BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00005019
         (1069 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   218   4e-54
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   218   4e-54
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   217   6e-54
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   217   6e-54
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           215   2e-53
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     214   4e-53
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   214   4e-53
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   214   6e-53
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   212   2e-52
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   212   2e-52
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   209   2e-51
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     207   7e-51
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        206   2e-50
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   206   2e-50
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     204   4e-50
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   204   4e-50
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   204   4e-50
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   204   5e-50
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   203   8e-50
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   203   8e-50

>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  218 bits (554), Expect = 4e-54
 Identities = 129/365 (35%), Positives = 185/365 (50%), Gaps = 19/365 (5%)
 Frame = +1

Query: 28   GSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRN 207
            GS  S GE +HVRGR++ R +N+                  P N + C  C    H I  
Sbjct: 190  GSSSSKGEALHVRGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDE 244

Query: 208  CPKGKQNQNFNNYQSN-DQANMASTSGSTGDVFMVY-------------DLCDXXXXXFR 345
            C K +  +  N        A+ A++   +GD  +V+               C       R
Sbjct: 245  CKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKR 304

Query: 346  NLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 522
            N FS+YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS +
Sbjct: 305  NWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLS 364

Query: 523  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQS 690
             L+ +G +     GV+K+ KG+LV  K +     LYV   C       +    +V + + 
Sbjct: 365  TLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEP 422

Query: 691  DKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQT 870
             KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  RV+F  S    + 
Sbjct: 423  SKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK- 481

Query: 871  MCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKML 1050
                 L+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FKNWK++
Sbjct: 482  ---GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1051 IENQT 1065
            IE QT
Sbjct: 539  IERQT 543


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  218 bits (554), Expect = 4e-54
 Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 17/366 (4%)
 Frame = +1

Query: 19   VSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHY 198
            V   +  S GE + V+GRS+ R  N +                     + C  C +  H+
Sbjct: 190  VQSDASSSKGEALQVKGRSEQRTYNDSND----RDKSKSRGRSKSRGKKFCKYCKKKIHF 245

Query: 199  IRNCPKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVY-------------DLCDXXX 333
            I+ C K    QN    +S+ +A++ +++    +GD  +V+               C    
Sbjct: 246  IKECWK---LQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHI 302

Query: 334  XXFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNL 510
               R+ FS+YK V NG V+ M N+   +I GIG V +K   G   TLK+VRH+P +  NL
Sbjct: 303  YINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNL 362

Query: 511  ISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQ 687
            IS + L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V   +
Sbjct: 363  ISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDE 422

Query: 688  SDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQ 867
             +KT+LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +
Sbjct: 423  PNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTK 482

Query: 868  TMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKM 1047
                 IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FK WK+
Sbjct: 483  ----GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKV 538

Query: 1048 LIENQT 1065
            +IE QT
Sbjct: 539  MIERQT 544


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  217 bits (553), Expect = 6e-54
 Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 19/365 (5%)
 Frame = +1

Query: 28   GSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRN 207
            GS  S GE +HVRGR++ R +N+                  P N + C  C    H I  
Sbjct: 190  GSSSSKGEALHVRGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDE 244

Query: 208  CPKGKQNQNFNNYQSN-DQANMASTSGSTGDVFMVY-------------DLCDXXXXXFR 345
            C K +  +  N        A+ A++   +GD  +V+               C       R
Sbjct: 245  CKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKR 304

Query: 346  NLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 522
            N FS+YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS +
Sbjct: 305  NWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLS 364

Query: 523  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQS 690
             L+ +G +     GV+K+ KG+LV  K +     LYV   C       +    +V + + 
Sbjct: 365  TLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEP 422

Query: 691  DKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQT 870
             KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  RV+F  S    + 
Sbjct: 423  SKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK- 481

