BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00005939
         (1523 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   213   2e-52
emb|CAN78706.1| hypothetical protein VITISV_028658 [Vitis vinifera]   207   1e-50
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   204   1e-49
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]   194   6e-47
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   187   1e-44
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   186   2e-44
gb|ACN32036.1| unknown [Zea mays]                                     185   4e-44
gb|ACL54615.1| unknown [Zea mays]                                     184   1e-43
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]   174   7e-41
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   157   1e-40
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   165   5e-38
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         164   7e-38
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     162   3e-37
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G...   159   2e-36
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   159   3e-36
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   158   5e-36
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...   158   7e-36
emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]   155   3e-35
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [...   155   6e-35
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   155   6e-35

>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  213 bits (542), Expect = 2e-52
 Identities = 121/363 (33%), Positives = 189/363 (52%), Gaps = 9/363 (2%)
 Frame = +3

Query: 207  HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQW 386
            +S+ VKL   N+++W+  I   +   G E ++DG+   P K +   E     +NPA++ W
Sbjct: 31   YSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSXCPEKELRPXE-----INPAFVAW 85

Query: 387  QRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKK 566
            +RQD+                 ++G ++S   W  LE  FSS S ARIMQ +++ Q+ KK
Sbjct: 86   RRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKK 145

Query: 567  NSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLR 746
             S+S+ +Y+ K+KG  D+LAA+G  ++E+DQ+M++L GLGS+Y+AVV +I  + +  +L 
Sbjct: 146  GSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLE 205

Query: 747  DVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQ---------GRNAQTPQYNKXXXXX 899
             V S+LL++E RLE    I    ++   + ++            GR       N      
Sbjct: 206  AVHSMLLAFEQRLEQQGSIEQLPAMSANYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGR 265

Query: 900  XXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNK 1079
                          S   R  CQ+CG   HT   CY+RF+  F    N+ +  S   GN 
Sbjct: 266  GRGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVS-NSGNS 324

Query: 1080 NFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDIS 1259
            N     AM+A+++  ++ NWY DSGA+HH+T + +NL  A  Y G  K+ IGNG  L IS
Sbjct: 325  N--SMPAMVASSNNLADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGKHLTIS 382

Query: 1260 HVG 1268
            + G
Sbjct: 383  NTG 385


>emb|CAN78706.1| hypothetical protein VITISV_028658 [Vitis vinifera]
          Length = 780

 Score =  207 bits (526), Expect = 1e-50
 Identities = 122/389 (31%), Positives = 197/389 (50%), Gaps = 29/389 (7%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 392
            + ++L D+NFL+WK  I   ++GYGLEG+L G+   P K++  +  G+L  NP +  +QR
Sbjct: 43   ITMRLEDDNFLMWKYQIENVVRGYGLEGFLFGTEQVPPKMVN-DGTGILVPNPKFRDYQR 101

Query: 393  QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 572
            QD                  VVG S++FE+W  +  NF+S S+A++M YK Q+  LKK+ 
Sbjct: 102  QDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISHNFNSQSSAKVMFYKSQMHMLKKDG 161

Query: 573  LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 752
            L++R+YL+K+K YCD LA  GHK+++ D ++ ++ GLG EY++V+  I SK  + +L+ V
Sbjct: 162  LTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYESVIAVISSKKSSPSLQYV 221

Query: 753  TSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXXXXXXXXX 932
            TS L+++E R+              AH  +        T QY+                 
Sbjct: 222  TSTLIAHEGRI--------------AHKISSNDLSVNYTSQYSN---------------R 252

Query: 933  XXXSFGNRIHCQICGYSNHT---ADKCYNRFNPDF---------TPNTNSQSQRSFTEG- 1073
               S  N       G+ N      ++    +NP+F         TP       R+   G 
Sbjct: 253  GSSSSWNSNGYPSSGFQNRNQFGGNQIIRGYNPNFHGNMPANGPTPGVLGSGARNGASGS 312

Query: 1074 ----------------NKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAAD 1205
                            ++++++  A++AT +       +PDSGAT+H+T+D  NLN   +
Sbjct: 313  ISSVGNVNLTEYDAQEDQDYSKMEAIVATPEDLQNCCSFPDSGATNHVTHDLGNLNSGVE 372

Query: 1206 YNGHGKLQIGNGAGLDISHVGSSHKGNSS 1292
            YNG+ K+ +GNG G +ISH+G S   +SS
Sbjct: 373  YNGNSKIHMGNGTGPEISHIGLSIFPSSS 401


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  204 bits (518), Expect = 1e-49
 Identities = 122/362 (33%), Positives = 186/362 (51%), Gaps = 10/362 (2%)
 Frame = +3

Query: 207  HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTK-LIPAEEEGLLKVNPAYIQ 383
            +S+ VKL   N+++W+  I   +   G E ++DG+   P K L P E      +NPA++ 
Sbjct: 31   YSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEKELRPGE------INPAFVA 84

Query: 384  WQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLK 563
             +RQD+                 ++G ++S   W  LE  FSS S ARIMQ  ++ Q+ K
Sbjct: 85   XRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTK 144

