BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00003955
         (1009 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   214   3e-53
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]             200   6e-49
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]              200   6e-49
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   199   2e-48
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...   195   3e-47
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   188   3e-45
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621...   187   7e-45
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   183   1e-43
ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627...   182   1e-43
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   182   1e-43
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   182   2e-43
ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [S...   179   2e-42
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   178   3e-42
gb|EMJ25392.1| hypothetical protein PRUPE_ppa017155mg, partial [...   177   6e-42
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...   176   2e-41
gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus pe...   174   4e-41
gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus pe...   174   5e-41
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   174   5e-41
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   174   6e-41
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   173   1e-40

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  214 bits (546), Expect = 3e-53
 Identities = 115/327 (35%), Positives = 183/327 (55%), Gaps = 2/327 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W L GDFN++    EK GG  R   S + F   +   G+ E+   G +F+W  NR+ E  
Sbjct: 131  WMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDE-L 189

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            V+ +LDR   +  W   FP+       ++ SDH  + +N     N ++   F++D+RWV 
Sbjct: 190  VQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPL-INNLVGDNWRKWAGFKYDKRWVQ 248

Query: 616  QEGAEDLIKKAWSI-NVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLES 440
            +EG +DL+   WS  + + NA+     K+ +CR E+ KW    + +SA ++  L   L++
Sbjct: 249  REGFKDLLCNFWSQQSTKTNALMM--EKIASCRREISKWKRVSKPSSAVRIQELQFKLDA 306

Query: 439  L-RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRM 263
              + +  DR   +  RLK EL Q YN EE FWQ+KSR+ W++ GD+NTKYFHA T  RR 
Sbjct: 307  ATKQIPFDRR--ELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRA 364

Query: 262  TNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRL 83
             N I +LI E G    ++ ++ +   +++  LF SE       +L  +   +S ++N+ L
Sbjct: 365  QNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNL 424

Query: 82   ILPISEAEIKQALFDLHPHKAPGPDGM 2
            + PI++ E+++A F ++PHK PGPDGM
Sbjct: 425  LAPITKEEVQRATFSINPHKCPGPDGM 451


>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  200 bits (509), Expect = 6e-49
 Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 3/328 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFNDI  N EK GG  RS      FN  I+   + E+P  G  FTWA  R G+ +
Sbjct: 94   WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRR-GDHW 152

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            ++ +LDR FG+ EW   FP +         SDH  + +      +  R + F+FD+R++ 
Sbjct: 153  IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ-FRFDKRFLF 211

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
            +E  ++ I + WS    G  +  V  +++ CR  L  W     LNS  ++  L ++LE  
Sbjct: 212  KEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKE 270

Query: 436  RAMDGDRDWDQWNR---LKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRR 266
            +++     W  + R   LK +L +AY EEE +W+QKSR  WL++G++N+KYFHA   Q R
Sbjct: 271  QSLV----WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNR 326

Query: 265  MTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHR 86
                I +L   NG +  +E    +   +++ NLF S +  G +    G+   +S  +N  
Sbjct: 327  QRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNES 386

Query: 85   LILPISEAEIKQALFDLHPHKAPGPDGM 2
            L+  +S  EIK+A+F + P  APGPDGM
Sbjct: 387  LVGEVSAQEIKEAVFSIKPASAPGPDGM 414


>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  200 bits (509), Expect = 6e-49
 Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 3/328 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFNDI  N EK GG  RS      FN  I+   + E+P  G  FTWA  R G+ +
Sbjct: 97   WCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRR-GDHW 155

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            ++ +LDR FG+ EW   FP +         SDH  + +      +  R + F+FD+R++ 
Sbjct: 156  IQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLIKLMSSQDSYRGQ-FRFDKRFLF 214

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
            +E  ++ I + WS    G  +  V  +++ CR  L  W     LNS  ++  L ++LE  
Sbjct: 215  KEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNSLDKINQLEAALEKE 273

Query: 436  RAMDGDRDWDQWNR---LKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRR 266
            +++     W  + R   LK +L +AY EEE +W+QKSR  WL++G++N+KYFHA   Q R
Sbjct: 274  QSLV----WPIFQRVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNR 329

Query: 265  MTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHR 86
                I +L   NG +  +E    +   +++ NLF S +  G +    G+   +S  +N  
Sbjct: 330  QRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNES 389

