BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00004301
         (3994 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   673   0.0  
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   653   0.0  
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   568   e-159
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   564   e-157
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       564   e-157
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   535   e-149
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   521   e-144
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   517   e-143
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   514   e-142
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   504   e-139
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           504   e-139
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              489   e-135
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   488   e-135
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   481   e-133
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   452   e-124
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   437   e-119
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   433   e-118
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               420   e-114
emb|CAN68838.1| hypothetical protein VITISV_030956 [Vitis vinifera]   420   e-114
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   409   e-111

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  673 bits (1736), Expect = 0.0
 Identities = 371/1101 (33%), Positives = 574/1101 (52%), Gaps = 16/1101 (1%)
 Frame = +2

Query: 410  MIIATWNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNN 589
            M I TWN+RG N P+K  EV + +  + I +  L ET+  QQ   K      N WS  NN
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINN 60

Query: 590  FDLVKGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPL 769
            +     GRI + W    VNI V+    QVI           +F ++ VYGLH++ DRK L
Sbjct: 61   YACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVL 120

Query: 770  WEELNRIKQIVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGLTDLPSTG 949
            WEEL     +     +++GD+N++ ++ +R NG  +   +  D  +      L + P+TG
Sbjct: 121  WEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTG 180

Query: 950  HFFTWTNNTVW-----SKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAA 1114
             F++W N ++      S++D++ V+  WI + P     +  +G+SDHSP + N+      
Sbjct: 181  LFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNLATQHDE 240

Query: 1115 GKTPWRFFNMWTEHDEFMATVRDKWDITIWGTAQFRLRTK-----LRELKSCLKTLNDKH 1279
            G  P++F N   + + F+  V++      WG+A  R + K     L+ +K  LK+ + K 
Sbjct: 241  GGRPFKFLNFLADQNGFVEVVKE-----AWGSANHRFKMKNIWVRLQAVKRALKSFHSKK 295

Query: 1280 FXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSK 1459
            F                    L       E+  +   L  +    S  ++   +QK++ +
Sbjct: 296  F-SKAHCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQ 354

Query: 1460 FIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGT-AQH 1636
            ++   D  SKFF   +K    RN I  L  D G       ++  E   FY+ LLGT +  
Sbjct: 355  WLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQ 414

Query: 1637 TQHIDGDVINNGPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWN 1816
             + ID  V+  G  L+A +   L++ ++ +EI  AL D++  K+PG DGF+S FFKK+W 
Sbjct: 415  LEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWL 474

Query: 1817 IVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKIL 1996
            ++  +  E I +FF +G + K  N   V LIPK   +    D+RPI+CC+  YK++SKIL
Sbjct: 475  VIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKIL 534

Query: 1997 ATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDS 2176
              RL +V+  ++D AQ  F+  R + DNI L  EL+R YNR+  +PRC +K+D+RKA+DS
Sbjct: 535  TKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDS 594

Query: 2177 VSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYL 2356
            V W FL  +L  LGFP  F+RW+M CV T SYS+ +N             RQGDPLSP+L
Sbjct: 595  VEWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFL 654

Query: 2357 FVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLD 2536
            F + +EYLSR +     +  FNFHPKC  + +THL FADDL+M +R D  S+  ++   +
Sbjct: 655  FALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFN 714

Query: 2537 DFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHY 2716
             F   SGL+ +I KS I+  G+   ++  +    Q+  GS+PFRYLG+PLA+++L  +  
Sbjct: 715  SFSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQC 774

Query: 2717 EELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNF 2896
            + LI KI     GW A  LSYAGR +L+++++  ++ +W  IFP+P  +   +   CR F
Sbjct: 775  KPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKF 834

Query: 2897 LW----GTGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLWYRWI 3064
            LW     T  KA +AW  +  PK  GGL + ++  WN + + K LW I  ++D LW RW+
Sbjct: 835  LWTGTVDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWV 894

Query: 3065 HHYYLHNRPFRDWTVARSDSNLIKNIYSIRTQILHKYGGNWQKTEQQLVNWHSNHQVKGP 3244
            + YY+  +   + TV+ + S +++ I+  R ++L + GG W+          SNH     
Sbjct: 895  NAYYIKRQNIENVTVSSNTSWILRKIFESR-ELLTRTGG-WEAV--------SNHMNFSI 944

Query: 3245 KNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLE-DGTCNF 3421
            K  Y   ++      W  ++  +  TPK  F LWLA   R+ T +R+     +    C  
Sbjct: 945  KKTYKLLQEDYENVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKM 1004

Query: 3422 CAAQPETAAHLFFNCPFSAAIWDGIKEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQK 3601
            C  + ET  HLFFNC +S  IW  +  +  +  Q    +     +KK AR T  ++K   
Sbjct: 1005 CGNEIETIQHLFFNCIYSKEIWGKVLLYLNLQPQADAQAKKELAIKK-ARSTKDRNKLYV 1063

Query: 3602 IAMATTVYQIWNARNRLIFEG 3664
            +    +VY IW  RN  +F G
Sbjct: 1064 MMFTESVYAIWLLRNAKVFRG 1084


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  653 bits (1685), Expect = 0.0
 Identities = 382/1126 (33%), Positives = 571/1126 (50%), Gaps = 29/1126 (2%)
 Frame = +2

Query: 410  MIIATWNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNN 589
            M+  +WN+RG N P K  E+ N +    I V  LLET+  +Q  +K        W   NN
Sbjct: 1    MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNN 60

Query: 590  FDLVKGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFV--YGLHSVGDRK 763
            +      RI I W  A VN+ +     Q    L  C I  +   +  V  YGLH++ DRK
Sbjct: 61   YSHSARERIWIGWRPAWVNVTLTHTQEQ----LMVCDIQDQSHKLKMVAVYGLHTIADRK 116

Query: 764  PLWEELNRIKQIVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGLTDLPS 943
             LW  L +  Q      +I+GDFN++ +SN+R  G  +   + +DF        L +  S
Sbjct: 117  SLWSGLLQCVQQQD-PMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRS 175

Query: 944  TGHFFTWTNNT-----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNAS 1108
            T  +++W+N++     V S++D+A V+  W+      +  +LP G+SDHSP + N+    
Sbjct: 176  TWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHSPLLFNLMTGR 235

Query: 1109 AAGKTPWRFFNMWTEHDEFMATVRDKWDIT--------IWGTAQFRLRTKLRELKSCLKT 1264
              G  P++F N+  E  EF+ TV   W+          IW      L+   RELK  +KT
Sbjct: 236  PQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIW----LNLKAVKRELKQ-MKT 290

Query: 1265 LNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQ 1444
                                       HND    +  + +  LR      S+ E    +Q
Sbjct: 291  QKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQTDAKSIMNDLRH----WSHIEDSILQQ 346

Query: 1445 KAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLG 1624
            K++  ++   D  SK F   VK     N I  L  +DG +    ++V  E L FYK LLG
Sbjct: 347  KSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLG 406

Query: 1625 TAQHT-QHIDGDVINNGPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFF 1801
            T   T   +D + +  G  L+A+  +SL+R V+  EI  AL  +  DK+PG DGF++ FF
Sbjct: 407  TRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFF 466

Query: 1802 KKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKV 1981
            KK+W  +  +    I EFF + R+ +  N + V L+PK  H+ +V +FRPI+CC V YK+
Sbjct: 467  KKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKI 526

Query: 1982 LSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLR 2161
            +SK+L  R+  ++  +++ AQ+ F+ GR + DNI L  EL+R Y RK  +PRC +K+D+R
Sbjct: 527  ISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIR 586

Query: 2162 KAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDP 2341
            KA+DSV W+FL  +L   GFP RFV W+MECV+T SYS+ +N             RQGDP
Sbjct: 587  KAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDP 646

Query: 2342 LSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKIL 2521
            +SP+LF +C+EYLSR + +   +  FNFHPKC  LNITHL FADDL+M  R D  S+  +
Sbjct: 647  MSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHM 706

Query: 2522 LDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERL 2701
                  F   SGL  +  KSNI+  G+ +  +  +  +  +  G +PFRYLG+PL +++L
Sbjct: 707  NVAFQKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKL 766

Query: 2702 KVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQ 2881
              A  + L+  I      W A  LSYAGR +LI+S++  ++ +W  IFP+   V   + +
Sbjct: 767  TYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEK 826

Query: 2882 ICRNFLWGTG-----GKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDS 3046
            +CR FLW TG      KA +AW TI  PK  GG  + +++ WN + + K LW I  ++D 
Sbjct: 827  VCRKFLW-TGKTEETKKAPVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDK 885

Query: 3047 LWYRWIHHYYLHNRPFRDWTVARSDSNLIKNIYSIRTQILHKYGGNWQKTEQQLVNWHSN 3226
            LW RWIH YY+  +      ++   + +++ I   R  + +   G+W +           
Sbjct: 886  LWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKARDHLSNI--GDWDEI--------CI 935

Query: 3227 HQVKGPKNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLE- 3403
                  K  Y    + G +  W  ++  +  TPK  F LW+  H+R+ T DR+    ++ 
Sbjct: 936  GDKFSMKKAYKKISENGERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQC 995

Query: 3404 DGTCNFCAAQPETAAHLFFNCPFSAAIWDGI-----KEWTGISRQMTTLSSALKWLKKEA 3568
            D     C    ET  HLFF+C +SA +W  I        +G+S Q    S          
Sbjct: 996  DLNYRLCRNDGETIQHLFFSCSYSAGVWSKICYIMRFPNSGVSHQEIISSVC-------- 1047

Query: 3569 RGTSKKSKGQKIAMATT--VYQIWNARNRLIFEGEVLHIDFVIHKI 3700
             G ++K KG+ I M  T  VY IW  RN+  F GE    + V+ KI
Sbjct: 1048 -GQARKKKGKLIVMLYTEFVYAIWKQRNKRTFTGENKDENEVLRKI 1092


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  568 bits (1464), Expect = e-159
 Identities = 337/1000 (33%), Positives = 516/1000 (51%), Gaps = 19/1000 (1%)
 Frame = +2

Query: 422  TWNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNNFDLV 601
            +WN+RGFN+ +++       +        +LET+  +    + + +   GW S  N++  
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFA 65

Query: 602  KGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEEL 781
              GRI + W+ A V + V+    Q I            F V+FVY ++    R+ LW EL
Sbjct: 66   ALGRIWVVWDPA-VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSEL 124

Query: 782  NRI---KQIVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGLTDLPSTGH 952
              +   +    + W+I+GDFN  L+  +   G     R +++F  C     ++DLP  G+
Sbjct: 125  ELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRGN 184

Query: 953  FFTW----TNNTVWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGK 1120
             +TW     NN +  K+DR +V++ W++ +P +   F     SDH P  VNI+N S    
Sbjct: 185  HYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRN 244

Query: 1121 TPWRFFNMWTEHDEFMATVRDKWD-ITIWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXX 1297
             P++  N    H EF+  +R  WD +   G+A F L  K + LK  ++T N +H+     
Sbjct: 245  KPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEK 304