Query: 564  KNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNL 743
            K S+S+ +Y+ K+KG  D+LAA+G  ++E+DQ+M++L GLGS+Y+AVV +I  + +  +L
Sbjct: 145  KGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISL 204

Query: 744  RDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQ---------GRNAQTPQYNKXXXX 896
              V S+LL++E RLE    I    ++   + +             GR       N     
Sbjct: 205  EAVHSMLLAFEQRLEQQGSIEQLPAMSANYASXSNNRGGGRKYNGGRGPNFMMTNSNFRG 264

Query: 897  XXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGN 1076
                           S   R  CQ+CG   HT   CY+RF+  F    N+ +  S   GN
Sbjct: 265  RGRGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVS-NSGN 323

Query: 1077 KNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDI 1256
             N     AM+A ++  ++ NWY DSGA+HH+T + +NL  A  Y G  K+ IGNG  L I
Sbjct: 324  SN--XMPAMVAXSNNXADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNGKHLTI 381

Query: 1257 SH 1262
            S+
Sbjct: 382  SN 383


>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
          Length = 1282

 Score =  194 bits (494), Expect = 6e-47
 Identities = 113/355 (31%), Positives = 183/355 (51%), Gaps = 11/355 (3%)
 Frame = +3

Query: 207  HSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQW 386
            H++ VKL   N+++WK  I   +   G E ++DGS   P K + +   GL  +NPA++ W
Sbjct: 31   HTLPVKLDRTNYILWKSQIDNVVFANGFEDFIDGSSICPDKELXS---GL--INPAFVAW 85

Query: 387  QRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKK 566
            +RQD+                 ++G ++    W  LE  FSS S ARIMQ +++LQ+ KK
Sbjct: 86   RRQDRTILSWLYSSLTPAXMAQIIGHNSXHSAWNALEKTFSSSSRARIMQLRLELQSTKK 145

Query: 567  NSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLR 746
             S S+ +Y+ K+KG  D+LAA+G  ++E+DQVM++L GLGS+Y+AVV +I  + +  ++ 
Sbjct: 146  GSXSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLDGLGSDYNAVVTAINIRDDKISIE 205

Query: 747  DVTSLLLSYESRLEAAALINTDGSLPTAHLATQT-----------QGRNAQTPQYNKXXX 893
             V S+LL +E RLE  + I     +   + ++             +G+N      N    
Sbjct: 206  AVHSMLLVFEHRLEQQSSIEQFSPISANYASSSNSRGGGRRYNGGRGQNHTPNTSNYTYR 265

Query: 894  XXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEG 1073
                            +   +  CQ+CG   +T   CY+RF+  +    +SQS  +    
Sbjct: 266  GSGRGGRYGQNERHNSNSSEKPQCQLCGKFGYTVQICYHRFDISY---QSSQSSNTSPSN 322

Query: 1074 NKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGN 1238
              N     AM+A+++  ++  WY DSGA+HH+T    NL  ++ Y G  K+ IGN
Sbjct: 323  ASNPNSIPAMVASSNYLADDTWYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGN 377


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  187 bits (475), Expect = 1e-44
 Identities = 113/387 (29%), Positives = 186/387 (48%), Gaps = 28/387 (7%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 392
            V+ KL + NFL+ ++ I TTL+G+ L+ +L  +   P++ + +++E    VNP +  W++
Sbjct: 19   VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78

Query: 393  QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 572
            Q Q                 +V   TS ++WK LE  F++   A++ Q+K QL N KK  
Sbjct: 79   QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138

Query: 573  LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 752
            LS+ +YL KI+   D LA VGHK++ +D +  +  GL  +Y+  ++S+ S+ +   + ++
Sbjct: 139  LSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEI 198

Query: 753  TSLLLSYESRLEAAALINTDGSLPTAHLAT-------------QTQGRNAQTPQYN---- 881
             +LLL+ ESR+E    I    +   AHL T              T+  N + P ++    
Sbjct: 199  EALLLAQESRIEKNIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNGM 258

Query: 882  KXXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRS 1061
            +                      N+  CQ+CG   H   +CY RF+  FT  +  Q  R 
Sbjct: 259  QHFRGNFTQQGRGRHGRGSWKGNNKPQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGNRP 318

Query: 1062 FTEGNKNFAQS-----------SAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADY 1208
              +GN                 S    T +   + NWYPDSGATHH+T + +NL   + +
Sbjct: 319  --QGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQF 376

Query: 1209 NGHGKLQIGNGAGLDISHVGSSHKGNS 1289
                ++ +GNG GL I H+G +   +S
Sbjct: 377  PSSDEVFVGNGKGLPIHHIGHTSFSSS 403


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  186 bits (473), Expect = 2e-44
 Identities = 118/392 (30%), Positives = 192/392 (48%), Gaps = 42/392 (10%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQR 392
            + ++L D+NFL+WK  I   ++GYGLEG+L G+   P K++  ++ G+L  NP +  +QR
Sbjct: 246  ITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMV-TDKIGVLVPNPKFRDYQR 304

