BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00007906
         (1561 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   429   e-117
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   419   e-114
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   405   e-110
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   395   e-107
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   384   e-104
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   380   e-102
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   379   e-102
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   378   e-102
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           378   e-102
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   375   e-101
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   365   3e-98
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                360   1e-96
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       357   1e-95
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               353   9e-95
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   353   9e-95
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   351   6e-94
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   350   9e-94
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               345   2e-92
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              338   5e-90
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   337   8e-90

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  429 bits (1102), Expect = e-117
 Identities = 216/508 (42%), Positives = 323/508 (63%), Gaps = 4/508 (0%)
 Frame = +3

Query: 39   SALCESVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSV 218
            S L E  K+L A+    +  + S L QK++  +L+  D N+KFF + +K   +RK  N +
Sbjct: 323  SELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIK---VRKARNKI 379

Query: 219  IL---EDGSKTSSFDELSKAFVNYFKNLFGTSL-QTCPVDLQTLQTGPCIDEDDFSLLSS 386
            +L   + G + +   E+     N+++ L GTS  Q   +DL  ++ G  +     + L  
Sbjct: 380  VLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQ 439

Query: 387  PITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINH 566
            PIT Q I  AL DI+D ++PG DGF+S FFKKSW ++  ++   + +FF++  + + IN 
Sbjct: 440  PITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINC 499

Query: 567  TAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNI 746
            TA+ LIPK D +    D+RPIACC+ +YK+I+KIL  +L++VI +++D AQ+ FI  R+I
Sbjct: 500  TAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHI 559

Query: 747  TDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVME 926
             DNI LA E+IR Y R  +SPRC IKVD++KAYD++ W FLE +L  LGFP +FI W+M 
Sbjct: 560  GDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMA 619

Query: 927  CVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHP 1106
            CV + SYSI +NG     F  ++GLRQGDP+SP LF L MEYLSR +        F +HP
Sbjct: 620  CVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHP 679

Query: 1107 RCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGD 1286
            +CE +K+THL FADDL++F+R D  S+  ++   N F  ASGL  +  KS ++  G+  +
Sbjct: 680  KCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHE 739

Query: 1287 KLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRL 1466
            + + + + +  P+G+LP RYLGVPLA+++LN +   PL D+I +    W A+ LSYAGRL
Sbjct: 740  EAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRL 799

Query: 1467 LLIKSVLQGVECFWLQIFPLPITVIDRI 1550
             L+K++L  ++ +W QIFPLP  +I  +
Sbjct: 800  QLVKTILYSMQNYWGQIFPLPKKLIKAV 827


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  419 bits (1077), Expect = e-114
 Identities = 207/488 (42%), Positives = 302/488 (61%), Gaps = 1/488 (0%)
 Frame = +3

Query: 99   ERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSKAFVN 278
            E S L QK++  +L   D N+K F + VK      +++ +  EDG      DE+ +  + 
Sbjct: 340  EDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILE 399

Query: 279  YFKNLFGTSLQTCP-VDLQTLQTGPCIDEDDFSLLSSPITPQAIKLALFDIEDERSPGPD 455
            ++K L GT   T   VDL T++ G C+       L   +    I  AL  I ++++PG D
Sbjct: 400  FYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLD 459

Query: 456  GFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIAC 635
            GF++ FFKKSW  +  ++ A + EFF++S++ R IN   + L+PK  H+  V +FRPIAC
Sbjct: 460  GFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIAC 519

Query: 636  CNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRC 815
            C V+YK+I+K+L ++++ +I ++++ AQS FI GR+I DNI LA E+IR Y R  +SPRC
Sbjct: 520  CTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRC 579

Query: 816  AIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKR 995
             +KVD++KAYD++ WSFLE +L   GFP  F+ W+MECVS+ SYS+ +NG     F  ++
Sbjct: 580  IMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARK 639

Query: 996  GLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDLMLFSRGD 1175
            GLRQGDPMSP LF LCMEYLSR L+    +  F +HP+CE L ITHL FADDL++F R D
Sbjct: 640  GLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRAD 699

Query: 1176 LPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGV 1355
              S+  +      F +ASGL  +  KSN++  G+  +    + + ++  LG LP RYLGV
Sbjct: 700  KSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGV 759

Query: 1356 PLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPIT 1535
            PL +++L      PL + I +    W A  LSYAGRL LIKS+L  ++ +W  IFPL   
Sbjct: 760  PLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKK 819

Query: 1536 VIDRINRL 1559
            VI  + ++
Sbjct: 820  VIQAVEKV 827


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  405 bits (1042), Expect = e-110
 Identities = 210/513 (40%), Positives = 320/513 (62%), Gaps = 5/513 (0%)
 Frame = +3

Query: 36   NSALCESVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNS 215
            +S L    KE       LA AE  FL QK++  +L   D N  FFH ++       +++ 
Sbjct: 325  SSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHY 384

Query: 216  VILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPVD----LQTLQTGPCIDEDDFSLLS 383
            ++ + G +  + DEL    V++FK LFG+S      +    + +L    C DE+   LL 
Sbjct: 385  LLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKC-DENTRQLLE 443

