BLASTX nr result
ID: Rehmannia25_contig00003103
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00003103
(3895 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub... 1665 0.0
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub... 1653 0.0
gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlise... 1649 0.0
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 1436 0.0
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 1436 0.0
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 1341 0.0
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca... 1294 0.0
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub... 1293 0.0
gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus pe... 1292 0.0
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca... 1290 0.0
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th... 1290 0.0
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 1286 0.0
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus... 1282 0.0
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 1279 0.0
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1279 0.0
gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Th... 1279 0.0
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 1278 0.0
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub... 1268 0.0
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub... 1265 0.0
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me... 1247 0.0
>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
tuberosum]
Length = 1675
Score = 1665 bits (4313), Expect = 0.0
Identities = 845/1235 (68%), Positives = 1003/1235 (81%), Gaps = 14/1235 (1%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWN K+R AVINGPE HPGA ++ D ++TVKLP++KKMRVAI
Sbjct: 469 GIPPYFALRLTYPERLTPWNAVKMRDAVINGPENHPGAVSFADRIATVKLPSNKKMRVAI 528
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+TQSG N+E EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 529 SRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 588
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLI
Sbjct: 589 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLI 648
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIV AV+LTMKNTFLT EF+QLLYGSGVFA GP GN S KVS+VD EG+V+++L
Sbjct: 649 QDHIVGAVILTMKNTFLTLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSVVDFEGVVQTVL 708
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDC----YKNGEEDED 3006
P +WKP+PLWTGKQVITALLNH+T+G APCTV+N+GKIP YF + Y++ EE ED
Sbjct: 709 PAVWKPKPLWTGKQVITALLNHLTKGCAPCTVKNKGKIPYPYFLSESRLVEYQSREEQED 768
Query: 3005 QNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIH 2826
+ AE+ L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFTIFLQ+H
Sbjct: 769 RTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLH 828
Query: 2825 GFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQKVICSD 2646
GFTCGVDDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+K + S+
Sbjct: 829 GFTCGVDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAMSSN 888
Query: 2645 RESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNF 2466
+E+ATA+LDMKMKNKL NK GSQ K LL GLLKPFP+NCI++MT TGAKGSTVNF
Sbjct: 889 KEAATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNF 944
Query: 2465 QQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCM 2286
QQIS+YLGQQELEGKRVPRMVSGKTLPCFPPWD SRAGG+++DRFL+GLRPQEYYFHCM
Sbjct: 945 QQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCM 1004
Query: 2285 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQT 2106
AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVH+T
Sbjct: 1005 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRT 1064
Query: 2105 SFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSA 1926
SFLKNFKAL++N+ETICQK ++ R+ NSYIEKLP+GLEE+ + F E + K EK++G
Sbjct: 1065 SFLKNFKALKNNQETICQKLRHGRKLNSYIEKLPDGLEEKVKHF-WEKRTKKLEKKLGKL 1123
Query: 1925 IEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEP 1746
+++ K ++E+ F+ELV+QKY SSLA SGEPVGV+A QSVGEP
Sbjct: 1124 VKK-------------EEMVKQLKEEEADFLELVRQKYFSSLADSGEPVGVLAGQSVGEP 1170
Query: 1745 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVS 1566
STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPILTCPF W+SK++ SL++
Sbjct: 1171 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPILTCPFLGWQSKNDAQSLLA 1230
Query: 1565 RVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLKSVFLRE 1395
+VKK+TVAD++ESM+V+ LSI+ QV++ YKL +K+K +FV D TLK VFLRE
Sbjct: 1231 KVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRE 1290
Query: 1394 LEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRTQEAXXXXXXXXXXXXXDL 1215
LEDAIE+H+ LS+++GI+NF +SS S S+E +E+ S R +E DL
Sbjct: 1291 LEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRHEE-EMLDDEDEDERTEDL 1349
Query: 1214 GSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHSE 1035
SD QKRKQQ TDEM ED + ++D + +NG +EE +
Sbjct: 1350 SSDAQKRKQQTTDEMDYDDDENEDEAETTAEIEDEKSEQTD-----EIDNGDEEEIGNRG 1404
Query: 1034 DNDGAS---NADEVMSEAKSSGRKGRATSERIEMPKEDSKKIR----RGISMEVKGLSFE 876
+ + S + ++ +S KSS K + T ++ K+ ++ + R + ++V+GL FE
Sbjct: 1405 NEEQMSKLQSTEDDISNTKSSKSKTK-TKTTVKQNKKKERRSKKDSDRCVFVDVEGLHFE 1463
Query: 875 VDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDA 696
V FRF EPH+LLAQ+AQKTAKKVYIK SGKI QC+MV+Y+ E TV+WD+ + +
Sbjct: 1464 VHFRFVNEPHILLAQVAQKTAKKVYIKNSGKIDQCRMVKYEVTENTVMWDEYQTKQQ--- 1520
Query: 695 EKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQ 516
+ D++YWA+KA+GVDF +FWEM DDLD++R+Y+NNI AMLNTYGVEAARA+I+REVK
Sbjct: 1521 SQDSDSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKT 1580
Query: 515 VFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAAT 336
VF IYGV+IDFRHLSLIAD+MTHTGGY+PMSRHGSISESLSPFLKMSFETASKFIVEAA
Sbjct: 1581 VFGIYGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAA 1640
Query: 335 HGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
HGLTDNLETPSSRICLGLPVKMGTGCF++MQKLD+
Sbjct: 1641 HGLTDNLETPSSRICLGLPVKMGTGCFDIMQKLDI 1675
>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
lycopersicum]
Length = 1677
Score = 1653 bits (4281), Expect = 0.0
Identities = 836/1231 (67%), Positives = 995/1231 (80%), Gaps = 10/1231 (0%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P A R TYPER TPWN K+R AVINGPE HPGA ++ D ++TVKLP++KKMRVAI
Sbjct: 469 GIPPYFASRLTYPERLTPWNAVKMRDAVINGPENHPGAISFADRIATVKLPSNKKMRVAI 528
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+TQSG N+E EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 529 SRKLPSSRGAVTQSGRNNEYEFEGKVVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 588
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNANEQYIVPT+GDTVRGLI
Sbjct: 589 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLI 648
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIV AV+LTMKNTFL+ EF+QLLYGSGVFA GP GN S KVS+VD EG+V+++L
Sbjct: 649 QDHIVGAVILTMKNTFLSLHEFNQLLYGSGVFAAGPAPTSGNHSNKVSIVDFEGVVQTVL 708
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDC----YKNGEEDED 3006
P +WKP+PLWTGKQVITALLNH+T G PCTV+N+GKIP YF + Y++ EE ED
Sbjct: 709 PAVWKPKPLWTGKQVITALLNHLTNGCPPCTVKNKGKIPYAYFLSESRLVEYQSREEQED 768
Query: 3005 QNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIH 2826