Query: 393  QDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNS 572
            QD                  VVG S++FE+W  +  NF+S S+A++M YK Q+Q LKK+ 
Sbjct: 305  QDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVMFYKSQMQMLKKDG 364

Query: 573  LSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDV 752
            L++R+YL+K+K YCD LA  GHK+++ D ++ ++ GLG EY+ V+  I SK  + +L+ V
Sbjct: 365  LTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYEXVIAVIXSKKSSPSLQYV 424

Query: 753  TSLLLSYESRLEAAALINTDGSL----------------PTAHLATQTQGRNAQTPQYNK 884
            TS L+++E R+ A  + + D S                    + ++  Q RN    Q+  
Sbjct: 425  TSTLIAHEGRI-AHKISSNDLSXNYTSQYSNRGXSSSWNSNGYPSSGFQNRN----QFGG 479

Query: 885  XXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDF---------TPN 1037
                                 G +  CQ C    H   +C+ R++P+F         TP 
Sbjct: 480  NXXTRGSFVXNRGRGRGRAQGGIKPQCQXCNKFGHXVHRCFYRYDPNFHGNMPXNGXTPG 539

Query: 1038 TNSQSQRSFTEG-----------------NKNFAQSSAMIATTDQGSEVNWYPDSGATHH 1166
                  R+   G                 ++++++  AM+AT +      W+PDSGAT  
Sbjct: 540  XLGSXARNGASGSISSAGNVNXTEYDAQEBQDYSEMEAMVATXEDLQNCCWFPDSGAT-- 597

Query: 1167 ITNDFSNLNFAADYNGHGKLQIGNGAGLDISH 1262
               +  NL+         K   G  +GL +S+
Sbjct: 598  ---NXGNLHKGLYQFNLSKKLFGKASGLSLSN 626


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  185 bits (470), Expect = 4e-44
 Identities = 114/370 (30%), Positives = 178/370 (48%), Gaps = 9/370 (2%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLI---PAEEEG--LLKVNPAY 377
            V++KL  EN+L+W   +   L+  GL G++DGS+  P + +   PAE  G   + +NP +
Sbjct: 26   VSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAINPEF 85

Query: 378  IQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQN 557
              W  QDQ                TVV  +T+   W  LE  ++S S ARIMQ ++QL  
Sbjct: 86   TSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRARIMQIRMQLAT 145

Query: 558  LKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENC 737
            ++K  L+  EY  K+K   D LAAVG ++ + + + ++L GL ++YD++V SI ++ +  
Sbjct: 146  IQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRPDTY 205

Query: 738  NLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQ----TQGRNAQTPQYNKXXXXXXX 905
             + DV + LLS+E+R E    +    S+  A+          G+N +  +          
Sbjct: 206  TISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGGRGRGGRSQPGR 265

Query: 906  XXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNF 1085
                        +  +   CQICG  NH A +C++RF+  +   +  +            
Sbjct: 266  GNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAYQAESTVK------------ 313

Query: 1086 AQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHV 1265
                A  AT +   + NWY DSGAT HIT+D   L     Y G  K+Q+ NGA       
Sbjct: 314  ---QAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGA------- 363

Query: 1266 GSSHKGNSSQ 1295
            GSSH+ +SSQ
Sbjct: 364  GSSHEASSSQ 373


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  184 bits (466), Expect = 1e-43
 Identities = 113/370 (30%), Positives = 177/370 (47%), Gaps = 9/370 (2%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLI---PAEEEG--LLKVNPAY 377
            V++KL  EN+L+W   +   L+  GL G++DGS+  P + +   PAE  G   + +NP +
Sbjct: 26   VSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAINPEF 85

Query: 378  IQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQN 557
              W  QDQ                TVV  +T+   W  LE  ++S S  RIMQ ++QL  
Sbjct: 86   TSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRVRIMQIRMQLAT 145

Query: 558  LKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENC 737
            ++K  L+  EY  K+K   D LAAVG ++ + + + ++L GL ++YD++V SI ++ +  
Sbjct: 146  IQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRPDTY 205

Query: 738  NLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQ----TQGRNAQTPQYNKXXXXXXX 905
             + DV + LLS+E+R E    +    S+  A+          G+N +  +          
Sbjct: 206  TISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQNGRGGRGRGGRSQPGR 265

Query: 906  XXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNF 1085
                        +  +   CQICG  NH A +C++RF+  +   +  +            
Sbjct: 266  GNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAYQAESTVK------------ 313

Query: 1086 AQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHV 1265
                A  AT +   + NWY DSGAT HIT+D   L     Y G  K+Q+ NGA       
Sbjct: 314  ---QAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVANGA------- 363

Query: 1266 GSSHKGNSSQ 1295
            GSSH+ +SSQ
Sbjct: 364  GSSHEASSSQ 373


>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score =  174 bits (442), Expect = 7e-41
 Identities = 102/285 (35%), Positives = 157/285 (55%), Gaps = 12/285 (4%)
 Frame = +3