Query: 384  SPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQIN 563
            + ++   IK   F +   +SPGPDG++S FFKK+W IVG  +IAAV EFF S ++L Q N
Sbjct: 444  AEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWN 503

Query: 564  HTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRN 743
             TA+ ++PK  ++  + +FRPI+CCN +YKVI+K+LA +LE+++P  I P+QSAF+ GR 
Sbjct: 504  STAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRL 563

Query: 744  ITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVM 923
            +T+N+ LA E+++ + +  IS R  +KVDL+KA+D++ W F+ + L     PP F++W+ 
Sbjct: 564  LTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIK 623

Query: 924  ECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYH 1103
            +C++S S+SI ++GSL G F G +GLRQGDP+SP+LF++ ME LSRLL+ + +  +  YH
Sbjct: 624  QCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYH 683

Query: 1104 PRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIG 1283
            P+   ++I+ LAFADDLM+F  G   S++ +   L  FKN SGL++N+ KS ++TAG+  
Sbjct: 684  PKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLED 743

Query: 1284 -DKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAG 1460
             DK D +     F  GT P RYLG+PL  ++L  + Y+ L D+IA+  N W   +LS+AG
Sbjct: 744  TDKEDTL--AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAG 801

Query: 1461 RLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            RL LI SV+     FWL  F LP   +  I ++
Sbjct: 802  RLQLISSVIYSTVNFWLSSFILPKCCLKTIEQM 834


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  395 bits (1015), Expect = e-107
 Identities = 200/481 (41%), Positives = 294/481 (61%), Gaps = 11/481 (2%)
 Frame = +3

Query: 150  DRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPVDL 329
            DRNNK FH  +        +  ++  DG   +S  ++    VNYF++     LQT P D 
Sbjct: 91   DRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDF----LQTIPADY 146

Query: 330  QTLQTGPCIDE-----------DDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFF 476
            +    G C++E           DD  LL+  +T + IK  +F +  ++SPGPDG++S F+
Sbjct: 147  E----GMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFY 202

Query: 477  KKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKV 656
            K SW+I+G++VI A+  FF    + + +N T +ALIPK   +  + D+RPI+CCNV+YK 
Sbjct: 203  KASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKA 262

Query: 657  ITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLK 836
            I+KILA++L+ ++PK I   QSAF+  R + +N+ LA E++++Y +  IS RCA+K+D+ 
Sbjct: 263  ISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDIS 322

Query: 837  KAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDP 1016
            KA+D++ WSFL  VL  + FP  FI W+  C+S+AS+SI +NG L G F   RGLRQG  
Sbjct: 323  KAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCS 382

Query: 1017 MSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKIL 1196
            +SP LF++ M+ LSR+L        F YHPRC+ L +THL FADDLM+ + G + SV  +
Sbjct: 383  LSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGI 442

Query: 1197 IDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRL 1376
            +  LN F    GL +   K+ L+ AG+       + +  +F +G LPVRYLG+PL  +RL
Sbjct: 443  VKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRL 502

Query: 1377 NVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINR 1556
              + Y+PL D+I   I  WT+  LS+AGRL LI SVL  +  FW+  F LP   I+ INR
Sbjct: 503  TTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINR 562

Query: 1557 L 1559
            +
Sbjct: 563  I 563


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  384 bits (985), Expect = e-104
 Identities = 200/520 (38%), Positives = 310/520 (59%), Gaps = 8/520 (1%)
 Frame = +3

Query: 24   ADPLNSALCESVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRK 203
            A+P  S++ E   E  AK   +A  E  FL Q++K  +L+  DRNNK FH  V     + 
Sbjct: 217  ANPSPSSMQEE-NEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQN 275

Query: 204  QMNSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPVD--------LQTLQTGPCID 359
             +  +I  DGS  S  +++     ++F+      LQ  P D        LQ L    C D
Sbjct: 276  SIREIICHDGSVASQEEKIKTEAEHHFREF----LQLIPNDFEGIAVEELQDLLPYRCSD 331

Query: 360  EDDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDS 539
             D   +L++ ++ + I   +F + +++SPGPDG+++ F+K +W+I+G + I A+  FF  
Sbjct: 332  SDK-EMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAK 390

Query: 540  SKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQ 719
              + + IN T +ALIPK   +  + D+RPI+CCNV+YKVI+KI+A++L+ V+PK I   Q
Sbjct: 391  GFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQ 450

Query: 720  SAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFP 899
            SAF+  R + +N+ LA EI+++Y +  +S RCA+K+D+ KA+D++ W FL  VL  + FP
Sbjct: 451  SAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFP 510

Query: 900  PIFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRT 1079
            P F  W+  C+++AS+S+ +NG L G F   R LRQG  +SP LF++ M+ LS++L    
Sbjct: 511  PEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAV 570

Query: 1080 NTLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSN 1259
                F YHP+C A+ +THL+FADDLM+ S G + S+  ++  L +F   SGL ++  KS 
Sbjct: 571  GARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKST 630

Query: 1260 LFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTA 1439
            ++ AG+       I    +F +G LPVRYLG+PL ++RL  +   PL +++   I  WT+
Sbjct: 631  MYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTS 690

