BLASTX nr result
ID: Rehmannia25_contig00003214
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00003214
(2460 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot... 1295 0.0
gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform v... 1151 0.0
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus] 799 0.0
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] gi|82... 750 0.0
gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus] 622 e-175
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|5131... 620 e-175
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] g... 620 e-175
gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus] 619 e-174
gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus] 619 e-174
gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus] 612 e-172
ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus] gi|1... 611 e-172
ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03... 608 e-171
dbj|BAJ41520.1| 1a protein [Brome mosaic virus] 607 e-171
gb|ADW09019.1| replication protein 1a [Brome mosaic virus] 606 e-170
gb|ABF83485.1| 1a [Brome mosaic virus] 605 e-170
emb|CAA41361.1| 1a protein [Brome mosaic virus] 605 e-170
ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|2253... 602 e-169
ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|... 597 e-168
ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus] gi... 584 e-164
gb|AER35120.1| putative RNA helicase and methyltransferase [Cucu... 583 e-163
>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
gi|398650492|dbj|BAM34543.1| replication protein 1a
[Amazon lily mild mottle virus]
Length = 945
Score = 1295 bits (3350), Expect = 0.0
Identities = 635/801 (79%), Positives = 686/801 (85%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MAFSFNVRDLVDAEG+QAIGV+ALVDSLATQ+A DQIEYSKR+ +VFIRQQLSV EGEKI
Sbjct: 1 MAFSFNVRDLVDAEGAQAIGVRALVDSLATQIAHDQIEYSKRSNKVFIRQQLSVAEGEKI 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 417
RKRFGGAYEL+LTQEFTAPHSFAAALR CETLECLDFFP+GEILDFGGSWLFHWKRG V
Sbjct: 61 RKRFGGAYELQLTQEFTAPHSFAAALRTCETLECLDFFPDGEILDFGGSWLFHWKRGKPV 120
Query: 418 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 597
HSCCPILDARDAAR QERLVHMEK+VR+SS Y +LPGPNFC +AE+C VQCPYAI IH
Sbjct: 121 HSCCPILDARDAARQQERLVHMEKLVRKSSKTYADLPGPNFCDQRAEECSVQCPYAICIH 180
Query: 598 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 777
GGYDMGFQTLC+AMHKHGCVMLRGTMMFD+EMLLY+ GFI DLNCVWS R +AFDFRD
Sbjct: 181 GGYDMGFQTLCAAMHKHGCVMLRGTMMFDAEMLLYKDGFIPDLNCVWSIRGDKIAFDFRD 240
Query: 778 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHC 957
ESTLSY HSFKNVKSFLTDQ+HVIGTTAYILERC I+ GIMSYK+TAVSGDIPRTKIRHC
Sbjct: 241 ESTLSYCHSFKNVKSFLTDQAHVIGTTAYILERCVIDMGIMSYKVTAVSGDIPRTKIRHC 300
Query: 958 IWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLI 1137
IWFPRTRDYLHINVVD SKV+HRLAWRKVKVKLDTVREVEEIAFRCFK+ KPWEENLRLI
Sbjct: 301 IWFPRTRDYLHINVVDKSKVAHRLAWRKVKVKLDTVREVEEIAFRCFKENKPWEENLRLI 360
Query: 1138 ASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWW 1317
ASTLSAKSSTIIVNGMSMMAGERLDP DYHYVAFSLLLNCKRKFEELQ VYKKIVWQGWW
Sbjct: 361 ASTLSAKSSTIIVNGMSMMAGERLDPLDYHYVAFSLLLNCKRKFEELQAVYKKIVWQGWW 420
Query: 1318 NHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELEALSGSKSWEDDA 1497
NHCT WWSEST+FQDFLA CFPSLLDYYHSKVFVEKI EC VFESEL AL GSKSW DDA
Sbjct: 421 NHCTGWWSESTKFQDFLAVCFPSLLDYYHSKVFVEKISECVVFESELAALEGSKSWSDDA 480
Query: 1498 YSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVVIKD 1677
Y++ SK KE EK+ + E+ K + + ++ D
Sbjct: 481 YNILNNNLLLCALALSKCKEHKPEKEKEKEEVLAVPSKATPTLVEVKEEEKLDTPIIAVD 540
Query: 1678 TDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLKLG 1857
RPGRME+RAQAKDEFVAYTRK++SNAAANL+RLWKLCGGSGSDNFVSTNCL+VLKLG
Sbjct: 541 ---RPGRMEIRAQAKDEFVAYTRKINSNAAANLSRLWKLCGGSGSDNFVSTNCLDVLKLG 597
Query: 1858 DSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAM 2037
DSLINFHKRSG+I++TNETY+VGFNGNGLGVK DENYIVDKTCILDNL +IAEGADKA
Sbjct: 598 DSLINFHKRSGFIYKTNETYEVGFNGNGLGVKRDDENYIVDKTCILDNLEAIAEGADKAS 657
Query: 2038 NSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVR 2217
S+A+ +L+DGVAGCGKTTSICDQFNAE+DLIVTANRKS+ EIR KLFKDSPD GK +VR
Sbjct: 658 VSTASIILVDGVAGCGKTTSICDQFNAESDLIVTANRKSAVEIRHKLFKDSPDAGKIYVR 717
Query: 2218 TADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQ 2397
TADSVLMHDCI A RILFDE GLLHF FGDSEQI+FINRD+TF
Sbjct: 718 TADSVLMHDCIKAERILFDEVGLLHFGQLVAVARKVEAKVVLGFGDSEQIAFINRDRTFN 777
Query: 2398 MKYSQLSVDESTIVKHTYRCP 2460
+ YSQL VDEST TYRCP
Sbjct: 778 LNYSQLVVDESTTATTTYRCP 798
>gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
Length = 943
Score = 1151 bits (2977), Expect = 0.0
Identities = 565/805 (70%), Positives = 654/805 (81%), Gaps = 4/805 (0%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MAFSFNVRDLVDAEGSQA+GV+ALVDSLAT++A+DQIEY KR+++V++RQ L+VQEGEKI
Sbjct: 1 MAFSFNVRDLVDAEGSQALGVRALVDSLATKLAEDQIEYQKRSQKVYVRQMLTVQEGEKI 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGEILDFGGSWLFHWKRGSQV 417
RKRFGGA++L LTQEF APHSFAAALR CETLECLDFFP+G++LDFGGSWLFHW+RG QV
Sbjct: 61 RKRFGGAFDLALTQEFVAPHSFAAALRTCETLECLDFFPQGQVLDFGGSWLFHWQRGHQV 120
Query: 418 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 597
HSCCP+LD RDA RHQER+VHM+K+V + SK+ LP +FC L+AE+C+VQCPYAI IH
Sbjct: 121 HSCCPVLDIRDACRHQERIVHMQKLVLKRPSKFEALPAADFCTLRAEECKVQCPYAICIH 180
Query: 598 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDFRD 777
G YDMGF+T+C AM++HG V+LRGTMMFDSEMLLY+ GF++DLNCVWS ++FDFRD
Sbjct: 181 GAYDMGFETMCKAMNRHGTVLLRGTMMFDSEMLLYKEGFMADLNCVWSISGDRISFDFRD 240
Query: 778 ESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHC 957
ESTLSYTHSFKNVKSFLTDQ+ V AY+LERC+IE+GIMS+KITAVSGD+PR++IRHC
Sbjct: 241 ESTLSYTHSFKNVKSFLTDQAFVYNNVAYLLERCSIEYGIMSFKITAVSGDVPRSRIRHC 300
Query: 958 IWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLI 1137
+WFPRTRDYLHINVVD + S+RLAWRKVKVK+DTVREVEEIAFRCFK+ KPWEENLRLI
Sbjct: 301 VWFPRTRDYLHINVVDTT--SNRLAWRKVKVKIDTVREVEEIAFRCFKEAKPWEENLRLI 358
Query: 1138 ASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWW 1317
ASTLSAKSSTIIVNGMSMMAGERLD DYHYVAFSLLLNCKRKFEELQCVYKKIVWQG W
Sbjct: 359 ASTLSAKSSTIIVNGMSMMAGERLDVLDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGRW 418
Query: 1318 NHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELEALSGSKSWEDDA 1497
+HCT+WWSE RFQ FL +CFPSLL+YY+SKVFVEKI ECQVFESELEA+SG +W + A
Sbjct: 419 HHCTRWWSEGDRFQKFLESCFPSLLEYYNSKVFVEKIVECQVFESELEAISGCTNWTETA 478
Query: 1498 YSVXXXXXXXXXXXXSK---TKEKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVV 1668
+ SK + E K + + D +P+V + S V
Sbjct: 479 TNCLNNSLLLCALALSKAPLSPENPKPETVADPRPEVSSDDKIES-------------VE 525
Query: 1669 IKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVL 1848
KD GRMELRAQAK EFVAYTR L+SNAA+NL RLW+LCGG GSDNFVST CLNVL
Sbjct: 526 TKDAVKVDGRMELRAQAKAEFVAYTRTLNSNAASNLKRLWQLCGGDGSDNFVSTECLNVL 585
Query: 1849 KLGDSLINFHKRSGWIFETNETYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGAD 2028
KLGDS INFHK SGWIF T+ +Y+VG+NG GLGVK ENYIVDKTC LDNLA+IA+GA+
Sbjct: 586 KLGDSQINFHKSSGWIFPTSTSYEVGYNGRGLGVKGETENYIVDKTCTLDNLAAIADGAE 645
Query: 2029 -KAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDLGK 2205
K + + L+ GCGKTTSI +QF+A +DLIVTANRKS+ EIR+KLF+ SPDLGK
Sbjct: 646 KKPVFQKRSSCLLTVSLGCGKTTSIINQFDANSDLIVTANRKSAVEIRNKLFEFSPDLGK 705
Query: 2206 RFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRD 2385
+FVRTADSVLMHDCITA R+LFDE GLLHF FGDSEQI+FINRD
Sbjct: 706 KFVRTADSVLMHDCITARRLLFDEVGLLHFGQLVAVAGKVQADVVLGFGDSEQIAFINRD 765
Query: 2386 KTFQMKYSQLSVDESTIVKHTYRCP 2460
KTF +KYS+LSVDEST TYRCP
Sbjct: 766 KTFDLKYSRLSVDESTTALTTYRCP 790
>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
Length = 962
Score = 799 bits (2064), Expect = 0.0
Identities = 420/837 (50%), Positives = 544/837 (64%), Gaps = 37/837 (4%)
Frame = +1
Query: 61 AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 240
A SFNVRDL+++ G+ A+GVK LVD+ AT+ A++Q EY KR+K+V++RQ LS +GEK++
Sbjct: 3 ATSFNVRDLINSNGADAMGVKGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62
Query: 241 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 417
KRFGG ++L+L+QEF APHSFA A+RQCETLECL FPE ILDFGGSWLFHW+R V
Sbjct: 63 KRFGGTFDLQLSQEFIAPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 122
Query: 418 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 597
HSCCP+LDARD ARHQER++ M+K V K+ P+FC LKAEDCEV+ PYAISIH
Sbjct: 123 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFEAFESPDFCLLKAEDCEVRSPYAISIH 182
Query: 598 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 753
G YDMGF+ LC AMH HG +MLRGTMMFD+ ML+++ G + DLNC W+K G
Sbjct: 183 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFDEGVMEDLNCRWTKEKGDPFGLRGA 242
Query: 754 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAV 921
+V FDF DESTLSY+HS+KN+KSFLT+ + I Y+LERC I +GIMS+KI AV
Sbjct: 243 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIENVQYVLERCVISYGIMSFKIFAV 302
Query: 922 SGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFK 1101
SG IPRT++RHC+WFP+ RDY++INV++ + W KV+VKLDTVREVEEI FRCFK
Sbjct: 303 SGKIPRTRLRHCVWFPKVRDYVNINVMNPNDPR---IWSKVRVKLDTVREVEEICFRCFK 359
Query: 1102 DQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQ 1281
D KPWEENL+L+ S LS+KSSTIIVNGM+MMAGERLD DYH+VAFSL+L+ +RKF+
Sbjct: 360 DSKPWEENLKLVGSCLSSKSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRKFDMFG 419
Query: 1282 CVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVFESELE 1461
+ W+GW +H K S +D FPSL+ YY FVEK+ +C++F +EL
Sbjct: 420 KAMNSLEWKGWVSHFFKSLWPSGDLRDLFGCYFPSLIRYYDKIEFVEKLTQCEIFVNEL- 478
Query: 1462 ALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQPNTHV 1641
++ ++D + K K+ D + + G + + + V
Sbjct: 479 ----GETDDEDQRDLVTKAADVFKNTLLKVAIKM-SLDKTFKPTEGRGEEKTTATVASSV 533
Query: 1642 VGDVSPKVVIKDTDSRP---------------------GRMELRAQAKDEFVAYTRKLHS 1758
GDV+ K V DT S P GR+ +R +A E+ Y KL
Sbjct: 534 AGDVTEKPV--DTVSGPTIQAPLVMRSNTVTPLSEPLDGRLAVRLEAMKEYKRYLLKLQR 591
Query: 1759 NAAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFN 1932
N +NLA LW LCGG S S+N +ST L +++ DSL+N HK G W+F + Y VG+N
Sbjct: 592 NTESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGSWLFPNDFEYMVGYN 651
Query: 1933 GNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQF 2112
+GLG K +E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 652 SSGLGEKRSNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTAIKKAF 710
Query: 2113 NAETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLL 2289
E+DLIVTAN+KSSE+I +F D+PD+G+ VRTADSVLMH R+LFDE L+
Sbjct: 711 VFESDLIVTANKKSSEDIIKAMFNDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLV 770
Query: 2290 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
HF FGDSEQISF++RD+ F MKY +LS D S T+RCP
Sbjct: 771 HFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDNSDQQIRTFRCP 827
>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
gi|82004832|sp|Q9DUT3.1|1A_PZSVT RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|10185102|emb|CAC08526.1|
unnamed protein product [Pelargonium zonate spot virus]
Length = 962
Score = 750 bits (1936), Expect = 0.0
Identities = 410/836 (49%), Positives = 525/836 (62%), Gaps = 36/836 (4%)
Frame = +1
Query: 61 AFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIR 240
A SFNVRDL+++ G+ A+GV+ LVD+ AT+ A++Q EY KR+K+V++RQ LS +GEK++
Sbjct: 3 ATSFNVRDLINSNGADAMGVRGLVDAHATKAAEEQFEYIKRSKKVWVRQILSASDGEKMQ 62
Query: 241 KRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKRGSQV 417
KRFGG ++L+L++ PHSFA A+RQCETLECL FPE ILDFGGSWLFHW+R V
Sbjct: 63 KRFGGTFDLQLSKNL-CPHSFAGAMRQCETLECLSSFPEDSLILDFGGSWLFHWQRQHNV 121
Query: 418 HSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIH 597
HSCCP+LDARD ARHQER++ M+K V K+ P+FC LKAEDCEVQ PYAISIH
Sbjct: 122 HSCCPVLDARDMARHQERMISMQKCVAHRPGKFESFESPDFCLLKAEDCEVQSPYAISIH 181
Query: 598 GGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG-------- 753
G YDMGF+ LC AMH HG +MLRGTMMFD+ ML++ G + DLNC W+K G
Sbjct: 182 GAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEGVMEDLNCRWTKEKGDPYGLRGA 241
Query: 754 ----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAV 921
+V FDF DESTLSY+HS+KN+KSFLT+ + IG Y+LERC I +GIMS+KI AV
Sbjct: 242 PCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGNVQYVLERCVISYGIMSFKIFAV 301
Query: 922 SGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFK 1101
SG IP T++RHC+WFP+ RDY++IN D W KV+VKLDTVREVEEI FRC K
Sbjct: 302 SGKIPHTRLRHCVWFPKVRDYVNINPSDPR------IWSKVRVKLDTVREVEEICFRCPK 355
Query: 1102 DQKP-----WEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRK 1266
D E I S L SSTIIVNGM+MMAGERLD DYH+VAFSL+L+ +RK