Query: 453  VVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNSLSVREYLSKIKGYCDALAAV 632
            ++G ++S   W  LE  FSS S ARIMQ +++LQ+ KK SLS+ +Y+ K+KG  D+LAA+
Sbjct: 4    IIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAI 63

Query: 633  GHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDVTSLLLSYESRLEAAALINTD 812
            G  ++E+DQVM++L GLGS+Y+AVV +I  K +  ++  V S+LL++E RLE  + I   
Sbjct: 64   GEPVSEQDQVMNLLGGLGSDYNAVVTAINIKDDKISIEVVHSMLLAFEHRLEQQSSIEQF 123

Query: 813  GSLPTAHLATQTQGRNA-----------QTPQYNKXXXXXXXXXXXXXXXXXXXSFGN-R 956
             S+ +A+ A+ +  R +            TP  +                    S  + +
Sbjct: 124  SSI-SANYASSSNSRGSGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGQNGRHNSNSSEK 182

Query: 957  IHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVN 1136
              CQ+CG   HT   CY++F+  +    +SQS  +      N     AM+A+++  +E  
Sbjct: 183  PQCQLCGKFGHTVQICYHKFDISYQ---SSQSSNTSPSNASNPNSIPAMVASSNNLAEDT 239

Query: 1137 WYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISHVGS 1271
            WY DSGA HH+T    NL  ++ Y G  K+ IGNG  L IS+ GS
Sbjct: 240  WYLDSGANHHLTQSVGNLTSSSPYTGIDKVTIGNGKHLSISNTGS 284


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  157 bits (398), Expect(2) = 1e-40
 Identities = 106/360 (29%), Positives = 165/360 (45%), Gaps = 13/360 (3%)
 Frame = +3

Query: 204  GHSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSIS--TPTKLIPAEEEGLLKVNPAY 377
            G +V  KL   N+LIWK  +   ++G  L+GYL G+I   +PT +I   ++ +   NPA+
Sbjct: 15   GITVTEKLGKGNYLIWKVQVLAVIRGARLDGYLTGAIRAPSPTTIIKKSDKDVEVPNPAF 74

Query: 378  IQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQN 557
             +W   DQ                 V    ++  +W  +E  FSS + AR +  KI L N
Sbjct: 75   DEWIANDQQVLGYLLTTMSRDVLSKVATCGSAAALWSVVEGMFSSATRARSINTKITLTN 134

Query: 558  LKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENC 737
             KK  LSV EY+ KI+   D LA     ++E D +  ++ GL  +++ ++ S++SK+E+ 
Sbjct: 135  TKKGDLSVAEYVGKIRALADELATSDKLVDEEDLISFIIVGLDEDFEPIISSLVSKSEHV 194

Query: 738  NLRDVTSLLLSYESRLEAAALINTDGSLPTAH----LATQTQGR------NAQTPQYNK- 884
            +L +  S LLS+E R++    +  + S   AH       Q QGR      N Q  Q  + 
Sbjct: 195  SLGEAYSQLLSFEQRMK----LRQEHSANLAHRGRGRGQQQQGRGCGNQGNQQQQQCGRG 250

Query: 885  XXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSF 1064
                               +  NR  CQ+C    HT   C+ R++ DF P          
Sbjct: 251  GKNCGRGRGNTSYQRQGGNNTDNRPKCQLCYKRGHTVIDCWYRYDEDFVP---------- 300

Query: 1065 TEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGA 1244
               ++ +A ++A       G + NWY D+GAT HIT +   L     Y G  ++Q  NGA
Sbjct: 301  ---DEKYAGTAA-----SYGVDSNWYVDTGATDHITGELEKLTIRDKYKGQDQVQAANGA 352



 Score = 37.7 bits (86), Expect(2) = 1e-40
 Identities = 26/83 (31%), Positives = 33/83 (39%)
 Frame = +1

Query: 1267 DQVTKETLLKGDLKNGLYQFKLLKHCLKHSPPQFQSKTHTLPSKPQVRNISSFFSYVASP 1446
            DQ  KE LL+G  +  L+           SP   Q K     + P               
Sbjct: 353  DQAMKEILLRGRCRGRLFPLP------SSSPSAHQDKEALAATTP--------------- 391

Query: 1447 MKSLELWHKRLGHPSYDVTKKAL 1515
              SLE WH RLGHPSY + +K +
Sbjct: 392  --SLERWHCRLGHPSYAIAEKVV 412


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  165 bits (417), Expect = 5e-38
 Identities = 107/376 (28%), Positives = 170/376 (45%), Gaps = 15/376 (3%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDG-SISTPTKLIPAEEEGLLKVNPAYIQWQ 389
            V+ KLT  N+L+WK  +   ++   L+  L G  I  P  +  A +  +   NPAY +W 
Sbjct: 20   VSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWI 79

Query: 390  RQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKN 569
             +DQ                +VV  STS  +W  L   +SSHS AR +  +I L   KK 
Sbjct: 80   ARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKG 139

Query: 570  SLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRD 749
            + SV EY +K++G+ D L A G  +++ + V  +L+GL  +++ +V +++++++     D
Sbjct: 140  ASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGD 199