Query: 1298 XXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSD 1477
                           L   P++     +  A R  +  L+ AE++F  QK++  ++   D
Sbjct: 305  RVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAE-LALAEERFLCQKSRVLWLKCGD 363

Query: 1478 KCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDG- 1654
              + FFH ++      N I  L    G    +T+++    + F+K L G++ H    +G 
Sbjct: 364  SNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGI 423

Query: 1655 -DVINNGPLLAAENWDSLLRA-VSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIVGV 1828
              + +       EN   LL A VS+ +I      +  +KSPGPDG++S+FFKK W+IVG 
Sbjct: 424  SQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGP 483

Query: 1829 DFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILATRL 2008
                A+ EFF SGRLL +WN   V ++PK  ++ ++ +FRPISCCN  YKV+SK+LA RL
Sbjct: 484  SLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRL 543

Query: 2009 SSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWT 2188
             ++L   I  +Q+AFVKGR + +N+ L  EL++ + +   + R  LK+DLRKAFDSV W 
Sbjct: 544  ENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWG 603

Query: 2189 FLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVIC 2368
            F+ E L     PPRFV W+ +C+T+ S+S++++             RQGDPLSP LFVI 
Sbjct: 604  FIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIA 663

Query: 2369 LEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDFGS 2548
            +E LSRL+  K ++    +HPK   + I+ LAFADDLM+   G   S++ +   L+ F +
Sbjct: 664  MEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKN 723

Query: 2549 KSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELI 2728
             SGL+MN  KS ++ AG+++ D  + L+F     G+ PFRYLG+PL   +L+ + Y +LI
Sbjct: 724  LSGLEMNTEKSAVYTAGLEDTDKEDTLAFG-FVNGTFPFRYLGLPLLHRKLRRSDYSQLI 782

Query: 2729 AKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWGT 2908
             KI    + W+  TLS+AGR +LI SV+     FWLS F +P      I Q+C  FLWG 
Sbjct: 783  DKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGN 842

Query: 2909 G----GKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLWYRWIHHYY 3076
                 G   ++W   CLPK EGGLG+R+   WN +L  + +W + AR+DSLW  W H   
Sbjct: 843  DITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANR 902

Query: 3077 LHNRPFRDWTVARSDSNLIKNIYSIR---TQILHKYGGNWQKTEQQLVNWHSNHQVKGPK 3247
            L +  F +   A   S + K I  +R    + L    GN     Q L  W+ +    GP 
Sbjct: 903  LRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGN----GQLLSYWYDHWSNLGP- 957

Query: 3248 NVYNFFRDAGTKKP-WAGIVWASGITPKHSFTLWLAAHKR 3364
                     G   P   GI  ++ +T   S T W+    R
Sbjct: 958  ----LIEAIGASGPQLTGIHESAVVTEASSSTGWILPSAR 993



 Score = 73.2 bits (178), Expect = 9e-10
 Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
 Frame = +2

Query: 3245 KNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKL-EDGTCNF 3421
            K  +   R   T K WA  VW  G  PK++F  W+A   R+  + R  H        C  
Sbjct: 1036 KLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCV 1095

Query: 3422 CAAQPETAAHLFFNCPFSAAIWDGIKEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQK 3601
            C  + ET  HLF +C   + IW  +    G S+        ++W+       S   K  K
Sbjct: 1096 CQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIEWMLSNQGSFSGTLK--K 1153

Query: 3602 IAMATTVYQIWNARN 3646
            +A+ T ++ IW  RN
Sbjct: 1154 LAVQTAIFHIWKERN 1168


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  564 bits (1454), Expect = e-157
 Identities = 361/1187 (30%), Positives = 552/1187 (46%), Gaps = 113/1187 (9%)
 Frame = +2

Query: 425  WNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNNFDLVK 604
            WN+RG N   K   +   I E N     L+ET+  +  +++ V      WS   N++  +
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 605  GGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEELN 784
             GRI + W    V +  I    Q++      +  Q  FF SFVY  + V +RK LW EL 
Sbjct: 66   RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 785  RIKQ---IVGRAWLIMGDFNSILNSNERRNGV--PIQPRDIKDFVNCSSVLGLTDLPSTG 949
                   I  + W ++GDFN  L+  E       P+    ++DF    +   LTD+ + G
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQG 184

Query: 950  HFFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASA-- 1111
              FTW N      +  KLDR ++++ W      + + F   G SDH  C +++ + +   
Sbjct: 185  PLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSEAGNK 244

Query: 1112 -AGKTPWRFFNMWTEHDEFMATVRDKWDIT----IWGTAQFRLRTKLRELKSCLKTLNDK 1276
              G  P++F N  T+ ++F   V   W  T    +  +  FR    L+ LK  ++++   
Sbjct: 245  VQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMARD 304

Query: 1277 HFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKS 1456
                                     +P++  +  +  A   R   ++  E+++ +QK+K 
Sbjct: 305  RLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAY-SRWDRVAILEEKYLKQKSKL 363

Query: 1457 KFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQH 1636
             +    D+ +K FH         N I  +  +DG +    +++  E   F++  L    +
Sbjct: 364  HWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPN 423

Query: 1637 TQHIDGDVINNGPLL-----AAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFF 1801
                +G  I     L     +  +  SL+R V+ EEI   L  +  DKSPGPDG++S+FF
Sbjct: 424  D--FEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFF 481

Query: 1802 KKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKV 1981
            K  W I+G +FT A+  FF  G L K  N   +ALIPK   + ++ D+RPISCCNV YKV
Sbjct: 482  KATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKV 541

Query: 1982 LSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLR 2161
            +SKI+A RL  VL   I G Q+AFVK R +++N+ L  EL++ Y++   + RC +KID+ 
Sbjct: 542  ISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDIS 601

Query: 2162 KAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDP 2341
            KAFDSV W FL  V   LGFP  F+ W+  C+TTAS+S+ +N             RQG  
Sbjct: 602  KAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCA 661

Query: 2342 LSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKIL 2521
            LSPYLFVIC++ LS+++ K     HF +HPKC  + +THL+FADDLM+LS G   S++ +
Sbjct: 662  LSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERI 721

Query: 2522 LDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERL 2701
            +   D+F   SGL++++ KS +++AG+       +      + G +P RYLG+PL  +RL
Sbjct: 722  IKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRL 781

Query: 2702 KVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQ 2881
                   L+ ++R+ I  W++  LSYAGR  LI SV+  +  FWL+ F +P     ++ +
Sbjct: 782  STTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEK 841

Query: 2882 ICRNFLWG----TGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSL 3049
            +C  FLW        KA I+W  +C PKDEGGLG+R L+  N     K +W I +  +SL
Sbjct: 842  MCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSL 901

Query: 3050 WYRWIHHYYLHNRPFRDWTVARSDS-------NLIKNIYSIRTQILHKYGG--------- 3181
            W +W+  + L N  F  W V ++ S        L+K     +T    + G          
Sbjct: 902  WVKWVDQHLLRNASF--WEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYD 959

Query: 3182 NWQKTEQQLVN--------------------WHSNHQVKGPKNVYNFFRDA--------- 3274
            NW    Q L                      W +  Q +   +VYN   DA         
Sbjct: 960  NWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDVYNVIEDALKKSWDTRT 1019

Query: 3275 -------------------------------GTKKPWAGIVWASGITPKHSFTLWLAAHK 3361
                                             + PW  ++W S  TPK+SF  WLAAH 
Sbjct: 1020 ETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHG 1079

Query: 3362 RIQTKDRLGHLKLEDGT-CNFCAAQPETAAHLFFNCPFSAAIWDGI----------KEWT 3508
            R+ T DR+ +      T C FC    ET  HLFF C F++ IW  +            W 
Sbjct: 1080 RLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQ 1139

Query: 3509 GISRQMT-TLSSALKWLKKEARGTSKKSKGQKIAMATTVYQIWNARN 3646
             I   +T +    ++W  +            +     T+Y +W  RN
Sbjct: 1140 SIIEAITNSQHHRVEWFLR------------RYVFQATIYIVWRERN 1174


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  564 bits (1454), Expect = e-157
 Identities = 372/1180 (31%), Positives = 569/1180 (48%), Gaps = 103/1180 (8%)
 Frame = +2

Query: 425  WNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNNFDLVK 604
            WNIRGFN+   +      ++       G++ET   Q    KF++  L GWS   N+    
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 605  GGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKI----TQRIFFVSFVYGLHSVGDRKPLW 772
             G+I + W+ + V + V+    Q+I    TC++    +     VS VY  + V  RK LW
Sbjct: 68   LGKIWVMWDPS-VQVVVVAKSLQMI----TCEVLLPGSPSWIIVSVVYAANEVASRKELW 122

Query: 773  EELNR--IKQIVG-RAWLIMGDFNSILNSNERRNGVPIQPR-DIKDFVNCSSVLGLTDLP 940
             E+    +  I+G R WL++GDFN +LN  E  N V +    +++DF +C     L+DL 
Sbjct: 123  IEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLR 182

Query: 941  STGHFFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNAS 1108
              G+ FTW N +    V  K+DR +V++ W    P +   F     SDH  C V +   S
Sbjct: 183  YKGNTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEETS 242

Query: 1109 AAGKTPWRFFNMWTEHDEFMATVRDKW-DITIWGTAQFRLRTKLRELKSCLKTLNDKHFX 1285
               K P++FFN   ++ +F+  VRD W  + + G++ FR+  KL+ LK  +K  +  ++ 
Sbjct: 243  IKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYS 302

Query: 1286 XXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFI 1465
                                  DP     + +L A R +   L+ AE+ FFRQK++  + 
Sbjct: 303  ELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAER-KWHILTAAEESFFRQKSRISWF 361

Query: 1466 IHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQH 1645
               D  +K+FH +       N IS+L   +G L +S E ++     ++  LLG       
Sbjct: 362  AEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVDPYL 421

Query: 1646 IDGDVINN------GPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKK 1807
            ++ + +N        P    E    L    S E+I  AL  +  +KS GPDGF+++FF  
Sbjct: 422  MEQNDMNLLLSYRCSPAQVCE----LESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFID 477

Query: 1808 AWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLS 1987
            +W+IVG + T+AI EFF SG LLK+WN  T+ LIPK  +     DFRPISC N  YKV++
Sbjct: 478  SWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIA 537

Query: 1988 KILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKA 2167
            ++L  RL  +L G+I  AQ+AF+ GRS+ +N+ L  +L+  YN    +PR  LK+DL+KA
Sbjct: 538  RLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKA 597

Query: 2168 FDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLS 2347
            FDSV W F+   L  L  P +F+ W+ +C++T ++++SIN             RQGDPLS
Sbjct: 598  FDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLS 657

Query: 2348 PYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLD 2527
            PYLFV+ +E  S L+  +  +   ++HPK   L+I+HL FADD+M+   G   S+  + +
Sbjct: 658  PYLFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICE 717

Query: 2528 CLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKV 2707
             LDDF S SGLK+N  KS++++AG+ + +S N  +      G++P RYLG+PL   +L++
Sbjct: 718  TLDDFASWSGLKVNKDKSHLYLAGLNQLES-NANAAYGFPIGTLPIRYLGLPLMNRKLRI 776