Query: 871  MCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKML 1050
                 L+Y+HAD+WGP+ +P+ GG RY L++IDD+SRKVW + +K+K + F  FKNWK++
Sbjct: 482  ---GTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1051 IENQT 1065
            IE QT
Sbjct: 539  IERQT 543


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  217 bits (553), Expect = 6e-54
 Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 19/365 (5%)
 Frame = +1

Query: 28   GSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRN 207
            GS  S GE +HVRGR++ R +N+                  P N + C  C    H I  
Sbjct: 190  GSSSSKGEALHVRGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDE 244

Query: 208  CPKGKQNQNFNNYQSN-DQANMASTSGSTGDVFMVY-------------DLCDXXXXXFR 345
            C K +  +  N        A+ A++   +GD  +V+               C       R
Sbjct: 245  CKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKR 304

Query: 346  NLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 522
            N FS+YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS +
Sbjct: 305  NWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLS 364

Query: 523  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQS 690
             L+ +G +     GV+K+ KG+LV  K +     LYV   C       +    ++ + + 
Sbjct: 365  TLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAA--AITNDEP 422

Query: 691  DKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQT 870
             KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  RV+F  S    + 
Sbjct: 423  SKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTK- 481

Query: 871  MCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKML 1050
                 L+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FKNWK++
Sbjct: 482  ---GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 538

Query: 1051 IENQT 1065
            IE QT
Sbjct: 539  IERQT 543


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  215 bits (548), Expect = 2e-53
 Identities = 128/365 (35%), Positives = 184/365 (50%), Gaps = 19/365 (5%)
 Frame = +1

Query: 28   GSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRN 207
            GS  S GE +HVRGR++ + +N+                  P N + C  C    H I  
Sbjct: 192  GSSSSKGEALHVRGRTENKTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDE 246

Query: 208  CPKGKQNQNFNNYQSN-DQANMASTSGSTGDVFMVY-------------DLCDXXXXXFR 345
            C K +  +  N        A+ A +   +GD  +V+               C       R
Sbjct: 247  CKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSACSFHICTKR 306

Query: 346  NLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 522
            N FS+YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS +
Sbjct: 307  NWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLS 366

Query: 523  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQS 690
             L+ +G +     GV+K+ KG+LV  K +     LYV   C       +    +V + + 
Sbjct: 367  TLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAA--AVTNDEP 424

Query: 691  DKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQT 870
             KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  RV+F  S    + 
Sbjct: 425  SKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTK- 483

Query: 871  MCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKML 1050
                 L+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FKNWK++
Sbjct: 484  ---GTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVM 540

Query: 1051 IENQT 1065
            IE QT
Sbjct: 541  IERQT 545


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  214 bits (546), Expect = 4e-53
 Identities = 130/367 (35%), Positives = 186/367 (50%), Gaps = 15/367 (4%)
 Frame = +1

Query: 13   LKVSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHG 192
            +++ R    S    ++VRG+ + R  N+   F                +   C+  G   
Sbjct: 156  IRLEREEDSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDG--CFIYGSPD 213

Query: 193  HYIRNCPKGKQNQNFNNYQSNDQANMA-------------STSGSTGDVFMVYDLCDXXX 333
            H+ RNC + K+ +   + +S+  AN+              STS      + +   C    
Sbjct: 214  HWKRNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELLAISTSSGAPRHWTLDTACTFHT 273

Query: 334  XXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLI 513
               R+ F  YKE    SVLM N+  S+I GIG V ++   G    L NVRH P L  NLI
Sbjct: 274  CAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLI 333

Query: 514  SCAALEDDGLEGRWGKGVMKILKGNLVIFK-AEKKRNLYVCNAESEHESYVHNSVN-SVQ 687
            S + ++  G   +   GV+K+ KG +V  K A +  N+Y         S V        +
Sbjct: 334  SLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTG-----STVEGGAGVCTE 388

Query: 688  SDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQ 867
             DKT+LW +RLGHMS +GL+ LHK         + + FC  C LGKQ+RV F +S   N+
Sbjct: 389  EDKTELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENK 448