Query: 85   LILPISEAEIKQALFDLHPHKAPGPDGM 2
            L+  +S  EIK+A+F + P  APGPDGM
Sbjct: 390  LVGEVSAQEIKEAVFSIKPASAPGPDGM 417


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  199 bits (505), Expect = 2e-48
 Identities = 112/324 (34%), Positives = 166/324 (51%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W L GDFNDI  N EK+GG +R    F+ F +F+   G+ +I   G   +W   R    +
Sbjct: 75   WLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSH-F 133

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            ++ +LDR  G+  W   FP +  +      SDH  + +  F     KR K F+FDRR  +
Sbjct: 134  IKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPL-VTYFGAPPLKRSKPFRFDRRLRE 192

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
            +E    L+K+ W +  + + +Y    K+  CR  ++KW   +  NSA  +     +LES 
Sbjct: 193  KEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKAIKKAQQALESA 248

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
             + D   D      +  EL  AY +EE+FW+Q SRV WL +GD+N  YFHA T  RRM N
Sbjct: 249  LSADIP-DPSLIGSITQELEAAYRQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLN 307

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             +S +   +G     E +I   ++S++ N+FT+ +   +      +   IS   N  LI 
Sbjct: 308  NLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIK 367

Query: 76   PISEAEIKQALFDLHPHKAPGPDG 5
              S  EIK+ALF +   KAPGPDG
Sbjct: 368  ISSLLEIKEALFSISADKAPGPDG 391


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score =  195 bits (495), Expect = 3e-47
 Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 4/328 (1%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W L GDFNDI SN EK GG  RS  SF  F + + +  M E+   G  FTW  NR+ + +
Sbjct: 130  WCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQ-W 188

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            V+ KLDR FG+  W   FP        +  SDH  + + +F   N+    +F++D+R  D
Sbjct: 189  VQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLV-KFTNDNELFRGQFRYDKRLDD 247

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHK----VKNCRIELLKWNSAKQLNSASQVVHLNSS 449
                 ++I ++W+     +AM Q  H     +  CR  +  W  +   N+ S++  L   
Sbjct: 248  DPYCIEVIHRSWN-----SAMSQGTHSSFFSLIECRRAISVWKHSSDTNAQSRIKRLRKD 302

Query: 448  LESLRAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQR 269
            L++ +++     W +   +K +L  AY +EE+FW+QKSR  WL  GDKNT +FHA  +  
Sbjct: 303  LDAEKSIQIPC-WPRIEYIKDQLSLAYGDEELFWRQKSRQKWLAGGDKNTGFFHATVHSE 361

Query: 268  RMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNH 89
            R+ N +S L+ EN        +  K  +SF+ NLFTS      ++ L G+   ++ E+NH
Sbjct: 362  RLKNELSFLLDENDQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNH 421

Query: 88   RLILPISEAEIKQALFDLHPHKAPGPDG 5
             LI  ++E E+  A+F ++   APGPDG
Sbjct: 422  NLIQEVTELEVYNAVFSINKESAPGPDG 449


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  188 bits (477), Expect = 3e-45
 Identities = 99/324 (30%), Positives = 171/324 (52%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFN++    EK GG     W    F +F+ +  ++++   G  F+W   R G  +
Sbjct: 737  WLVLGDFNEVLDPSEKWGGGPPLPWRIKLFRDFLNNGHLRDLHFKGPGFSWFAMRHGRVF 796

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            ++E+LDR  G++ W    P T +    ++ SDH  + L+   ++  K  + F+F++ W  
Sbjct: 797  IKERLDRALGNIAWSSSQPNTQILHLPKIGSDHRPLLLDSNPKMLNKT-RLFRFEQMWTT 855

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
             E   D+I+++W     G+AM   +  + +C   L  W+  K  N + QV  L S +E L
Sbjct: 856  HEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVADLLSDIEKL 915

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
               +      Q N L  ++ + + ++E++W Q+SRVNWLK GD+N+ +FH  T QRR  N
Sbjct: 916  HQSNPPDAHHQINILTDQVTKLWTQDEMYWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYN 975

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             I +L  ++G    +E ++  +   +++ L+ S         L  +  +++ E+N  L  
Sbjct: 976  KIVRLKDDHGNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAVTAEMNKILSS 1035