+ AE+ L+WKNELVRGVIDKAQFGKFGLVHT+QELYGSN AGILLSALSRLFTIFLQ+H
Sbjct: 769 RTAENEFLIWKNELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLH 828
Query: 2825 GFTCGVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQKVICSD 2646
GFTCG+DDL+ILPHYD +RK++LEG+DVGEE HC+FVKFK G+IGP ELQLEI+K I S+
Sbjct: 829 GFTCGIDDLVILPHYDIRRKEELEGDDVGEEAHCDFVKFKRGEIGPLELQLEIEKAISSN 888
Query: 2645 RESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNF 2466
+E ATA+LDMKMKNKL NK GSQ K LL GLLKPFP+NCI++MT TGAKGSTVNF
Sbjct: 889 KEVATAALDMKMKNKLANK----GSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNF 944
Query: 2465 QQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCM 2286
QQIS+YLGQQELEGKRVPRMVSGKTLPCFP WD SRAGG+++DRFL+GLRPQEYYFHCM
Sbjct: 945 QQISSYLGQQELEGKRVPRMVSGKTLPCFPAWDCASRAGGYVSDRFLSGLRPQEYYFHCM 1004
Query: 2285 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQT 2106
AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVH+T
Sbjct: 1005 AGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRT 1064
Query: 2105 SFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSA 1926
SFLKNFKAL++N+ETICQK ++ + NSYIEKLP+GL E+ + F E + K EK++G
Sbjct: 1065 SFLKNFKALKNNQETICQKLRHGCKLNSYIEKLPDGLGEKVKHF-WESKTKKLEKKLGML 1123
Query: 1925 IEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEP 1746
+++ K ++E+ F+ELV QKY SSLA SGEPVGV+A QSVGEP
Sbjct: 1124 VKK-------------EEMVKQLKEEEADFLELVGQKYFSSLADSGEPVGVLAGQSVGEP 1170
Query: 1745 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVS 1566
STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS+ IKTPI+TCPF W+SK++ SL++
Sbjct: 1171 STQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASEAIKTPIMTCPFLGWKSKNDAQSLLA 1230
Query: 1565 RVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLKSVFLRE 1395
+VKK+TVAD++ESM+V+ LSI+ QV++ YKL +K+K +FV D TLK VFLRE
Sbjct: 1231 KVKKITVADMIESMEVKLLPLSIYNHQVSQLYKLTVKLKKHDFVSSEDCEYTLKFVFLRE 1290
Query: 1394 LEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGV-RTQEAXXXXXXXXXXXXXD 1218
LEDAIE+H+ LS+++GI+NF +SS S S+E +E+ S R +E D
Sbjct: 1291 LEDAIESHLALLSKINGIQNFKTSSESVDSDETEENASSTRREEEMLDDDDDDEDERTED 1350
Query: 1217 LGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHS 1038
L SD QKRKQQ TDEM +E ++ D +++ + ++ + +
Sbjct: 1351 LSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGDEEENGDRGNE 1410
Query: 1037 EDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKK-IRRGISMEVKGLSFEVDFRF 861
E + +E +S K+S K + T ++ + + SKK R + ++V+GL FEV FRF
Sbjct: 1411 EHTSKLQSTEEDISNTKTSKSKTKTTVKQKKKKERRSKKDSDRCVFVDVEGLHFEVHFRF 1470
Query: 860 TTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQD- 684
EPH+LLAQ+AQKTAKKVY+K SGKI QC+MV+Y+ E TV+WD+ N+ ++QD
Sbjct: 1471 VNEPHILLAQVAQKTAKKVYVKNSGKIDQCRMVKYEVTENTVMWDE----NQTKQQRQDS 1526
Query: 683 DTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDI 504
D++YWA+KA+GVDF +FWEM DDLD++R+Y+NNI AMLNTYGVEAARA+I+REVK VF I
Sbjct: 1527 DSAYWALKAAGVDFGTFWEMQDDLDVTRIYTNNIRAMLNTYGVEAARASILREVKTVFGI 1586
Query: 503 YGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLT 324
YGV+IDFRHLSLIAD+MTHTGGY+PMSRHGSISESLSPFLKMSFETASKFIVEAA HGLT
Sbjct: 1587 YGVEIDFRHLSLIADFMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIVEAAAHGLT 1646
Query: 323 DNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
DNLETPSSRICLGLPVKMGTGCF++MQ+LD+
Sbjct: 1647 DNLETPSSRICLGLPVKMGTGCFDIMQELDI 1677
>gb|EPS74252.1| hypothetical protein M569_00497, partial [Genlisea aurea]
Length = 1626
Score = 1649 bits (4269), Expect = 0.0
Identities = 854/1228 (69%), Positives = 982/1228 (79%), Gaps = 12/1228 (0%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWN KLR AV+NGP+IHPGATTY+DSV+T+KLP +KK RVA+
Sbjct: 432 GIPPYFALRLTYPERVTPWNATKLRNAVVNGPDIHPGATTYIDSVATMKLPLNKKARVAL 491
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA + G + +L+FEGK+VYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 492 SRKLPSSRGATAEVGES-QLDFEGKVVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 550
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
E+TLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI
Sbjct: 551 ERTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 610
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIV+AVLLT+K TFLT SEF+QLLYGSGVFA G S N S+KVS +GL+ +L
Sbjct: 611 QDHIVAAVLLTLKRTFLTCSEFNQLLYGSGVFALGRHSYVSNSSQKVSGHAPDGLINPIL 670
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNAE 2994
P IWKPEPLWTGKQVI+ALLNHITRG APC V+NQ K+P YFT D +EDEDQNAE
Sbjct: 671 PAIWKPEPLWTGKQVISALLNHITRGFAPCIVKNQTKLPSTYFT-DNPAMEDEDEDQNAE 729
Query: 2993 HNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTC 2814
+N LVWKNELVRGVIDKAQFGKFGLVHTVQELYGS SAG LL+A SRLFT+FLQIHGFTC
Sbjct: 730 NNFLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSESAGNLLTAFSRLFTMFLQIHGFTC 789
Query: 2813 GVDDLIILPHYDAQRKDKLEGEDVGEEVHCEFVKFKPGQIGPEELQLEIQKVICSDRESA 2634
GVDDL+ILP YD +RK+KLE EDVGEEVHC+F+ FKPGQIG EELQLEI+K IC DRESA
Sbjct: 790 GVDDLMILPDYDVKRKEKLEQEDVGEEVHCDFINFKPGQIGREELQLEIEKAICRDRESA 849
Query: 2633 TASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQIS 2454
TA LDMKMKNKLT KLT EGSQ+LKHLLT GLLKPFP+NCISVMTTTGAKGSTVNFQQIS
Sbjct: 850 TALLDMKMKNKLTMKLTTEGSQVLKHLLTDGLLKPFPQNCISVMTTTGAKGSTVNFQQIS 909
Query: 2453 AYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGRE 2274
AYLGQQELEGKRVPRMVSGKTLP FPPWDF SRAGGFITDRFL+GLRPQEYYFHCMAGRE
Sbjct: 910 AYLGQQELEGKRVPRMVSGKTLPSFPPWDFASRAGGFITDRFLSGLRPQEYYFHCMAGRE 969
Query: 2273 GLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLK 2094
GLVDTAVKTSRSGYLQRCL+KNLESLKV YDYTVRDADGSIIQF YGEDGVD H+TSFLK
Sbjct: 970 GLVDTAVKTSRSGYLQRCLVKNLESLKVGYDYTVRDADGSIIQFCYGEDGVDAHKTSFLK 1029
Query: 2093 NFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQL 1914
NFKAL +N+ETI QKFQN+ QFN YI+KLPEGLEEEA FIQ+ Q S KQ+
Sbjct: 1030 NFKALSNNQETIQQKFQNKHQFNFYIKKLPEGLEEEAMHFIQKAQTLSSVKQV------- 1082
Query: 1913 HKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQM 1734
+ +KF+ +V+QK+LSSL +GEPVGVIAAQS+GEPSTQM
Sbjct: 1083 --------------------VDHHKFMRVVEQKFLSSLVPAGEPVGVIAAQSIGEPSTQM 1122
Query: 1733 TLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKK 1554
TLNTFHLAGRGEMNVTLGIPRLQEILMTAS+VI+TP+LTCPF Q +SK +S++S +KK
Sbjct: 1123 TLNTFHLAGRGEMNVTLGIPRLQEILMTASEVIRTPMLTCPFLQRQSKPNALSVISNLKK 1182
Query: 1553 VTVADLVESMDVQLSIHPRQVARTYKLIIKVKDTEFVPLADIHDTLKSVFLRELEDAIEN 1374
+T+ADL+ESMDV +S HP+ V R YKL +++KDTEFV L D + TLK+ FL+ELEDA+EN
Sbjct: 1183 ITIADLIESMDVSISFHPK-VGRIYKLRMRLKDTEFVSLEDTYKTLKTSFLKELEDALEN 1241
Query: 1373 HVIFLSRVSGIKNFMSSSISEVSNEADED--DSGVRTQEAXXXXXXXXXXXXXDLGSDVQ 1200
HV+FL +V+ I +F S S E +E +ED G + E DL SDVQ
Sbjct: 1242 HVVFLKKVAVINDFASHSRFEALSEGEEDKASDGAQEAEEEGDDDGGDSDAGEDLDSDVQ 1301
Query: 1199 KRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENGKDEEAEHSEDNDGA 1020
KR+QQA D+M ED +K ++ D +D ++ + +D D
Sbjct: 1302 KRRQQARDDMDYEDASDSEQREE---EEDLDKANAEEDDDDDENEWNEKCDDDHDDYDQR 1358
Query: 1019 SNADEVMSEAKSSGRK---GRATSERIEMPKEDS--KKIRRGISMEVKGLSFEVDFRFTT 855
S+ ++ + GRK TSE+I++ S K+ R I ME++GLS EV F+FT+
Sbjct: 1359 SSEKNMVEKPILKGRKKSVAAITSEKIDLSTMPSTGKRENRAIYMEIEGLSLEVHFKFTS 1418
Query: 854 EPHLLLAQIAQKTAKKVYIKRS-GKISQCKMVQYDPDEKTVIWDD---KKKPNRGDAEKQ 687
EPH+LLAQ+ QKTAKKVY+K++ GK++QCK+VQYDPDEKTVIWDD K+K + +