Sbjct: 356 DVSKIEVMGGESETCGIMSVL--YSSTIIVNGMTMMAGERLDVLDYHHVAFSLMLSARRK 413
Query: 1267 FEELQCVYKKIVWQGWWNHCTKWWSESTRFQDFLATCFPSLLDYYHSKVFVEKICECQVF 1446
F+ + W+GW +H K S +D FPSL+ YY FVEK+ C+VF
Sbjct: 414 FDMFGKAMNSLEWKGWVSHFFKSLWPSGDLRDLFGRYFPSLIRYYDKIEFVEKLTHCEVF 473
Query: 1447 ESELEALSGSKSWED---DAYSVXXXXXXXXXXXXSKTK-----EKLKEKDIQDEKPDVE 1602
+EL ++ K D +A V S K E+ KE+
Sbjct: 474 VNEL-GMTDDKEQRDVVAEAADVLKNTLLKVAIKMSLDKTFRPAEEKKEERTTTTTVTSS 532
Query: 1603 GGKPVHSQPNTHVVGDV--SPKVVIKDT-----DSRPGRMELRAQAKDEFVAYTRKLHSN 1761
V +P V G +P V ++T + GR+ +R +A E+ Y KL N
Sbjct: 533 AVGDVDERPAGTVSGPTIQAPSVTQENTVTSLSEPLDGRLAVRLEAMKEYKRYLLKLQKN 592
Query: 1762 AAANLARLWKLCGG-SGSDNFVSTNCLNVLKLGDSLINFHKR-SGWIFETNETYQVGFNG 1935
+NLA LW LCGG S S+N +ST L +++ DSL+N HK GW+F + Y VG+N
Sbjct: 593 TESNLAGLWSLCGGTSDSNNLISTEVLRIMRQSDSLVNLHKADGGWLFPNDFEYMVGYNS 652
Query: 1936 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 2115
+GLG K P+E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 653 SGLGEKRPNEVFLVNKDCVLNNNVLLANGV-PAQPPKGNINLMDGVAGCGKTTAIKRAFV 711
Query: 2116 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLLH 2292
E+DLIVTAN+KSSE+I +F+D+PD+G+ VRTADSVLMH R+LFDE L+H
Sbjct: 712 FESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVH 771
Query: 2293 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
F FGDSEQISF++RD+ F MKY +LS D S T+RCP
Sbjct: 772 FGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCP 827
>gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 622 bits (1604), Expect = e-175
Identities = 347/826 (42%), Positives = 485/826 (58%), Gaps = 25/826 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 411
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWTNLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1300 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1449
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1630 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1791
N V D P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1792 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 1968
+ G G + + L D +IN H G W++ Y+VGFN +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFNDSGLGPKFDDEL 648
Query: 1969 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2148
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2149 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2322
KS+E++R+ LF D+P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPDNPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2323 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF++KY L D IV T+RCP
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCP 814
>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|513125395|dbj|BAD98316.2|
1a protein [Cassia yellow blotch virus]
Length = 955
Score = 620 bits (1599), Expect = e-175
Identities = 348/828 (42%), Positives = 490/828 (59%), Gaps = 27/828 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA ++ L+ +G+++ GV +VD+ ATQ Q+E+ +R+K++ IR +L+ E E
Sbjct: 1 MASLIDLNSLISKKGAESRGVLDIVDNQATQQVLSQVEHLRRSKKINIRNKLAPSEVEAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS- 411
+ R+GGA++L LTQE+ APHS A ALR E +C+D FP E I+DFGGSW H+ R
Sbjct: 61 KARYGGAFDLNLTQEYNAPHSLAGALRIAEHYDCMDSFPPEDRIIDFGGSWWHHYARKDF 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VH CCPIL RDAARH+ER+ + ++++ SS Y E P +FC KA DC VQ +AI
Sbjct: 121 RVHCCCPILGVRDAARHEERMCRLRRLLQ--SSDYEETP--DFCLNKARDCNVQADWAIC 176
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNGIVAFDF 771
IHGGYDMGF+ LC +M HG +L+GT+MFD ML ESGF+ L C W K G V FDF
Sbjct: 177 IHGGYDMGFKDLCHSMRSHGVRILKGTIMFDGAMLFDESGFLPLLKCRWKKEKGFVKFDF 236
Query: 772 RDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIR 951
+ESTLSY HS+ + SF T+ + IG+T Y+LER I+ IM+YKI A P+ +R
Sbjct: 237 ENESTLSYIHSWDKLGSFFTESVYRIGSTTYLLERELIKCNIMTYKIIATDLPCPKETLR 296
Query: 952 HCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLR 1131
HC+WF Y+ +NV + + WR+V+V + TVREVEEI+FRCFK+ K W EN++
Sbjct: 297 HCVWFENLSQYVAVNVPVDFNLCR---WRRVRVAVSTVREVEEISFRCFKENKEWTENMK 353
Query: 1132 LIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQG 1311
+AS LSAKSST+I+NG ++MAGERL DYH VAF+L LN K+E L+ ++ + W G
Sbjct: 354 AVASVLSAKSSTVIINGQAIMAGERLSIDDYHLVAFALTLNLYMKYENLRSFHEGLKWGG 413
Query: 1312 WWNH-CTKWW-------SESTRFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFESELE 1461
WWNH T++W + L FP L LD Y S F+ KI + FE +
Sbjct: 414 WWNHFLTRFWWRGDVPTDSRPWLVNLLGQWFPRLRLDTYAESCEFIAKISDVAEFECD-S 472
Query: 1462 ALSG--SKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPV----HS 1623
SG + + +A S+ K+K KEK+ ++P E +PV
Sbjct: 473 VPSGFLQRFFHSEADLQRRIQVELDTVKDSRDKKK-KEKEKASKEPKSE--EPVEEVFEE 529
Query: 1624 QPNTHVVGDVSPKV------VIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARL 1785
P+ + DV P V K T SR ++ E+ Y ++LH N+ +NL R+
Sbjct: 530 APDDFIRDDVKPATDGGTVCVDKSTVSRELSLK-------EYSNYCQRLHENSLSNLRRI 582
Query: 1786 WKLCGGSGSDNFVSTNCLNVLKLGDSLINFH-KRSGWIFETNETYQVGFNGNGLGVKSPD 1962
W L GG G+ + + L D LIN H SGW++ T + Y +G+N +GLG K
Sbjct: 583 WLLAGGKGT-VISNKSMLETYHRVDCLINAHIAGSGWLYPTEQEYTIGYNDDGLGPKQAG 641
Query: 1963 ENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTA 2142
E +IVDK+C++ N AS+A+ + + L DGVAGCGKTT+I + F+ E D+IVTA
Sbjct: 642 ETFIVDKSCVISNNASLAKASQGLKAPKCSVTLCDGVAGCGKTTAIKNTFSIEKDIIVTA 701
Query: 2143 NRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXX 2316
N+KS+ ++R+ +F + P ++ +F+RTADS LMH + R+L DE GLLHF
Sbjct: 702 NKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLPSCQRLLIDEAGLLHFGQVLAVA 761
Query: 2317 XXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGDSEQISF +RD TF+ ++ ++ D +V TYRCP
Sbjct: 762 AICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCP 809
>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
gi|259651322|dbj|BAI40161.1| 1a protein [Melandrium
yellow fleck virus]
Length = 948
Score = 620 bits (1599), Expect = e-175
Identities = 342/820 (41%), Positives = 486/820 (59%), Gaps = 27/820 (3%)
Frame = +1
Query: 82 DLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKRFGGAY 261
+L+ GS++ GV+ +VD AT+ +Q+E+ KR+K++ +R +LS QE + R R+GGAY
Sbjct: 5 NLIAERGSKSHGVEMVVDDQATKQVLEQVEHLKRSKRITVRNKLSPQEADAFRARYGGAY 64
Query: 262 ELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRGS-QVHSCCPI 435