Query: 76   PISEAEIKQALFDLHPHKAPGPDG 5
            P+S  E+K+A+FDL   KAPGPDG
Sbjct: 1036 PVSLLEVKKAVFDLGATKAPGPDG 1059


>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
          Length = 2303

 Score =  187 bits (474), Expect = 7e-45
 Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 17/342 (4%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W   GDFN+I +  EK GG  ++    V+F   ++   + ++   G  FTW+N R G+ +
Sbjct: 94   WCCFGDFNEILNLQEKSGGNEKNIDMVVQFREAVQACNLVDVGYRGHPFTWSNRRYGQHF 153

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRH-----KRFQFD 632
            +EE+LDR   S +W   F            SDHC I +   E    + H      R  ++
Sbjct: 154  IEERLDRFLCSNDWSENFHDMAATNLVNWVSDHCPILMEVRERSKDRSHGKKSIHREHYE 213

Query: 631  RRWVDQEGAEDLIKKAWSINVEGNAMYQVHH---KVKNCRIELLKWNSA-------KQLN 482
              W   E  +++++  W+    G     V H     KN    L  W+ +       KQ  
Sbjct: 214  DMWSSYEACKNIVRNEWASMGRGARENPVKHFQQAAKNSLANLKIWSKSEFADRKKKQDQ 273

Query: 481  SASQVVHLNSSLESLRAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKN 302
              +Q++H      S + M+GD    Q  R++ +++    +EEI+W+Q+SR  WLK GD+N
Sbjct: 274  LINQLIHAKHG--SAQRMNGD----QIRRIENQINGMLMDEEIYWRQRSRAEWLKEGDRN 327

Query: 301  TKYFHAVTNQRRMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSES--QPGISSQL 128
            TKYFH+  + RR  N I  + + +G     + E+EKE   ++ NLFT+ S  Q  I   L
Sbjct: 328  TKYFHSKASARRRKNKIWGIENSHGQWTEDQREVEKEFCEYFQNLFTTSSPNQSQIQDAL 387

Query: 127  HGIPQSISPELNHRLILPISEAEIKQALFDLHPHKAPGPDGM 2
             GI   ++  +NH+L  P +E EI +AL  + P KAPGPDG+
Sbjct: 388  DGISPKVTTNMNHQLEEPFTEEEIVEALHQMSPTKAPGPDGL 429


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  183 bits (464), Expect = 1e-43
 Identities = 106/338 (31%), Positives = 172/338 (50%), Gaps = 2/338 (0%)
 Frame = -1

Query: 1009 LLHARVKWGANWFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEF 830
            L H      A W L GDFN+I SN EK GG +R  W+F  F N +    ++++   G+ F
Sbjct: 501  LEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRF 560

Query: 829  TWANNRSGEGYVEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRH 650
            +W   R     V+  LDRVF +  W   FP   ++      SDH  + ++ F E   +R 
Sbjct: 561  SWVGERHTHT-VKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVH-FNESFPRRS 618

Query: 649  KRFQFDRRWVDQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQ 470
            K F+FD R +D    + +++ +W  N    +   +  ++ +CR  + +   A  LNS  +
Sbjct: 619  KLFRFDNRLIDIPTFKRIVQTSWRTNRNSRST-PITERISSCRQAMARLKHASNLNSEQR 677

Query: 469  VVHLNSSLESLRAMDGDRDWDQW--NRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTK 296
            +  L SSL   RAM+  R  D+    +L+  L +A+++EEI+W+QKSR  W+K GD+NT 
Sbjct: 678  IKKLQSSLN--RAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 735

Query: 295  YFHAVTNQRRMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIP 116
            YFHA T  R   N ++ ++ + G +   + EI      F++N+F++              
Sbjct: 736  YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 795

Query: 115  QSISPELNHRLILPISEAEIKQALFDLHPHKAPGPDGM 2
             +++  +N  L    S+ EI  A+  +   KAPGPDG+
Sbjct: 796  STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 833


>ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
          Length = 473

 Score =  182 bits (463), Expect = 1e-43
 Identities = 89/324 (27%), Positives = 168/324 (51%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFND+ ++ EKRG  V   W    F + + D+G+ ++ + G +FTW  ++  + +
Sbjct: 133  WVVLGDFNDLLNSTEKRGKLVHPNWKLQGFKDVVSDLGLHDLGMEGYQFTWEMSKGNKNW 192