Query: 868  TMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKM 1047
            +    +L+Y+H DVWGP++  ++GG RYF+S IDDFSRKVW+F MK K+EVF KFK WK 
Sbjct: 449  S--KGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKA 506

Query: 1048 LIENQTG 1068
             + NQTG
Sbjct: 507  EVGNQTG 513


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  214 bits (546), Expect = 4e-53
 Identities = 126/355 (35%), Positives = 186/355 (52%), Gaps = 3/355 (0%)
 Frame = +1

Query: 10   DLKVSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEH 189
            +L+    SK+ SGE +++RGRS+ R      S                    KC+ C + 
Sbjct: 183  ELQKQEESKEESGEGLNIRGRSEKREKKGKNS---------KSRSKSKTKKFKCFICHKE 233

Query: 190  GHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDXXXXXFRNLFSNYKE 369
            GH+ ++CP  +QN        N    + S     G +F     C       +     +KE
Sbjct: 234  GHFKKDCPDRRQNTVKKTV--NRWTRVRSGYLIQGALFT----CVLSKLGLKT----FKE 283

Query: 370  VVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEG 549
               G VL+ N K  KI G G V +K   G    L++VR++P+L  NLIS   L+  G   
Sbjct: 284  ADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTF 343

Query: 550  RWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDK---TDLWHKRL 720
            +     +++ +G+L + K   K  LY    ++     V   V++V  +    T LWH+RL
Sbjct: 344  KSEPNSLRVARGSLTVMKGTIKNGLYTLIGQT-----VTGKVSTVLKEDVGTTKLWHQRL 398

Query: 721  GHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLH 900
            GH+S +GL+ L K G  G  KL+ +PFC+ CV GK +RVKF  +    Q      L+Y+H
Sbjct: 399  GHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKAIHETQNQ----LDYIH 454

Query: 901  ADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQT 1065
            +D+WGP+  P+ GG RYFL++IDD+SRKVW++ +KNKSE F KFK WK+L+E QT
Sbjct: 455  SDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQT 509


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  214 bits (544), Expect = 6e-53
 Identities = 122/355 (34%), Positives = 184/355 (51%), Gaps = 21/355 (5%)
 Frame = +1

Query: 64   RGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRNCPK--------- 216
            RGR   + NNQ                   +  R C+ CG+ GH+ + C K         
Sbjct: 192  RGRPDGKNNNQGNK------GKNRSRSKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQ 245

Query: 217  -GKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDL----------CDXXXXXFRNLFSNY 363
             G  N   +  +S +  N A    +T +  +V D           C       ++ F ++
Sbjct: 246  QGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDF 305

Query: 364  KEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGL 543
            KE+ +G V M N+  S + GIG + ++   G  + L +VR++P++  NLIS   LED G 
Sbjct: 306  KELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGC 365

Query: 544  EGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 723
              +   G++KI+KG   I K +K+  LY+ +  +E E   H+S      D+T LWH RLG
Sbjct: 366  WFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTE-EGESHSSAE--VKDETALWHSRLG 422

Query: 724  HMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCSDILEYLHA 903
            HMS KG+EIL K GC  ++ +  + FC+ CV GKQ RV F     P Q +  + L Y+H+
Sbjct: 423  HMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA----PAQHVTKEKLAYVHS 478

Query: 904  DVWGPASEPTQGGN-RYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIENQT 1065
            D+WG    P   GN +YF+S +DD+SRKVW++ ++ K E FEKF  WK ++ENQ+
Sbjct: 479  DLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQS 533


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  212 bits (540), Expect = 2e-52
 Identities = 121/321 (37%), Positives = 169/321 (52%), Gaps = 19/321 (5%)
 Frame = +1

Query: 163  RKCYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYD--------- 315
            R CYNC + GH+ R+CP  ++ +   + Q ND    A    +   V  + +         
Sbjct: 230  RNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSG 289