Query: 750  VTSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXXXXXXXX 929
            + + LLSYE+R+    L     SL  +    ++ GR     +                  
Sbjct: 200  LYTQLLSYENRMH---LQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSR 256

Query: 930  XXXXSFG--------------NRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFT 1067
                SFG              +R  CQ+C    HTA  C+ RF+ ++ P+          
Sbjct: 257  GGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPD---------- 306

Query: 1068 EGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAG 1247
                   Q SA  A    GS V WY D+GAT HIT D   L     Y G  ++   NG G
Sbjct: 307  -------QRSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTG 359

Query: 1248 LDISHVGSSHKGNSSQ 1295
            + IS++G++    SS+
Sbjct: 360  MTISNIGNAIVPTSSR 375


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  164 bits (416), Expect = 7e-38
 Identities = 117/373 (31%), Positives = 167/373 (44%), Gaps = 18/373 (4%)
 Frame = +3

Query: 210  SVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTP--TKLIPAEEEGLLKVNPAYIQ 383
            SV +KL D N+L+WK    + L    L G+++G ++ P  T+L+  ++      NP Y  
Sbjct: 16   SVTLKLNDSNYLLWKTQFESLLSSQKLIGFVNGVVTPPAQTRLVVNDDVTSEVPNPQYED 75

Query: 384  WQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLK 563
            W   DQ                 V  L+TS +IW  L  NF+  S AR    +  LQ L 
Sbjct: 76   WFCTDQLVRSWLFGTLSEEVLGHVHNLTTSRQIWISLAENFNKSSIAREFSLRRNLQLLT 135

Query: 564  KNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYD---AVVVSIISKTEN 734
            K   S+  Y    K  CD+L+++G  + E  ++   L+GLG EYD    V+ S +SK   
Sbjct: 136  KKDKSLSVYCRDFKIICDSLSSIGKPVEESMKIFGFLNGLGREYDPITTVIQSSLSKLPA 195

Query: 735  CNLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXXX 914
                DV S +  ++S+L++      D      HLA  T+  N+  PQYN           
Sbjct: 196  PTFNDVISEVQGFDSKLQSY----DDTVSVNPHLAFNTERSNSGAPQYNSNSRGRGRSGQ 251

Query: 915  XXXXXXXXX-------------SFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQ 1055
                                  S G R  CQICG   HTA KCYNRF+ ++     +Q+ 
Sbjct: 252  NRGRGGYSTRGRGFSQHQSASPSSGQRPVCQICGRIGHTAIKCYNRFDNNYQSEVPTQA- 310

Query: 1056 RSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIG 1235
                         SA+  + + G E  WYPDS AT HIT   S L  A  Y G+  + +G
Sbjct: 311  ------------FSALRVSDETGKE--WYPDSAATAHITASTSGLQNATTYEGNDAVLVG 356

Query: 1236 NGAGLDISHVGSS 1274
            +G  L I+HVGS+
Sbjct: 357  DGTYLPITHVGST 369


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  162 bits (411), Expect = 3e-37
 Identities = 103/366 (28%), Positives = 163/366 (44%), Gaps = 9/366 (2%)
 Frame = +3

Query: 204  GHSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEE----EGLLKV-N 368
            G +++ KLT  NF +WK HI   + G  +EGYL G+   P+  I  +E    E   KV N
Sbjct: 14   GQAISEKLTKNNFSLWKTHILPVICGARMEGYLTGATQVPSAEIEVKEGEKGEITKKVSN 73

Query: 369  PAYIQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQ 548
            PAY  W   DQ                 V  + T+   WK +    S+ S AR +  +I 
Sbjct: 74   PAYEAWIAADQQVLGFLLSSISKEILIQVANVDTAAHAWKMIVGLLSTQSRARALNTRIA 133

Query: 549  LQNLKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKT 728
            L   +K   SV +Y+SK+K   D +A+ G  +++ +   ++L+GL S+Y+ VV SI+ ++
Sbjct: 134  LATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQVVSSIVGRS 193

Query: 729  ENCNLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQG----RNAQTPQYNKXXXX 896
            E   + +V S LLS+E   +      +  S+ +A+      G     N      N+    
Sbjct: 194  EGVTISEVYSQLLSFEELWQTNGSSGSYSSVNSANHGRNNGGGGNFNNGGGYFSNRGRGG 253

Query: 897  XXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGN 1076
                           +F  R  CQ+C    H    C++ ++  F P+             
Sbjct: 254  GRGDRGGCGRGNGGRNFKPRPTCQLCSKVGHVVADCWHCYDDSFVPD------------- 300

Query: 1077 KNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDI 1256
                  + + A    G + NWY D+GAT HITN+   L     YNG  ++   +G+G+DI
Sbjct: 301  ------ARVAAAASYGVDSNWYVDTGATDHITNELEKLTTRDRYNGKEQIHTASGSGMDI 354

Query: 1257 SHVGSS 1274
             H+G S
Sbjct: 355  KHIGQS 360


>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 572

 Score =  159 bits (403), Expect = 2e-36
 Identities = 94/331 (28%), Positives = 154/331 (46%), Gaps = 2/331 (0%)
 Frame = +3