Query: 2708 AHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQIC 2887
            A YE L+ KI      W    LS+AGR +LI SV+ G   FW+S F +P     +I  +C
Sbjct: 777  AEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLC 836

Query: 2888 RNFLWGTGGKA----HIAWTTICLPKDEGGLGIRDLQA----------WNHSLLAKTLWN 3025
              FLW    +      ++W  +CLPK EGGLG+R L            W   +   +LW 
Sbjct: 837  SRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWA 896

Query: 3026 I-----HARKDSLWY-------RWIHHYYLHNRP-------------------FRDWTVA 3112
                  H  + S W         W     L  RP                   + +WT  
Sbjct: 897  DWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSL 956

Query: 3113 RSDSNLIKNI--YSIRTQILHKYGG-----NWQ----------------------KTEQQ 3205
                 +I +I   S+R  +L K         W+                       T Q+
Sbjct: 957  GPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQE 1016

Query: 3206 LVN---WHSNH---QVKGPKNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRI 3367
             V+   W  N    Q       +   R   T K WA  +W  G  PK++F +W++   R+
Sbjct: 1017 DVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRL 1076

Query: 3368 QTKDRL---GHLKLEDGTCNFCAAQPETAAHLFFNCPFSAAIWDGI-KEWTGISRQMTTL 3535
             T+ RL   GH  ++   C  C+   E+  HL   C FSA +W  + +      R  ++ 
Sbjct: 1077 LTRQRLASWGH--IQSDACVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSW 1134

Query: 3536 SSALKWLKKEARGTSKKSKGQKIAMATTVYQIWNARNRLI 3655
            S  L W+++ +       +  KI     VY +W  RN L+
Sbjct: 1135 SELLSWVRQSSPEAPPLLR--KIVSQVVVYNLWRQRNNLL 1172


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  535 bits (1377), Expect = e-149
 Identities = 305/914 (33%), Positives = 482/914 (52%), Gaps = 19/914 (2%)
 Frame = +2

Query: 410  MIIATWNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNN 589
            M +  WNIRG NS  +Q  V + I   N+ V   LET  +Q+  N  + + L GW   +N
Sbjct: 1    MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 590  FDLVKGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPL 769
            +   + GRI I W+ + +++ V     Q++          + F V+FVYG +S  DR+ L
Sbjct: 61   YCCSELGRIWIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSL 119

Query: 770  WEE---LNRIKQIVGRAWLIMGDFNSILNSNERR--NGVPIQPRDIKDFVNCSSVLGLTD 934
            WE+   L+R   +    WL++GDFN I  ++E    N   +  R ++D   C     L+D
Sbjct: 120  WEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSD 179

Query: 935  LPSTGHFFTWTN----NTVWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITN 1102
            LPS G FFTW+N    N +  KLDRA+ + +W    P A A F P G SDH+PC++ I N
Sbjct: 180  LPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDN 239

Query: 1103 ASAAGKTPWRFFNMWTEHDEFMATVRDKWDI-TIWGTAQFRLRTKLRELKSCLKTLNDKH 1279
                 K  +++F+  + H  ++A +   W+  T+ G+  F LR  L+  K C +TLN   
Sbjct: 240  QPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLNRLR 299

Query: 1280 FXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSK 1459
            F                    L   P++     +  A R++  F + A + FFRQK++ +
Sbjct: 300  FSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVA-RKQWIFFAAALESFFRQKSRIR 358

Query: 1460 FIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHT 1639
            ++   D  ++FFH  V  +   N I  L  DDG    + +Q+ G  + +Y  LLG    +
Sbjct: 359  WLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIP--S 416

Query: 1640 QHIDGDVINNGPLLAAENWDSLLRAV-----SKEEISYALNDVEYDKSPGPDGFSSKFFK 1804
            +++    +     L     DS L +      S+EEI+  L  +  +K+PGPDGF  +FF 
Sbjct: 417  ENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFI 476

Query: 1805 KAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVL 1984
            +AW IV      AI EFF+SG L + +N   + LIPK   + ++  FRP++CC   YKV+
Sbjct: 477  EAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVI 536

Query: 1985 SKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRK 2164
            ++I++ RL   +D  +   Q  F+KGR + +N+ L  EL+ ++     T R  L++D+ K
Sbjct: 537  TRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISK 596

Query: 2165 AFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPL 2344
            A+D+V+W FL  +L  L  P  F+ W+  C+++ASYS++ N             RQGDP+
Sbjct: 597  AYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPM 656

Query: 2345 SPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILL 2524
            S +LFV+ ++ LS+ +     N  FN HP C    ITHL+FADD+++ S G   S+  +L
Sbjct: 657  SSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGIL 716

Query: 2525 DCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLK 2704
              LDDF   SGL +N  K+ + + G     + ++     +T GS+P RYLG+PL +++++
Sbjct: 717  TILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMR 776

Query: 2705 VAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQI 2884
               Y+ L+ +I    + W+A  LS+AGR +L++SV+     FW S+F  PN    K+ Q+
Sbjct: 777  RQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQM 836

Query: 2885 CRNFLW----GTGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLW 3052
            C  FLW     +   A I+W  +C PK+ GGLG++ L +WN  L  K +W +     SLW
Sbjct: 837  CNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLW 896

Query: 3053 YRWIHHYYLHNRPF 3094
              W+  + +  R F
Sbjct: 897  VSWVRLHLIGRRNF 910


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  521 bits (1341), Expect = e-144
 Identities = 353/1111 (31%), Positives = 537/1111 (48%), Gaps = 43/1111 (3%)
 Frame = +2

Query: 446  SPLKQDEVFNLIREKNIDV----FG-LLETKASQQTINKFVDNRLNGWSSCNNFDLVKGG 610
            S  K  +  ++  +K  DV    FG +LET+  +  +          W   +N++  + G
Sbjct: 310  SSKKAHKFVSVPNQKATDVLPRQFGCVLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLG 369

Query: 611  RIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEELNRI 790
            RI + W+ + V ++VI    Q+I  L   +     F  SF+Y  + V +RK LW++L+ +
Sbjct: 370  RIWVVWS-SSVQLQVIFKSSQMIVCLVRVEHYDVEFICSFIYASNFVEERKKLWQDLHNL 428

Query: 791  KQIVG---RAWLIMGDFNSILNSNERRNGV--PIQPRDIKDFVNCSSVLGLTDLPSTGHF 955
            +  V    + WL+ GDFN  L   E  +    P+    ++DF        L D+ + G  
Sbjct: 429  QNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPL 488

Query: 956  FTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGKT 1123
            FTW N      +  KLDR +++ ++    PH+       G SDH     ++ +A    K 
Sbjct: 489  FTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCIMDSGGCSDHLRGRFHLRSAIQKPKG 548

Query: 1124 PWRFFNMWTEHDEFMATVRDKWDITIW----GTAQFRLRTKLRELKSCLKTLNDKHFXXX 1291
            P++F N+   H EFM  V D W  T       +  FR   KL+ELK  LK L+       
Sbjct: 549  PFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFSKKLKELKPILKDLS------- 601

Query: 1292 XXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIH 1471
                                        N L  L  R+++   A ++  R + KS   ++
Sbjct: 602  ---------------------------RNNLSDLTRRATY---AYEELCRCQTKSLTTLN 631

Query: 1472 SDKC---SKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLG------ 1624
                   S  F    K     N I  +    GT   + + +  E + F+  LL       
Sbjct: 632  PHDIVDESLAFERWEKERHLLNAIHEVMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDF 691

Query: 1625 TAQHTQHIDGDVINNGPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFK 1804
            T      + G ++     L  +N   L+  +++ E+      +  +KSPGPDG++ +FF+
Sbjct: 692  TGISVDELKG-ILQYRYSLHEQNL--LVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFR 748

Query: 1805 KAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVL 1984
            + W+++G + T AI  FF  G L K  N   +ALIPK  ++ ++ D+RPISCCNV YK +
Sbjct: 749  ETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAI 808

Query: 1985 SKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRK 2164
            SK+LA RL  +L   I   Q+AF+  R +++N+ L  EL++ Y++   +PRC +KIDL K
Sbjct: 809  SKLLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSK 868

Query: 2165 AFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPL 2344
            AFDSV W FL   L  L  P +F+ W+  C++TAS+S+ +N             RQG  L
Sbjct: 869  AFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN-----------GLRQGCSL 917

Query: 2345 SPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILL 2524
            SPYLFVIC+  LS ++ K      F +HP+C  + +THL FADD+M+ S G   S++ +L
Sbjct: 918  SPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVL 977

Query: 2525 DCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLK 2704
                DF + SGL +++ KS +FMA I      +IL+      GS+P RYLG+PL  +R+ 
Sbjct: 978  AIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMT 1037

Query: 2705 VAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQI 2884
            +A    L+ KIR  IS W    LSYAGR +L+ SV+  +  FW+S F +P +   +I QI
Sbjct: 1038 LADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQI 1097

Query: 2885 CRNFLW-GTG---GKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLW 3052
               FLW GT     KA +AW  +C PK EGGLG+R L   N     K +W + + K SLW
Sbjct: 1098 SAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLW 1157

Query: 3053 YRWIHHYYLHNRPFRDWTVARSDSNLIKNIYSIRTQILHKYGGNWQK-------TEQQLV 3211
              WI +  +        TVA + S+  +   S R  IL+      +K       TEQ   
Sbjct: 1158 VNWIQNNLIR-------TVAEALSSHRRR--SHRDDILNDIEEELEKLLCRGICTEQDRS 1208

Query: 3212 NWHS-NHQVKG---PKNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKD 3379
               S   Q K       +++  R+ G  K W   +W SG TPK +F  WLAAH R+ T D
Sbjct: 1209 LCRSIGGQFKAKFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGD 1268

Query: 3380 RLGHLKLE-DGTCNFCAAQPETAAHLFFNCPFSAAIWDGIKEWTGISRQMTTLSSALKWL 3556
            ++          C  C    E+  HLFF+C FS+ IWD +     + R  T   + L  L
Sbjct: 1269 KMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLL 1328

Query: 3557 KKEARGTSKKSKGQKIAMATTVYQIWNARNR 3649
              +    +K+   + +  A T++ +W  RN+
Sbjct: 1329 SGQDFSGTKRFLLRYVFQA-TIHTLWRERNK 1358


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  517 bits (1331), Expect = e-143
 Identities = 313/898 (34%), Positives = 475/898 (52%), Gaps = 22/898 (2%)
 Frame = +2

Query: 425  WNIRGFNSPLKQDEVFNLIREKNIDVFG-LLETKASQQTINKFVDNRLNGWSSCNNFDLV 601
            WN+RGFN    +   F      N  +FG L+ET   Q    KF+ N L GWS   N++  
Sbjct: 8    WNVRGFNISSHR-RGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66