Query: 316  ---------LCDXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALT 468
                              R+LF  Y     G+V M N   SKIAGIGD+C+K   G  L 
Sbjct: 290  PESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLV 349

Query: 469  LKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESE 648
            LK+VRHVPDL  NLIS  AL+ DG E  +     ++ KG+LVI K   +  LY  NAE  
Sbjct: 350  LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE-- 407

Query: 649  HESYVHNSVNSVQSD-KTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGK 825
                    +N+ Q +   DLWHKR+GHMS KGL+IL K       K + +  CD C+ GK
Sbjct: 408  ---ICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGK 464

Query: 826  QSRVKFPVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMK 1005
            Q RV F  S         +IL+ +++DV GP    + GGN+YF++ IDD SRK+WV+++K
Sbjct: 465  QHRVSFQTS----SERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILK 520

Query: 1006 NKSEVFEKFKNWKMLIENQTG 1068
             K +VF+ F+ +  L+E +TG
Sbjct: 521  TKDQVFQVFQKFHALVERETG 541


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  212 bits (539), Expect = 2e-52
 Identities = 127/366 (34%), Positives = 189/366 (51%), Gaps = 17/366 (4%)
 Frame = +1

Query: 19   VSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHY 198
            V   +  S GE + VRGRS+ R  N +                     + C  C +  H+
Sbjct: 85   VQSDASSSKGEALQVRGRSEQRTYNDSND----RDKNQSRGRSKSRGKKFCKYCKKKNHF 140

Query: 199  IRNCPKGKQNQNFNNYQSNDQANMASTSGST--GDVFMVYDLCDXXXXXF---------- 342
            I  C K    QN    +S+ +A++ +++ ++  GD  +V+ +C      +          
Sbjct: 141  IEECWK---LQNKEKRKSDGKASVVTSADNSDSGDCLVVFVVCVSSHDEWILDTTCSFHI 197

Query: 343  ---RNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNL 510
               R+ FS+YK V NG V+ M ++   +I GIG V +K   G   TLK+VRH+P +  NL
Sbjct: 198  CINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNL 257

Query: 511  ISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQ 687
            IS + L+ +G +     GV+K+ KG+LV    +    NLYV    + H       V+  +
Sbjct: 258  ISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGYVTAAVVSKDE 317

Query: 688  SDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQ 867
              KT++WH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +
Sbjct: 318  PSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTK 377

Query: 868  TMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKM 1047
                 IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRKVW + +K+K + F  FK WK+
Sbjct: 378  ----GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKV 433

Query: 1048 LIENQT 1065
            +I+ QT
Sbjct: 434  MIKRQT 439


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  209 bits (531), Expect = 2e-51
 Identities = 128/366 (34%), Positives = 184/366 (50%), Gaps = 17/366 (4%)
 Frame = +1

Query: 19   VSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHY 198
            V   +  S GE + VRGRS+ R  N +                     + C  C +  H+
Sbjct: 190  VQSDASSSKGEALQVRGRSEQRTYNDSSD----RDKSQSRGRSKSRGKKFCKYCKKKNHF 245

Query: 199  IRNCPKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVY-------------DLCDXXX 333
            I  C K    QN    +S+ +A++ +++    +GD  +V+               C    
Sbjct: 246  IEECWK---LQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHI 302

Query: 334  XXFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNL 510
               R+ FS+YK V NG V+ M ++   +I GIG V +K   G   TLK+VRH+P +  NL
Sbjct: 303  CINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNL 362

Query: 511  ISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQ 687
            IS + L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V+  +
Sbjct: 363  ISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDE 422

Query: 688  SDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQ 867
              KT+LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +
Sbjct: 423  PIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTK 482

Query: 868  TMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKM 1047
                 IL+Y+H D+WGP+ +   GG RY L+IIDD+SRKVW + +K+K + F  FK WK+
Sbjct: 483  ----GILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKV 538