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            +EE+LD    S+ W   FP+  V +     SDH  IF +    V + R K+F+F+  W+ 
Sbjct: 193  LEERLDHGLASINWIRLFPQAKVSSLKASCSDHLHIFFDPNPLVYQSRVKKFRFENLWLC 252

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
            +   + +++ +W+ +  GN    +  K+  C  +LL+W S    +   ++      +  L
Sbjct: 253  EPDCQPIVQDSWASS--GNV--SIQSKINACGSDLLRWGSYLSRDFHKRIRDCKQRIGVL 308

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
            R +        +   +   ++  +  EIFW+Q+S+  WLK GD N +YFHA+ + R+  N
Sbjct: 309  RGLRDVVSLGDFTEARNRYNELLHSHEIFWKQRSKSLWLKEGDLNPRYFHAMASTRKRQN 368

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             I +L +  G  C    EI + +  +++ +F+SE        +  + + +    NH L+ 
Sbjct: 369  MIGKLRNSKGQWCTDPAEINELIGDYFTKIFSSEG-GSCDEVIQCVEKKLMAGQNHSLME 427

Query: 76   PISEAEIKQALFDLHPHKAPGPDG 5
            P + A+++ A+F ++P K+P P+G
Sbjct: 428  PFTTADVRDAIFSMYPDKSPVPNG 451


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score =  182 bits (463), Expect = 1e-43
 Identities = 104/324 (32%), Positives = 165/324 (50%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFN I  N EKRGG  R   SF+ F + +    M E+P +G  FTW   ++ E +
Sbjct: 133  WCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTWGG-KTNEMW 191

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            ++ +LDR FG+  W   FP +  +   +  SDH  + +    +  ++    F+FD+R  +
Sbjct: 192  IQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVR-LTKTKEEYRGNFRFDKRLFN 250

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
            Q   ++ I +AW+   + N    V  K+K+CR  L +W     +NS++++    ++LE L
Sbjct: 251  QPNVKETIVQAWN-GSQRNENLLVLDKLKHCRSALSRWKKENNINSSTRITQARAALE-L 308

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
                G    D    LK +L +A ++EE+FW QKSR  W+ +GDKNT +FHA     R   
Sbjct: 309  EQSSGFPRADLVFSLKNDLCKANHDEEVFWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQ 368

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             I QL   NG     EM       +++S+LF S                ++  +N+ LI 
Sbjct: 369  HIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRVTESMNNTLIA 428

Query: 76   PISEAEIKQALFDLHPHKAPGPDG 5
             +S+ EI++A+F +    APG DG
Sbjct: 429  AVSKNEIREAVFAIRSSSAPGVDG 452


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  182 bits (461), Expect = 2e-43
 Identities = 106/338 (31%), Positives = 171/338 (50%), Gaps = 2/338 (0%)
 Frame = -1

Query: 1009 LLHARVKWGANWFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEF 830
            L H      A W L GDFN+I SN EK GG +R  W+F  F N +    ++++   G+ F
Sbjct: 275  LEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRF 334

Query: 829  TWANNRSGEGYVEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRH 650
            +W   R     V+  LDRVF +  W   FP    +      SDH  + ++ F E   +R 
Sbjct: 335  SWVGERHTHT-VKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVH-FNESFPRRS 392

Query: 649  KRFQFDRRWVDQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQ 470
            K F+FD R +D    + +++ +W  N    +   +  ++ +CR  + +   A  LNS  +
Sbjct: 393  KLFRFDNRLIDIPTFKRIVQTSWRTNRNSRST-PITERISSCRQAMARLKHASNLNSEQR 451

Query: 469  VVHLNSSLESLRAMDGDRDWDQW--NRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTK 296
            +  L SSL   RAM+  R  D+    +L+  L +A+++EEI+W+QKSR  W+K GD+NT 
Sbjct: 452  IKKLQSSLN--RAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTG 509

Query: 295  YFHAVTNQRRMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIP 116
            YFHA T  R   N ++ ++ + G +   + EI      F++N+F++              
Sbjct: 510  YFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFK 569

Query: 115  QSISPELNHRLILPISEAEIKQALFDLHPHKAPGPDGM 2
             +++  +N  L    S+ EI  A+  +   KAPGPDG+
Sbjct: 570  STVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGL 607