Query: 602  KGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEEL 781
              G+I + W+ + V + VIG   Q+I        +   F VS VY  +  G RK LW EL
Sbjct: 67   VLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 782  NRIKQ---IVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGLTDLPSTGH 952
             ++     +VGR+W+++GDFN ILN     N      R I+ F +C     L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINANI--GRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 953  FFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGK 1120
             +TW N      +  K+DR +V++ W    P A A+F     SDHS C V +  A    K
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLKAK 243

Query: 1121 TPWRFFNMWTEHDEFMATVRDKW-DITIWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXX 1297
             P+RFFN +  + +F+  +R+ W    + G+A +R+  KL+ LK  +   + +++     
Sbjct: 244  RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303

Query: 1298 XXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSD 1477
                              +P+      +L A R +   L+ AE+ FF QK+   ++   D
Sbjct: 304  RVSEAHAIVLHRQRITLTNPSVVHATLELEATR-KWQILAKAEESFFCQKSSISWLYEGD 362

Query: 1478 KCSKFFHAIVKRNAKRNFISSLTRDDG----TLTNSTEQVVGEFLGFYKGLLGTAQHTQH 1645
              + +FH +       N I+ L  D G    T     E +      F++ LL   +    
Sbjct: 363  NNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENS 422

Query: 1646 IDGDVINNGPLL-----AAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKA 1810
            +    +N   LL     + +  + L R+ S  +I  A   +  +K+ GPDG+SS+FFK  
Sbjct: 423  LAQSDMN---LLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479

Query: 1811 WNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSK 1990
            W +VG + TEA+ EFF SG+LLK+WN  T+ LIPK  +S K+ DFRPISC N  YKV++K
Sbjct: 480  WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539

Query: 1991 ILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAF 2170
            +L +RL  +L+ +I  +Q+AF+ GR + +N+ L  E++  YN K  + R  LK+DLRKAF
Sbjct: 540  LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAF 599

Query: 2171 DSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSP 2350
            DSV W F+      L  P +FV W+ +C++T  +S+ +N             RQGDPLSP
Sbjct: 600  DSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSP 659

Query: 2351 YLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDC 2530
            YLFV+ +E  S L++ +    + ++HPK   L+I+HL FADD+M+   G   S+  + + 
Sbjct: 660  YLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEA 719

Query: 2531 LDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVA 2710
            LDDF S SGL +N  K+N+++AG  E ++L I  +      ++P RYLG+PL + +LK++
Sbjct: 720  LDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHYG-FPISTLPIRYLGLPLMSRKLKIS 778

Query: 2711 HYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICR 2890
             Y EL+ + R     W+  +LS+AGR +LI SV+ G+  FW+S F +      KI  +C 
Sbjct: 779  EY-ELVKRFR----SWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCS 833

Query: 2891 NFLWG----TGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLW 3052
             FLW         A IAW+ +CLPK+EGG+G+R    WN +   + +W + A  D LW
Sbjct: 834  RFLWSGSIDASKGAKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  514 bits (1324), Expect = e-142
 Identities = 312/898 (34%), Positives = 473/898 (52%), Gaps = 22/898 (2%)
 Frame = +2

Query: 425  WNIRGFNSPLKQDEVFNLIREKNIDVFG-LLETKASQQTINKFVDNRLNGWSSCNNFDLV 601
            WN+RGFN    +   F      N  +FG L+ET   Q    KF+ N L GWS   N++  
Sbjct: 8    WNVRGFNISSHR-RGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFS 66

Query: 602  KGGRIAIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEEL 781
              G+I + W+ + V + VIG   Q+I        +   F VS VY  +  G RK LW EL
Sbjct: 67   VLGKIWVLWDPS-VKVVVIGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELWNEL 125

Query: 782  NRIKQ---IVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGLTDLPSTGH 952
             ++     +VGR+W+++GDFN ILN     N      R I+ F +C     L DL   G 
Sbjct: 126  VQLALSPVVVGRSWIVLGDFNQILNPESAINANI--GRKIRAFRSCLLDSDLYDLVYKGS 183

Query: 953  FFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGK 1120
             +TW N      +  K+DR +V++ W    P A A+F     SDHS C V +  A    K
Sbjct: 184  SYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPDFSDHSSCEVVLDPAVLKAK 243

Query: 1121 TPWRFFNMWTEHDEFMATVRDKW-DITIWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXX 1297
             P+RFFN +  + +F+  +R+ W    + G+A +R+  KL+ LK  +   + +++     
Sbjct: 244  RPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYSDIEK 303

Query: 1298 XXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSD 1477
                              +P+      +L A R +   L+ AE+ FF QK+   ++   D
Sbjct: 304  RVSEAHAIVLHRQRITLTNPSVVHATLELEATR-KWQILAKAEESFFCQKSSISWLYEGD 362

Query: 1478 KCSKFFHAIVKRNAKRNFISSLTRDDG----TLTNSTEQVVGEFLGFYKGLLGTAQHTQH 1645
              + +FH +       N I+ L  D G    T     E +      F++ LL   +    
Sbjct: 363  NNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVEGENS 422

Query: 1646 IDGDVINNGPLL-----AAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKA 1810
            +    +N   LL     + +  + L R+ S  +I  A   +  +K+ GPDG+SS+FFK  
Sbjct: 423  LAQSDMN---LLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479

Query: 1811 WNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSK 1990
            W +VG + TEA+ EFF SG+LLK+WN  T+ LIPK  +S K+ DFRPISC N  YKV++K
Sbjct: 480  WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539

Query: 1991 ILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAF 2170
            +L +RL  +L+ +I  +Q+AF+ GR + +N+ L  E++  YN K  + R  LK+DLRKAF
Sbjct: 540  LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAF 599

Query: 2171 DSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSP 2350
            DSV W F+      L  P +FV W+ +C++T  +S+ +N             RQGDPLSP
Sbjct: 600  DSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSP 659

Query: 2351 YLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDC 2530
            YLFV+ +E  S L++ +    +  +HPK   L+I+HL FADD+M+   G   S+  + + 
Sbjct: 660  YLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEA 719

Query: 2531 LDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVA 2710
            LDDF S SGL +N  K+N+++AG  E ++L I  +      ++P RYLG+PL + +LK++
Sbjct: 720  LDDFASWSGLHVNKDKTNLYLAGTDEVEALAISHYG-FPISTLPIRYLGLPLMSRKLKIS 778

Query: 2711 HYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICR 2890
             Y EL+ + R     W+  +LS+AGR +LI SV+ G+  FW+S F +      KI  +C 
Sbjct: 779  EY-ELVKRFR----SWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCS 833

Query: 2891 NFLWG----TGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLW 3052
             FLW         A IAW+ +CLPK+EGG+ +R    WN +   + +W + A  D LW
Sbjct: 834  RFLWSGSIDASKGAKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  504 bits (1297), Expect = e-139
 Identities = 274/794 (34%), Positives = 441/794 (55%), Gaps = 15/794 (1%)
 Frame = +2

Query: 818  IMGDFNSILNSNERRNGVPIQ-PRDIKDFVNCSSVLGLTDLPSTGHFFTWTNNT----VW 982
            ++GDFN +L   E  N   +   R ++DF +C S + L+DL   G+ FTW N +    + 
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 983  SKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGKTPWRFFNMWTEHDE 1162
             KLDR + ++ W    P +   F     SDH  C V +     + K P++FFN   ++++
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNED 120

Query: 1163 FMATVRDKWDIT-IWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXX 1339
            F+  V D W  T + G++ +R+  KL+ +K  +K  +  ++                   
Sbjct: 121  FLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQN 180

Query: 1340 GLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNA 1519
                +P+    A +L A R +   LS AE+ FF Q+++  +    D  + +FH +V    
Sbjct: 181  LTLANPSVSNAALELEAQR-KWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRK 239

Query: 1520 KRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDGDVINNGPLL-----A 1684
              N I+SL   +G L +S + ++   + +Y+ LLG+ +    ++ + +N   LL     +
Sbjct: 240  SFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMN---LLLTYRCS 296

Query: 1685 AENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIVGVDFTEAINEFFVS 1864
             +    L ++ + +EI  A   +  +K+ GPDG+S +FF+  W+I+G +   AI+EFF S
Sbjct: 297  QDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDS 356

Query: 1865 GRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILATRLSSVLDGIIDGAQ 2044
            G+LLK+WN  T+ LIPKT+++  + +FRPISC N  YKV+SK+L +RL  +L  +I  +Q
Sbjct: 357  GQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQ 416

Query: 2045 AAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWTFLREVLDGLGFP 2224
            +AF+ GRS+ +N+ L  E++  YNR   +PR  LK+DL+KAFDSV W F+   L  L  P
Sbjct: 417  SAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIP 476

Query: 2225 PRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVICLEYLSRLIRKKT 2404
             R++ W+ +C+TT S+++S+N             RQGDPLSPYLFV+ +E  S+L+  + 
Sbjct: 477  ERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRY 536

Query: 2405 TNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDFGSKSGLKMNILKSN 2584
             + + ++HPK G L+I+HL FADD+M+   G   S+  + + LDDF   SGLK+N  KS 
Sbjct: 537  DSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQ 596

Query: 2585 IFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELIAKIREYISGWSA 2764
            +F AG+   + +   ++     G+ P RYLG+PL   +L++A Y  L+ K+   +  W +
Sbjct: 597  LFQAGLDLSERITSAAYG-FPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVS 655

Query: 2765 STLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWG---TGGK-AHIAW 2932
              LS+AGRT+LI SV+ G+  FW+S F +P     KI  +C  FLW     G K + ++W
Sbjct: 656  KALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715

Query: 2933 TTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLWYRWIHHYYLHNRPFRDWTVA 3112
               CLPK EGGLG R    WN +LL + +W +  R  SLW +W  H+ L +  F      
Sbjct: 716  VDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNAL 775

Query: 3113 RSDSNLIKNIYSIR 3154
            ++D    K + ++R
Sbjct: 776  QTDPWTWKMLLNLR 789



 Score = 66.6 bits (161), Expect = 8e-08
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
 Frame = +2

Query: 3284 KPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKL-EDGTCNFCAAQPETAAHLFF 3460
            K WA  VW  G  PKH+F  W A   R+ T+ RL    L     C  C+   ET  HL  
Sbjct: 908  KRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLL 967

Query: 3461 NCPFSAAIWDGI-KEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQKIAMATTVYQIWN 3637
             C FS+ +W  +        R + T +  L W ++     +  S  +K+     VY +W 
Sbjct: 968  LCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQST--AAAPSLLRKVVAQLVVYNLWR 1025

Query: 3638 ARNRLIFEGEVLHIDFVIHKIKTHIYKIMYS 3730
             RN ++     +    V   +   +  ++ S
Sbjct: 1026 QRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  504 bits (1297), Expect = e-139
 Identities = 274/794 (34%), Positives = 441/794 (55%), Gaps = 15/794 (1%)
 Frame = +2

Query: 818  IMGDFNSILNSNERRNGVPIQ-PRDIKDFVNCSSVLGLTDLPSTGHFFTWTNNT----VW 982
            ++GDFN +L   E  N   +   R ++DF +C S + L+DL   G+ FTW N +    + 
Sbjct: 1    MLGDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIA 60