Query: 1048 LIENQT 1065
             IE QT
Sbjct: 539  RIERQT 544


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  207 bits (526), Expect = 7e-51
 Identities = 126/369 (34%), Positives = 183/369 (49%), Gaps = 21/369 (5%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + VRGR Q +  N N                     + C  C   GH I
Sbjct: 99   SEGSN-SQAEGLVVRGRQQEK--NTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDI 155

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQANMAST------SGSTGDVFMVYDLC 321
              C              PKGK+ +        D+ + A           T D +++   C
Sbjct: 156  SECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTAC 215

Query: 322  DXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLC 501
                   R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L 
Sbjct: 216  TYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLK 275

Query: 502  NNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVN 678
             +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S +
Sbjct: 276  RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDS 335

Query: 679  SVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPF 858
               SD T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  RVKF  S  
Sbjct: 336  LSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 395

Query: 859  PNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKN 1038
              +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK 
Sbjct: 396  TTE----GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKE 451

Query: 1039 WKMLIENQT 1065
            WK ++E QT
Sbjct: 452  WKTMVERQT 460


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  206 bits (523), Expect = 2e-50
 Identities = 126/369 (34%), Positives = 181/369 (49%), Gaps = 21/369 (5%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + VRG  Q +  N N                     + C  C   GH I
Sbjct: 190  SEGSN-SQAEGLVVRGSQQEK--NTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDI 246

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQANMAST------SGSTGDVFMVYDLC 321
              C              PKGK+ +        D+ + A           T D +++   C
Sbjct: 247  SKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTAC 306

Query: 322  DXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLC 501
                   R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L 
Sbjct: 307  TYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 366

Query: 502  NNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVN 678
             +LIS   L+  G +   G G++K+ KG+LV+ KA  K  NLY     +   +    S +
Sbjct: 367  RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDS 426

Query: 679  SVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPF 858
               SD T+LWH RLGHMS  GL  L K G      +S + FC+ C+ GK  RVKF  S  
Sbjct: 427  LSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTH 486

Query: 859  PNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKN 1038
              +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F  FK 
Sbjct: 487  TTE----GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKE 542

Query: 1039 WKMLIENQT 1065
            WK ++E QT
Sbjct: 543  WKTMVERQT 551


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  206 bits (523), Expect = 2e-50
 Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 17/362 (4%)
 Frame = +1

Query: 31   SKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYIRNC 210
            +  S GE + VRGRS+ R  N +                     + C  C +  H+I  C
Sbjct: 194  ASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKS----RGKKFCKYCKKKNHFIEEC 249

Query: 211  PKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVY-------------DLCDXXXXXFR 345
             K    QN    +S+ +A++ +++    +GD  +V+               C       R
Sbjct: 250  WK---LQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINR 306

Query: 346  NLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCA 522
            + FS+YK V N  V+ M ++   +I GIG V +K   G   TLK+VRH+P +  NLIS +
Sbjct: 307  DWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLS 366

Query: 523  ALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKT 699
             L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V   +  KT
Sbjct: 367  TLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKT 426

Query: 700  DLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQTMCS 879
            +LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +    
Sbjct: 427  NLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTK---- 482

Query: 880  DILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKMLIEN 1059
             IL+Y+HAD+WGP+ +P+ GG RY L+IIDD+SRK W + +K+K + F  FK  K++IE 
Sbjct: 483  GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIER 542

Query: 1060 QT 1065
            QT
Sbjct: 543  QT 544


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  204 bits (520), Expect = 4e-50
 Identities = 130/374 (34%), Positives = 186/374 (49%), Gaps = 26/374 (6%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + VRGR Q + N +NQS                   + C  C   GH I
Sbjct: 225  SEGSN-SQAEGLVVRGRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDI 281

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQ----------ANMASTSGS-TGDVFM 306
              C              PKGK+ +        D+          A  A TS     D   
Sbjct: 282  SECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAW 341