Sbjct: 1419 EPHVLLAQVVQKTAKKVYVKKTGGKLNQCKLVQYDPDEKTVIWDDDKKKEKATKNGRKAD 1478
Query: 686 DDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFD 507
DD +YWAVKASG D +SFWEM D LDL+RLY NNI++ML TYGVEAA ATIIRE+K VFD
Sbjct: 1479 DDAAYWAVKASGSDVESFWEMSDYLDLNRLYCNNIHSMLKTYGVEAASATIIREMKNVFD 1538
Query: 506 IYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGL 327
IYGVKID+RHLSLI D+M H GGYRPMSRHGSI +S+SPFLKMSFETASKFIVEAA +GL
Sbjct: 1539 IYGVKIDYRHLSLIGDHMAHAGGYRPMSRHGSIPDSVSPFLKMSFETASKFIVEAAIYGL 1598
Query: 326 TDNLETPSSRICLGLPVKMGT-GCFELM 246
D+LE+PSSRICLGLPV++GT G F+LM
Sbjct: 1599 RDDLESPSSRICLGLPVRVGTGGPFDLM 1626
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 1436 bits (3716), Expect = 0.0
Identities = 756/1261 (59%), Positives = 927/1261 (73%), Gaps = 40/1261 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPE+ TPWNV KLR A+INGPEIHPGAT YVD +STVKL +KKMR++I
Sbjct: 462 GIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISI 521
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRG + Q G + + EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 522 SRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 581
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLI
Sbjct: 582 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLI 641
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT K+TFLTR +++QLLY SG+ + G GS G +KVS++DSE ++ LL
Sbjct: 642 QDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLL 700
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF--------------TGD 3036
P IWKPEPLW+GKQVITA+LNHITRGR P T E GKIP+ YF G
Sbjct: 701 PAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGS 760
Query: 3035 CYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALS 2856
+ + E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGILLS LS
Sbjct: 761 DRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLS 820
Query: 2855 RLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQIGPEEL 2679
RLFT+FLQ+HGFTCGVDDL+I P+YD RK +L+ E++GE VHC+F+ G+I P +L
Sbjct: 821 RLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKL 880
Query: 2678 QLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMT 2499
Q+E++K+I S+ E+A LD MKN+L N+LT S++ K LL GL+KPFPKNC+S+MT
Sbjct: 881 QVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMT 936
Query: 2498 TTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTG 2319
TTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD +RAGGFI+DRFLTG
Sbjct: 937 TTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTG 996
Query: 2318 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFY 2139
L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGSI+QF
Sbjct: 997 LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFN 1056
Query: 2138 YGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQ 1959
YG+DGVDVHQTSF+ F+AL N E +C+KF +FN YI+KLP+ L ++ ++FI+
Sbjct: 1057 YGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFM 1116
Query: 1958 DKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPV 1779
++ ++ K+Q F+ LVKQKY+SSLAQ GEPV
Sbjct: 1117 EERQDFD--------------------------NMKKQKDFVNLVKQKYISSLAQPGEPV 1150
Query: 1778 GVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQW 1599
GV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TCP
Sbjct: 1151 GVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMG 1210
Query: 1598 RSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFVP---- 1440
RSK + L +++KKVTVAD+ ESM+V + ++ Q YKL +K+ + P
Sbjct: 1211 RSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTG 1270
Query: 1439 --LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS--GVR 1272
L D +TL++VF+RELEDAI+NH++ LS++SGIKNF+ S S S E DED S G+
Sbjct: 1271 ISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLA 1330
Query: 1271 TQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSD 1092
DLG D QKRKQQA+DEM + G S+
Sbjct: 1331 GGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEM--------------------DYGDSE 1370
Query: 1091 GDHLE-DTENGKDEEAEHSEDNDGASNADE------------VMSEAKSS-GRKGRATSE 954
G+ E + G EE + ED SN +E V S++KSS +K + ++
Sbjct: 1371 GEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAK 1430
Query: 953 RIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQ 774
R + + K R I ++ KG FEV FRFT EPH+LLAQIAQK A KVYI+ SGKI
Sbjct: 1431 RKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDL 1490
Query: 773 CKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLY 594
C+++ + D+ D KK R + ++ A++ +GVDF +FW+M D+LD+ +Y
Sbjct: 1491 CQVIDCNKDQVIYYGRDPKK--RENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVY 1548
Query: 593 SNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHG 414
SNN++AMLNT+GVEAARATII+EV VF+ YGVK++ RHLSLIAD+MTH+GGYRPM+RHG
Sbjct: 1549 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1608
Query: 413 SISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLD 234
I+ES+SPF KM+FETASKFIVEAA+HG+TDNLE+ S+RICLGLPVKMGTGCF+LMQK++
Sbjct: 1609 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1668
Query: 233 V 231
+
Sbjct: 1669 I 1669
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 1436 bits (3716), Expect = 0.0
Identities = 756/1261 (59%), Positives = 927/1261 (73%), Gaps = 40/1261 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPE+ TPWNV KLR A+INGPEIHPGAT YVD +STVKL +KKMR++I
Sbjct: 533 GIPPYFALRLTYPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISI 592
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRG + Q G + + EFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 593 SRKLPSSRGVVAQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 652
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QYIVP+RGD +RGLI
Sbjct: 653 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLI 712
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT K+TFLTR +++QLLY SG+ + G GS G +KVS++DSE ++ LL
Sbjct: 713 QDHIVSAVLLTKKDTFLTREQYNQLLYSSGL-SSGSGSFIGKPGKKVSVLDSEDEMQPLL 771
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF--------------TGD 3036
P IWKPEPLW+GKQVITA+LNHITRGR P T E GKIP+ YF G
Sbjct: 772 PAIWKPEPLWSGKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGS 831
Query: 3035 CYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALS 2856
+ + E ++ E+ LL+ KNELVRGVIDKAQF K+GLVH VQELYGSN+AGILLS LS
Sbjct: 832 DRRKEKRIEKKHGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLS 891
Query: 2855 RLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQIGPEEL 2679
RLFT+FLQ+HGFTCGVDDL+I P+YD RK +L+ E++GE VHC+F+ G+I P +L
Sbjct: 892 RLFTVFLQMHGFTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHGKIDPVKL 951
Query: 2678 QLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMT 2499
Q+E++K+I S+ E+A LD MKN+L N+LT S++ K LL GL+KPFPKNC+S+MT
Sbjct: 952 QVEVEKIILSNGEAAITRLDRMMKNEL-NELT---SKVNKDLLLKGLVKPFPKNCLSLMT 1007
Query: 2498 TTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTG 2319
TTGAKGSTVNF QIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD +RAGGFI+DRFLTG
Sbjct: 1008 TTGAKGSTVNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTG 1067
Query: 2318 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFY 2139
L PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKVCYDYTVRD+DGSI+QF