Query: 983  SKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGKTPWRFFNMWTEHDE 1162
             KLDR + ++ W    P +   F     SDH  C V +     + K P++FFN   ++++
Sbjct: 61   KKLDRILANDSWCNLYPSSHGLFGNLDFSDHVSCGVVLEANGISAKRPFKFFNFLLKNED 120

Query: 1163 FMATVRDKWDIT-IWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXX 1339
            F+  V D W  T + G++ +R+  KL+ +K  +K  +  ++                   
Sbjct: 121  FLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITCQN 180

Query: 1340 GLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNA 1519
                +P+    A +L A R +   LS AE+ FF Q+++  +    D  + +FH +V    
Sbjct: 181  LTLANPSVSNAALELEAQR-KWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRK 239

Query: 1520 KRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDGDVINNGPLL-----A 1684
              N I+SL   +G L +S + ++   + +Y+ LLG+ +    ++ + +N   LL     +
Sbjct: 240  SFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIESPFSMEQEDMN---LLLTYRCS 296

Query: 1685 AENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIVGVDFTEAINEFFVS 1864
             +    L ++ + +EI  A   +  +K+ GPDG+S +FF+  W+I+G +   AI+EFF S
Sbjct: 297  QDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDS 356

Query: 1865 GRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILATRLSSVLDGIIDGAQ 2044
            G+LLK+WN  T+ LIPKT+++  + +FRPISC N  YKV+SK+L +RL  +L  +I  +Q
Sbjct: 357  GQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQ 416

Query: 2045 AAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWTFLREVLDGLGFP 2224
            +AF+ GRS+ +N+ L  E++  YNR   +PR  LK+DL+KAFDSV W F+   L  L  P
Sbjct: 417  SAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIP 476

Query: 2225 PRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVICLEYLSRLIRKKT 2404
             R++ W+ +C+TT S+++S+N             RQGDPLSPYLFV+ +E  S+L+  + 
Sbjct: 477  ERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRY 536

Query: 2405 TNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDFGSKSGLKMNILKSN 2584
             + + ++HPK G L+I+HL FADD+M+   G   S+  + + LDDF   SGLK+N  KS 
Sbjct: 537  DSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQ 596

Query: 2585 IFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELIAKIREYISGWSA 2764
            +F AG+   + +   ++     G+ P RYLG+PL   +L++A Y  L+ K+   +  W +
Sbjct: 597  LFQAGLDLSERITSAAYG-FPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVS 655

Query: 2765 STLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWG---TGGK-AHIAW 2932
              LS+AGRT+LI SV+ G+  FW+S F +P     KI  +C  FLW     G K + ++W
Sbjct: 656  KALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSW 715

Query: 2933 TTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLWYRWIHHYYLHNRPFRDWTVA 3112
               CLPK EGGLG R    WN +LL + +W +  R  SLW +W  H+ L +  F      
Sbjct: 716  VDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNAL 775

Query: 3113 RSDSNLIKNIYSIR 3154
            ++D    K + ++R
Sbjct: 776  QTDPWTWKMLLNLR 789



 Score = 66.6 bits (161), Expect = 8e-08
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
 Frame = +2

Query: 3284 KPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKL-EDGTCNFCAAQPETAAHLFF 3460
            K WA  VW  G  PKH+F  W A   R+ T+ RL    L     C  C+   ET  HL  
Sbjct: 908  KRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLCSFDTETRDHLLL 967

Query: 3461 NCPFSAAIWDGI-KEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQKIAMATTVYQIWN 3637
             C FS+ +W  +        R + T +  L W ++     +  S  +K+     VY +W 
Sbjct: 968  LCDFSSQVWRMVFLRLCPRQRLLCTWAELLSWTRQST--AAAPSLLRKVVAQLVVYNLWR 1025

Query: 3638 ARNRLIFEGEVLHIDFVIHKIKTHIYKIMYS 3730
             RN ++     +    V   +   +  ++ S
Sbjct: 1026 QRNLVLHSSLRVSCSVVFRLVDRELRNVILS 1056


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  489 bits (1260), Expect = e-135
 Identities = 334/1109 (30%), Positives = 525/1109 (47%), Gaps = 20/1109 (1%)
 Frame = +2

Query: 437  GFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNNFDLVKGGRI 616
            G NS  +Q  V + I   N+ V   LET  +Q+  N  + + L GW   +N+   + GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 617  AIFWNMAKVNIEVIGFHPQVIHTLATCKITQRIFFVSFVYGLHSVGDRKPLWEE---LNR 787
             I W+ + +++ V     Q++          + F V+FVYG +S  DR+ LWE+   L+R
Sbjct: 113  WIVWDPS-ISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLWEDILVLSR 171

Query: 788  IKQIVGRAWLIMGDFNSILNSNERR--NGVPIQPRDIKDFVNCSSVLGLTDLPSTGHFFT 961
               +    WL++GDFN I  ++E    N   +  R ++D   C     L+DLPS G FFT
Sbjct: 172  TSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVFFT 231

Query: 962  WTN----NTVWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGKTPW 1129
            W+N    N +  KLDRA+ + +W    P A A F P G SDH+PC++ I N     K  +
Sbjct: 232  WSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGDSDHAPCIILIDNQPPPSKKSF 291

Query: 1130 RFFNMWTEHDEFMATVRDKWDI-TIWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXXXXX 1306
            ++F+  + H  ++A +   W+  T+ G+  F LR  L+  K C +TLN   F        
Sbjct: 292  KYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQRTA 351

Query: 1307 XXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSDKCS 1486
                        L   P++     +  A R++  F + A + FFRQK++ +++   D  +
Sbjct: 352  QSLTRLEDIQVELLTSPSDTLFRREHVA-RKQWIFFAAALESFFRQKSRIRWLHEGDANT 410

Query: 1487 KFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDGDVIN 1666
            +FFH  V  +   N I  L  DDG    + +Q+ G  + +Y  LLG    ++++    + 
Sbjct: 411  RFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIP--SENVTPFSVE 468

Query: 1667 NGPLLAAENWDSLLRAV-----SKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIVGVD 1831
                L     DS L +      S+EEI+  L  +  +K+PGPDGF  +FF +AW IV   
Sbjct: 469  KIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSS 528

Query: 1832 FTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILATRLS 2011
               AI EFF+SG L + +N   + LIPK   + ++  FRP++CC   YKV+++I++ RL 
Sbjct: 529  VVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLK 588

Query: 2012 SVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWTF 2191
              +D  +   Q  F+KGR + +N+ L  EL+ ++     T R  L++D+ KA+D+V+W F
Sbjct: 589  LFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEF 648

Query: 2192 LREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVICL 2371
            L  +L  L  P  F+ W+  C+++ASYS++ N             RQGDP+S +LFV+ +
Sbjct: 649  LINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVM 708

Query: 2372 EYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDFGSK 2551
            + LS+ +     N  FN HP C    ITHL+FADD+++ S G   S+  +L  LDDF   
Sbjct: 709  DVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQG 768

Query: 2552 SGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELIA 2731
            SGL +N  K+ + + G     + ++     +T GS+P RYLG+PL +++++   Y+ L+ 
Sbjct: 769  SGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVD 828

Query: 2732 KIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWGTG 2911
            +I    + W+A  LS+AGR +L+  +       W  +  +    R  I  IC      T 
Sbjct: 829  RINSRFTSWTARHLSFAGRLQLLNWI-------WRKLCKLRPFARPFI--ICEVGSGVTA 879

Query: 2912 GKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSLWYRWIHHYYLHNRP 3091
               H  WT      D G L    L      LLA    N   R D+L              
Sbjct: 880  SFWHDNWT------DHGPL--LHLTGPAGPLLAGLPLNSVVR-DAL-------------- 916

Query: 3092 FRDWTVARSDSNLIKNIYSIRTQILHKYGGNWQKTEQQLVNWHSNHQVKGPK----NVYN 3259
             RD T   S S     + ++  ++L                W   H     +    + ++
Sbjct: 917  -RDDTWRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTYLWKIGHHAPSNRFSTADTWS 975

Query: 3260 FFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLE-DGTCNFCAAQP 3436
            + + + T   W   VW     PK +F  W+ AH R+ T+DRL         TC  C    
Sbjct: 976  YLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLD 1035

Query: 3437 ETAAHLFFNCPFSAAIWDGIKEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQKIAMAT 3616
            E+  HLFF C FS+ IW        ++         L W    +R  +  +   K+    
Sbjct: 1036 ESREHLFFRCQFSSEIWSFFMRALNLN-PPPQFMHCLLWTLTASRDRN-ITLITKLLFHA 1093

Query: 3617 TVYQIWNARNRLIFEGEVLHIDFVIHKIK 3703
            +VY IW  RN  I    V     +I +I+
Sbjct: 1094 SVYFIWRERNLRIHSNSVRPAHLIIKEIQ 1122


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  488 bits (1256), Expect = e-135
 Identities = 317/1049 (30%), Positives = 512/1049 (48%), Gaps = 56/1049 (5%)
 Frame = +2

Query: 722  VSFVYGLHSVGDRKPLWEELNRIKQIV---GRAWLIMGDFNSILNSNERRNGVPIQP-RD 889
            VS VY  +    RK LWEEL  +   +   G+ W+++GDFN +L   E      +   R 
Sbjct: 55   VSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRR 114

Query: 890  IKDFVNCSSVLGLTDLPSTGHFFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLP 1057
            +K F +C     L DL   G+ FTW N +    V  KLDR +V+  W    P A A F  
Sbjct: 115  MKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGE 174

Query: 1058 SGLSDHSPCVVNITNASAAGKTPWRFFNMWTEHDEFMATVRDKW-DITIWGTAQFRLRTK 1234
               SDH+ C V I       K P+RF+N   ++ +F++ V + W  I + G++ F++  K
Sbjct: 175  PDFSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKK 234

Query: 1235 LRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFL 1414
            L+ LK+ ++T + ++F                      +DP     A ++ A R +   L
Sbjct: 235  LKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQR-KWLIL 293

Query: 1415 SNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGE 1594
              AE+ FF Q+++  ++   D  + +FH +       N I  +  D+G   ++   +   
Sbjct: 294  VKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEH 353

Query: 1595 FLGFYKGLLGTAQHTQHIDGDVINNGPLLAAENWDSLL-------------RAVSKEEIS 1735
             + ++  LLG         G+V    P+L  E++D LL              + S+++I 
Sbjct: 354  CIEYFSNLLG---------GEV--GPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIK 402

Query: 1736 YALNDVEYDKSPGPDGFSSKFFKKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPK 1915
             A      +K+ GPDGF  +FFK+ W+++G + T+A++EFF S  LLK+WN  T+ LIPK
Sbjct: 403  SAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPK 462

Query: 1916 TAHSPKVGDFRPISCCN----VFYKVLSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNI 2083
              ++ K+ DFRPISC +      YKV++++L  RL  +L  +I   Q+AF+ GR + +N+
Sbjct: 463  ITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENV 522

Query: 2084 HLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTT 2263
             L  EL++ YNR+   PR  LK+DLRKAFDS+ W F+   L  +G P RFV W+ +C++T
Sbjct: 523  LLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCIST 582