>ref|XP_002450843.1| hypothetical protein SORBIDRAFT_05g019526 [Sorghum bicolor]
            gi|241936686|gb|EES09831.1| hypothetical protein
            SORBIDRAFT_05g019526 [Sorghum bicolor]
          Length = 1209

 Score =  179 bits (453), Expect = 2e-42
 Identities = 98/327 (29%), Positives = 167/327 (51%), Gaps = 3/327 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W   GDFN++    E  G + RS      F   +   G+ ++   G  +T+    +G  +
Sbjct: 396  WVCIGDFNEVLHRSEHLGVQERSYAQIAGFREMVDVCGLCDLGYEGRSWTYEKKVTGGSF 455

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLN-EFEEVNKKRHKRFQFDRRWV 620
               +LDR   + EW  +FP   V+     +SDH  I L  E  +  +++ ++F+++  W 
Sbjct: 456  CRVRLDRALATPEWSARFPLAKVRHITAAASDHGPIVLQWEAAQGRQRQRRQFRYETMWE 515

Query: 619  DQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLES 440
              E   ++I + W    +    +++  K+++   +L  W        + ++  L   LE 
Sbjct: 516  THEDFANVISQTWQRGTKATTAHELQSKLRSVSCKLNHWEVRTFGQVSRELKGLRRELEM 575

Query: 439  LRAMDGDRDWDQWNRLKAE--LHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRR 266
            ++A D +R       LK +  + +  + EE+ W+Q++R+ WL AGDKNT +FH   ++RR
Sbjct: 576  MQA-DVNRQGPSHVELKIKERIMELNHREELMWKQRARIQWLSAGDKNTHFFHLRASRRR 634

Query: 265  MTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHR 86
              N I +L + NG V     E+ +  TSFY  L+T+E    + + L  +P  ++ E+N +
Sbjct: 635  KRNMIVKLKTANGQVTEDRKEMGQMATSFYKLLYTAEGTENMEAVLETVPAKVTTEMNDK 694

Query: 85   LILPISEAEIKQALFDLHPHKAPGPDG 5
            LI P SE EIK+ALF + P KAPGPDG
Sbjct: 695  LIAPFSELEIKEALFQMFPTKAPGPDG 721


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  178 bits (451), Expect = 3e-42
 Identities = 104/332 (31%), Positives = 169/332 (50%), Gaps = 7/332 (2%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANN-RSGEG 800
            W +AGDFN+I  + EK+GGR+++  +   F + + D G+ ++   G+ FTW N+  S EG
Sbjct: 378  WLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQEG 437

Query: 799  YVEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNK-----KRHKRFQF 635
            Y+ E+LDR   + EW   FP   V       SDH  + + E E  NK       H  F+F
Sbjct: 438  YIRERLDRAVANPEWRAMFPAARVINGDPRHSDHRPVII-ELEGKNKGVRGRNGHNDFRF 496

Query: 634  DRRWVDQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLN 455
            +  W+++E  ++++K+AW ++  G     VH  +      L  W+S    +   +V  + 
Sbjct: 497  EAAWLEEEKFKEVVKEAWDVSA-GLQGLPVHASLAGVAAGLSSWSSNVLGDLEKRVKKVK 555

Query: 454  SSLESLRAMDGDRDWDQWNR-LKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVT 278
              LE+ R     RD       L+  L +   + +I+W+Q++  NWL  GD+NT +FHA  
Sbjct: 556  KELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQRAHTNWLNKGDRNTSFFHASC 615

Query: 277  NQRRMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPE 98
            ++RR  N I++L  E+G+    E +    +  F+  LFTS         L  + + +S  
Sbjct: 616  SERRRRNRINKLRREDGSWVEREEDKRAMIIEFFKQLFTSNGGQNSQKLLDVVDRKVSGA 675

Query: 97   LNHRLILPISEAEIKQALFDLHPHKAPGPDGM 2
            +N  L    +  E+K+AL  +   KAPGPDGM
Sbjct: 676  MNESLRAEFTREEVKEALDAIGDLKAPGPDGM 707


>gb|EMJ25392.1| hypothetical protein PRUPE_ppa017155mg, partial [Prunus persica]
          Length = 916