Sbjct: 1068 LHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFN 1127
Query: 2138 YGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEKLPEGLEEEARRFIQEVQ 1959
YG+DGVDVHQTSF+ F+AL N E +C+KF +FN YI+KLP+ L ++ ++FI+
Sbjct: 1128 YGDDGVDVHQTSFITEFEALAVNEEVVCEKFGQDGKFNGYIQKLPKELRKKTKKFIEGFM 1187
Query: 1958 DKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPV 1779
++ ++ K+Q F+ LVKQKY+SSLAQ GEPV
Sbjct: 1188 EERQDFD--------------------------NMKKQKDFVNLVKQKYISSLAQPGEPV 1221
Query: 1778 GVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQW 1599
GV+AAQSVGEPSTQMTLNTFHLAGRGE+NVTLGIPRLQEILMTA++ IKTPI+TCP
Sbjct: 1222 GVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQEILMTAANDIKTPIMTCPLQMG 1281
Query: 1598 RSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFVP---- 1440
RSK + L +++KKVTVAD+ ESM+V + ++ Q YKL +K+ + P
Sbjct: 1282 RSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTG 1341
Query: 1439 --LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS--GVR 1272
L D +TL++VF+RELEDAI+NH++ LS++SGIKNF+ S S S E DED S G+
Sbjct: 1342 ISLEDCEETLEAVFVRELEDAIQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLA 1401
Query: 1271 TQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSD 1092
DLG D QKRKQQA+DEM + G S+
Sbjct: 1402 GGNGDEDDDGEDDGGAEDLGLDAQKRKQQASDEM--------------------DYGDSE 1441
Query: 1091 GDHLE-DTENGKDEEAEHSEDNDGASNADE------------VMSEAKSS-GRKGRATSE 954
G+ E + G EE + ED SN +E V S++KSS +K + ++
Sbjct: 1442 GEPDEGEPSAGLTEEIDLVEDEVEISNNEEVGISDPKDEDSKVPSKSKSSKNKKAKTEAK 1501
Query: 953 RIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQ 774
R + + K R I ++ KG FEV FRFT EPH+LLAQIAQK A KVYI+ SGKI
Sbjct: 1502 RKKRFRAIKKDFDRAILVKAKGTYFEVHFRFTNEPHILLAQIAQKAANKVYIRSSGKIDL 1561
Query: 773 CKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLY 594
C+++ + D+ D KK R + ++ A++ +GVDF +FW+M D+LD+ +Y
Sbjct: 1562 CQVIDCNKDQVIYYGRDPKK--RENIPGEEKKKLPALQTAGVDFTAFWKMQDELDVRYVY 1619
Query: 593 SNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHG 414
SNN++AMLNT+GVEAARATII+EV VF+ YGVK++ RHLSLIAD+MTH+GGYRPM+RHG
Sbjct: 1620 SNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFMTHSGGYRPMNRHG 1679
Query: 413 SISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLD 234
I+ES+SPF KM+FETASKFIVEAA+HG+TDNLE+ S+RICLGLPVKMGTGCF+LMQK++
Sbjct: 1680 GIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVKMGTGCFDLMQKIE 1739
Query: 233 V 231
+
Sbjct: 1740 I 1740
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 1341 bits (3471), Expect = 0.0
Identities = 734/1257 (58%), Positives = 885/1257 (70%), Gaps = 36/1257 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P A++ TYPER TPWN+ KLR AVING E HPGAT YVD +S KLP ++K R++I
Sbjct: 461 GIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECHPGATHYVDKLSINKLPPARKARISI 520
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+TQ+G E EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 521 SRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 580
Query: 3533 EKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGL 3357
EKTLRMHYANCS +YNADFDGDE+NVHFPQDE+SRAEAYNIVNAN Q++ P+ G+ +RGL
Sbjct: 581 EKTLRMHYANCSITYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQFVRPSNGEPLRGL 640
Query: 3356 IQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESL 3177
IQDHIVSAVLLT K+TFL++ EF+QLLY SGV GP S G +KV SE +++L
Sbjct: 641 IQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGVSTVGPNSFHGRPGQKVLWSRSEDEIQTL 700
Query: 3176 LPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNG---EEDED 3006
P IWKP+PLWTGKQVITA+LNHIT P TVE KIP N+F ++ EE D
Sbjct: 701 PPAIWKPKPLWTGKQVITAILNHITSDHPPFTVEKDAKIPSNFFKSRANEDKPCQEEKSD 760
Query: 3005 QNA-------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLF 2847
++A E +LV+KNELVRGVIDK QFG++GLVHTV EL GS++AGILLS LSRLF
Sbjct: 761 KDAPAEKEPDEEKMLVYKNELVRGVIDKGQFGEYGLVHTVHELLGSHTAGILLSVLSRLF 820
Query: 2846 TIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQI--GPEELQ 2676
T +LQ+HGFTCGVDDL+IL + D +RK +LE E GE VH F+ K +I P +Q
Sbjct: 821 TAYLQMHGFTCGVDDLLILTNKDEERKKQLEWCEKSGEAVHRNFIGIKDEKIKIDPVAMQ 880
Query: 2675 LEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTT 2496
L I+K I SD +SA A LD +M N+L T+ S ++ +LL+ GLLKP KNCIS+MTT
Sbjct: 881 LNIEKTIRSDGDSALAYLDRQMSNELN---TKTSSGVISNLLSDGLLKPSGKNCISLMTT 937
Query: 2495 TGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGL 2316
+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +R+GG+ITDRFLTGL
Sbjct: 938 SGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGL 997
Query: 2315 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYY 2136
RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADGS++QFYY
Sbjct: 998 RPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYY 1057
Query: 2135 GEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFIQEVQ 1959
GEDGVDVHQTSF+ FK L N++ I ++ Q FNSYI +LPE L+E+A RF+ +
Sbjct: 1058 GEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLGAFNSYISELPEALKEKADRFLDDF- 1116
Query: 1958 DKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPV 1779
GR +L +E L+KQK+L SLAQ GEPV
Sbjct: 1117 -----------------SIMGRIASNLVKRE--------DLYNLMKQKFLLSLAQPGEPV 1151
Query: 1778 GVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQW 1599
GV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS IKTPI+TCP +
Sbjct: 1152 GVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEG 1211
Query: 1598 RSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTEFVP---- 1440
R+ + L +++KVTVAD+VESM+V + +I V R YKL +K+ P
Sbjct: 1212 RTNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYAN 1271
Query: 1439 --LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSG--VR 1272
+ D +TL+ VFLRELEDAI+NH+ LSR+SGIK+F+ S S S EADED +G
Sbjct: 1272 ISVEDWEETLEVVFLRELEDAIQNHMFLLSRISGIKDFLPESRSRASGEADEDVAGDMSH 1331
Query: 1271 TQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKG--- 1101
+E DLG D QKRK QATDEM + + E G
Sbjct: 1332 REERDDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFES 1391
Query: 1100 -KSDGDHLEDTENGKDEEAEHSED----NDGASNADEVMSEAKSSGRKGRATSERIEMPK 936
GD+ + N + E SE + + +E+ S G K + ++ + +
Sbjct: 1392 EIDQGDNETEISNDVMLDNEASETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKR 1451
Query: 935 ED--SKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMV 762
+ SK R I +E + + FEV F+FT EPH+LLA+IAQKTAKKVYI+ GKI QC++
Sbjct: 1452 KSRISKDFDRAIFVEARKMHFEVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVT 1511
Query: 761 QYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNI 582
D E VI+ K R D + A+ A+GVDF +FW+M D LD+ +YSNNI
Sbjct: 1512 --DCKESQVIYYGKDPKERVDLKPDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNI 1569
Query: 581 NAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISE 402
+AML TYGVEAAR TIIRE+ VF YG+ + RHLSLIAD+MTHTGGYRPMSR G I+E
Sbjct: 1570 HAMLKTYGVEAARETIIREINHVFKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAE 1629
Query: 401 SLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
S+SPF KMSFETASKFIVEAA HG DNLETPS+RICLGLPVKMGTG F+LMQKL++
Sbjct: 1630 SISPFSKMSFETASKFIVEAALHGEIDNLETPSARICLGLPVKMGTGSFDLMQKLEI 1686
>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
Length = 1400
Score = 1294 bits (3349), Expect = 0.0