Query: 307  VYDLCDXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRH 486
             Y +C       R+ F+ Y+ +  G+VLM ++   ++AGIG V +K   GY  TL +VRH
Sbjct: 342  TYHMCPN-----RDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRH 396

Query: 487  VPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYV 663
            +P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +  
Sbjct: 397  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 456

Query: 664  HNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKF 843
              S +   SD T+LWH RLGHMS  GL  L K        +  + FC+ C+ GK  RVKF
Sbjct: 457  AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKF 516

Query: 844  PVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVF 1023
              S    +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F
Sbjct: 517  NTSTHTTE----GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAF 572

Query: 1024 EKFKNWKMLIENQT 1065
            + FK WK ++E QT
Sbjct: 573  DVFKEWKTMVERQT 586


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  204 bits (520), Expect = 4e-50
 Identities = 113/310 (36%), Positives = 161/310 (51%), Gaps = 10/310 (3%)
 Frame = +1

Query: 169  CYNCGEHGHYIRNCPKGKQNQNFNNYQS----------NDQANMASTSGSTGDVFMVYDL 318
            C  C E GH+  +CPK K+     +  +           D A +A       DV+++   
Sbjct: 225  CNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSG 284

Query: 319  CDXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDL 498
                    R  F+ Y++V  GS+ MAN    K+ G G + ++   G   TL  VRHVP +
Sbjct: 285  ASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLM 344

Query: 499  CNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVN 678
              NLIS + L+  G       GV+++ KG+ +I K   +  LY     +   S    S  
Sbjct: 345  TKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSE 404

Query: 679  SVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPF 858
              Q D T LWH RLGHM  +G++IL K       K+  + FC+ CV GK  R KFP +  
Sbjct: 405  FHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIH 464

Query: 859  PNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKN 1038
              +      L+Y+H+D WGP    + GG R+F+SIIDD+SR  WV++MK+KSE F+KFK 
Sbjct: 465  RTK----GTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKE 520

Query: 1039 WKMLIENQTG 1068
            WK+L+ENQTG
Sbjct: 521  WKILMENQTG 530


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  204 bits (520), Expect = 4e-50
 Identities = 130/374 (34%), Positives = 186/374 (49%), Gaps = 26/374 (6%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + VRGR Q + N +NQS                   + C  C   GH I
Sbjct: 225  SEGSN-SQAEGLVVRGRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDI 281

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQ----------ANMASTSGS-TGDVFM 306
              C              PKGK+ +        D+          A  A TS     D   
Sbjct: 282  SECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAW 341

Query: 307  VYDLCDXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRH 486
             Y +C       R+ F+ Y+ +  G+VLM ++   ++AGIG V +K   GY  TL +VRH
Sbjct: 342  TYHMCPN-----RDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRH 396

Query: 487  VPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYV 663
            +P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +  
Sbjct: 397  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 456

Query: 664  HNSVNSVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKF 843
              S +   SD T+LWH RLGHMS  GL  L K        +  + FC+ C+ GK  RVKF
Sbjct: 457  AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKF 516

Query: 844  PVSPFPNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVF 1023
              S    +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F
Sbjct: 517  NTSTHTTE----GILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAF 572

Query: 1024 EKFKNWKMLIENQT 1065
            + FK WK ++E QT
Sbjct: 573  DVFKEWKTMVERQT 586


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  204 bits (519), Expect = 5e-50
 Identities = 124/365 (33%), Positives = 185/365 (50%), Gaps = 17/365 (4%)
 Frame = +1

Query: 19   VSRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHY 198
            V   +  S G+ + VRGRS+ R  N +                     + C  C +  H+
Sbjct: 187  VQSDASSSKGKALQVRGRSEQRTYNDSND----RDKSQSRGRSKSRGKKFCKYCKKKNHF 242