 Score =  177 bits (449), Expect = 6e-42
 Identities = 103/326 (31%), Positives = 160/326 (49%), Gaps = 3/326 (0%)
 Frame = -1

Query: 976 WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
           W   GDFN+I    EK GGR R     + F   I   G +++   G ++TW  N   E  
Sbjct: 9   WLCCGDFNEILRADEKLGGRRRREGQMLGFRQAIDTCGFKDMGYTGPKYTWWRNNPME-- 66

Query: 796 VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHC--LIFLNEFEEVNKKRHKRFQFDRRW 623
           +  +LDRV  + +WC +F  T V       SDH    + ++E   +N +R K F+F+  W
Sbjct: 67  IRIRLDRVLATADWCSRFLGTKVIHLNPTKSDHLPLKVTISERMLLNGRRKKLFRFEEMW 126

Query: 622 VDQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSL- 446
            +       I+  W     G+A +    K+K  R +LL W+     +  +Q+      L 
Sbjct: 127 AEHVNCMQTIQDGWQRTCRGSAPFTTTEKLKCTRHQLLGWSKCNFGHLPNQIKITREKLG 186

Query: 445 ESLRAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRR 266
           E L A       +  N L  +L     + E++W+Q+SR  WLKAGD+N+K+FH   +  R
Sbjct: 187 ELLDAPPSHHTVELRNALTKQLDSLMAKNEVYWRQRSRATWLKAGDRNSKFFHYKASSCR 246

Query: 265 MTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHR 86
             N IS L  E+G    TE  + + V +++ +LF+S      +  + G+   ++ E+N  
Sbjct: 247 RRNTISALEDEHGHWQTTEQGLTQTVVNYFQHLFSSIGSSDYTEVVDGVRGRVTEEMNQA 306

Query: 85  LILPISEAEIKQALFDLHPHKAPGPD 8
           L+   +  EIK ALF +HP KAPGPD
Sbjct: 307 LLAEFTPEEIKIALFQMHPSKAPGPD 332


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
            gi|241936261|gb|EES09406.1| hypothetical protein
            SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score =  176 bits (445), Expect = 2e-41
 Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 6/330 (1%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W   GDFN+I    E+ G   R  +      + +    +++I  +G ++T+    +G  +
Sbjct: 132  WVCMGDFNEILRREEQLGPNEREEYLMEGVRDAVDMCQLRDIGYIGLDWTFEKKVAGGHF 191

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKK----RHKRFQFDR 629
            V  +LDR   SV WC +FP   VQ    + SDHC I L+   +   +    + K F+++ 
Sbjct: 192  VRVRLDRALASVNWCARFPLAAVQHLTAVKSDHCPILLSHVPDERNEGGGCQGKPFRYEL 251

Query: 628  RWVDQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSS 449
             W   E    LI++ W      N++  +  K+ +   EL  W          ++      
Sbjct: 252  MWETNERLSSLIEQIWKNGQHCNSVKDMKDKLFHLGEELKSWGGKTFGVVRKELRVQKKR 311

Query: 448  LESLRAMDGDRDW--DQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTN 275
            LE LRA D  R+   ++  ++   +     +EEI W+Q+SR+ WL  GD NTK+FH   +
Sbjct: 312  LEQLRA-DPSRNTVSEEEQKIVNRIILLNYQEEIMWRQRSRITWLHEGDSNTKFFHQRAS 370

Query: 274  QRRMTNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPEL 95
            +RR+ N I +L   +G+ C    E+ + V  FY NLF SE    ++  L  IP+ ++ ++
Sbjct: 371  RRRIRNRIDKLNRPDGSECTNVDELHQMVVDFYRNLFESEGTSNMNLVLDHIPRKVTDDM 430

Query: 94   NHRLILPISEAEIKQALFDLHPHKAPGPDG 5
            N  L  P +E E+K ALF + P K+PGPDG
Sbjct: 431  NLFLCAPFNETEVKNALFQMFPTKSPGPDG 460


>gb|EMJ04651.1| hypothetical protein PRUPE_ppa022115mg [Prunus persica]
          Length = 1755

 Score =  174 bits (442), Expect = 4e-41
 Identities = 104/327 (31%), Positives = 155/327 (47%), Gaps = 2/327 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W   GDFN+I S  EK GG +R+      F N +  +G +++   G +FTW   R G+G+
Sbjct: 544  WLCVGDFNEILSTDEKEGGPLRNNRQMQGFRNIVDKLGFRDLGFNGYKFTW-KCRFGDGF 602