Identities = 707/1268 (55%), Positives = 885/1268 (69%), Gaps = 47/1268 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR A+ING E HPGAT YVD +ST +LP S+K R++I
Sbjct: 177 GIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISI 236
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 237 SRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 296
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LI
Sbjct: 297 EKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALI 356
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT ++TFL+R EF+QLLY SGV + S G +KV + SE + ++
Sbjct: 357 QDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPII 416
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNA- 2997
P I KP+PLWTGKQVI+++L+HITRGR P TV KIP+++F KN + ++N
Sbjct: 417 PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQP 476
Query: 2996 -------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGI 2874
E +L+++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI
Sbjct: 477 KNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGI 536
Query: 2873 LLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFK-PG 2700
LLS SRLFT+FLQ+HGFTCGVDDL+I+ D +RK +LE E E H E K
Sbjct: 537 LLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNS 596
Query: 2699 QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPK 2520
+ P ELQLEI++ I D E+A +LD KM + L N+ + +G +L LL+ GL+K +
Sbjct: 597 ETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGE 653
Query: 2519 NCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFI 2340
NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI
Sbjct: 654 NCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFI 713
Query: 2339 TDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDAD 2160
+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDAD
Sbjct: 714 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDAD 773
Query: 2159 GSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEEA 1983
GSI+QF YGEDG+DVHQTSF+ F+AL N++ + +K +Q +K LP+GL +A
Sbjct: 774 GSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKA 833
Query: 1982 RRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSS 1803
+FI+E K + ++I + F+ L+K K+LSS
Sbjct: 834 EQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLSS 865
Query: 1802 LAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPI 1623
LAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS I+TP+
Sbjct: 866 LAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPV 925
Query: 1622 LTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII----- 1467
+TCP + ++K + + L +++KK+TVAD++ESM+V + ++ + YKL +
Sbjct: 926 MTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKP 985
Query: 1466 -KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADE 1290
K + + + D LK VFLRELEDAI+NH++ LS++SGIK FM S SNE DE
Sbjct: 986 DKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDE 1045
Query: 1289 DDSGVRTQEA-----XXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXE 1125
D S R++E DLG D QK+KQQ TDEM
Sbjct: 1046 DVSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGAS 1105
Query: 1124 LSE-DGEKGKSDGD------HLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGR 966
L+ + E S+ + ++ ++NGKDE ++ S + + SN S + +G + +
Sbjct: 1106 LAALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSREEKTGSEPK 1162
Query: 965 ATSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSG 786
+ + +++S R I ++GL FEV F+ EPH+LLAQIA+KTAKKVYI+ G
Sbjct: 1163 RKKMKAKFVRKESD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFG 1219
Query: 785 KISQCKMVQYDPDEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDD 615
KI QC++ D E V + D KK+ + D EK A+ +GVDF +FW+M D
Sbjct: 1220 KIDQCRVT--DCSENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFGAFWKMEDH 1272
Query: 614 LDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGY 435
+D+ LYSN+I+AMLNTYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G Y
Sbjct: 1273 IDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRY 1332
Query: 434 RPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCF 255
RPMSR G I+ES+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTG F
Sbjct: 1333 RPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSF 1392
Query: 254 ELMQKLDV 231
+LMQK+++
Sbjct: 1393 DLMQKVEI 1400
>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1651
Score = 1293 bits (3347), Expect = 0.0
Identities = 710/1265 (56%), Positives = 865/1265 (68%), Gaps = 44/1265 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR +YPER TPWNV KLR A++NGPE HPGAT Y D VS VKLP K+
Sbjct: 451 GIPPYFALRLSYPERVTPWNVVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLT 510
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLP+SRG + G + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAH+VRVLKG
Sbjct: 511 SRKLPTSRGVILHQGKISDHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKG 570
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LI
Sbjct: 571 EKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALI 630
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL+ EF+QLLY SGV G GS G +KV + +SE +
Sbjct: 631 QDHIVSAALLTKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFP 690
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNA- 2997
P IWKPEPLWTGKQVI+ALL +ITRG P T E KIP N+F K ED +
Sbjct: 691 PAIWKPEPLWTGKQVISALLYYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKK 750
Query: 2996 -----EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQ 2832
E LL++KN+LVRGV+DKAQFG +G++HTVQELYGSN AG LLSALSRLFT FLQ
Sbjct: 751 KDKPDEDKLLIYKNDLVRGVVDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQ 810
Query: 2831 IHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFK-PGQIGPEELQLEIQKV 2658
+HGFTCGVDDL++ D +R ++L+ E +G+ VH EF+ K I P LQL I+K
Sbjct: 811 MHGFTCGVDDLMLTEGKDVERMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIEKK 870
Query: 2657 ICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGS 2478
I S+ E+A +LD KM + L +R S ILK LL+ G+LKP KNCIS+MTT+GAKGS
Sbjct: 871 IRSNGEAA-LTLDRKMTSNLN---SRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGS 926
Query: 2477 TVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYY 2298
VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFPPWD + RAGGFI DRFLT L PQEYY
Sbjct: 927 MVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYY 986
Query: 2297 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVD 2118
FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGEDGVD
Sbjct: 987 FHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVD 1046
Query: 2117 VHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEK 1941
VHQTSF+ F AL N+E + + Q +S YI KLPE LE +A +F SK++
Sbjct: 1047 VHQTSFITEFGALSTNKELVFSNYCRQLDRSSPYINKLPEALEGKAEKF-------SKQR 1099
Query: 1940 QIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQ 1761
+GS EQ F+ L++ KY+S LAQ GEPVGV+A+Q
Sbjct: 1100 NLGS-------------------------MEQADFLRLMEHKYVSCLAQPGEPVGVLASQ 1134
Query: 1760 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEV 1581
SVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+ IKTP +TCP +S +
Sbjct: 1135 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCPLRHDKSMKDA 1194
