BLASTX nr result
ID: Rehmannia25_contig00004686
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00004686
(314 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 108 1e-21
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 107 1e-21
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 103 2e-20
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 102 4e-20
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 101 1e-19
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ... 101 1e-19
ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana toment... 101 1e-19
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 100 3e-19
ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacu... 100 3e-19
prf||1211235K rpoC-like ORF 862 100 3e-19
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras... 99 6e-19
gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datu... 99 6e-19
ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ... 99 6e-19
ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) ... 99 6e-19
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 99 6e-19
ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna] 99 6e-19
gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplas... 98 1e-18
gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bart... 97 2e-18
ref|YP_008815194.1| RNA polymerase beta' subunit (chloroplast) [... 97 2e-18
ref|YP_008815020.1| RNA polymerase beta' subunit (chloroplast) [... 97 2e-18
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
(chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 108 bits (269), Expect = 1e-21
Identities = 52/55 (94%), Positives = 52/55 (94%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHNK PLETKK NNLFEGE RDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS
Sbjct: 1337 SKQHNKGPLETKK-NNLFEGETRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 1390
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 1397
Score = 107 bits (268), Expect = 1e-21
Identities = 51/57 (89%), Positives = 54/57 (94%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 TSKQHNKSPLETK-KKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
+SKQHN+SPLE + KKNNLFEGEMRDILFHHRKLFDSF SKNFHDRPEQSFIGFNDS
Sbjct: 1341 SSKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLFDSFFSKNFHDRPEQSFIGFNDS 1397
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
(chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 103 bits (258), Expect = 2e-20
Identities = 49/56 (87%), Positives = 52/56 (92%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 SKQHNKSPLETK-KKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN+SPLE + KKNNLFEGEMRDILFHHRKLFDS SKNFHDRPEQ+FIGFNDS
Sbjct: 1340 SKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLFDSLFSKNFHDRPEQAFIGFNDS 1395
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 102 bits (255), Expect = 4e-20
Identities = 50/56 (89%), Positives = 52/56 (92%), Gaps = 1/56 (1%)
Frame = +1
Query: 82 SKQHNKSPLETK-KKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN+SPLE + KKNNLFEGE RDILFHHRKLFDSFLSKNFHDR EQSFIGFNDS
Sbjct: 1340 SKQHNRSPLEMETKKNNLFEGETRDILFHHRKLFDSFLSKNFHDRLEQSFIGFNDS 1395
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
[Nicotiana tomentosiformis]
Length = 1392
Score = 101 bits (251), Expect = 1e-19
Identities = 50/55 (90%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit
(chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit
[synthetic construct]
Length = 1392
Score = 101 bits (251), Expect = 1e-19
Identities = 50/55 (90%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1388
Score = 101 bits (251), Expect = 1e-19
Identities = 50/55 (90%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1388
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
[Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 100 bits (248), Expect = 3e-19
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKN-LFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|126165910|ref|YP_358662.2| RNA polymerase beta''
subunit [Nicotiana sylvestris]
Length = 1388
Score = 100 bits (248), Expect = 3e-19
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKN-LFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 1388
>prf||1211235K rpoC-like ORF 862
Length = 862
Score = 100 bits (248), Expect = 3e-19
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 809 SKQHNNIPLETKKKN-LFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 862
>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II
subunit [Atropa belladonna]
Length = 1389
Score = 99.0 bits (245), Expect = 6e-19
Identities = 49/55 (89%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1336 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1389
>gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
Length = 1388
Score = 99.0 bits (245), Expect = 6e-19
Identities = 49/55 (89%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1388
>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta'' subunit
(chloroplast) [Capsicum annuum]
Length = 1392
Score = 99.0 bits (245), Expect = 6e-19
Identities = 49/55 (89%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
gi|350996503|gb|AEQ37014.1| RNA polymerase beta subunit-2
[Datura stramonium]
Length = 1388
Score = 99.0 bits (245), Expect = 6e-19
Identities = 49/55 (89%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1388
>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit
(chloroplast) [Boea hygrometrica]
Length = 1381
Score = 99.0 bits (245), Expect = 6e-19
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHNKSPL+TKK +NLFEGEMRDILFHH++LFDSFLSKNFHD EQ FIGFNDS
Sbjct: 1328 SKQHNKSPLQTKK-DNLFEGEMRDILFHHKRLFDSFLSKNFHDTSEQLFIGFNDS 1381
>ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]
Length = 1385
Score = 99.0 bits (245), Expect = 6e-19
Identities = 49/55 (89%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
SKQHN PLETKKKN LFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1332 SKQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1385
>gb|AHE41665.1| RNA polymerase beta' subunit, partial (chloroplast) [Philadelphus
coronarius]
Length = 1368
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/55 (87%), Positives = 49/55 (89%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
S+QHN PLETKKKN LFEGEMRDILFHHRKLFDS LSKNFHD EQSFIGFNDS
Sbjct: 1315 SRQHNNIPLETKKKN-LFEGEMRDILFHHRKLFDSCLSKNFHDTSEQSFIGFNDS 1368
>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bartsia inaequalis]
Length = 1384
Score = 97.4 bits (241), Expect = 2e-18
Identities = 46/57 (80%), Positives = 51/57 (89%)
Frame = +1
Query: 76 MTSKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
+ S++HNKSPLETK NNLFEGEM DILF+HRK FDSFLSKNFHDR EQSF+GFNDS
Sbjct: 1329 LPSQEHNKSPLETKN-NNLFEGEMGDILFYHRKFFDSFLSKNFHDRSEQSFLGFNDS 1384
>ref|YP_008815194.1| RNA polymerase beta' subunit (chloroplast) [Kalopanax septemlobus]
gi|458599602|gb|AGG39294.1| RNA polymerase beta' subunit
(chloroplast) [Kalopanax septemlobus]
Length = 1387
Score = 97.4 bits (241), Expect = 2e-18
Identities = 47/57 (82%), Positives = 49/57 (85%)
Frame = +1
Query: 76 MTSKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
+ S+QH PLETKKKN LFEGEMRDILFHHRK FDS LSKNFHD PEQSFIGFNDS
Sbjct: 1332 LPSRQHKNIPLETKKKN-LFEGEMRDILFHHRKFFDSCLSKNFHDTPEQSFIGFNDS 1387
>ref|YP_008815020.1| RNA polymerase beta' subunit (chloroplast) [Metapanax delavayi]
gi|458599361|gb|AGG39120.1| RNA polymerase beta' subunit
(chloroplast) [Metapanax delavayi]
Length = 1384
Score = 97.1 bits (240), Expect = 2e-18
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = +1
Query: 82 SKQHNKSPLETKKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 246
S+QH PLETKKKN LFEGEMRDILFHHRK FDS LSKNFHD PEQSFIGFNDS
Sbjct: 1331 SRQHKNIPLETKKKN-LFEGEMRDILFHHRKFFDSCLSKNFHDTPEQSFIGFNDS 1384