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLN-EFEEVNKKRHKRFQFDRRWV 620
            V  +LDR   +  W   FP  +VQ      SDH  I +        K R++RF F+  W 
Sbjct: 603  VRVRLDRALATTSWQNLFPGFSVQHLDPSRSDHLPILVRIRHATCQKSRYRRFHFEAMWT 662

Query: 619  DQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLES 440
                 E  IK+ W      + M  +  K+K     L +W+ +   +   +   L + L S
Sbjct: 663  THVDCEKTIKQVWESVGNLDPMVGLDKKIKQMTWVLQRWSKSTFGHIKEETRVLRAKLAS 722

Query: 439  L-RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRM 263
            L +A   +R  +    ++  L +   + E++W Q+SR NWLKAGDKNT YFH     RR 
Sbjct: 723  LFQAPYSERVEEDRRVVQKSLDELLAKNELYWCQRSRENWLKAGDKNTSYFHQKATNRRR 782

Query: 262  TNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRL 83
             N I  L   NG    +   I   V  ++ +LF S     +   L  +   ++ ++   L
Sbjct: 783  RNIIKGLEDSNGCWRTSRQGITSIVIDYFGDLFRSSGSSMMEEILSALEPKVTADMQQVL 842

Query: 82   ILPISEAEIKQALFDLHPHKAPGPDGM 2
            I   S  EIK A+F + P KAPGPDG+
Sbjct: 843  IADFSYQEIKDAVFQMQPSKAPGPDGL 869


>gb|EMJ18520.1| hypothetical protein PRUPE_ppa019733mg [Prunus persica]
          Length = 1275

 Score =  174 bits (441), Expect = 5e-41
 Identities = 104/327 (31%), Positives = 155/327 (47%), Gaps = 2/327 (0%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W   GDFN+I S  EK GG +R+      F N +  +G +++   G +FTW   R G+G+
Sbjct: 90   WLCVGDFNEILSTDEKEGGPLRNNRQMQGFRNIVDKLGFRDLGFNGYKFTW-KCRFGDGF 148

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLN-EFEEVNKKRHKRFQFDRRWV 620
            V  +LDR   +  W   FP  +VQ      SDH  I +        K R+ RF F+  W 
Sbjct: 149  VRVRLDRALATTSWQNLFPGFSVQHLDPSRSDHLPILVRIRHATCQKSRYHRFHFEAMWT 208

Query: 619  DQEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLES 440
                 E  IK+ W    + + M  +  K+K     L +W+ +   +   +   L + L S
Sbjct: 209  THVDCEKTIKQVWESVGDLDPMVGLDKKIKQMTWVLQRWSKSTFGHIKEETRVLRAKLAS 268

Query: 439  L-RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRM 263
            L +A   +R  +    ++  L +   + E++W Q+SR NWLKAGDKNT YFH     RR 
Sbjct: 269  LFQAPYSERVEEDRRVVQKSLDELLAKNELYWCQRSRENWLKAGDKNTSYFHQKATNRRR 328

Query: 262  TNGISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRL 83
             N I  L   NG    +   I   V  ++ +LF S     +   L  +   ++ ++   L
Sbjct: 329  RNIIKGLEDSNGCWRTSRQGITSIVIDYFGDLFRSSGSSMMEEILSALEPKVTADMQQVL 388

Query: 82   ILPISEAEIKQALFDLHPHKAPGPDGM 2
            I   S  EIK A+F + P KAPGPDG+
Sbjct: 389  IADFSYQEIKDAVFQMQPSKAPGPDGL 415


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  174 bits (441), Expect = 5e-41
 Identities = 99/324 (30%), Positives = 166/324 (51%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W + GDFN+I +  EK+GGR RS  S   F N I    M+++   G  ++W   R  E  
Sbjct: 493  WMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQNET- 551

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            +E  LDRVF + +W   FP    +      SDH  + ++  EEV  KR + F++DRR   
Sbjct: 552  IESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTKRGQ-FRYDRRHFQ 610

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
             E   D +++ W+     ++    + K+  CR EL KW    + N+A ++  L   +++ 
Sbjct: 611  FEDFVDSVQRGWNRG-RSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDAA 669