ELKLTQE+ APHS A ALR E +CL FP E ++DFGGSW H+ R +VHSCCPI
Sbjct: 65 ELKLTQEYEAPHSLAGALRIAEHYDCLGQFPLEDPVIDFGGSWWHHYSREDYRVHSCCPI 124
Query: 436 LDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAISIHGGYDMG 615
L RDA RH+ERL M K++ P+FC KAEDC+VQ +AI IHGGYDMG
Sbjct: 125 LGVRDATRHEERLCRMRKLLEVKDFSQA----PDFCLNKAEDCKVQADWAICIHGGYDMG 180
Query: 616 FQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IVAFDFRDES 783
F+ LC AM+ HG +LRGT+MFD ML G I LNC W + ++ FDF +ES
Sbjct: 181 FKNLCKAMNSHGVRILRGTIMFDGAMLFDRQGTIPLLNCRWMREGSGSSEVIKFDFVNES 240
Query: 784 TLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPRTKIRHCIW 963
TLSY H+++N+ SFLT+ +G+T Y+LER + GIMSYKI A + P +RHC+W
Sbjct: 241 TLSYVHNWRNLGSFLTESVCCVGSTTYLLEREVLRCGIMSYKIIATNVKCPPETLRHCVW 300
Query: 964 FPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWEENLRLIAS 1143
F Y+ +NV D+ ++ W+ V+V + TVREVEEIAFRCFK+ K W EN++ +AS
Sbjct: 301 FENISQYVSVNVPDDWSFAN---WKLVRVAISTVREVEEIAFRCFKENKDWAENMKAVAS 357
Query: 1144 TLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKIVWQGWWNH 1323
LSAKSST+I+NG ++MAGER+D DYH VAFSL +N +K+E L+ + ++ W+GW+NH
Sbjct: 358 VLSAKSSTVIINGQAIMAGERIDILDYHLVAFSLTMNLYQKYERLRDYHDELEWKGWFNH 417
Query: 1324 C-TKWWSESTR------FQDFLATCFP--SLLDYYHSKVFVEKICECQVFESELEALSGS 1476
++ W + +LA FP L Y + +F+ KI + + FE + +S
Sbjct: 418 FKSRLWKGGKGVDGVGFIRGYLADKFPRLKLNTYMDTLMFITKISDVKEFECDSVPVSRL 477
Query: 1477 KSW---EDDAYSVXXXXXXXXXXXXS-KTKEKLKEKDIQDEKPDVEGGKP----VHSQPN 1632
+S+ ++DAY S K + +E + D D+E P V +P
Sbjct: 478 RSFFCDKNDAYERAVEEFLDAQDKKSRKAVVRKQEDEFVDASEDLETSGPVVVDVKEEPK 537
Query: 1633 T-HVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLCGGSG 1809
+G++ PKVV R+ A EF Y + H N +NL +LW L G G
Sbjct: 538 APTTIGNLDPKVV------------ARSGAISEFTEYCDRQHLNTTSNLHQLWTLMGCKG 585
Query: 1810 SDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYIVDKT 1986
D + + ++ D L+N H SG W++ Y VG+N +GL VK +E Y+VDKT
Sbjct: 586 -DQVHNKSVVDTYHRTDDLVNVHFPSGRWMYPHEYEYVVGYNDDGLSVKFDNELYVVDKT 644
Query: 1987 CILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEI 2166
CI+ N +AE + + DGVAGCGKTT+I + F E D++VTANRKS++++
Sbjct: 645 CIVSNQQKLAEACRGLSVPTCPVYMCDGVAGCGKTTAIKNTFQFERDVVVTANRKSADDV 704
Query: 2167 RDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXX 2340
R +F ++P ++ R++RTADS +MH R+L DE GL+H+
Sbjct: 705 RAAIFPENPNNEIATRYIRTADSAIMHGLPKCKRVLIDEAGLMHYGQLLAVAAISGCDEV 764
Query: 2341 XXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF+MK++ ++ D +VK TYRCP
Sbjct: 765 VAFGDTEQISFKSRDVTFRMKHNAINYDSRELVKTTYRCP 804
>gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 619 bits (1596), Expect = e-174
Identities = 345/826 (41%), Positives = 485/826 (58%), Gaps = 25/826 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 411
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYHAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGMLPLLKCRWMKSGKGKSEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLRCPK 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1300 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1449
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTAISSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKIDEEEFQDAIDIP 530
Query: 1630 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1791
N V D P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1792 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 1968
+ G G + + L D +IN H G W++ Y+VG+N +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLGPKFDDEL 648
Query: 1969 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2148
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2149 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2322
KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2323 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF++KY L D IV T+RCP
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCP 814
>gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 619 bits (1595), Expect = e-174
Identities = 345/826 (41%), Positives = 485/826 (58%), Gaps = 25/826 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 411
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1300 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1449
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1630 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1791
N V DV P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1792 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 1968
+ G G + + L D +IN H G W++ Y+VG+N +GL K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLSPKFDDEL 648
Query: 1969 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2148
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDNLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2149 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2322
KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2323 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF++KY L D IV T+RCP
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCP 814
>gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 612 bits (1578), Expect = e-172
Identities = 343/826 (41%), Positives = 482/826 (58%), Gaps = 25/826 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 411
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMGF LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGFTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF + STLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNGSTLSYIHSWANLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1300 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1449
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEAEKIDEEEFQDAIDIP 530
Query: 1630 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1791
N V DV P+V + + P R A EF Y R+L +NA +NL RLW
Sbjct: 531 NDAVRDDVKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDANAVSNLRRLWA 589
Query: 1792 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 1968
+ G G + + L D +IN H G W++ Y+VG+N +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGYNDSGLGPKFDDEL 648
Query: 1969 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2148
Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN DL+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFNIAEDLVVTANK 708
Query: 2149 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2322