Query: 1440 NSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
              LS+AGRL LI S L  +  FW+  F LP   I  I++L
Sbjct: 691  RFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKL 730


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  380 bits (975), Expect = e-102
 Identities = 196/518 (37%), Positives = 306/518 (59%), Gaps = 6/518 (1%)
 Frame = +3

Query: 24   ADPLNSALCESVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRK 203
            A+P    + E +K      T L++ E  FL QK+K  ++N  D NN +FH   +   +R 
Sbjct: 626  ANPSQETIAEELKAY-TDWTHLSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRN 684

Query: 204  QMNSVILEDGSKTSSFDEL---SKAFVNYFKNLFGTSLQTCPV-DLQTLQTGPCIDEDDF 371
             +  +   +     + +E+   ++ F N F N          V DL+ L +  C   D  
Sbjct: 685  SIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQ- 743

Query: 372  SLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKIL 551
            ++L+  +T + I+  LF + + +SPGPDG++S FFK +W + G D IAA+  FF    + 
Sbjct: 744  NILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLP 803

Query: 552  RQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFI 731
            + +N T +ALIPK D +  + D+RPI+CCNV+YKVI+KILA++L+ ++P  I   QSAF+
Sbjct: 804  KGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFV 863

Query: 732  SGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFI 911
              R + +N+ LA E++++Y +  ++PRCA+K+D+ KA+D++ W FL   L  L FP  F 
Sbjct: 864  KERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFR 923

Query: 912  SWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLT 1091
             W+  C+S+A++S+ +NG L G F   RGLRQG  +SP LF++CM  LS ++        
Sbjct: 924  HWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRN 983

Query: 1092 FKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTA 1271
              YHP+CE + +THL FADDLM+F  G   S++ +I+   +F   SGL ++  KS ++ A
Sbjct: 984  IGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLA 1043

Query: 1272 GIIGDKLDNIHNLLNFPL--GTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANS 1445
            G+     D +  L +FP   G LPVRYLG+PL  +++    Y+PL + + + I+ WTA S
Sbjct: 1044 GVSAS--DRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARS 1101

Query: 1446 LSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            LSYAGRL L+ SV+  +  FW+  + LP   I  I +L
Sbjct: 1102 LSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKL 1139


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  379 bits (974), Expect = e-102
 Identities = 197/499 (39%), Positives = 295/499 (59%), Gaps = 8/499 (1%)
 Frame = +3

Query: 87   LAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSK 266
            +A  E  +L QK+K  +    D+N K FH           +  ++  DG   +  DE+  
Sbjct: 349  VAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKA 408

Query: 267  AFVNYFKNLFGTSLQTCPVD--------LQTLQTGPCIDEDDFSLLSSPITPQAIKLALF 422
                +F+      LQ  P D        LQ L    C D D  SL+  P+T + I+  LF
Sbjct: 409  EAERFFREF----LQLIPNDFEGVTITELQQLLPVRCSDADQQSLIR-PVTAEEIRKVLF 463

Query: 423  DIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHS 602
             +  ++SPGPDG++S FFK +W+I+G++   AV  FF    + + IN T +ALIPK   +
Sbjct: 464  RMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEA 523

Query: 603  PTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIR 782
              + D+RPI+CCNV+YKVI+KI+A++L+ V+PK I   QSAF+  R + +N+ LA E+++
Sbjct: 524  REMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVK 583

Query: 783  NYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICIN 962
            +Y +  IS RCAIK+D+ KA+D++ W FL  V   LGFP  FI W+  C+++AS+S+ +N
Sbjct: 584  DYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVN 643

Query: 963  GSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAF 1142
            G L G F   RGLRQG  +SP LF++CM+ LS++L        F YHP+C+ + +THL+F
Sbjct: 644  GELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSF 703

Query: 1143 ADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFP 1322
            ADDLM+ S G + S++ +I   ++F   SGL ++  KS ++ AG+     + + +   F 
Sbjct: 704  ADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFS 763

Query: 1323 LGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVEC 1502
             G LPVRYLG+PL  +RL+     PL +++   I  WT+  LSYAGRL LI SVL  +  
Sbjct: 764  SGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICN 823

Query: 1503 FWLQIFPLPITVIDRINRL 1559
            FWL  F LP   I  + ++
Sbjct: 824  FWLAAFRLPRKCIRELEKM 842


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  378 bits (971), Expect = e-102
 Identities = 197/514 (38%), Positives = 311/514 (60%), Gaps = 6/514 (1%)
 Frame = +3

Query: 36   NSALCESVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQM 209
            N ++  +  EL+A  K   L+ AE SF  Q+++  +    D N  +FH +V        +
Sbjct: 185  NPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTI 244

Query: 210  NSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPV---DLQTLQTGPCIDEDDFSLL 380
            NS++  +G    S   +    V Y++ L G+      +   D+  L T  C  +D  S L
Sbjct: 245  NSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC-SQDQCSEL 303

Query: 381  SSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQI 560
                T   IK A   +   ++ GPDG+S  FF+ +W I+G +V+AA+ EFFDS ++L+Q 
Sbjct: 304  EKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQW 363