Query: 1580 VSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADI 1428
+ L ++KK+TVAD+++SM V +++ QV YKL++K+ ++ P L D
Sbjct: 1195 ICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYPEYTDITLDDW 1254
Query: 1427 HDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEA---------------- 1296
+TL+ F+RELEDAI+NH+ LS++SGIK F + S SN +
Sbjct: 1255 EETLRVNFVRELEDAIQNHMTLLSKISGIKKFKTDPQSNYSNSSEDAHSNGSESEKKGQN 1314
Query: 1295 ----DEDDSGVRTQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXX 1128
DED GV E DLGSD QKRK Q TDE+
Sbjct: 1315 NDDDDEDGGGVEDTEG-----------YEDLGSDAQKRKLQGTDEVDY------------ 1351
Query: 1127 ELSEDG-EKGKSDG---DHLEDTENGKDEEAEHSEDN-DGASNADEVMSEAKSSGRKGRA 963
EDG E+ DG + +E E+G D +A + +N A+N++ + +KS +
Sbjct: 1352 ---EDGPEEETHDGELSEEIEGDEDGSDVDANENYNNVTDANNSEGLEKPSKSKTIDEKQ 1408
Query: 962 TSERIEMPKE-DSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSG 786
+R + E +KK R I +E KG FE+ FRFT EPH+LL QIAQ+TAKKV I+ G
Sbjct: 1409 NLKREKKKSEPTTKKYDRAIFVEAKGKHFEIHFRFTGEPHILLTQIAQRTAKKVCIQNFG 1468
Query: 785 KISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDL 606
K+ +CK + E VI+ K R + + A++ SGV FK+FWE+ DDLD+
Sbjct: 1469 KVGECKAITC--KESGVIYYGKDGRKRIEISASEKEQIPALQTSGVHFKTFWELEDDLDV 1526
Query: 605 SRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPM 426
+YSNN++AMLN YGVEAAR TIIREV+ VF YG+ ++ RHL+LIAD+MTHTG YRPM
Sbjct: 1527 RYIYSNNVHAMLNAYGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHTGSYRPM 1586
Query: 425 SRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELM 246
+R GSI++S SPF+KM FETA FIVEAA HG DNLETPS+RICLGLPVKMGTGC +L+
Sbjct: 1587 NRTGSIADSTSPFIKMCFETAGNFIVEAAYHGQVDNLETPSARICLGLPVKMGTGCHDLI 1646
Query: 245 QKLDV 231
QKL++
Sbjct: 1647 QKLEI 1651
>gb|EMJ04262.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
Length = 1612
Score = 1292 bits (3343), Expect = 0.0
Identities = 707/1283 (55%), Positives = 876/1283 (68%), Gaps = 60/1283 (4%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P A R TYPER TPWNV KLR A++NG EIHPGAT YVD L +++ R++I
Sbjct: 372 GIPPYFATRLTYPERVTPWNVDKLRNAIVNGSEIHPGATQYVDKSGPKILRQNRRERISI 431
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSS+GA+ Q G + + E KIV+RHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 432 SRKLPSSKGAVMQHGKGSDNDIESKIVHRHLRDGDIVLVNRQPTLHKPSIMAHVVRVLKG 491
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDE+NVHFPQDEISR+EAYNIVNAN QY+ PT GD +R LI
Sbjct: 492 EKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRSEAYNIVNANNQYVKPTSGDPIRALI 551
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDH++SAVLLT K+TFL +F+QLLY S V AR + G +KV + +SEG ++ LL
Sbjct: 552 QDHVISAVLLTKKDTFLRWDQFNQLLYSSCVSARVSDAFSGKPDKKVFMFNSEGTMQPLL 611
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT-----GD--------- 3036
P IWKPEPLWTGKQVITALLNHITRG P TVE KIP+ +F G+
Sbjct: 612 PAIWKPEPLWTGKQVITALLNHITRGSPPVTVERDAKIPRGFFNCKNVEGEDKSGNDGQQ 671
Query: 3035 ----------CYKNGEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSN 2886
K+ +++++ E++LL+++N LVRGVIDKAQFG +GLVHTVQE YGS+
Sbjct: 672 KKRKPSKEQATDKDSSKEKEEPDENHLLIYRNNLVRGVIDKAQFGDYGLVHTVQEFYGSD 731
Query: 2885 SAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKF 2709
+AG LLS LS LFT++LQ+HGFTCG+DDL++L DA+ KD+LE EDVGE V+ +F++
Sbjct: 732 TAGKLLSVLSHLFTVYLQMHGFTCGIDDLLLLESKDAKMKDQLESCEDVGENVYRDFIEV 791
Query: 2708 KP-GQIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLK 2532
K + P ELQL I+ I S+ ESA ASLD +M ++L NK + S + K LL GL K
Sbjct: 792 KDVKRKDPVELQLNIENFIRSNGESALASLDRRMISQLNNKTS--NSDVFKQLLLRGLSK 849
Query: 2531 PFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRA 2352
P KNCI +MTT+GAKGS N QQI++YLGQQELEGKRVP+M+SGKTLPCFPPWD++SRA
Sbjct: 850 PSVKNCIYLMTTSGAKGSVANLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRA 909
Query: 2351 GGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTV 2172
GGFI DRFLTGL PQEYYFHCMAGREGLVDTAVKTSRSGYLQRC+IKNLE LKV YD TV
Sbjct: 910 GGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTV 969
Query: 2171 RDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQR-QFNSYIEKLPEGL 1995
RDADGSIIQF YGEDG+DVH TSF++ F++L N+E +K + Q + N YI+ LP L
Sbjct: 970 RDADGSIIQFRYGEDGIDVHMTSFIQKFESLIANKEMFHKKGRRQMDKLNPYIKDLPLAL 1029
Query: 1994 EEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQK 1815
+E+A +F+ + K K+ Q F++L++ K
Sbjct: 1030 KEKAEKFVHNLALKEKDHNF-----------------------------QEDFLKLMEHK 1060
Query: 1814 YLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVI 1635
YL SLAQ GEPVGV+A QSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA++ I
Sbjct: 1061 YLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAANDI 1120
Query: 1634 KTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMD---VQLSIHPRQVARTYKLIIK 1464
KTP++TCP + RSK E L ++KK+TVAD++ESM V I Q R YKL +
Sbjct: 1121 KTPVMTCPLQKGRSKEEAQELADKLKKITVADIIESMKVTFVPFFIQDGQTCRIYKLEMT 1180
Query: 1463 VKDTEFV------PLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSN 1302
+ E + D + L+ VF+RELEDAI+NH++ LS++SGIKNF S + SN
Sbjct: 1181 LHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLLSKISGIKNFTPDSQPKASN 1240
Query: 1301 EADEDDSGVRTQ------EAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXX 1140
E DE+ R+Q + D G D KRK QATDEM
Sbjct: 1241 ETDENLPEKRSQREEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDYEDGCD--- 1297
Query: 1139 XXXXELSEDGEKGKSDGDHLE------DTENGKDEEAEHSEDND--GASNADEV--MSEA 990
E E SDGD E + E GKD E + ND S +E +++
Sbjct: 1298 ------DEVREADLSDGDESEIDEEENEVEIGKDGEIGVIDANDEMPGSPLEEAGDLAKP 1351
Query: 989 KSSGRKGRATSE-------RIEMPKEDSKKIRRGISMEVKGLSFEVDFRFT-TEPHLLLA 834
KS +K ++ S+ R EM K K+ R I + KG FEV FRF EPH+LL+
Sbjct: 1352 KSKEKKTKSGSQIRKKRKVRAEMVK---KETDRAIFVSAKGFHFEVHFRFADNEPHILLS 1408
Query: 833 QIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKAS 654
QIAQKTA+KVYI+RSGK++ CK Q DE V+ K N+ ++ A++ +
Sbjct: 1409 QIAQKTAQKVYIQRSGKVADCK--QITCDENQVLCFGKDPENKQSFSSKEKKEMPALQTT 1466
Query: 653 GVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHL 474
G+DF +FW++ D LD+ +YSNNI+AMLNTYGVEAAR TIIRE+ VF YG+ ++ RHL
Sbjct: 1467 GIDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARETIIREINNVFKSYGISVNIRHL 1526
Query: 473 SLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRI 294
+LIAD+MTH GGYRP++R G I ES+SPF KM+FETASKFIVEAA HG D LETPS+RI
Sbjct: 1527 TLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFIVEAAYHGQVDRLETPSARI 1586
Query: 293 CLGLPVKMGTGCFELMQKLDV*C 225
CLGLPV +GTGCF+LM K++V C
Sbjct: 1587 CLGLPVNVGTGCFDLMHKMEVEC 1609
>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
Length = 1397
Score = 1290 bits (3339), Expect = 0.0
Identities = 706/1267 (55%), Positives = 883/1267 (69%), Gaps = 46/1267 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR A+ING E HPGAT YVD +ST +LP S+K R++I
Sbjct: 177 GIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISI 236
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 237 SRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 296
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LI
Sbjct: 297 EKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALI 356
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT ++TFL+R EF+QLLY SGV + S G +KV + SE + ++
Sbjct: 357 QDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPII 416