KS+E++R+ LF ++P ++ + ADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPENPSSEIALSYKGPADSALMHGLPQCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2323 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF++KY L D IV T+RCP
Sbjct: 769 CKCQSFLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCP 814
>ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus]
gi|137252|sp|P27752.1|ORF1A_CCMV RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|331599|gb|AAA46369.1| 1a
protein [Cowpea chlorotic mottle virus]
Length = 958
Score = 611 bits (1576), Expect = e-172
Identities = 343/826 (41%), Positives = 481/826 (58%), Gaps = 25/826 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
MA S ++ L+ G+ + G +V+ A + +Q++YSKR+K++ IR +L+ E
Sbjct: 1 MASSLDLLKLISERGADSRGASDIVEQQAVKQLLEQVDYSKRSKKINIRNKLTPDEENAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHWKR-GS 411
R R+GGA++L LTQ++ APHS A ALR E +CL FP + I+DFGGSW H+ R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLSSFPPLDPIIDFGGSWWHHYSRKDT 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
++HSCCP+L RDAARH+ERL M K+++ + P+FC +AE C VQ +AI
Sbjct: 121 RIHSCCPVLGVRDAARHEERLCRMRKLLQECDDRE---DLPDFCIDRAESCSVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMG+ LC AMH HG +LRGT+MFD ML G + L C W K ++ ++
Sbjct: 178 IHGGYDMGYTGLCEAMHSHGVRILRGTIMFDGAMLFDNEGVLPLLKCRWMKSGKGKSEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY HS+ N+ SFLT+ HVIG T Y+LER ++ IM+YKI A + P+
Sbjct: 238 KFDFMNESTLSYIHSWTNLGSFLTESVHVIGGTTYLLERELLKCNIMTYKIVATNLKCPK 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +N+ ++ ++H W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFENISQYVAVNIPEDWNLTH---WKPVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ IAS LSAKSST+I+NG ++MAGERL+ +YH VAF+L +N +K+E ++ Y ++
Sbjct: 355 ENMKAIASILSAKSSTVIINGQAIMAGERLNIDEYHLVAFALTMNLYQKYENIRNFYSEM 414
Query: 1300 VWQGWWNHCTK--WWSEST------RFQDFLATCFPSL-LD-YYHSKVFVEKICECQVFE 1449
W+GW NH WW ST + ++FLA FP L LD Y S VF+ KI + + FE
Sbjct: 415 EWKGWVNHFKTRFWWGGSTATSSTGKIREFLAGKFPWLRLDSYKDSFVFLSKISDVKEFE 474
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
++ +S +S+ +S S K + ++K + EK D E + P
Sbjct: 475 NDSVPISRLRSF----FSSEDLMERIELELESAQKRRREKKKKEVEKIDEEEFQDAIDIP 530
Query: 1630 NTHVVGDV------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWK 1791
N V D P+V + + P R A EF Y R+L NA +NL RLW
Sbjct: 531 NDAVRDDAKPEKEPKPEVTVGAEPTGPEEAS-RHFAIKEFSDYCRRLDCNAVSNLRRLWA 589
Query: 1792 LCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDEN 1968
+ G G + + L D +IN H G W++ Y+VGFN +GLG K DE
Sbjct: 590 IAGCDGR-TARNKSILETYHRVDDMINLHYPGGQWLYPKKYDYEVGFNDSGLGPKFDDEL 648
Query: 1969 YIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANR 2148
Y+VDK+CI N +++ D S L DGVAGCGKTT+I N L+VTAN+
Sbjct: 649 YVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSASNIAEHLVVTANK 708
Query: 2149 KSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXX 2322
KS+E++R+ LF +P ++ + +RTADS LMH R+L DE GLLH+
Sbjct: 709 KSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLPRCKRLLVDEAGLLHYGQLLAVAAL 768
Query: 2323 XXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF++KY L D IV T+RCP
Sbjct: 769 CKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCP 814
>ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03588.1|ORF1A_BMV
RecName: Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|58729|emb|CAA26228.1| unnamed
protein product [Brome mosaic virus]
Length = 961
Score = 608 bits (1568), Expect = e-171
Identities = 342/824 (41%), Positives = 485/824 (58%), Gaps = 23/824 (2%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGADSQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 759
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKESKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1300 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1452
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1453 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1617
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEEFHDAPESSSPE 534
Query: 1618 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1797
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1798 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 1974
GG GS+ + + D ++N H +G W++ Y VG+N +GLG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHADETYI 653
Query: 1975 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2154
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2155 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2328
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTYNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2329 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD F++ + L D +V TYRCP
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCP 817
>dbj|BAJ41520.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 607 bits (1566), Expect = e-171
Identities = 342/824 (41%), Positives = 485/824 (58%), Gaps = 23/824 (2%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGAASQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 759
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTVLRDGM 414
Query: 1300 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1452
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1453 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1617
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEIPQEEFHDAPESSSPE 534
Query: 1618 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1797
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1798 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 1974
GG GS+ + + D ++N H +G W++ Y VG+N +GLG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHADETYI 653
Query: 1975 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2154
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2155 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2328
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2329 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD F++ + L D +V TYRCP
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCP 817
>gb|ADW09019.1| replication protein 1a [Brome mosaic virus]
Length = 961
Score = 606 bits (1562), Expect = e-170