Query: 561  NHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGR 740
            N T + LIPKT ++ T+++FRPI+C N +YKVI+K+L S+L+ ++  +I  +QSAF+ GR
Sbjct: 364  NATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGR 423

Query: 741  NITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWV 920
            ++ +N+ LA E++  Y R+ ISPR  +KVDLKKA+D++ W F+   L  L  P  +I+W+
Sbjct: 424  SLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWI 483

Query: 921  MECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKY 1100
             +C+++ S++I +NG+  G F   +GLRQGDP+SP LF+L ME  S+LL  R ++    Y
Sbjct: 484  HQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHY 543

Query: 1101 HPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGI- 1277
            HP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  KS LF AG+ 
Sbjct: 544  HPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD 603

Query: 1278 IGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYA 1457
            + +++ +      FP GT P+RYLG+PL  ++L +  Y PL +++++ +  W + +LS+A
Sbjct: 604  LSERITSA--AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFA 661

Query: 1458 GRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            GR  LI SV+ G+  FW+  F LP   I +I  L
Sbjct: 662  GRTQLISSVIFGLINFWMSTFLLPKGCIKKIESL 695


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  378 bits (971), Expect = e-102
 Identities = 197/514 (38%), Positives = 311/514 (60%), Gaps = 6/514 (1%)
 Frame = +3

Query: 36   NSALCESVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQM 209
            N ++  +  EL+A  K   L+ AE SF  Q+++  +    D N  +FH +V        +
Sbjct: 185  NPSVSNAALELEAQRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTI 244

Query: 210  NSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPV---DLQTLQTGPCIDEDDFSLL 380
            NS++  +G    S   +    V Y++ L G+      +   D+  L T  C  +D  S L
Sbjct: 245  NSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMNLLLTYRC-SQDQCSEL 303

Query: 381  SSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQI 560
                T   IK A   +   ++ GPDG+S  FF+ +W I+G +V+AA+ EFFDS ++L+Q 
Sbjct: 304  EKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQW 363

Query: 561  NHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGR 740
            N T + LIPKT ++ T+++FRPI+C N +YKVI+K+L S+L+ ++  +I  +QSAF+ GR
Sbjct: 364  NATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGR 423

Query: 741  NITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWV 920
            ++ +N+ LA E++  Y R+ ISPR  +KVDLKKA+D++ W F+   L  L  P  +I+W+
Sbjct: 424  SLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWI 483

Query: 921  MECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKY 1100
             +C+++ S++I +NG+  G F   +GLRQGDP+SP LF+L ME  S+LL  R ++    Y
Sbjct: 484  HQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHY 543

Query: 1101 HPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGI- 1277
            HP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  KS LF AG+ 
Sbjct: 544  HPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLD 603

Query: 1278 IGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYA 1457
            + +++ +      FP GT P+RYLG+PL  ++L +  Y PL +++++ +  W + +LS+A
Sbjct: 604  LSERITSA--AYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFA 661

Query: 1458 GRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            GR  LI SV+ G+  FW+  F LP   I +I  L
Sbjct: 662  GRTQLISSVIFGLINFWMSTFLLPKGCIKKIESL 695


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  375 bits (964), Expect = e-101
 Identities = 204/517 (39%), Positives = 308/517 (59%), Gaps = 7/517 (1%)
 Frame = +3

Query: 30   PLNSALCESVKELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQM 209
            P N+A+     E + K   LA+AE SF  Q+++ ++L   D N+ +FH   K  S R+ +
Sbjct: 225  PSNAAI---EAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYFH---KMASARQSL 278

Query: 210  NSV-ILED--GSKTSSFDELSKAFVNYFKNLFGTSLQTCPV----DLQTLQTGPCIDEDD 368
            N +  L D  G +      L    V YF++  G+  Q  P+    D+  L +  C     
Sbjct: 279  NHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSE-QGLPLFEQADISNLLSYRCSPAQQ 337

Query: 369  FSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKI 548
             SL  +P + + IK A F +   ++ GPDGFS  FF   W I+G +V  A+ EFF S K+
Sbjct: 338  VSL-DTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKL 396

Query: 549  LRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAF 728
            L+Q N T + LIPK  ++ +++DFRPI+C N VYKVI+K+L  +L+  +P  I  +QSAF
Sbjct: 397  LKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAF 456

Query: 729  ISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIF 908
            + GR   +N+ LA E++  Y +  I+P   +KVDL+KA+D++ W F+   L  L  P  F
Sbjct: 457  MPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKF 516

Query: 909  ISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTL 1088
              W++EC+S+AS+S+ +NG   G F   +GLRQGDPMSP LF+L ME  S LL+ R  + 
Sbjct: 517  TCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSG 576

Query: 1089 TFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFT 1268
               YHP+   L+I+HL FADD+M+F  G   S+  +++ L DF   SGL +N+ K+ L+ 
Sbjct: 577  YIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYH 636

Query: 1269 AGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSL 1448
            AG+   + D++ +   F LG+LPVRYLG+PL +++L +  YAPL ++I +  N W    L
Sbjct: 637  AGLSQSESDSMAS-YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLL 695

Query: 1449 SYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            S+AGR+ L+ SV+ G+  FW+  F LP+  I +I  L
Sbjct: 696  SFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESL 732