Query: 288  LEGYLDGSISTP--TKLIPAEEEGLLKVNPAYIQWQRQDQXXXXXXXXXXXXXXXXTVVG 461
            + GY+DG+   P  T +   +++ +   NPA+ +W  Q+Q                 VV 
Sbjct: 1    MAGYIDGTKEEPPATIITKKDDKDVRVTNPAHTEWVAQEQQVLSYLLLSLSRDVLIQVVS 60

Query: 462  LSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNSLSVREYLSKIKGYCDALAAVGHK 641
            + T+  +W  +   F+SHS AR+M  ++ L   KK +L V EY++K++G  D +A+ G K
Sbjct: 61   IPTAVGVWDAISGMFASHSRARVMNTRMALTATKKGNLKVAEYVAKMRGLADDMASAGKK 120

Query: 642  MNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDVTSLLLSYESRLEAAALINTDGSL 821
            +++ D V  +L+GL  ++D VV ++  ++E  ++ ++ S L+++E RLE         S 
Sbjct: 121  LDDDDIVSDILAGLDDDFDPVVSAVAQRSEPISVGELFSQLVTFEQRLELRQ-GGIQSST 179

Query: 822  PTAHLATQTQGRNAQTPQYNKXXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADK 1001
             +A       GR    P   +                     G+   CQ+C    HT  K
Sbjct: 180  NSASRGGNGGGRGHGQPNQGQNLNRGRGGQGRGRGGFTNNQGGDHPKCQLCDKLGHTVVK 239

Query: 1002 CYNRFNPDFTPNTNSQSQRSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDF 1181
            CY RF+  FT                   + SA  AT+  G   NWY D+GAT HIT+D 
Sbjct: 240  CYKRFDASFTGE-----------------EKSAAAATSSYGVGTNWYIDTGATDHITSDL 282

Query: 1182 SNLNFAADYNGHGKLQIGNGAGLDISHVGSS 1274
              L     YNG  ++   +G+G+ I+ +G S
Sbjct: 283  DKLTVREKYNGGDQVHTASGSGMKINQIGQS 313


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  159 bits (402), Expect = 3e-36
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 6/353 (1%)
 Frame = +3

Query: 204  GHSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTP--TKLIPAEEEGLLKVNPAY 377
            G +V  KL+  N+LIWK  +   ++G  L+ YL G+   P  T +I   E+ +   NPA 
Sbjct: 15   GITVTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAV 74

Query: 378  IQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQN 557
             +W   DQ                 V   S++  +W  +E  FSS + AR +  KI L N
Sbjct: 75   DEWIANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTN 134

Query: 558  LKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENC 737
             KK  L + EY+SK++   D LA  G  ++E D + ++++GL  +++ ++ S++SK+E+ 
Sbjct: 135  TKKGDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHV 194

Query: 738  NLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXXXXX 917
            +L +  S LLS+E R++     + + +          +GRN + PQ  +           
Sbjct: 195  SLGEAYSQLLSFEQRMKMRQEHSANLANRGRGRGNPGRGRNNKQPQQQQRGHGGNSRGRG 254

Query: 918  XXXXXXXXSFGN----RIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNF 1085
                      GN    R  CQ+C    HT   C+ R++ DF P+                
Sbjct: 255  RGNNSNQRQGGNGVDYRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKYAG----------- 303

Query: 1086 AQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGA 1244
                    T   G + NWY D+G T H+T +   L     Y G  ++Q  NGA
Sbjct: 304  -------TTASYGVDSNWYVDTGTTDHVTGELEKLTIRDKYKGQDQVQTANGA 349


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  158 bits (400), Expect = 5e-36
 Identities = 110/364 (30%), Positives = 165/364 (45%), Gaps = 10/364 (2%)
 Frame = +3

Query: 213  VAVKLT-DENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEEEGLLKVNPAYIQWQ 389
            ++VKL    N+L WK      L+G+ L G++DG     T+  P +      +NPAY+ WQ
Sbjct: 21   ISVKLDGSHNYLAWKMQFLNLLRGHDLMGFIDG-----TEACPPKHTASGSLNPAYVVWQ 75

Query: 390  RQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKN 569
            ++D                 T+ GL TS ++W  L++ FSS S +RI   K QLQ L + 
Sbjct: 76   KKDVCLLGWILASLSEKLVSTIYGLETSKQVWTALQTRFSSQSRSRISHLKRQLQTLTQG 135

Query: 570  SLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVS--IISKTENCNL 743
            + S  EYL   K   D LAA G  ++++D +  +L GL S Y   V S    S+  +   
Sbjct: 136  TKSCSEYLESAKTLADQLAAAGKPVDDQDLISFLLGGLQSSYTPFVTSFNFASRETDFTF 195

Query: 744  RDVTSLLLSYESRLEA-AALINTDG-----SLPTAHLATQTQGRNAQTPQYNKXXXXXXX 905
             D  + LL YE+ L+   ++ NTDG     +   +   T  Q +    P           
Sbjct: 196  EDFQAELLGYENLLDVNHSVHNTDGPHFAFAANKSKAPTYVQKKGPPLPPTKMQNAASSN 255