Identities = 341/824 (41%), Positives = 484/824 (58%), Gaps = 23/824 (2%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGADSQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHFDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 759
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGTDEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1300 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1452
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1453 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKL--KEKDIQDEKPDV-EGGKPV 1617
+ +S +++ E+D + SK K K+ + Q+E D E P
Sbjct: 475 DSVPISRLRTFWTEEDLFDRLEHEVQTAKTKRSKKKAKVPPAAEMPQEEFHDAPESSSPE 534
Query: 1618 HSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1797
+ V DV P + R R A EFV Y ++LH+N+ +NL LW +
Sbjct: 535 SVSDDVKPVTDVVPGAEVSVAVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHLWDIS 594
Query: 1798 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 1974
GG GS+ + + D ++N H +G W++ Y VG+N + LG K DE YI
Sbjct: 595 GGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHSLGPKHADETYI 653
Query: 1975 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2154
VDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTANRKS
Sbjct: 654 VDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTANRKS 713
Query: 2155 SEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXX 2328
+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 714 AEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCYRLLVDEAGLLHYGQLLVVAALSK 773
Query: 2329 XXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD F++ + L D +V TYRCP
Sbjct: 774 CSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCP 817
>gb|ABF83485.1| 1a [Brome mosaic virus]
Length = 961
Score = 605 bits (1561), Expect = e-170
Identities = 342/829 (41%), Positives = 486/829 (58%), Gaps = 28/829 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLIAEKGAASQSAQDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 759
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1300 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1452
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1453 ELEALSGSKSW--EDDAYSVXXXXXXXXXXXXSKTKEKLKEKDI-------QDEKPDV-E 1602
+ +S +++ E+D + +KTK K+ + Q+E D E
Sbjct: 475 DSVPISRLRTFWTEEDLFD-----RLEHEVQTAKTKRSKKKAIVPPAAEIPQEEFHDAPE 529
Query: 1603 GGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLAR 1782
P + V DV P + R R A EFV Y ++LH+N+ +NL
Sbjct: 530 SSSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRH 589
Query: 1783 LWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSP 1959
LW + GG GS+ + + D ++N H +G W++ Y VG+N +GLG K
Sbjct: 590 LWDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHA 648
Query: 1960 DENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVT 2139
DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVT
Sbjct: 649 DETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVT 708
Query: 2140 ANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXX 2313
ANRKS+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVV 768
Query: 2314 XXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD F++ + L D +V TYRCP
Sbjct: 769 AALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCP 817
>emb|CAA41361.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 605 bits (1559), Expect = e-170
Identities = 342/828 (41%), Positives = 483/828 (58%), Gaps = 27/828 (3%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + +VD+ Q QIEY+KR+K++ +R +LS++E +
Sbjct: 1 MSSSIDLLKLISEKGAASQSALDIVDNQVAQQLSAQIEYAKRSKKINVRNKLSIEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CLD FP E ++DFGGSW H+ +R
Sbjct: 61 RDRYGGAFDLNLTQQYHAPHSLAGALRVAEHYDCLDSFPPEDPVIDFGGSWWHHFSRRDK 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCP+L RDAARH+ER+ M K+++ S + E+P NFC +A+DC+VQ +AI
Sbjct: 121 RVHSCCPVLGVRDAARHEERMCRMRKILQESDD-FDEVP--NFCLNRAQDCDVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG----IV 759
IHGGYDMGFQ LC AMH HG +LRGT+MFD ML GF+ L C W + ++
Sbjct: 178 IHGGYDMGFQGLCDAMHSHGVRVLRGTVMFDGAMLFDREGFLPLLKCHWQRDGSGADEVI 237
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY H ++++ SF T+ H I T Y+LER ++ IM+YKI A + PR
Sbjct: 238 KFDFENESTLSYIHGWQDLGSFFTESVHCIDGTTYLLEREMLKCNIMTYKIIATNLRCPR 297
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
+RHC+WF Y+ +++ ++ ++ W+ V+V TVREVEEIAFRCFK+ K W
Sbjct: 298 ETLRHCVWFEDISKYVGVSIPEDWSLNR---WKCVRVAKTTVREVEEIAFRCFKENKEWT 354
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN++ +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L LN +K+E+L + +
Sbjct: 355 ENMKAVASILSAKSSTVIINGQAIMAGERLDIEDYHLVAFALTLNLYQKYEKLTALRDGM 414
Query: 1300 VWQGWWNHCTK--WW-SESTR----FQDFLATCFPSL-LD-YYHSKVFVEKICECQVFES 1452
W+GW +H WW +S+R + LA+ FP L LD Y S F+ ++ + FE
Sbjct: 415 EWKGWCHHFKTRFWWGGDSSRAKVGWLRTLASRFPLLRLDSYADSFKFLTRLSNVEEFEQ 474
Query: 1453 ELEALSGSKS-WEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDI-------QDEKPDV-EG 1605
+ +S ++ W + V +KTK K+ + Q+E D E
Sbjct: 475 DSVPISRLRTFWTE----VDLFDRLEHEVQTAKTKRSKKKAIVPPAAEIPQEEFHDAPES 530
Query: 1606 GKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARL 1785
P + V DV P + R R A EFV Y ++LH+N+ +NL L
Sbjct: 531 SSPESVSDDVKPVTDVVPDAEVSVEVPTDPRGISRHGAMKEFVRYCKRLHNNSESNLRHL 590
Query: 1786 WKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPD 1962
W + GG GS+ + + D ++N H +G W++ Y VG+N +GLG K D
Sbjct: 591 WDISGGRGSE-IANKSIFETYHRIDDMVNVHLANGNWLYPKKYDYTVGYNEHGLGPKHAD 649
Query: 1963 ENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTA 2142
E YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F DLIVTA
Sbjct: 650 ETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFRMGEDLIVTA 709
Query: 2143 NRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXX 2316
NRKS+E++R LF D + + VRTADS +MH + R+L DE GLLH+
Sbjct: 710 NRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHGVPSCHRLLVDEAGLLHYGQLLVVA 769
Query: 2317 XXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD F++ + L D +V TYRCP
Sbjct: 770 ALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCP 817
>ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|22531640|dbj|BAC10645.1|
1a protein [Spring beauty latent virus]
Length = 958
Score = 602 bits (1552), Expect = e-169
Identities = 339/823 (41%), Positives = 485/823 (58%), Gaps = 22/823 (2%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ S ++ L+ +G+ + V+ +VD+ A ++ Q++Y+ R+K++ IR +LS +E +