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  365 bits (937), Expect = 3e-98
 Identities = 189/484 (39%), Positives = 281/484 (58%), Gaps = 2/484 (0%)
 Frame = +3

Query: 111  LSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSKAFVNYFKN 290
            L +K++  +L   D+N+ FF   + ++  R ++ ++   DG       +L+K+  N F +
Sbjct: 222  LKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDGP------DLAKSLCNEFTH 275

Query: 291  LFGTSLQTCPVDLQTLQTGPCIDEDDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSG 470
                                    DD            I+   F +   +SPGPDGF+  
Sbjct: 276  ------------------------DD------------IRAVFFSMNPNKSPGPDGFNGC 299

Query: 471  FFKKSWDIVGNDVIAA-VSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVV 647
            FF+K+W ++G++V+AA V EFF    +L ++N T I L+PK  +  T++DFRPI+CCN  
Sbjct: 300  FFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTF 359

Query: 648  YKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKV 827
            YK+I K+LA++L+  +  ++ P+QS FI GR I DNI LAQEII +Y +    PRC   V
Sbjct: 360  YKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMV 419

Query: 828  DLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKRGLRQ 1007
            D+ KA DT+ W F+   L     P   I W+  C+SSA +S+C+NG L G F  +RGLRQ
Sbjct: 420  DMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQ 479

Query: 1008 GDPMSPALFLLCMEYLSRLLKVRTN-TLTFKYHPRCEALKITHLAFADDLMLFSRGDLPS 1184
            GDP+SP LF++ ME LS  ++ R N +  F+YH RC+ L ++HL FADDL++F  GD  S
Sbjct: 480  GDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENS 539

Query: 1185 VKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLA 1364
            V+ L D  ++F++ S L  N  +S +F AG+ G+  D++  + NF LGT PVRYLG+PL 
Sbjct: 540  VRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLI 599

Query: 1365 AQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVID 1544
              +L +   +PL DRI + I  W    LS+AGRL LI+SVL  ++ +W     LP  V+ 
Sbjct: 600  TSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLK 659

Query: 1545 RINR 1556
             I +
Sbjct: 660  DIEK 663


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  360 bits (923), Expect = 1e-96
 Identities = 177/412 (42%), Positives = 260/412 (63%)
 Frame = +3

Query: 324  DLQTLQTGPCIDEDDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGN 503
            +LQ L +  C   D   +L+  +T +  +  LF +   + PGPDG++S FFK +W I G 
Sbjct: 5    ELQNLMSFRCSATDQ-DMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQ 63

Query: 504  DVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKL 683
            D IAA+  FF    + + +N T +ALIPK D +  + D+RPI+CCNV+YKVI+KI+A++L
Sbjct: 64   DFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRL 123

Query: 684  ESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWS 863
            + ++P  I   QSAF+  R + +N+ LA E++++Y +  ISPRCA+K+D+ KA+D++ W 
Sbjct: 124  KVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQ 183

Query: 864  FLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLC 1043
            FL   L  L FP  F  W+  C+S+A++S+ +NG L G F  KRGLRQG  +SP LF++C
Sbjct: 184  FLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVIC 243

Query: 1044 MEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKN 1223
            M  LS ++ V        YHP+C+ L +THL FADDLM+F  G   SV+ +I+   +F  
Sbjct: 244  MNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAG 303

Query: 1224 ASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLY 1403
             SGL ++  KS L+ AG+     +NI +   F  G LPVRYLG+PL  +++    Y+PL 
Sbjct: 304  KSGLHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLL 363

Query: 1404 DRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            D++ S I+ WTA SLSYAGRL LI SV+  +  FW+  + LP   I  I +L
Sbjct: 364  DKVRSKISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKL 415


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  357 bits (915), Expect = 1e-95
 Identities = 193/502 (38%), Positives = 287/502 (57%), Gaps = 3/502 (0%)
 Frame = +3

Query: 63   ELKAKETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKT 242
            E + K   L  AE SF  QK++  +    D N K+FH +    +    ++++   +G   
Sbjct: 336  EAERKWHILTAAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLV 395

Query: 243  SSFDELSKAFVNYFKNLFGTSLQTCPV---DLQTLQTGPCIDEDDFSLLSSPITPQAIKL 413
             S + +     +YF +L G  +    +   D+  L +  C        L S  + + I+ 
Sbjct: 396  DSQEGILDLCASYFGSLLGDEVDPYLMEQNDMNLLLSYRC-SPAQVCELESTFSNEDIRA 454

Query: 414  ALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKT 593
            ALF +   +S GPDGF++ FF  SW IVG +V  A+ EFF S  +L+Q N T I LIPK 
Sbjct: 455  ALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKI 514

Query: 594  DHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQE 773
             +    +DFRPI+C N +YKVI ++L  +L+ ++  +I  AQSAF+ GR++ +N+ LA +
Sbjct: 515  VNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATD 574

Query: 774  IIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSI 953
            ++  Y    ISPR  +KVDLKKA+D++ W F+   L  L  P  FI+W+ +C+S+ ++++
Sbjct: 575  LVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTV 634