Query: 906  XXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNKNF 1085
                           NR  CQICG S HTA  C++RF+  +             +G    
Sbjct: 256  YRSQQTRSTPSQLPNNRPVCQICGKSGHTAIDCFHRFDYSY-------------QGRFPP 302

Query: 1086 AQSSAMIATTDQGSEVN-WYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDISH 1262
               +AM+A T+   +   WY DSGA  HIT+D +NL     +     + +GNG+GL + +
Sbjct: 303  QDLAAMVAETNATFDHQVWYMDSGANAHITSDATNLTHQQPFCESETVTVGNGSGLQVLN 362

Query: 1263 VGSS 1274
             GS+
Sbjct: 363  TGST 366


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
            gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
            protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  158 bits (399), Expect = 7e-36
 Identities = 102/372 (27%), Positives = 170/372 (45%), Gaps = 8/372 (2%)
 Frame = +3

Query: 204  GHSVAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKLIPAEE----EGLLKV-N 368
            G  V+ KLT +N  +W   + T L+G  LEG++ G+   P   +  +E    E  ++V N
Sbjct: 16   GVQVSEKLTKQNHSLWSAQVLTALRGARLEGHVLGTSVPPEAELEQKEGEKGEKTVRVPN 75

Query: 369  PAYIQWQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQ 548
            PAY +W   DQ                 V G  T+   WK +E+ FS+ S A  +  ++ 
Sbjct: 76   PAYGEWFATDQQVLGFLFSSLTREIRSQVAGAPTAAAAWKTIENTFSTRSHAGAINVRLA 135

Query: 549  LQNLKKNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKT 728
            L   +K   +V EY+SK++   D +AA G  +++ + V ++++GL SE+D VV ++I+K 
Sbjct: 136  LTTTQKGQSTVTEYVSKMRALGDEIAATGKPIDDEELVAYIINGLDSEFDPVVEALIAKN 195

Query: 729  ENCNLRDVTSLLLSYESRLEAAALINTDGSLPTAHLATQTQGRNAQTPQYNKXXXXXXXX 908
             +  + +V S LL +E+R++    I T  +  + +  +  QGR    P+           
Sbjct: 196  ASVTVAEVYSQLLGFENRVK----IRTACAATSGNRGSGNQGRGGGNPRGRGTGRGGGGS 251

Query: 909  XXXXXXXXXXXSFG---NRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQSQRSFTEGNK 1079
                         G   NR  CQ+C    H    C++R++ ++ P+              
Sbjct: 252  GGRGGGHGRGNGRGGTDNRPTCQVCHKKGHVVADCWHRYDENYVPD-------------- 297

Query: 1080 NFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNGAGLDIS 1259
               +     AT   G + NWY D+ AT HIT     L     Y G  ++   +G G+DI 
Sbjct: 298  ---EKLGGAATHAYGVDTNWYVDTEATDHITGQLDKLTTREKYKGTDQIHTASGEGMDIQ 354

Query: 1260 HVGSSHKGNSSQ 1295
            H+G S+   SS+
Sbjct: 355  HIGHSYVPTSSR 366


>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score =  155 bits (393), Expect = 3e-35
 Identities = 97/309 (31%), Positives = 148/309 (47%), Gaps = 37/309 (11%)
 Frame = +3

Query: 453  VVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLKKNSLSVREYLSKIKGYCDALAAV 632
            VV   TS E+W  LE  F S+S AR +Q +  LQ+LKK +LS+ +Y+ K++   D L+A 
Sbjct: 5    VVNCQTSAEVWSVLEKLFVSNSKARTLQLRFMLQSLKKGALSINDYVLKMRNIADMLSAS 64

Query: 633  GHKMNERDQVMHVLSGLGSEYDAVVVSIISKTENCNLRDVTSLLLSYESRLEAAALINTD 812
            G  + + D ++++L GLG E++ +VV+I S++E  +L++V  LL S+E RLE  +  +  
Sbjct: 65   GKPVPDEDLILYILGGLGPEFETIVVNITSRSEAISLQEVHYLLQSHEIRLEQLSAASVI 124

Query: 813  GSLPTAHLAT-QTQGRNAQTPQYNKXXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNH 989
               P AH+     Q  N    Q+                        +RI CQ+CG   H
Sbjct: 125  DVPPAAHITIGGVQNSNTNDGQFKSSSSKNFRPRNVCNPQT------SRIVCQLCGKMGH 178

Query: 990  TADKCYNRFNPDFTPNTNSQSQR------------------------------------S 1061
            TA KC++RF+  F    ++Q+Q+                                    S
Sbjct: 179  TAMKCFHRFDVYFQSPPHAQNQQFSSLHQPQQPQLRPPPLHQPQYYSIGPLVPSRPIQNS 238

Query: 1062 FTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQIGNG 1241
              + +       A I   D  S  +W+ DSGATHH+T D + L+    Y+G G + +GNG
Sbjct: 239  HQQLDSTNTSPHAYIVAPDLNSNTSWFVDSGATHHMTTDSNTLDVFDHYSGTGNVVVGNG 298