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
               D         RL+ +L+QAY +EE++W  KSR  W+  GD+NT +F+A T  R+  N
Sbjct: 670  ER-DHTLPHQTILRLRQDLNQAYRDEELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRN 728

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             I  +    G     +  I K   +++++LFT+         + GI   ++ ++NH L+ 
Sbjct: 729  RIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQ 788

Query: 76   PISEAEIKQALFDLHPHKAPGPDG 5
             +++ E++ A+F +   +APG DG
Sbjct: 789  SVTDQEVRDAVFAIGADRAPGFDG 812


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  174 bits (440), Expect = 6e-41
 Identities = 106/319 (33%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
 Frame = -1

Query: 955 NDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGYVEEKLDR 776
           N+I  N EKRGG  R   SF+ F +FI   G+ ++   G  F+W   R  + +V ++LDR
Sbjct: 36  NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSWRGMRY-DWFVRQRLDR 94

Query: 775 VFGSVEWCLKFPKTTVQAFFRMSSDH--CLIFLNEFEEVNKKRHKRFQFDRRWVDQEGAE 602
              +  W   FP    +      SDH   ++F+   +E   KR  +F+FD R  D +   
Sbjct: 95  AMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFV---DEARVKRRGQFRFDNRLRDNDVVN 151

Query: 601 DLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESLRAMDG 422
            LI++ W+   + + +     K+  CR E++ W   + LNSA  +     +LE     D 
Sbjct: 152 ALIQETWTNAGDASVLT----KMNQCRREIINWTRLQNLNSAELIEKTQKALEEALTADP 207

Query: 421 DRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTNGISQL 242
                    L A L  AY  EE FW+Q+SRV WL +GD+NT YFHAVT  RR  N ++ +
Sbjct: 208 PNP-TTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNRLTVM 266

Query: 241 ISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLILPISEA 62
              NG     E +I + ++ ++  +FTSES    S     I   +S   N  L    ++ 
Sbjct: 267 EDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDE 326

Query: 61  EIKQALFDLHPHKAPGPDG 5
           E+K A+F ++  KAPGPDG
Sbjct: 327 EVKDAVFSINASKAPGPDG 345


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  173 bits (438), Expect = 1e-40
 Identities = 98/325 (30%), Positives = 164/325 (50%)
 Frame = -1

Query: 976  WFLAGDFNDICSNLEKRGGRVRSAWSFVRFNNFIRDMGMQEIPLLGEEFTWANNRSGEGY 797
            W L GDFN+I SN EK GG  R  W+F  F N +    +++I  +G+ F+W   R     
Sbjct: 512  WILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHT- 570

Query: 796  VEEKLDRVFGSVEWCLKFPKTTVQAFFRMSSDHCLIFLNEFEEVNKKRHKRFQFDRRWVD 617
            V+  LDR F + E    FP   ++      SDH  +FL+  E+   ++ + F+FD+R ++
Sbjct: 571  VKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLS-LEKTETRKMRPFRFDKRLLE 629

Query: 616  QEGAEDLIKKAWSINVEGNAMYQVHHKVKNCRIELLKWNSAKQLNSASQVVHLNSSLESL 437
                +  +K  W+  + G   + +  +V+ CR  + K      LNS  ++  L ++L+  
Sbjct: 630  VPHFKTYVKAGWNKAINGQRKH-LPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKA 688

Query: 436  RAMDGDRDWDQWNRLKAELHQAYNEEEIFWQQKSRVNWLKAGDKNTKYFHAVTNQRRMTN 257
             +     +    + ++ EL  AY +EE +WQQKSR  W+K GD+NT++FHA T  R   N
Sbjct: 689  MSSVNRTERRTISHIQRELTVAYRDEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVN 748

Query: 256  GISQLISENGAVCVTEMEIEKEVTSFYSNLFTSESQPGISSQLHGIPQSISPELNHRLIL 77
             +  +  E G +   + EI      F++ ++ S  +P       G    ++ ++N  L  
Sbjct: 749  RLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTK 808

Query: 76   PISEAEIKQALFDLHPHKAPGPDGM 2
             +S+ EI  A+  +   KAPGPDG+
Sbjct: 809  DLSDLEIYNAICHIGDDKAPGPDGL 833