Query: 954  CINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITH 1133
             ING   G F   +GLRQGDP+SP LF+L ME  S LL  R  +    YHP+   L I+H
Sbjct: 635  SINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISH 694

Query: 1134 LAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLL 1313
            L FADD+M+F  G   S+  + + L+DF + SGL VN  KS+L+ AG +     N +   
Sbjct: 695  LMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAG-LNQLESNANAAY 753

Query: 1314 NFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQG 1493
             FP+GTLP+RYLG+PL  ++L +  Y PL ++I +    W    LS+AGR+ LI SV+ G
Sbjct: 754  GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFG 813

Query: 1494 VECFWLQIFPLPITVIDRINRL 1559
               FW+  F LP   I RI  L
Sbjct: 814  SINFWMSTFLLPKGCIKRIESL 835


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  353 bits (907), Expect = 9e-95
 Identities = 186/474 (39%), Positives = 279/474 (58%), Gaps = 8/474 (1%)
 Frame = +3

Query: 162  KFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPVD----- 326
            K FH  V     +  +  +   DG      D + +A     +  F   LQ  P D     
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEA-----EKFFKEFLQLIPEDFVGVE 76

Query: 327  ---LQTLQTGPCIDEDDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIV 497
               LQ L    C + D+  +L+  ++ + IK  LF +  ++SPGPDG++S F+K +WDI+
Sbjct: 77   VRELQDLLQFRCTNSDN-EMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDII 135

Query: 498  GNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILAS 677
            G +    V  FF    + + IN   +ALIPK   +  + D+RPI+CCNV+YKVI+KI+A+
Sbjct: 136  GQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIAN 195

Query: 678  KLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTIS 857
            +L+ ++P+ I   QSAF+  R + +N+ LA E++++Y +  IS RCAIK+D+ KA+D++ 
Sbjct: 196  RLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQ 255

Query: 858  WSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFL 1037
            WSFL   L  + F P FI W+  C+++AS+S+ +NG L G F  KRGLRQG  +SP LF+
Sbjct: 256  WSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFV 315

Query: 1038 LCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDF 1217
            +CM+ LS++L        F +HP+C+ L +THL+FADDLM+ S G   S++ +++  ++F
Sbjct: 316  ICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEF 375

Query: 1218 KNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAP 1397
               SGL ++  KS L+ AG+       I     F +G LPVRYLG+PL  +RL    Y+P
Sbjct: 376  CKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSP 435

Query: 1398 LYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            L ++I   I  WT    S+AGR  LIKSVL  +  FWL  F LP   I  I++L
Sbjct: 436  LLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKL 489


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  353 bits (907), Expect = 9e-95
 Identities = 190/495 (38%), Positives = 284/495 (57%), Gaps = 3/495 (0%)
 Frame = +3

Query: 84   FLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELS 263
            F A A  SF  QK++  +L+  D N +FFH  V  +     +  +  +DG +  + D++ 
Sbjct: 342  FFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIK 401

Query: 264  KAFVNYFKNLFGT-SLQTCPVDLQTLQTGPCIDEDDF--SLLSSPITPQAIKLALFDIED 434
               + Y+ +L G  S    P  ++ ++       D F  S L++  + + I   LF +  
Sbjct: 402  GMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPR 461

Query: 435  ERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVA 614
             ++PGPDGF   FF ++W IV + V+AA+ EFF S  + R  N TAI LIPK   +  + 
Sbjct: 462  NKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLT 521

Query: 615  DFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYAR 794
             FRP+ACC  +YKVIT+I++ +L+  I + +   Q  FI GR + +N+ LA E++ N+  
Sbjct: 522  QFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEA 581

Query: 795  VRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQ 974
               + R  ++VD+ KAYD ++W FL  +L  L  P +FI W+  C+SSASYSI  NG L 
Sbjct: 582  DGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELI 641

Query: 975  GKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDL 1154
            G F GK+G+RQGDPMS  LF+L M+ LS+ L +      F  HP C A  ITHL+FADD+
Sbjct: 642  GFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDV 701

Query: 1155 MLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTL 1334
            ++FS G   S+  ++  L+DF+  SGL +N  K+ L   G    +  ++ + L    G+L
Sbjct: 702  LVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSL 761

Query: 1335 PVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQ 1514
            PVRYLGVPL +Q++    Y PL DRI S    WTA  LS+AGRL L+KSV+     FW  
Sbjct: 762  PVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWAS 821

Query: 1515 IFPLPITVIDRINRL 1559
            +F  P   + ++ ++
Sbjct: 822  VFIFPNQCLQKLEQM 836


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  351 bits (900), Expect = 6e-94
 Identities = 195/520 (37%), Positives = 297/520 (57%), Gaps = 12/520 (2%)
 Frame = +3

Query: 36   NSALCESVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQM 209
            N ++  +  EL+A  K   LAKAE SF  QK+   +L   D N  +FH +         +
Sbjct: 322  NPSVVHATLELEATRKWQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTI 381

Query: 210  NSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPV---------DLQTLQTGPCIDE 362
            N +I + G +  +   + +    +  N F + L  C V         D+  L +  C   
Sbjct: 382  NFLIDDFGERIETQQGIKEGIKEHSCNFFESLL--CGVEGENSLAQSDMNLLLSFRC-SV 438

