALK   D  SG +  + S+SS E
Sbjct: 380  RISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQASALKNSRDIPSGTEAARCSLSSQE 439

Query: 646  AYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKV 467
            AY SLRD I+  +  GL++PI+  E+A KVL  LT NISSTK++LG N  ESVLD LP  
Sbjct: 440  AYASLRDSITQTKAMGLNDPIVKPEIATKVLSILTHNISSTKYHLGKNSRESVLDRLPNT 499

Query: 466  TKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFR 287
             KEELLHHW S++ELL+H+WSSYPITT YLY KV+RLKDAMS++  +LQE+KESVQSD  
Sbjct: 500  IKEELLHHWMSIEELLRHYWSSYPITTAYLYAKVSRLKDAMSKIDSQLQEMKESVQSDLX 559

Query: 286  -HQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGF 170
             H  SL + P   AL+AA  HYDAD+Q+RSAKS ERPNG+
Sbjct: 560  FHATSLGIVP---ALEAAMQHYDADLQKRSAKSAERPNGY 596


>ref|XP_002310512.2| transcription factor-related family protein [Populus trichocarpa]
            gi|550334091|gb|EEE90962.2| transcription factor-related
            family protein [Populus trichocarpa]
          Length = 603

 Score =  466 bits (1198), Expect = e-128
 Identities = 243/402 (60%), Positives = 302/402 (75%), Gaps = 5/402 (1%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNV---VXXXXXXXX 1190
            TPEI+ ++FAEKPAV +AYL  VP KMSE++FW+KY RAEYL   +N             
Sbjct: 201  TPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAEYLQHAKNANAAAAAAAEAAE 260

Query: 1189 XXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHY 1010
                A+FLK DD+LASE RRKIR VDPT++MEAD+GDDY HLPDHG+  D  K++ E+ +
Sbjct: 261  DEELALFLKPDDILASETRRKIRCVDPTLNMEADEGDDYTHLPDHGIVRDGSKEITESQH 320

Query: 1009 EPYRRSFSQDLNQHAAVVLQGRVVDVE-LGDTRSVAEALSRSKQAE-LSNEISNRNLERE 836
            E Y R+ SQ+LN+HAAVVLQG  +D E L DT++VAEAL +SKQ +  SNE ++ N  ++
Sbjct: 321  ELYIRTLSQELNRHAAVVLQGTPIDEEQLKDTQTVAEALKQSKQGQNASNEETDMNANQD 380

Query: 835  LSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVS 656
               RISKM EI+DLQ   D  +APLSIKDPRDYFDSQQA ALK   DT  G  P+K  +S
Sbjct: 381  RLSRISKMMEIDDLQASSDLPLAPLSIKDPRDYFDSQQATALKNSRDTSIGTDPVKRILS 440

Query: 655  SHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGL 476
            + E+Y SLRD IS I+ TGL +PI+  EVA+KVL  LT NISSTK++ G N   SVLD L
Sbjct: 441  AEESYASLRDSISLIKTTGLVDPIIKPEVAVKVLSVLTHNISSTKYDTGKNHGLSVLDTL 500

Query: 475  PKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQS 296
            P   KEELL+HWTS+QELLKH+WSSYPITT YLYTKV+RLKDAMS++  +LQE+KESVQS
Sbjct: 501  PNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRLKDAMSKIDSQLQELKESVQS 560

Query: 295  DFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGF 170
            D RHQV+LL+ PM QAL+AA  HYDA++Q+RSA+SG+R NG+
Sbjct: 561  DLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSNGY 602


>ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutrema salsugineum]
            gi|557089185|gb|ESQ29893.1| hypothetical protein
            EUTSA_v10011333mg [Eutrema salsugineum]
          Length = 597

 Score =  458 bits (1178), Expect = e-126
 Identities = 238/403 (59%), Positives = 300/403 (74%), Gaps = 5/403 (1%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            T EII QIFAEKPAVRQA++++VP+KM+EK+FWTKY RAEYL+ST+N             
Sbjct: 201  TSEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEE 260

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++LA E R+KIRRVDPT+DMEAD+GDDY HL DHG+  D  KDV+E+  + +
Sbjct: 261  LAVFLKPDEILARETRQKIRRVDPTLDMEADQGDDYSHLMDHGIQRDGTKDVVESQNDQF 320

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RRS  QDLN+H+AVVL+GR +DVE  DTR VAEAL+R+KQ   ++  + ++  ++  +R+
Sbjct: 321  RRSLLQDLNRHSAVVLEGRSIDVESEDTRVVAEALTRAKQVSKADGETTKDANQDRLERM 380

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+ AE+EDLQ PQ+  +APLSIKDPRDYF+SQQ N L    +   GA  L  +V  HEAY
Sbjct: 381  SRTAEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVL----NEPRGAGALNRNV--HEAY 434

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            G L++ I +IR  GLS P++  EV+ +V  SLTQ IS+ K  +G NP ES LD LPK TK
Sbjct: 435  GLLKESILEIRTKGLSYPLIKSEVSFEVFSSLTQTISTAKNIIGKNPRESFLDRLPKSTK 494

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            +E+LHHWTS+QELL+HFWSSYPITT YL+TKV +LKDAMS  Y +L  +K+SVQSD RHQ
Sbjct: 495  DEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSQLDAMKQSVQSDLRHQ 554

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAK-----SGERPNGFV 167
            VSLLV PM QALDAAF HY+ D+QRR+AK     S ERPNG V
Sbjct: 555  VSLLVRPMQQALDAAFQHYETDLQRRTAKSVGGSSSERPNGGV 597


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  448 bits (1152), Expect = e-123
 Identities = 228/398 (57%), Positives = 294/398 (73%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEI +QIFA KPAV QA+L+FVP+KMSE +FW KY +AEY+HST+N +           
Sbjct: 196  TPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYIHSTKNTIAAAAEAAEDED 255

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++L +EAR+K+RRVDPT+DMEAD+GDDY HLPDHG+  D  K+  EA    Y
Sbjct: 256  LAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETAEAQNTFY 315

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+  QDLN+ + VVL+G+ +D+++   R+VAE L+R KQ       S+  +E E  +RI
Sbjct: 316  RRTLLQDLNRQSEVVLEGKTLDMDMEHPRTVAEVLARRKQE------SDGVIEEERRNRI 369

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            SKM +IEDLQ   D   APL IKDPRDYFDSQQ NALK+L D+ +G + ++ ++ S EAY
Sbjct: 370  SKMTQIEDLQAQDDHRFAPLCIKDPRDYFDSQQVNALKSLDDSLAGKEQIRCNLGSEEAY 429

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR+ IS I+  GL +P+++ EVA KVL  LT+NISSTK +LG +  ESVLD LP  TK
Sbjct: 430  GSLRESISKIKAIGLMDPLLSPEVAFKVLNGLTKNISSTKSHLGKSSQESVLDILPNTTK 489

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            E+LL HW   QELL+HFWSSYP+TT+ L  K  R+KDA+SQ+Y KL+EIK S +SD RHQ
Sbjct: 490  EKLLDHWVCSQELLRHFWSSYPVTTQNLVNKTKRMKDAISQIYSKLEEIKVSAKSDLRHQ 549

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSL+VHPM QALDAA  HYDADV++R+A+ G +PNG+V
Sbjct: 550  VSLVVHPMQQALDAALLHYDADVRKRNAR-GTKPNGYV 586


>gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 4, partial
            [Theobroma cacao]
          Length = 516

 Score =  444 bits (1142), Expect = e-122
 Identities = 223/347 (64%), Positives = 271/347 (78%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEII QIFAEKPAV +A+L++VPNKMSE++FWTKY RAEYLHST+N V           
Sbjct: 156  TPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEYLHSTKNSVAAAAEAAEDEE 215

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK+DD+LASE+R KIRRVDPT+DM+AD+GDDY HLPDHG+  D  K+V E+  E Y
Sbjct: 216  LAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPDHGIFRDGSKEVTESENELY 275

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+ SQD+N+HAAVVL+GR VDVEL DTRSVAEAL+RSKQ   +   S  +  RE  DR+
Sbjct: 276  RRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEALARSKQESSTKGESYGDTSRERLDRV 335

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            S+M EIEDLQ P +  +APL IKDPRDYFDSQQ NAL+  GD  +G + +K S+SS E Y
Sbjct: 336  SRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTSGDELAGTEQIKCSLSSQEVY 395

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR+ IS I+  GL +PI+  EVA +V  +LTQ+IS+TK+N+G NP ESVLD LPK  K
Sbjct: 396  GSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTKYNIGKNPQESVLDRLPKKIK 455

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQ 320
            EELLHHWTS+ ELL+HFW+SYPITT YLYTKV RLKDAMS +YP+L+
Sbjct: 456  EELLHHWTSILELLRHFWASYPITTSYLYTKVNRLKDAMSHIYPQLE 502


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  444 bits (1141), Expect = e-122
 Identities = 228/398 (57%), Positives = 289/398 (72%)
 Frame = -2

Query: 1360 TPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXX 1181
            TPEI +QIFA KPAV QA+L+FVP+KMSE +FW KY +AEYLHST+N +           
Sbjct: 197  TPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDED 256

Query: 1180 XAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPY 1001
             AVFLK D++L +EAR+K+RRVDPT+DMEAD+GDDY HLPDHG+  D  K+  EA    Y
Sbjct: 257  LAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLY 316

Query: 1000 RRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRI 821
            RR+  QDLN+ + VVL+G+ +D+++   R+  EAL+R K         +  +  E  +RI
Sbjct: 317  RRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVEALARRKH-------ESDGVVEERRNRI 369

Query: 820  SKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAY 641
            SKMA+IEDLQ   D   APL IKDPRDYFDSQQANA+K L D+ SG + ++ ++ S EAY
Sbjct: 370  SKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKIRCNLGSEEAY 429

Query: 640  GSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTK 461
            GSLR+ IS+I+  GL +P+++ EVA KVL  LT+NISSTK NLG +  ESVLD LP  TK
Sbjct: 430  GSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILPNTTK 489

Query: 460  EELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQ 281
            E+LL HW   QELL+HFWSSYP+T + L  K  RLKDA+SQ+Y KL+EIK S +SD RHQ
Sbjct: 490  EKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSDLRHQ 549

Query: 280  VSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGFV 167
            VSL+VHPM QALDAA  HYDAD+ RR+AK G + NG+V
Sbjct: 550  VSLVVHPMQQALDAALLHYDADITRRNAK-GSKRNGYV 586