Query: 2264 ASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGP 2443
             ++S+ +N             RQG+PLSP+LFV+ +E  S L+  +    + ++HPK  P
Sbjct: 583  PTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSP 642

Query: 2444 LNITHLAFADDLMMLSRGDPISVKILLDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLN 2623
            L+I+HL FADD+M+   G   S+  + + L+DF   SGL +N  K+++++AG+   ++  
Sbjct: 643  LSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRIEAST 702

Query: 2624 ILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELIAKIREYISGWSASTLSYAGRTELIR 2803
            I                     A +L++A Y  L+ K+ +    WS   LS+AGR +LI 
Sbjct: 703  I---------------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIA 741

Query: 2804 SVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWG----TGGKAHIAWTTICLPKDEGGLG 2971
            SV+ G+  FW+S F +P     +I  +C  FLW         A +AW+ +CLPK+EGG+G
Sbjct: 742  SVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVG 801

Query: 2972 IRDLQAWNHSLLAKTLWNIHARKDSLWY-RW-----IHHYYLHNRPFR------------ 3097
            +R       ++L  TLW+   +K S W+  W     +   +  + P              
Sbjct: 802  LR-----RFTVLNTTLWD--GKKISFWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADA 854

Query: 3098 ----DWTVA--RSDSNLIKNIYSIRTQILHKYGGNWQKTEQQLVNWHSNHQVKGPKNVYN 3259
                 W ++  R+D  L   I+   T I      +   T   +V+  + H     +  + 
Sbjct: 855  CSDVGWLISPPRTDQALALLIH--LTTIALPCFDSSPDTFVWIVDDFTCHGFSAAR-TWE 911

Query: 3260 FFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLEDGT-CNFCAAQP 3436
              R     K W   VW  G  PKH+F +W++   R+ T+ RL    +   T C  C+++P
Sbjct: 912  AMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRP 971

Query: 3437 ETAAHLFFNCPFSAAIWDGI-KEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQKIAMA 3613
            E+  HL   C FSA IW  +    T       + +  L W +     +   S  +KIA  
Sbjct: 972  ESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSWTR--INSSKAPSLLRKIAAQ 1029

Query: 3614 TTVYQIWNARNRLIFEGEVLHIDFVIHKI 3700
             +V+ +W  RN ++     +    V H I
Sbjct: 1030 ASVFHLWKQRNNVLHNSIFISPATVFHFI 1058


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  481 bits (1239), Expect = e-133
 Identities = 273/795 (34%), Positives = 416/795 (52%), Gaps = 15/795 (1%)
 Frame = +2

Query: 722  VSFVYGLHSVGDRKPLWEELNRIKQ---IVGRAWLIMGDFNSILNSNERRNGVPIQ-PRD 889
            +SFVY       R+ LW E+        ++ + W ++GDFN IL+ +E          R 
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 890  IKDFVNCSSVLGLTDLPSTGHFFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLP 1057
             + F     +  LTDL   G+ FTW N      V  KLDR +V++ W    P +   F  
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGE 122

Query: 1058 SGLSDHSPCVVNITNASAAGKTPWRFFNMWTEHDEFMATVRDKWDIT-IWGTAQFRLRTK 1234
               SDHS C +++ +AS   K P+RF N   + + F++ +  KW  T + G+A +R+  K
Sbjct: 123  PDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSVK 182

Query: 1235 LRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFL 1414
            L+ LK  ++  +  ++                    L   P     A +    R +   L
Sbjct: 183  LKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQR-KWRIL 241

Query: 1415 SNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGE 1594
            + AE  FF Q+++  ++   D  S +FH +       N I  L+   G      + +   
Sbjct: 242  AEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENH 301

Query: 1595 FLGFYKGLLGTAQHTQHIDGDVINN--GPLLAAENWDSLLRAVSKEEISYALNDVEYDKS 1768
             + +++  LG+ Q     +   I+N      +     SL    S E+I  A   +  +K+
Sbjct: 302  CVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKA 361

Query: 1769 PGPDGFSSKFFKKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFR 1948
             GPDGFS +FF   W I+G + TEAI+EFF SG+LLK+WN   + LIPK  ++  + DFR
Sbjct: 362  SGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFR 421

Query: 1949 PISCCNVFYKVLSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRT 2128
            PISC N  YKV+SK+L  RL   L   I  +Q+AF+ GR  ++N+ L  EL+  YN+K  
Sbjct: 422  PISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKKNI 481

Query: 2129 TPRCTLKIDLRKAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXX 2308
             P   LK+DLRKAFDSV W F+   L  L  P +F  W++EC++TAS+S+ +N       
Sbjct: 482  APSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAGHF 541

Query: 2309 XXXXXXRQGDPLSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMML 2488
                  RQGDP+SPYLFV+ +E  S L++ + T+ +  +HPK   L I+HL FADD+M+ 
Sbjct: 542  WSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIF 601

Query: 2489 SRGDPISVKILLDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFR 2668
              G   S+  +++ L+DF   SGL MN  K+ ++ AG+ + +S ++ S+     GS+P R
Sbjct: 602  FDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASYG-FKLGSLPVR 660

Query: 2669 YLGIPLAAERLKVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFP 2848
            YLG+PL + +L +A Y  LI KI    + W    LS+AGR +L+ SV+ G+  FW+S F 
Sbjct: 661  YLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFI 720

Query: 2849 IPNSVRDKIIQICRNFLWGT----GGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKT 3016
            +P     KI  +C  FLW +     G A +AW+ +CLPK EGG+G+R     N +L  + 
Sbjct: 721  LPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRM 780

Query: 3017 LWNIHARKDSLWYRW 3061
            +W + +   SLW  W
Sbjct: 781  IWLLFSNSGSLWVAW 795



 Score = 68.6 bits (166), Expect = 2e-08
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +2

Query: 3254 YNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLE-DGTCNFCAA 3430
            ++  R +    PWA  VW  G TPKH+F LW A   R+ TK RL    ++ D TC  C+ 
Sbjct: 936  WSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSL 995

Query: 3431 QPETAAHLFFNCPFS 3475
             PET  HLF +C F+
Sbjct: 996  HPETRDHLFLSCDFA 1010


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  452 bits (1163), Expect = e-124
 Identities = 270/795 (33%), Positives = 417/795 (52%), Gaps = 25/795 (3%)
 Frame = +2

Query: 755  DRKPLWEELNRIKQ---IVGRAWLIMGDFNSILNSNERRNGV--PIQPRDIKDFVNCSSV 919
            +RK LW +L        I  + W+I GDFN IL+  E  N    P+    ++DF    + 
Sbjct: 3    ERKELWNDLRDHSDSPIIRSKPWIIFGDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNH 62

Query: 920  LGLTDLPSTGHFFTWTN----NTVWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCV 1087
              +TDL   G  FTW+N    + +  KLDR +V++ W+   P + + F   G SDH  C 
Sbjct: 63   CSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPRSYSVFEAGGCSDHLRCR 122

Query: 1088 VNITNASAA---GKTPWRFFNMWTEHDEFMATVRDKWDIT----IWGTAQFRLRTKLREL 1246
            +N+   + A   GK P++F N+ TE + F+ TV   W+ T    +  ++ FR   KL+ L
Sbjct: 123  INLNVGAGAVVKGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGL 182

Query: 1247 KSCLKTLNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAE 1426
            K  L+ L  +                         +P+   +  +  A   +   ++  E
Sbjct: 183  KPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYA-KWDHIAVLE 241

Query: 1427 KQFFRQKAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGF 1606
            ++F +Q++K  ++   D+ +K FH  V     +N I  +   DG++ +  E++  E    
Sbjct: 242  EKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEHH 301

Query: 1607 YKGLLGTAQHTQHIDGDVINN-GPLLAAENWDS----LLRAVSKEEISYALNDVEYDKSP 1771
            ++  L    +    +G  +     LL     DS    L   VS EEI   +  +  DKSP
Sbjct: 302  FREFLQLIPND--FEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSP 359

Query: 1772 GPDGFSSKFFKKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRP 1951
            GPDG++++F+K AWNI+G +F  AI  FF  G L K  N   +ALIPK   + ++ D+RP
Sbjct: 360  GPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRP 419

Query: 1952 ISCCNVFYKVLSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTT 2131
            ISCCNV YKV+SKI+A RL  VL   I G Q+AFVK R +++N+ L  E+++ Y++   +
Sbjct: 420  ISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVS 479

Query: 2132 PRCTLKIDLRKAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXX 2311
             RC LKID+ KAFDSV W FL  VL+ + FPP F  W+  C+TTAS+S+ +N        
Sbjct: 480  SRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFS 539

Query: 2312 XXXXXRQGDPLSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLS 2491
                 RQG  LSPYLFVI ++ LS+++ K      F +HPKC  + +THL+FADDLM+LS
Sbjct: 540  SARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILS 599

Query: 2492 RGDPISVKILLDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRY 2671
             G   S+  ++  L +F   SGLK+++ KS +++AG++      I+       G +P RY
Sbjct: 600  DGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRY 659

Query: 2672 LGIPLAAERLKVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPI 2851
            LG+PL ++RL  +    LI ++R+ I  W++  LS+AGR  LI S +  +  FW++ F +
Sbjct: 660  LGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRL 719

Query: 2852 PNSVRDKIIQICRNFLWG----TGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTL 3019
            P +   +I ++C  FLW     +  KA ++W  IC PK E         AW+     K +
Sbjct: 720  PRACIREIDKLCSAFLWSGTELSSNKAKVSWEAICKPKKE---------AWH-----KGV 765

Query: 3020 WNIHARKDSLWYRWI 3064
            W  H      +  W+
Sbjct: 766  WFAHETPKHSFCVWL 780



 Score = 67.4 bits (163), Expect = 5e-08
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
 Frame = +2

Query: 3281 KKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHLKLEDGT-CNFCAAQPETAAHLF 3457
            K+ W   VW +  TPKHSF +WLA   ++ T  R+ H  L+    C  C    ET  HLF
Sbjct: 758  KEAWHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLF 817

Query: 3458 FNCPFSAAIWDGIKEWTGISRQMTTLSSALKWLKKEARGTSKKSKGQKIAMATTVYQIWN 3637
            F+C +++ IW+ + +        T   + + ++  +          + +  A +VY IW 
Sbjct: 818  FSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCFLARSVLQA-SVYTIWR 876

Query: 3638 ARN 3646
             RN
Sbjct: 877  ERN 879


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  437 bits (1124), Expect = e-119
 Identities = 276/892 (30%), Positives = 420/892 (47%), Gaps = 12/892 (1%)
 Frame = +2

Query: 1034 HAAAHFLPSGLSDHSPCVVNITNASAAGKTPWRFFNMWTEHDEFMATVRDKWDITIWGTA 1213
            ++   FLP G+SDH+  VV +       K P++FFN   + ++F+  V   W   +WG+ 
Sbjct: 136  YSVLSFLPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATNVWGSK 195

Query: 1214 QFRLRTKLRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPAL 1393
            QF++  KL+ +K+  K LN                                         
Sbjct: 196  QFQVWRKLKLVKNQFKLLN----------------------------------------- 214