Query: 199  IRNCPKGKQNQNFNNYQSNDQANMASTSGSTG---------------DVFMVYDLCDXXX 333
            I  C K    QN    +S+ +A++ +++ ++                D +++   C    
Sbjct: 243  IEECWK---LQNKEKRKSDGKASVVTSAENSDSADCLVFFAGCVASHDEWILDTACLFLI 299

Query: 334  XXFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNL 510
               R+ FS++K V NG V+ M +    +I GIG V +K   G   TLK+VRH+P +  NL
Sbjct: 300  CINRDWFSSHKSVQNGDVVRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNL 359

Query: 511  ISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQ 687
            IS + L+ +G +     GV+K+ KG+LV    +    NLYV    + H S    +V+  +
Sbjct: 360  ISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSLTAAAVSKDE 419

Query: 688  SDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPFPNQ 867
              KT+LWH RLGHMS  G+  L K           M FC+ CV GK  RVKF  S    +
Sbjct: 420  PSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTK 479

Query: 868  TMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKNWKM 1047
                 IL+Y+HAD+WGP+ +P+ GG  Y L+IIDD+SRKVW + +K+K + F  FK WK+
Sbjct: 480  ----GILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKV 535

Query: 1048 LIENQ 1062
            +IE Q
Sbjct: 536  MIERQ 540


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  203 bits (517), Expect = 8e-50
 Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 21/369 (5%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + V GR Q + N +NQS                   + C  C   GH I
Sbjct: 397  SEGSN-SQAEGLIVWGRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDI 453

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQANMAST------SGSTGDVFMVYDLC 321
              C              PKGK+ +        D+ + A           T D +++   C
Sbjct: 454  FECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTAC 513

Query: 322  DXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLC 501
                   R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L 
Sbjct: 514  IYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 573

Query: 502  NNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVN 678
             +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S +
Sbjct: 574  RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 633

Query: 679  SVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPF 858
               SD T+LWH RLGHM+  GL  L K G      +  + FC+ C+ GK  RVKF  S  
Sbjct: 634  LSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 693

Query: 859  PNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKN 1038
              +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK 
Sbjct: 694  TTE----GILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKE 749

Query: 1039 WKMLIENQT 1065
            WK ++E QT
Sbjct: 750  WKTMVERQT 758


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  203 bits (517), Expect = 8e-50
 Identities = 126/369 (34%), Positives = 185/369 (50%), Gaps = 21/369 (5%)
 Frame = +1

Query: 22   SRGSKQSSGEVMHVRGRSQTRFNNQNQSFXXXXXXXXXXXXXXPNNNRKCYNCGEHGHYI 201
            S GS  S  E + V GR Q + N +NQS                   + C  C   GH I
Sbjct: 190  SEGSN-SQAEGLIVWGRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDI 246

Query: 202  RNC--------------PKGKQNQNFNNYQSNDQANMAST------SGSTGDVFMVYDLC 321
              C              PKGK+ +        D+ + A           T D +++   C
Sbjct: 247  FECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTAC 306

Query: 322  DXXXXXFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLC 501
                   R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L 
Sbjct: 307  IYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLK 366

Query: 502  NNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVN 678
             +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S +
Sbjct: 367  RSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDS 426

Query: 679  SVQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSCVLGKQSRVKFPVSPF 858
               SD T+LWH RLGHM+  GL  L K G      +  + FC+ C+ GK  RVKF  S  
Sbjct: 427  LSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTH 486

Query: 859  PNQTMCSDILEYLHADVWGPASEPTQGGNRYFLSIIDDFSRKVWVFLMKNKSEVFEKFKN 1038
              +     IL+Y+H+D+WGPA + + GG RY ++I+DD+SRKVW + +K+K + F+ FK 
Sbjct: 487  TTE----GILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKE 542

Query: 1039 WKMLIENQT 1065
            WK ++E QT
Sbjct: 543  WKTMVERQT 551