Sbjct: 1 MSNSLDLLKLISEKGAASRSVEDIVDNQAAKILNAQVDYANRSKKINIRNKLSPEEADAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-ILDFGGSWLFHW-KRGS 411
R R+GGA++L LTQ++ APHS A ALR E +CL+ FP + I+DFGGSW H+ +R +
Sbjct: 61 RARYGGAFDLNLTQQYNAPHSLAGALRIAEHYDCLENFPSDDPIIDFGGSWWHHYSRRDN 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VH C PIL RDA R +ERL + ++++ S+Y ELP NFC KAE+C+VQ +AI
Sbjct: 121 RVHCCTPILGVRDACRQEERLCRLRRLLQ--DSEYDELP--NFCMNKAEECKVQADWAIC 176
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RNGIV 759
IHGGYDMGF+ LC AM+ HG +LRGT+MFD ML G + L C W + ++ +V
Sbjct: 177 IHGGYDMGFKGLCKAMNSHGVRILRGTIMFDGAMLFDREGRLPLLKCRWKREGSGKSEVV 236
Query: 760 AFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIPR 939
FDF +ESTLSY HS+ N+ SFLT+ IG T Y++ER I+ IM+YKI A + P
Sbjct: 237 KFDFENESTLSYVHSWANLGSFLTESVCTIGATTYMIERELIKCNIMTYKIVATNLRCPV 296
Query: 940 TKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQKPWE 1119
K+RHCIWF Y+ +N+ D ++ W+ +V TVREVEEIAFRCFK+ K W
Sbjct: 297 EKLRHCIWFENISQYVAVNIPDGWSLTK---WKNARVARSTVREVEEIAFRCFKENKDWT 353
Query: 1120 ENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVYKKI 1299
EN+R +AS LSAKSST+I+NG ++MAGERLD DYH VAF+L +N +K+E ++ ++ +
Sbjct: 354 ENMRSVASILSAKSSTVIINGQAIMAGERLDLEDYHLVAFALTMNLYQKYERIRAIHDGM 413
Query: 1300 VWQGWWNHCTK--WW------SESTRFQDFLATCFPSL-LDYYH-SKVFVEKICECQVFE 1449
W+GW +H WW S+ + FL++ FP L LD Y SK F+EKI + + FE
Sbjct: 414 QWKGWVDHFKTRIWWNGDVGGSKVGVIRSFLSSHFPFLRLDSYEDSKCFLEKIVDVKEFE 473
Query: 1450 SELEALSGSKSWEDDAYSVXXXXXXXXXXXXSKTKEKLKEKDIQDEKPDVEGGKPVHSQP 1629
S+ S + SK +EK K K++ E +V + P
Sbjct: 474 SDSVPSSLLSRFFSGNEDFEKRVDDTVKSARSKREEKKKLKELVLESSEVY--EDAVDAP 531
Query: 1630 NTHVVGDVSP----KVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSNAAANLARLWKLC 1797
+ V D P +V D D +++ A EF Y ++L NA +NL R+W L
Sbjct: 532 SESVRDDDKPETGREVRGTDCDLSSSDCNVKSFAIKEFADYNQRLSDNAVSNLRRIWTL- 590
Query: 1798 GGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGNGLGVKSPDENYI 1974
G ++ ST+ L D ++N H G W++ Y VGFN +GLG + DE Y+
Sbjct: 591 AGCNKESVNSTSILETYHRIDDMLNIHYPDGRWLYPNKYEYMVGFNDSGLGYRFADELYL 650
Query: 1975 VDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNAETDLIVTANRKS 2154
VDKTC + N IA+ + + L DGVAGCGKTT+I F++ TDLIVTANRKS
Sbjct: 651 VDKTCGIANCEEIAKACKALKAPNCSITLCDGVAGCGKTTAIKAAFDSSTDLIVTANRKS 710
Query: 2155 SEEIRDKLFKD-SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHFXXXXXXXXXXXX 2331
+E++R+ LF D + + VRTADS +MH R+L DE GLLH+
Sbjct: 711 AEDVREALFGDVNSKIANEVVRTADSAIMHGLPKCSRLLIDEAGLLHYGQLLAVAALCGC 770
Query: 2332 XXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
FGD+EQISF +RD TF+ +++ + D +V T+RCP
Sbjct: 771 ETVLAFGDTEQISFKSRDVTFKFRHAVIEYDRRDVVTETFRCP 813
>ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|sp|Q00020.1|ORF1A_BBMV
RecName: Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|210663|gb|AAA42740.1| 1a
protein [Broad bean mottle virus]
Length = 966
Score = 597 bits (1540), Expect = e-168
Identities = 347/836 (41%), Positives = 484/836 (57%), Gaps = 35/836 (4%)
Frame = +1
Query: 58 MAFSFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKI 237
M+ N+ L+ G+ G +V++ T++ QIE+S+R+K+V IR +LSV E +
Sbjct: 1 MSSFVNLESLISERGANCRGADEIVNNETTRILTSQIEHSQRSKKVNIRNKLSVAECDAF 60
Query: 238 RKRFGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFP-EGEILDFGGSWLFHWKRG-S 411
R R+GGA+++ LT E+TAPHS A ALR E +C+D FP E +I+DFGGSWL H+ RG S
Sbjct: 61 RARYGGAFDVNLTHEYTAPHSLAGALRVAEHYDCIDSFPPEDKIIDFGGSWLHHYSRGDS 120
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
+VHSCCPIL RDA RH+ER+ + KMV+ +S ++ ++P +FC KAEDC VQ +AI
Sbjct: 121 RVHSCCPILGPRDATRHEERMCRLRKMVQ-TSDRFVDVP--DFCLNKAEDCNVQADWAIC 177
Query: 592 IHGGYDMGFQTLCSAMH---KHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSK----RN 750
IHGGYDMGFQ LC AMH + G +L+GT+MFD ML G + L C W +
Sbjct: 178 IHGGYDMGFQGLCKAMHAPLERG--ILQGTIMFDGAMLFDRQGELPLLQCRWQRVGTGSK 235
Query: 751 GIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGD 930
+ FDF +ESTLSY H +KN+ SFLT+ ++ IG T Y+LER ++ IM+YKI A +
Sbjct: 236 EQIKFDFINESTLSYVHDWKNLGSFLTESTYSIGGTTYLLERMLLKCSIMTYKIIATNVR 295
Query: 931 IPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKLDTVREVEEIAFRCFKDQK 1110
P +RHCIWF YL + + ++ W+ V+V TVREVEEI+FRCFK+ K
Sbjct: 296 CPPESLRHCIWFENISQYLAVQIPIGYNLND---WKTVRVARATVREVEEISFRCFKENK 352
Query: 1111 PWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVAFSLLLNCKRKFEELQCVY 1290
W EN+R +AS LSAKSST+I+NG S+M+GERLD +YH VAFSL LN +K+E+L+
Sbjct: 353 DWTENMRSVASILSAKSSTVIINGQSIMSGERLDVLEYHLVAFSLTLNLYQKYEKLRNFQ 412
Query: 1291 KKIVWQGWWNH--CTKWW------SESTRFQDFLATCFP--SLLDYYHSKVFVEKICECQ 1440
++ W+GW NH WW +E ++FLA P L Y S F+ KI E +
Sbjct: 413 GELEWKGWANHFKTRLWWCGRTVSTEGGFLRNFLADKIPWLKLNTYADSLDFITKISEVE 472
Query: 1441 VFESELEALSGSKSW----EDDAYSVXXXXXXXXXXXXSKTKEKLKE-KDIQDEKPDVEG 1605
FE + S +S+ E+ +K E KE D D +
Sbjct: 473 SFEVDSVPTSRLRSFFQKEENIVERAASEIMSANARRIAKKAEMSKEFDDFVDAPEEFAP 532
Query: 1606 GKPVHSQPNTHVVGDV--------SPKVVIKDTDSRPGRMELRAQAKDEFVAYTRKLHSN 1761
V NT V DV + + ++ D D+ L+ A +EF Y+++LH N
Sbjct: 533 EDVVEEVINTPVTQDVKLRQSKPETARSIVLDPDA-----VLKNGAINEFADYSKRLHEN 587
Query: 1762 AAANLARLWKLCGGSGSDNFVSTNCLNVLKLGDSLINFHKRSG-WIFETNETYQVGFNGN 1938
+NL LW L G G++ + + D ++N H +G W++ Y VG+N
Sbjct: 588 TVSNLRHLWTLMGCRGNE-IHNKSVAETYHRVDDMVNVHFPNGHWMYPLKYEYTVGYNDG 646
Query: 1939 GLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNA 2118
GLG K +E Y+VDKTC N +IA+ K + + V++DGVAGCGKTT+I + F
Sbjct: 647 GLGEKFENELYVVDKTCSCANAKAIADACKKVSAPTCSVVMVDGVAGCGKTTAIKETFRF 706
Query: 2119 ETDLIVTANRKSSEEIRDKLFKDSPD--LGKRFVRTADSVLMHDCITAPRILFDECGLLH 2292
E D+IVTANRKS+E++R +F D+ D + + VRTADS +MH R+L DE GLLH
Sbjct: 707 EKDIIVTANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLPECHRLLVDEAGLLH 766
Query: 2293 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCP 2460
+ FGD+EQISF +RD TF+MKY + D+ IV T+RCP
Sbjct: 767 YGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCP 822
>ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus]
gi|224492618|emb|CAT02556.1| 1a protein [Gayfeather mild
mottle virus]
Length = 988
Score = 584 bits (1505), Expect = e-164
Identities = 344/850 (40%), Positives = 473/850 (55%), Gaps = 52/850 (6%)