Query: 1242 AGLDISHVG 1268
              LDIS VG
Sbjct: 299  QTLDISSVG 307


>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
            gi|17104755|gb|AAL34266.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
            gi|51971701|dbj|BAD44515.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
            gi|51971723|dbj|BAD44526.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
            gi|110741320|dbj|BAF02210.1| putative retroelement pol
            polyprotein [Arabidopsis thaliana]
          Length = 405

 Score =  155 bits (391), Expect = 6e-35
 Identities = 105/381 (27%), Positives = 175/381 (45%), Gaps = 21/381 (5%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKL-IPAEEEGLLKV--NPAYIQ 383
            V V LT +N+++WK    + L G GL G++ GSI  P++  + ++ +G      NP Y  
Sbjct: 25   VTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPNPEYYT 84

Query: 384  WQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLK 563
            W + D+                 VV  +TS E+W  + ++F+  S++R+ + + +LQN+ 
Sbjct: 85   WFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRRLQNVS 144

Query: 564  KNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTE---N 734
            K   S+ EYL  +K  CD LA+VG  + E+ ++   L+GLG EY+ +  +I +  +    
Sbjct: 145  KRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDALPG 204

Query: 735  CNLRDVTSLLLSYESRLE------------AAALINTDGSLPTAHLATQTQGR---NAQT 869
             +L DV   L  Y+ RL+            A  +  +D S  + +     +G+   N   
Sbjct: 205  PSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRGKGKSNRGR 264

Query: 870  PQYNKXXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQ 1049
              ++                    S G  + CQICG   H A KC++RFN  +       
Sbjct: 265  NSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSY------- 317

Query: 1050 SQRSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQ 1229
                + E  +  A       T   G+E  W PDS AT H+TN   +L  +  Y+G   + 
Sbjct: 318  ---QYEELPRALAAMRITDITDQHGNE--WLPDSAATAHVTNSPRSLQQSQPYHGSDAVM 372

Query: 1230 IGNGAGLDISHVGSSHKGNSS 1292
            + +G  L I+H GS++  +SS
Sbjct: 373  VADGNFLPITHTGSTNLASSS 393


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  155 bits (391), Expect = 6e-35
 Identities = 105/381 (27%), Positives = 175/381 (45%), Gaps = 21/381 (5%)
 Frame = +3

Query: 213  VAVKLTDENFLIWKQHITTTLKGYGLEGYLDGSISTPTKL-IPAEEEGLLKV--NPAYIQ 383
            V V LT +N+++WK    + L G GL G++ GSI  P++  + ++ +G      NP Y  
Sbjct: 15   VTVTLTAKNYILWKSQFESFLDGQGLLGFVTGSIPAPSQTSVVSDIDGSTSASPNPEYYT 74

Query: 384  WQRQDQXXXXXXXXXXXXXXXXTVVGLSTSFEIWKCLESNFSSHSTARIMQYKIQLQNLK 563
            W + D+                 VV  +TS E+W  + ++F+  S++R+ + + +LQN+ 
Sbjct: 75   WFKTDRVVKSWLLGSFLEDILSVVVNCNTSHEVWISVANHFNRVSSSRLFELQRRLQNVS 134

Query: 564  KNSLSVREYLSKIKGYCDALAAVGHKMNERDQVMHVLSGLGSEYDAVVVSIISKTE---N 734
            K   S+ EYL  +K  CD LA+VG  + E+ ++   L+GLG EY+ +  +I +  +    
Sbjct: 135  KRDKSMDEYLKDLKTICDQLASVGSPVTEKMKIFAALNGLGREYEPIKTTIENSMDALPG 194

Query: 735  CNLRDVTSLLLSYESRLE------------AAALINTDGSLPTAHLATQTQGR---NAQT 869
             +L DV   L  Y+ RL+            A  +  +D S  + +     +G+   N   
Sbjct: 195  PSLEDVIPKLTGYDDRLQGYLEETAVSPHVAFNITTSDDSNASGYFNAYNRGKGKSNRGR 254

Query: 870  PQYNKXXXXXXXXXXXXXXXXXXXSFGNRIHCQICGYSNHTADKCYNRFNPDFTPNTNSQ 1049
              ++                    S G  + CQICG   H A KC++RFN  +       
Sbjct: 255  NSFSTRGRGFHQQISSTNSSSGSQSGGTSVVCQICGKMGHPALKCWHRFNNSY------- 307

Query: 1050 SQRSFTEGNKNFAQSSAMIATTDQGSEVNWYPDSGATHHITNDFSNLNFAADYNGHGKLQ 1229
                + E  +  A       T   G+E  W PDS AT H+TN   +L  +  Y+G   + 
Sbjct: 308  ---QYEELPRALAAMRITDITDQHGNE--WLPDSAATAHVTNSPRSLQQSQPYHGSDAVM 362

Query: 1230 IGNGAGLDISHVGSSHKGNSS 1292
            + +G  L I+H GS++  +SS
Sbjct: 363  VADGNFLPITHTGSTNLASSS 383