Query: 1394 RERSSFLSNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNS 1573
                    N  ++  ++K++ +++   DK S FF   + ++  RN I+++ R DG     
Sbjct: 215  -------CNVVEKLLKKKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRSDG----- 262

Query: 1574 TEQVVGEFLGFYKGLLGTAQHTQHIDGDVINNGPLLAAENWDSLLRAVSKEEISYALNDV 1753
                                             P LA     SL    + ++I      +
Sbjct: 263  ---------------------------------PDLAK----SLCNEFTHDDIRAVFFSM 285

Query: 1754 EYDKSPGPDGFSSKFFKKAWNIVGVDFTEA-INEFFVSGRLLKEWNHVTVALIPKTAHSP 1930
              +KSPGPDGF+  FF+KAW ++G +   A + EFF  G LL E N   + L+PK A+  
Sbjct: 286  NPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPT 345

Query: 1931 KVGDFRPISCCNVFYKVLSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRS 2110
             + DFRPISCCN FYK+++K+LA RL   L  I+  +Q+ F+ GR + DNI L QE++  
Sbjct: 346  TMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNILLAQEIICD 405

Query: 2111 YNRKRTTPRCTLKIDLRKAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINX 2290
            Y++    PRCT  +D+ KA D+V W F+   L     P   + W+  C+++A +S+ +N 
Sbjct: 406  YHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNG 465

Query: 2291 XXXXXXXXXXXXRQGDPLSPYLFVICLEYLSRLIRKK-TTNTHFNFHPKCGPLNITHLAF 2467
                        RQGDPLSPYLFVI +E LS  I+++   +  F +H +C  LN++HL F
Sbjct: 466  ELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQLNLSHLCF 525

Query: 2468 ADDLMMLSRGDPISVKILLDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLT 2647
            ADDL+M   GD  SV+ L D   +F S S LK N+ +S IF+AG+    S ++L  +  +
Sbjct: 526  ADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFS 585

Query: 2648 QGSMPFRYLGIPLAAERLKVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVEC 2827
             G+ P RYLGIPL   +L++     L+ +I   I  W    LS+AGR +LI+SV+  ++ 
Sbjct: 586  LGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQV 645

Query: 2828 FWLSIFPIPNSVRDKIIQICRNFLW--GTGGKA--HIAWTTICLPKDEGGLGIRDLQAWN 2995
            +W S   +P  V   I +  R FLW     G+A   +AW+ ICLPK EGGLGI+DL  WN
Sbjct: 646  YWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLGIKDLHCWN 705

Query: 2996 HSLLAKTLWNIHARKDSLWYRWIHHYYLHNRPFRDWTVARSDSNLIKNIYSIR---TQIL 3166
             +L+   +WN+ +   + W  W+  Y L    F +  +    S   + +  IR       
Sbjct: 706  KALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFF 765

Query: 3167 HKYGGNWQKTEQQLVNWHSNHQVKGPKNV---YNFFRDAGTKKPWAGIVWASGITPKHSF 3337
                G+ + T     NWH      GP  +    N   ++G  K  + ++  +G     S 
Sbjct: 766  VNIIGDGRATSLWFDNWHP----LGPLTLRWSSNIIGESGLSK--SAMLTPNGFYSTSSA 819

Query: 3338 TLWLAAHKRIQTKDRLGHLKLEDGTCNFCAAQPETAAHLFFNCPFSAAIWDGIKEWTGIS 3517
               L   + I    RL           F A   ET  HLFF+C +S  IW  +     +S
Sbjct: 820  WNTLRPSRFIVPWYRL---------VWFVA---ETHNHLFFDCAYSFGIWTHVLSKCDVS 867

Query: 3518 RQMTTLSSALKWLKKEARGTSKKSKGQKIAMATTVYQIWNARNRLIFEGEVL 3673
            + +   S  + W+    +G S      K+A+   VY IW  RN   F  E L
Sbjct: 868  KPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNNRRFRNESL 919


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  433 bits (1114), Expect = e-118
 Identities = 243/694 (35%), Positives = 373/694 (53%), Gaps = 12/694 (1%)
 Frame = +2

Query: 1049 FLPSGLSDHSPCVVNITNASAAG-KTPWRFFNMWTEHDEFMATVRDKW----DITIWGTA 1213
            + P G+ D       +  A+A G + P++F N+ T+  +F+  V   W     + +  +A
Sbjct: 521  YTPPGMRDFQEIGRLMLEAAATGGRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSA 580

Query: 1214 QFRLRTKLRELKSCLKTLNDKHFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPAL 1393
             +R   KL+ LK  L+ L  +                         +P+ + IA +L A 
Sbjct: 581  LYRFSKKLKTLKPHLRELGKEKLGDLPKRTREAHILLCEKQATTLANPSQETIAEELKAY 640

Query: 1394 RERSSFLSNAEKQFFRQKAKSKFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNS 1573
             + +  LS  E+ F +QK+K  ++   D  + +FH   +    RN I  +   +     +
Sbjct: 641  TDWTH-LSELEEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQT 699

Query: 1574 TEQVVGEFLGFYKGLLGTAQHTQH-IDGDVINN--GPLLAAENWDSLLRAVSKEEISYAL 1744
            +E++ GE   F+   L       H I  + + N      +  + + L R V+ EEI   L
Sbjct: 700  SEEIKGEAERFFNEFLNRQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVL 759

Query: 1745 NDVEYDKSPGPDGFSSKFFKKAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAH 1924
              +  +KSPGPDG++S+FFK  W++ G DF  AI  FFV G L K  N   +ALIPK   
Sbjct: 760  FAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDE 819

Query: 1925 SPKVGDFRPISCCNVFYKVLSKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELL 2104
            + ++ D+RPISCCNV YKV+SKILA RL  +L   I   Q+AFVK R +++N+ L  EL+
Sbjct: 820  AIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELV 879

Query: 2105 RSYNRKRTTPRCTLKIDLRKAFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSI 2284
            + Y+++  TPRC +KID+ KAFDSV W FL   L+ L FP  F  W+  C++TA++S+ +
Sbjct: 880  KDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQV 939

Query: 2285 NXXXXXXXXXXXXXRQGDPLSPYLFVICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLA 2464
            N             RQG  LSPYLFVIC+  LS +I +   + +  +HPKC  + +THL 
Sbjct: 940  NGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLC 999

Query: 2465 FADDLMMLSRGDPISVKILLDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQL 2644
            FADDLM+   G   S++ +++   +F  +SGL++++ KS I++AG+   D +  LS    
Sbjct: 1000 FADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPF 1059

Query: 2645 TQGSMPFRYLGIPLAAERLKVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVE 2824
              G +P RYLG+PL  +++  A Y  LI  ++  IS W+A +LSYAGR  L+ SV+  + 
Sbjct: 1060 ANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIA 1119

Query: 2825 CFWLSIFPIPNSVRDKIIQICRNFLWG----TGGKAHIAWTTICLPKDEGGLGIRDLQAW 2992
             FW+S + +P     +I ++C  FLW        KA IAW++IC PK EGGLGI+ L   
Sbjct: 1120 NFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEA 1179

Query: 2993 NHSLLAKTLWNIHARKDSLWYRWIHHYYLHNRPF 3094
            N     K +W + + + SLW  WI  + +    F
Sbjct: 1180 NKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTF 1213



 Score = 61.2 bits (147), Expect = 4e-06
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
 Frame = +2

Query: 3245 KNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRL-----GHLKLEDG 3409
            K  +N  R    ++ W   VW    TPK+SF LWL    R+ T DR+     G L     
Sbjct: 1339 KVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLV---- 1394

Query: 3410 TCNFCAAQPETAAHLFFNCPFSAAIWDGIKE---WTGISRQMTTLSSALKWLKKEARGTS 3580
            TC  C    ET  HLFF+C +++ +W+ + +    T  SR    L + L         TS
Sbjct: 1395 TCTLCNNAEETRDHLFFSCQYTSYVWEALTQRLLSTNYSRDWNRLFTLL--------CTS 1446

Query: 3581 KKSKGQ----KIAMATTVYQIWNARN 3646
               +      +     ++Y IW  RN
Sbjct: 1447 NLPRDHLFLFRYVFQASIYHIWRERN 1472


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  420 bits (1079), Expect = e-114
 Identities = 264/809 (32%), Positives = 398/809 (49%), Gaps = 89/809 (11%)
 Frame = +2

Query: 1487 KFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDGDVIN 1666
            K FH  V     +N I  +   DG +    + +V E   F+K  L        +  +V  
Sbjct: 22   KTFHRAVIERETKNMIKEIYCTDGRVVQGDDIMV-EAEKFFKEFLQLIPE-DFVGVEVRE 79

Query: 1667 NGPLLAAENWDS----LLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIVGVDF 1834
               LL     +S    L R VS EEI   L  +  DKSPGPDG++S+F+K  W+I+G +F
Sbjct: 80   LQDLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEF 139

Query: 1835 TEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILATRLSS 2014
            T  +  FF  G L K  N + +ALIPK   + ++ D+RPISCCNV YKV+SKI+A RL  
Sbjct: 140  TLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKL 199

Query: 2015 VLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVSWTFL 2194
            +L   I   Q+AFVK R +++N+ L  EL++ Y++   + RC +KID+ KAFDSV W+FL
Sbjct: 200  LLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFL 259

Query: 2195 REVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFVICLE 2374
               L  + F P F+ W+  C+TTAS+S+ +N             RQG  LSPYLFVIC++
Sbjct: 260  TNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMD 319

Query: 2375 YLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDFGSKS 2554
             LS+++ K      F FHPKC  L +THL+FADDLM+LS G   S++ +L+  D+F  +S
Sbjct: 320  VLSKMLDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRS 379

Query: 2555 GLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHYEELIAK 2734
            GL++++ KS ++MAG+       I +      G +P RYLG+PL  +RL  A Y  L+ +
Sbjct: 380  GLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQ 439

Query: 2735 IREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQICRNFLWG--- 2905
            I++ I+ W+    S+AGR  LI+SV+  +  FWL+ F +P     +I ++C +FLW    
Sbjct: 440  IKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSE 499

Query: 2906 -TGGKAHIAWTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHA---------------R 3037
             +  KA I+W  +C PK EGGLG+R+L+  N     K +W I +               R
Sbjct: 500  MSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIR 559

Query: 3038 KDSLWYR-------------------------------------WIHHYYLHNRPF---- 3094
            K S+W                                       W  H+  H R      
Sbjct: 560  KKSIWSLKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVG 619

Query: 3095 ----------RDWTVARSDSNLIKNIYSIRTQILHK------YGGNWQKTEQQLVNWHSN 3226
                      R+ +VA + +   +  +  RT +L++      Y        +  V W   
Sbjct: 620  DKGTIDLGIPREASVADAWTRRSRRRH--RTSLLNEIEEMMAYQRIHHSDAEDTVLWRGK 677