Query: 363  DDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSS 542
            D  + L    +   I+ A F +   ++ GPDG+SS FFK  W +VG +V  AV EFF S 
Sbjct: 439  DQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSG 498

Query: 543  KILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQS 722
            ++L+Q N T + LIPK  +S  + DFRPI+C N +YKVI K+L S+L+ ++ ++I P+QS
Sbjct: 499  QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558

Query: 723  AFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPP 902
            AF+ GR +++N+ LA EI+  Y    IS R  +KVDL+KA+D++ W F+      L  P 
Sbjct: 559  AFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPE 618

Query: 903  IFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTN 1082
             F+ W+ +C+S+  +S+ +NGS  G F   +GLRQGDP+SP LF+L ME  S LLK R +
Sbjct: 619  KFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFD 678

Query: 1083 TLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNL 1262
                +YHP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  K+NL
Sbjct: 679  AGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNL 738

Query: 1263 FTAGIIGDKLDNIH-NLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTA 1439
            + AG   D+++ +  +   FP+ TLP+RYLG+PL +++L ++ Y      +      W  
Sbjct: 739  YLAGT--DEVEALAISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAV 791

Query: 1440 NSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
             SLS+AGR+ LI SV+ G+  FW+  F L +  + +I  L
Sbjct: 792  KSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESL 831


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  350 bits (898), Expect = 9e-94
 Identities = 195/520 (37%), Positives = 296/520 (56%), Gaps = 12/520 (2%)
 Frame = +3

Query: 36   NSALCESVKELKA--KETFLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQM 209
            N ++  +  EL+A  K   LAKAE SF  QK+   +L   D N  +FH +         +
Sbjct: 322  NPSVVHATLELEATRKWQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTI 381

Query: 210  NSVILEDGSKTSSFDELSKAFVNYFKNLFGTSLQTCPV---------DLQTLQTGPCIDE 362
            N +I + G +  +   + +    +  N F + L  C V         D+  L +  C   
Sbjct: 382  NFLIDDFGERIETQQGIKEGIKEHSCNFFESLL--CGVEGENSLAQSDMNLLLSFRC-SV 438

Query: 363  DDFSLLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSS 542
            D  + L    +   I+ A F +   ++ GPDG+SS FFK  W +VG +V  AV EFF S 
Sbjct: 439  DQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSG 498

Query: 543  KILRQINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQS 722
            ++L+Q N T + LIPK  +S  + DFRPI+C N +YKVI K+L S+L+ ++ ++I P+QS
Sbjct: 499  QLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQS 558

Query: 723  AFISGRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPP 902
            AF+ GR +++N+ LA EI+  Y    IS R  +KVDL+KA+D++ W F+      L  P 
Sbjct: 559  AFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPE 618

Query: 903  IFISWVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTN 1082
             F+ W+ +C+S+  +S+ +NGS  G F   +GLRQGDP+SP LF+L ME  S LLK R +
Sbjct: 619  KFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFD 678

Query: 1083 TLTFKYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNL 1262
                 YHP+   L I+HL FADD+M+F  G   S+  + + L+DF + SGL VN  K+NL
Sbjct: 679  AGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNL 738

Query: 1263 FTAGIIGDKLDNIH-NLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTA 1439
            + AG   D+++ +  +   FP+ TLP+RYLG+PL +++L ++ Y      +      W  
Sbjct: 739  YLAGT--DEVEALAISHYGFPISTLPIRYLGLPLMSRKLKISEY-----ELVKRFRSWAV 791

Query: 1440 NSLSYAGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
             SLS+AGR+ LI SV+ G+  FW+  F L +  + +I  L
Sbjct: 792  KSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESL 831


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  345 bits (886), Expect = 2e-92
 Identities = 166/395 (42%), Positives = 255/395 (64%)
 Frame = +3

Query: 375  LLSSPITPQAIKLALFDIEDERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILR 554
            +L+  ++ + IK  LF + +++SPGPDGF+S FFK+SW+I+G + I A+  FF    + +
Sbjct: 1    MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60

Query: 555  QINHTAIALIPKTDHSPTVADFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFIS 734
             +N T +ALIPK   S  + D+RPI+CCNV+YKVI+KILA++L+ ++P+ I   QS+F+ 
Sbjct: 61   GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120

Query: 735  GRNITDNIFLAQEIIRNYARVRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFIS 914
             R + +N+ LA +++++Y +  IS RCAIK+D+ KA D++ WSFL   L  + FP +FI 
Sbjct: 121  DRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIH 180

Query: 915  WVMECVSSASYSICINGSLQGKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTF 1094
            W+  C+++ S+S+ +NG L G F   RGLRQG  +SP LF++CM+ LS+LL         
Sbjct: 181  WIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRI 240

Query: 1095 KYHPRCEALKITHLAFADDLMLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAG 1274
             YHP C+ + +THL+FADDLM+ + G   S++ +I+  + F   SGL ++  KS +F+AG
Sbjct: 241  GYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAG 300