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNA- 2997
P I KP+PLWTGKQVI+++L+HITRGR P TV KIP+++F KN + ++N
Sbjct: 417 PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQP 476
Query: 2996 -------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGI 2874
E +L+++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI
Sbjct: 477 KNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGI 536
Query: 2873 LLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ 2697
LLS SRLFT+FLQ+HGFTCGVDDL+I+ D +RK +LE E E H E K
Sbjct: 537 LLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN- 595
Query: 2696 IGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKN 2517
ELQLEI++ I D E+A +LD KM + L N+ + +G +L LL+ GL+K +N
Sbjct: 596 -SETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGEN 651
Query: 2516 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFIT 2337
CIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+
Sbjct: 652 CISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFIS 711
Query: 2336 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADG 2157
DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADG
Sbjct: 712 DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADG 771
Query: 2156 SIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEEAR 1980
SI+QF YGEDG+DVHQTSF+ F+AL N++ + +K +Q +K LP+GL +A
Sbjct: 772 SIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAE 831
Query: 1979 RFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSL 1800
+FI+E K + ++I + F+ L+K K+LSSL
Sbjct: 832 QFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLSSL 863
Query: 1799 AQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPIL 1620
AQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS I+TP++
Sbjct: 864 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVM 923
Query: 1619 TCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII------ 1467
TCP + ++K + + L +++KK+TVAD++ESM+V + ++ + YKL +
Sbjct: 924 TCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPD 983
Query: 1466 KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADED 1287
K + + + D LK VFLRELEDAI+NH++ LS++SGIK FM S SNE DED
Sbjct: 984 KYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDED 1043
Query: 1286 DSGVRTQEA-----XXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXEL 1122
S R++E DLG D QK+KQQ TDEM L
Sbjct: 1044 VSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASL 1103
Query: 1121 SE-DGEKGKSDGD------HLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRA 963
+ + E S+ + ++ ++NGKDE ++ S + + SN S + +G + +
Sbjct: 1104 AALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSREEKTGSEPKR 1160
Query: 962 TSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGK 783
+ + +++S R I ++GL FEV F+ EPH+LLAQIA+KTAKKVYI+ GK
Sbjct: 1161 KKMKAKFVRKESD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGK 1217
Query: 782 ISQCKMVQYDPDEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDL 612
I QC++ D E V + D KK+ + D EK A+ +GVDF +FW+M D +
Sbjct: 1218 IDQCRVT--DCSENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFGAFWKMEDHI 1270
Query: 611 DLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYR 432
D+ LYSN+I+AMLNTYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YR
Sbjct: 1271 DVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYR 1330
Query: 431 PMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFE 252
PMSR G I+ES+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTG F+
Sbjct: 1331 PMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFD 1390
Query: 251 LMQKLDV 231
LMQK+++
Sbjct: 1391 LMQKVEI 1397
>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 1290 bits (3339), Expect = 0.0
Identities = 706/1267 (55%), Positives = 883/1267 (69%), Gaps = 46/1267 (3%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR A+ING E HPGAT YVD +ST +LP S+K R++I
Sbjct: 469 GIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISI 528
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 529 SRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 588
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LI
Sbjct: 589 EKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALI 648
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT ++TFL+R EF+QLLY SGV + S G +KV + SE + ++
Sbjct: 649 QDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPII 708
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNA- 2997
P I KP+PLWTGKQVI+++L+HITRGR P TV KIP+++F KN + ++N
Sbjct: 709 PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQP 768
Query: 2996 -------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGI 2874
E +L+++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI
Sbjct: 769 KNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGI 828
Query: 2873 LLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ 2697
LLS SRLFT+FLQ+HGFTCGVDDL+I+ D +RK +LE E E H E K
Sbjct: 829 LLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVN- 887
Query: 2696 IGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKN 2517
ELQLEI++ I D E+A +LD KM + L N+ + +G +L LL+ GL+K +N
Sbjct: 888 -SETELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGEN 943
Query: 2516 CISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFIT 2337
CIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI+
Sbjct: 944 CISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFIS 1003
Query: 2336 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADG 2157
DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDADG
Sbjct: 1004 DRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADG 1063
Query: 2156 SIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEEAR 1980
SI+QF YGEDG+DVHQTSF+ F+AL N++ + +K +Q +K LP+GL +A
Sbjct: 1064 SIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKAE 1123
Query: 1979 RFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSL 1800
+FI+E K + ++I + F+ L+K K+LSSL
Sbjct: 1124 QFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLSSL 1155
Query: 1799 AQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPIL 1620
AQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS I+TP++
Sbjct: 1156 AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPVM 1215
Query: 1619 TCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII------ 1467
TCP + ++K + + L +++KK+TVAD++ESM+V + ++ + YKL +
Sbjct: 1216 TCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKPD 1275
Query: 1466 KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADED 1287
K + + + D LK VFLRELEDAI+NH++ LS++SGIK FM S SNE DED
Sbjct: 1276 KYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDED 1335
Query: 1286 DSGVRTQEA-----XXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXEL 1122
S R++E DLG D QK+KQQ TDEM L
Sbjct: 1336 VSEGRSRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASL 1395
Query: 1121 SE-DGEKGKSDGD------HLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRA 963
+ + E S+ + ++ ++NGKDE ++ S + + SN S + +G + +
Sbjct: 1396 AALESEIDMSEDETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSREEKTGSEPKR 1452
Query: 962 TSERIEMPKEDSKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGK 783