Query: 3227 HQVKGP----KNVYNFFRDAGTKKPWAGIVWASGITPKHSFTLWLAAHKRIQTKDRLGHL 3394
            + V  P    ++ ++  +   +   W   VW    TPK++   WLA H R+ T DR+  L
Sbjct: 678  NDVFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRM--L 735

Query: 3395 KLE-----DGTCNFCAAQPETAAHLFFNCPFSAAIWDGIKEWTGISRQMTTLSSALKWLK 3559
            K        G C  C    +T  HLFF+C +++ +W  + +    +R  T  S  L  + 
Sbjct: 736  KWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHIS 795

Query: 3560 KEARGTSKKSKGQKIAMATTVYQIWNARN 3646
               +   +    + I  A T+Y +W  RN
Sbjct: 796  THFQDRVEGFLTRYIFQA-TIYHVWRERN 823


>emb|CAN68838.1| hypothetical protein VITISV_030956 [Vitis vinifera]
          Length = 1881

 Score =  420 bits (1079), Expect = e-114
 Identities = 282/909 (31%), Positives = 435/909 (47%), Gaps = 20/909 (2%)
 Frame = +2

Query: 410  MIIATWNIRGFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDN----RLNGWS 577
            M I +WN RG  S  K+  V + +R +  DV    ETK  ++   +FV +    R   W+
Sbjct: 830  MKIISWNTRGLGSKKKRRVVKDFLRSEKPDVVMFQETK-KEECDRRFVGSVWTARNKDWA 888

Query: 578  SCNNFDLVKGGRIAIFWNMAKVNIEVI---GFHPQVIHTLATCKITQRIFFVSFVYGLHS 748
            +         G I I W+  K++ E +    F   +  TL  C+      ++S VYG ++
Sbjct: 889  ALPACGA--SGGILIIWDTKKLSREEVMLGSFSVSIKFTLNGCES----LWLSAVYGPNN 942

Query: 749  VGDRKPLWEELNRIKQIVGRAWLIMGDFNSILNSNERRNGVPIQPRDIKDFVNCSSVLGL 928
               RK LW EL+ I  +    W + GDFN I  S+E+  G  + P  +KDF +  S   L
Sbjct: 943  SALRKDLWVELSDIAGLASPRWCVGGDFNVIRRSSEKLGGSRLTP-SMKDFDDFISDCEL 1001

Query: 929  TDLPSTGHFFTWTN---NTVWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNIT 1099
             DLP     FTW+N   N V  +LDR +  N+W    P +    LP   SDH P V+  T
Sbjct: 1002 IDLPLRSASFTWSNMQVNPVCKRLDRFLYSNEWEQTFPQSIQGVLPRWTSDHWPIVLE-T 1060

Query: 1100 NASAAGKTPWRFFNMWTEHDEFMATVRDKW-DITIWGTAQFRLRTKLRELKSCLKTLNDK 1276
            N    G TP+RF NMW +H  F       W +    G    +   KL+ +K+ LK  N  
Sbjct: 1061 NPFKWGPTPFRFENMWLQHPSFKENFGRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKA 1120

Query: 1277 HFXXXXXXXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKS 1456
             F                          + E+  +    +     L   E+  +RQKA+ 
Sbjct: 1121 SFGELSKRKEDILSALVNFDSLEQEGGLSHELLAQRAIKKGELEELILREEIHWRQKARV 1180

Query: 1457 KFIIHSDKCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLL----G 1624
            K++   D  SKFFH +      R FI  L  ++G + N++E +  E L +++ L     G
Sbjct: 1181 KWVKEGDCNSKFFHKVANGRRNRKFIKELENENGQMMNNSESIKEEILRYFEKLYTSPSG 1240

Query: 1625 TAQHTQHIDGDVINNGPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFK 1804
             +   + +D   I+    +  E+        ++EEI  A+  ++ DK+PGPDGF+   F+
Sbjct: 1241 ESWRVEGLDWSPISGESAVRLES------PFTEEEICKAIFQMDRDKAPGPDGFTIAVFQ 1294

Query: 1805 KAWNIVGVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVL 1984
              W ++  D  +   EF  SG + +  N   + L+PK + S ++ DFRPIS     YK++
Sbjct: 1295 DCWEVIKEDLVKVFTEFHRSGIINQSTNASFIVLLPKKSMSRRISDFRPISLITSLYKII 1354

Query: 1985 SKILATRLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRK 2164
            +K+LA R+  VL   I   Q AFV+GR ++D + +  E++    R+        KID  K
Sbjct: 1355 AKVLAGRIREVLHETIHSTQGAFVQGRQILDAVLIANEIV-DEKRRSGEEGVVFKIDFEK 1413

Query: 2165 AFDSVSWTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPL 2344
            A+D VSW FL  V++  GF  R+ +W+  C+++ S+++ +N             RQGDPL
Sbjct: 1414 AYDHVSWDFLDHVMEMKGFGIRWRKWMRGCLSSVSFAVLVNGNAKGWVKASRGLRQGDPL 1473

Query: 2345 SPYLFVICLEYLSR-LIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKIL 2521
            SP+LF I  + LSR L++ +  N    F        ++HL FADD +  S      +  L
Sbjct: 1474 SPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFADDTIFFSSSREEDMMTL 1533

Query: 2522 LDCLDDFGSKSGLKMNILKSNIFMAGIKERDSLNILSFSQLTQGSMPFRYLGIPLAAERL 2701
             + L  FG  SGLK+N+ KSNI+   +++     +           P  YLG+PL     
Sbjct: 1534 KNVLLVFGHISGLKVNLDKSNIYGINLEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPK 1593

Query: 2702 KVAHYEELIAKIREYISGWSASTLSYAGRTELIRSVVQGVECFWLSIFPIPNSVRDKIIQ 2881
                ++ +I +I   + GW  + LS+ GR  LI+S +  + C++LS+F IP SV  KI +
Sbjct: 1594 TSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIER 1653

Query: 2882 ICRNFLW---GTGGKAHIA-WTTICLPKDEGGLGIRDLQAWNHSLLAKTLWNIHARKDSL 3049
            + R+FLW   G G + H+  W  +C PK  GGLG   +   N +LL K LW       +L
Sbjct: 1654 MQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRNVALLGKWLWRYPREGSAL 1713

Query: 3050 WYRWIHHYY 3076
            W++ I   Y
Sbjct: 1714 WHQVILSIY 1722


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
            putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  409 bits (1051), Expect = e-111
 Identities = 251/786 (31%), Positives = 403/786 (51%), Gaps = 20/786 (2%)
 Frame = +2

Query: 437  GFNSPLKQDEVFNLIREKNIDVFGLLETKASQQTINKFVDNRLNGWSSCNNFDLVKGGRI 616
            GFN P  ++      +       G++E    Q    KF++  L GW    N+     G+I
Sbjct: 4    GFNIPSHRNGFKKWFKVNRPIFGGVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKI 63

Query: 617  AIFWNMAKVNIEVIGFHPQVIHTLATCKI----TQRIFFVSFVYGLHSVGDRKPLWEELN 784
             + W+ + V + ++    Q+I    TC++    ++    +S VY  +    RK LW E+ 
Sbjct: 64   WVLWDPS-VEVVIVAKSLQMI----TCEVLFPNSRTWIVISVVYAANEDDKRKELWREIT 118

Query: 785  RIKQ---IVGRAWLIMGDFNSILNSNERRNGVPIQ-PRDIKDFVNCSSVLGLTDLPSTGH 952
             +        R W+++GDFN +L+ +E    V +   R I+DF  C     L+DL   G 
Sbjct: 119  ALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGS 178

Query: 953  FFTWTNNT----VWSKLDRAMVDNDWIMENPHAAAHFLPSGLSDHSPCVVNITNASAAGK 1120
             FTW N +    V  K+DR +V+  W    P +   F P   SDH+ C V +       K
Sbjct: 179  SFTWWNKSKTRPVAKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASCGVVLELDPIKAK 238

Query: 1121 TPWRFFNMWTEHDEFMATVRDKWDIT-IWGTAQFRLRTKLRELKSCLKTLNDKHFXXXXX 1297
             P++FFN   ++ EF+  V D W  T + G++ FR+  KL+ LK  +K  +  ++     
Sbjct: 239  RPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEK 298

Query: 1298 XXXXXXXXXXXXXXGLHNDPNNQEIANKLPALRERSSFLSNAEKQFFRQKAKSKFIIHSD 1477
                             ++P+ +  A++L A R +   L+ AE+ FFRQ+++  +    D
Sbjct: 299  RTEEAHETLLSFQNLTLDNPSLENAAHELEAQR-KWQILATAEESFFRQRSRVTWFAEGD 357

Query: 1478 KCSKFFHAIVKRNAKRNFISSLTRDDGTLTNSTEQVVGEFLGFYKGLLGTAQHTQHIDGD 1657
              +++FH +       N I++L  D GT  +S + +      +++ LL        ++ D
Sbjct: 358  GNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDNDPYSLEQD 417

Query: 1658 VIN-----NGPLLAAENWDSLLRAVSKEEISYALNDVEYDKSPGPDGFSSKFFKKAWNIV 1822
             +N       P     + +++    S E+I  A   +  +K+ GPDGF            
Sbjct: 418  DMNLLLTYRCPYSQVADLEAMF---SDEDIKAAFFGLPSNKACGPDGFP----------- 463

Query: 1823 GVDFTEAINEFFVSGRLLKEWNHVTVALIPKTAHSPKVGDFRPISCCNVFYKVLSKILAT 2002
                T A+ EFF+SG LLK+WN  T+ LIPK  ++    DFRPISC N  YKV++++L  
Sbjct: 464  ---VTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTD 520

Query: 2003 RLSSVLDGIIDGAQAAFVKGRSMVDNIHLMQELLRSYNRKRTTPRCTLKIDLRKAFDSVS 2182
            RL  +L  +I  +Q+AF+ GR + +N+ L  E++  YN +  + R  LK+DLRKAFDSV 
Sbjct: 521  RLQKLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVR 580

Query: 2183 WTFLREVLDGLGFPPRFVRWVMECVTTASYSLSINXXXXXXXXXXXXXRQGDPLSPYLFV 2362
            W F+   L  LG P +F+ W+ +C++T ++++S+N             RQGDPLSPYLFV
Sbjct: 581  WEFIIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFV 640

Query: 2363 ICLEYLSRLIRKKTTNTHFNFHPKCGPLNITHLAFADDLMMLSRGDPISVKILLDCLDDF 2542
            + +E  S+L+  +  + +  +HPK   L+I+HL FADD+M+   G   S+  + + L+DF
Sbjct: 641  LAMEVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDF 700

Query: 2543 GSKSGLKMNILKSNIFMAGIK--ERDSLNILSFSQLTQGSMPFRYLGIPLAAERLKVAHY 2716
             S SGLK+N  KS+ F AG++  ER+SL    F    QG +P RYLG+PL   +L++A Y
Sbjct: 701  ASWSGLKVNNDKSHFFCAGLEQAERNSLAAYGF---PQGCLPIRYLGLPLMCRKLRIAEY 757

Query: 2717 EELIAK 2734
            E L+ K
Sbjct: 758  EPLLEK 763