Query: 1275 IIGDKLDNIHNLLNFPLGTLPVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSY 1454
            +       +H    F +G LP+RYLG+PL  +RL+   YAPL ++I   I  W++  LS+
Sbjct: 301  LSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSF 360

Query: 1455 AGRLLLIKSVLQGVECFWLQIFPLPITVIDRINRL 1559
            AGR  LI S++     FWL  F LP   I  I +L
Sbjct: 361  AGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKL 395


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  338 bits (866), Expect = 5e-90
 Identities = 183/467 (39%), Positives = 270/467 (57%), Gaps = 3/467 (0%)
 Frame = +3

Query: 84   FLAKAERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELS 263
            F A A  SF  QK++  +L+  D N +FFH  V  +     +  +  +DG +  + D++ 
Sbjct: 385  FFAAALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIK 444

Query: 264  KAFVNYFKNLFGT-SLQTCPVDLQTLQTGPCIDEDDF--SLLSSPITPQAIKLALFDIED 434
               + Y+ +L G  S    P  ++ ++       D F  S L++  + + I   LF +  
Sbjct: 445  GMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPR 504

Query: 435  ERSPGPDGFSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVA 614
             ++PGPDGF   FF ++W IV + V+AA+ EFF S  + R  N TAI LIPK   +  + 
Sbjct: 505  NKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLT 564

Query: 615  DFRPIACCNVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYAR 794
             FRP+ACC  +YKVIT+I++ +L+  I + +   Q  FI GR + +N+ LA E++ N+  
Sbjct: 565  QFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEA 624

Query: 795  VRISPRCAIKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQ 974
               + R  ++VD+ KAYD ++W FL  +L  L  P +FI W+  C+SSASYSI  NG L 
Sbjct: 625  DGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELI 684

Query: 975  GKFPGKRGLRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDL 1154
            G F GK+G+RQGDPMS  LF+L M+ LS+ L +      F  HP C A  ITHL+FADD+
Sbjct: 685  GFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDV 744

Query: 1155 MLFSRGDLPSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTL 1334
            ++FS G   S+  ++  L+DF+  SGL +N  K+ L   G    +  ++ + L    G+L
Sbjct: 745  LVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSL 804

Query: 1335 PVRYLGVPLAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLI 1475
            PVRYLGVPL +Q++    Y PL DRI S    WTA  LS+AGRL L+
Sbjct: 805  PVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLL 851


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  337 bits (864), Expect = 8e-90
 Identities = 179/487 (36%), Positives = 268/487 (55%)
 Frame = +3

Query: 99   ERSFLSQKAKCDFLNNSDRNNKFFHSIVKRNSLRKQMNSVILEDGSKTSSFDELSKAFVN 278
            E  +L QK+K  +L+  D+NNK+FH+ VK    R  MNS+                    
Sbjct: 557  EEGYLQQKSKLHWLDVGDKNNKYFHNSVKA---RVAMNSIR------------------- 594

Query: 279  YFKNLFGTSLQTCPVDLQTLQTGPCIDEDDFSLLSSPITPQAIKLALFDIEDERSPGPDG 458
                           ++Q      C   DD                    E  +SPGPDG
Sbjct: 595  ---------------EIQCTDGRVCTSHDDIKE-----------------EAHKSPGPDG 622

Query: 459  FSSGFFKKSWDIVGNDVIAAVSEFFDSSKILRQINHTAIALIPKTDHSPTVADFRPIACC 638
            ++  FFK +W ++G D++ A+  FF    + + IN T +ALI K      + D+RPI+CC
Sbjct: 623  YTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCC 682

Query: 639  NVVYKVITKILASKLESVIPKLIDPAQSAFISGRNITDNIFLAQEIIRNYARVRISPRCA 818
            NV+YK+++K++A++L+ ++P  I P QSAFI  R + +N+ LA E++++Y +  IS R A
Sbjct: 683  NVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSA 742

Query: 819  IKVDLKKAYDTISWSFLEQVLNGLGFPPIFISWVMECVSSASYSICINGSLQGKFPGKRG 998
            +K+D+ KA+D + W FL  VL  +  P +FI W+  C+ +AS+S+ +NG L G F  +RG
Sbjct: 743  LKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERG 802

Query: 999  LRQGDPMSPALFLLCMEYLSRLLKVRTNTLTFKYHPRCEALKITHLAFADDLMLFSRGDL 1178
            LRQG  +SP L+++CM  LS +L          YHPRC  + +THL FADD+M+FS G  
Sbjct: 803  LRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTS 862

Query: 1179 PSVKILIDCLNDFKNASGLDVNSFKSNLFTAGIIGDKLDNIHNLLNFPLGTLPVRYLGVP 1358
             S++  +     F   S L ++  KS +F AGI  +   +I     F LGTLPV+YLG+P
Sbjct: 863  KSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLP 922

Query: 1359 LAAQRLNVNHYAPLYDRIASYINKWTANSLSYAGRLLLIKSVLQGVECFWLQIFPLPITV 1538
            L  +R+  + Y PL ++I + I  WT   LS+AGRL LIKSVL  +  FWL +F LP   
Sbjct: 923  LLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKAC 982

Query: 1539 IDRINRL 1559
            +  I ++
Sbjct: 983  LQEIEKM 989