Frame = +1
Query: 67 SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 246
+FN+ +LV + G + + ALVD +A + ++Q+++ +R ++V+IR L V++ E IR R
Sbjct: 5 AFNINNLVASNGDKGLMANALVDKIAHEQLEEQLQHQRRGRKVYIRNVLDVKDSEIIRSR 64
Query: 247 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-----ILDFGGSWLFHWKRGS 411
+GG Y+L LTQ+ APH A ALR CETL+CLDFFP +LDFGGSW+ H+ RG
Sbjct: 65 YGGKYDLHLTQQEQAPHGLAGALRLCETLDCLDFFPNSGLRQDLVLDFGGSWVTHFLRGH 124
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
VH C P L RD RH ERL+ M K + K+ E PNFC A DC+V+ +AIS
Sbjct: 125 NVHCCSPCLGVRDKMRHTERLMTMRKAILNDPQKF-EGRQPNFCTSPAADCDVKAHFAIS 183
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKR-------- 747
IHGGYDMGFQ LC AMH HG +L+GTMMFD ML GFI DL C W K
Sbjct: 184 IHGGYDMGFQGLCQAMHAHGTTILKGTMMFDGAMLFDTEGFIPDLKCKWKKIKPFTFEKE 243
Query: 748 -------------------NGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYIL 870
N ++AFDF DESTLSY H ++NVKSFLTDQ++ Y +
Sbjct: 244 DQTSKVGKLNSVVFSAARVNTLIAFDFVDESTLSYVHEWENVKSFLTDQTYHYKGMTYGI 303
Query: 871 ERCTIEFGIMSYKITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKV 1050
ERC I+ GIM+YKI A G P IRHCIWFP +DY+ + + + + + W+ V++
Sbjct: 304 ERCLIQNGIMTYKIIATPGSCPPELIRHCIWFPSLKDYVGLKIPTSQDL---VEWKTVRL 360
Query: 1051 KLDTVREVEEIAFRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHY 1230
L T+RE EEIA RC+ D+K W E ++I LS+KSSTI++NGMSM +GER++ +DYHY
Sbjct: 361 PLSTLRETEEIAMRCYNDKKNWMEQFKVILGVLSSKSSTIVINGMSMQSGERVEISDYHY 420
Query: 1231 VAFSLLLNCKRKFEELQCVYKKIVWQGWWNH--CTKWWSESTR-FQDFLATCFPSL---L 1392
+ F++LL+ K K+E+L +Y WN K+++ TR + FL+ C +L L
Sbjct: 421 IGFAILLHTKMKYEQLGKMY------DMWNSGVIRKFFASLTRPLRVFLSGCVKTLFPTL 474
Query: 1393 DYYHSKVFVEKICECQVFESELEALSGSKSWE---DDAYSVXXXXXXXXXXXXSKTK--- 1554
K F+ K+ F +E+ + + W+ AY+ + K
Sbjct: 475 RPRDEKEFLVKLSTFVTF-NEVCQVDLNAEWDVVTAAAYTAEWAVEDGNTLAAERKKQAD 533
Query: 1555 EKLKEKDIQDEKPDVEGGKPVHSQPNTHVVGDVSPKVVIKDTDSRPGRMELRAQAKDEFV 1734
EK E I DE G + + T + + + + T S R+ RA A E+
Sbjct: 534 EKASEPVITDETEHQTSGDGLDASERTDLPDPM--QSLSTQTKSPETRIAQRATAMLEYT 591
Query: 1735 AYTRKLHSNAAANLARLWKLCGGSGSDNFVSTN---CLNVLKLGDSLINFHKRSG-WIFE 1902
AY +LH+N +NLAR+W GG N + N + D L+N H R+G W+
Sbjct: 592 AYETQLHNNTVSNLARIWCSAGGDNKTNSLEGNLHLVFDTYFAVDPLVNVHFRNGQWMRR 651
Query: 1903 TNE--TYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVA 2076
+ Y VG+N GLG K E YIV+ C++ N +A+ + S T L+DGVA
Sbjct: 652 VPDGIHYSVGYNETGLGQKMEGELYIVNADCVIANSQPLAQSTRGLLAPSGTISLVDGVA 711
Query: 2077 GCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFK--DSPDLGKRFVRTADSVLMHDCI 2250
GCGKTT+I FN TDLIVTAN+KS+ ++R LF DS + FVRTADSVL++D
Sbjct: 712 GCGKTTAIKKMFNPATDLIVTANKKSALDVRQALFNSTDSKE-ATTFVRTADSVLLNDAS 770
Query: 2251 TAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDES 2430
R+L DE LLHF FGDSEQI+F +RD +F M+ S+L DE
Sbjct: 771 DVSRVLIDEVVLLHFGQLCAVMAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPDEV 830
Query: 2431 TIVKHTYRCP 2460
+ T+R P
Sbjct: 831 SSADTTFRSP 840
>gb|AER35120.1| putative RNA helicase and methyltransferase [Cucumber mosaic virus]
Length = 990
Score = 583 bits (1502), Expect = e-163
Identities = 340/855 (39%), Positives = 475/855 (55%), Gaps = 57/855 (6%)
Frame = +1
Query: 67 SFNVRDLVDAEGSQAIGVKALVDSLATQMAQDQIEYSKRAKQVFIRQQLSVQEGEKIRKR 246
SFN+ +LV + G + + ALVD A + ++Q+++ +R ++V+IR L+V++ E IR R
Sbjct: 5 SFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGRKVYIRNVLNVKDSEVIRNR 64
Query: 247 FGGAYELKLTQEFTAPHSFAAALRQCETLECLDFFPEGE-----ILDFGGSWLFHWKRGS 411
+GG Y+L LTQ+ APH A ALR CETL+CLD FP +LDFGGSW+ H+ RG
Sbjct: 65 YGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGLRQDLVLDFGGSWVTHYLRGH 124
Query: 412 QVHSCCPILDARDAARHQERLVHMEKMVRRSSSKYCELPGPNFCCLKAEDCEVQCPYAIS 591
VH C P L RD RH ERL++M K++ ++ + P+FC A DCEVQ +AIS
Sbjct: 125 NVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQF-DGRQPDFCTHPAADCEVQAHFAIS 183
Query: 592 IHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGFISDLNCVWSKRNG------ 753
IHGGYDMGF+ LC AM+ HG +L+GTMMFD M+ + G I +LNC W K
Sbjct: 184 IHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQGVIPELNCQWRKIRSAFSETE 243
Query: 754 -------------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILER 876
+VAFDF +EST+SY HS++N+KSF+TDQ++ Y +ER
Sbjct: 244 DVTSLSGKIESTHVRKFKTMVAFDFINESTMSYVHSWENIKSFMTDQTYSYKGMTYGIER 303
Query: 877 CTIEFGIMSYKITAVSGDIPRTKIRHCIWFPRTRDYLHINVVDNSKVSHRLAWRKVKVKL 1056
C I GIM+YKI V G P IRHCIWFP +DY+ + + +S + + W+ V++
Sbjct: 304 CVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIKDYVGLKIPASSDL---VKWKTVRILT 360
Query: 1057 DTVREVEEIAFRCFKDQKPWEENLRLIASTLSAKSSTIIVNGMSMMAGERLDPTDYHYVA 1236
T+RE EEIA RC+ D+K W E ++I LSAKSSTI++NGMSM +GER+D DYHY+
Sbjct: 361 STLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSSTIVINGMSMQSGERIDIEDYHYIG 420
Query: 1237 FSLLLNCKRKFEELQCVY----KKIVWQGWWNHCTKWWSESTR-----FQDFLATCFPSL 1389
F++LL+ K K+E+L +Y I+W KW++ TR F + FP+L
Sbjct: 421 FAILLHTKMKYEQLGKMYDMWNASIIW--------KWFATLTRPLRVFFSGVVRVLFPTL 472
Query: 1390 LDYYHSKVFVEKICECQVFESELEALSGSKSWE--DDAYSVXXXXXXXXXXXXSKTKEKL 1563
K F+ K+ F E + G + W+ A V ++ EKL
Sbjct: 473 RP-REEKEFLIKLSTFVTFNGEC-SFDGGEEWDVISSAAFVAAQAVTDGKVLAAQKAEKL 530
Query: 1564 KEKDIQDEKPDVE-GGKPVHSQPNTHVVGDVSPK--------VVIKDTDSRPGRMELRAQ 1716
EK Q P +E G P S P + DV K + T S R+ RA
Sbjct: 531 AEKLAQ---PVIEVSGSPETSSPTSDDTDDVCGKEREVSELDSLSVQTRSPVTRVAERAT 587
Query: 1717 AKDEFVAYTRKLHSNAAANLARLWKLCGGSGSDNFVSTNCLNVLK---LGDSLINFHKRS 1887
A E+ AY ++LH +NL R+W + GG N + N V D ++N H +
Sbjct: 588 AMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKKNTLEGNLKFVFDTYFTVDPMVNVHFST 647
Query: 1888 G-WIFETNE--TYQVGFNGNGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFV 2058
G W+ E Y VGFN GLG KS E YIV+ C++ N S++ + T
Sbjct: 648 GRWMRPVPEGVVYSVGFNERGLGPKSEGELYIVNSECVVCNSESLSAITRSLQAPTGTIS 707
Query: 2059 LMDGVAGCGKTTSICDQFNAETDLIVTANRKSSEEIRDKLFKDSPDL-GKRFVRTADSVL 2235
+DGVAGCGKTT+I F+ TD+IVTAN+KS++++R LF+ S FVRTADSVL
Sbjct: 708 QVDGVAGCGKTTAIKSIFDPTTDMIVTANKKSAQDVRMALFQSSDSKEACTFVRTADSVL 767
Query: 2236 MHDCITAPRILFDECGLLHFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQL 2415
+++C T R+L DE LLHF FGDSEQI+F +RD +F M++S++
Sbjct: 768 LNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFSSRDASFDMRFSKI 827
Query: 2416 SVDESTIVKHTYRCP 2460
DE++ T+R P
Sbjct: 828 IPDETSDADTTFRSP 842