+ + +++S R I ++GL FEV F+ EPH+LLAQIA+KTAKKVYI+ GK
Sbjct: 1453 KKMKAKFVRKESD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGK 1509
Query: 782 ISQCKMVQYDPDEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDL 612
I QC++ D E V + D KK+ + D EK A+ +GVDF +FW+M D +
Sbjct: 1510 IDQCRVT--DCSENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFGAFWKMEDHI 1562
Query: 611 DLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYR 432
D+ LYSN+I+AMLNTYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YR
Sbjct: 1563 DVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYR 1622
Query: 431 PMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFE 252
PMSR G I+ES+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTG F+
Sbjct: 1623 PMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFD 1682
Query: 251 LMQKLDV 231
LMQK+++
Sbjct: 1683 LMQKVEI 1689
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 1286 bits (3327), Expect = 0.0
Identities = 709/1290 (54%), Positives = 882/1290 (68%), Gaps = 69/1290 (5%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR ++ING EIHPGAT Y+D +ST++LP +KKMR++I
Sbjct: 470 GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 529
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
+RKL +SRGA+ Q G + + EFEGKIVYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 530 ARKLDTSRGAIVQPGKDSDNEFEGKIVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 589
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDE+SRAEAYNIVNAN QY+ P+ GD +R LI
Sbjct: 590 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 649
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL R EF QLLY SGV + G GS G ++V + SE V LL
Sbjct: 650 QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 709
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFT--------GDCYKN-- 3024
P IWKPEPLWTGKQVITA+LNHITRGR P VE GK+P+++F D KN
Sbjct: 710 PAIWKPEPLWTGKQVITAVLNHITRGRPPFVVERGGKLPQDFFKTRFNADKQSDRKKNDK 769
Query: 3023 ----------------------GEEDEDQNAEHN-----------LLVWKNELVRGVIDK 2943
G+ E++ AE N LL++KN+LVRGVIDK
Sbjct: 770 GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 829
Query: 2942 AQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKD 2763
AQF +GLVHTVQELYGSN+AG LLSALSRLFT+FLQ+HGFTCGVDDL+IL + +RK+
Sbjct: 830 AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 889
Query: 2762 KLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNK 2589
L G E++G+ VH E ++ + G +I P +L+ EI+K + ++A A DMKM ++L NK
Sbjct: 890 HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL-NK 948
Query: 2588 LTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 2409
T S ++ LL+ GLLKP KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPR
Sbjct: 949 HT--SSSVINELLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 1006
Query: 2408 MVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 2229
MVSGKTLP F PWD+ RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 1007 MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1066
Query: 2228 QRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQK 2049
QRCLIKNLE LK+ YDY+VRDADGSI+QF YGEDGVDVHQTSF+ F AL N+E I +K
Sbjct: 1067 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKK 1126
Query: 2048 FQNQRQF-NSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSN 1872
Q N+YI +LP+ L++ A +F +K LSN
Sbjct: 1127 CSGQLDASNAYIMELPDALKDNAEKFA---------------------------DKFLSN 1159
Query: 1871 KEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMN 1692
E + F++LVK K++ SLAQ GEPVG++A+QSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 1160 -----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLASQSVGEPSTQMTLNTFHLAGRGEMN 1214
Query: 1691 VTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL 1512
VTLGIPRLQEIL AS IKTP++TCP +++ + L ++KK+TVAD+V+ + V++
Sbjct: 1215 VTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKV 1274
Query: 1511 ---SIHPRQVARTYKLIIKVKDTEFVP------LADIHDTLKSVFLRELEDAIENHVIFL 1359
+ H Q Y L +++ + P L D + L+ VF+RELED I+NH++ L
Sbjct: 1275 RAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLL 1334
Query: 1358 SRVSGIKNFMSSSISEVSNEADEDDSGVRTQ--EAXXXXXXXXXXXXXDLGSDVQKRKQQ 1185
S+++GIKN S + SNE D+D SG +Q DLG D K+KQ+
Sbjct: 1335 SKINGIKNVASGLTQKASNETDQDGSGNVSQCRGDDDDADDADGEEAEDLGMDAHKQKQR 1394
Query: 1184 ATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENG-KDEEAEHSEDNDGASNAD 1008
ATDE DG G ++ E+ D++AE ++D A+N
Sbjct: 1395 ATDEKDYEDGSEEEM-------NDGVSAAGFGSEIDQAESEIDDDQAETEIEDDRATNEI 1447
Query: 1007 EVMSEA----------KSSGRKGRATSERIEMPKEDSKK-IRRGISMEVKGLSFEVDFRF 861
E + KSS +K ++ S+R + + KK R I + +G+ FE F+F
Sbjct: 1448 ETSQDQASENLKPFTPKSSKKKSKSKSKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKF 1507
Query: 860 TTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDD 681
EP++LLAQIA+ AKKVYI+ SGKI QC++ E VI+ K R D + ++
Sbjct: 1508 INEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCK--ESQVIYYGKDPKTREDIKPEEK 1565
Query: 680 TSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIY 501
A+ +GVDF +FW + D +D+ +YSNNI AML TYGVEAAR TIIRE+K VF Y
Sbjct: 1566 EKVQALHTTGVDFHAFWRLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSY 1625
Query: 500 GVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTD 321
G+ ++ RHLSLIAD+MTH+GGYRPMSR G I+ES+SPF KM+FETASKFIVEAA++G D
Sbjct: 1626 GISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFETASKFIVEAASYGQVD 1685
Query: 320 NLETPSSRICLGLPVKMGTGCFELMQKLDV 231
L+TPS+RICLGLPVKMGTG F+LMQKL+V
Sbjct: 1686 KLDTPSARICLGLPVKMGTGSFDLMQKLEV 1715
>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
Length = 1637
Score = 1282 bits (3317), Expect = 0.0
Identities = 698/1251 (55%), Positives = 861/1251 (68%), Gaps = 30/1251 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR +YPER TPWNV LR A++NGP+ HPGAT Y D +TVKLP + K+ I
Sbjct: 439 GIPPYFALRLSYPERVTPWNVTMLRNAILNGPQSHPGATHYTDQQATVKLPPNGKLLSFI 498
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRG + G + EFEGKIVYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 499 SRKLPSSRGVILDHGKISDQEFEGKIVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKG 558
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LI
Sbjct: 559 EKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALI 618
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TF+T F QLLY SGV G GS G +KV + +SE +
Sbjct: 619 QDHIVSAALLTKKDTFITYEVFIQLLYSSGVSMTGLGSFSGKHGQKVFMTNSEFEMFLFP 678
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------TGDCYKN 3024
P IWKPEPLWTGKQVI+ALL +ITR P TVE KIP N+F T D +N
Sbjct: 679 PAIWKPEPLWTGKQVISALLYYITRDSPPFTVEKNAKIPSNFFKTQVRDGKRHTRDKSRN 738
Query: 3023 GEEDEDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFT 2844
E +D E LL++KN+LVRGV+DKAQFG +G++HTVQELYGS AG LLSALSRLFT
Sbjct: 739 KVEPDD---EDKLLIYKNDLVRGVVDKAQFGDYGIIHTVQELYGSKVAGNLLSALSRLFT 795
Query: 2843 IFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEELQLE 2670
FLQ+HGFTCGVDDL+I D +R D+L E++G+ VH EF+ I P LQL
Sbjct: 796 TFLQMHGFTCGVDDLMITEEKDVERMDQLRSCEEIGDIVHREFIGVMNSDIIDPITLQLN 855
Query: 2669 IQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTG 2490
I+K I S+ E+A LD KM + L +R S ILK LL+ G+LKP KNCIS+MTT+G
Sbjct: 856 IEKKIRSNGEAALTYLDRKMTSNLN---SRTSSGILKDLLSDGILKPSGKNCISLMTTSG 912
Query: 2489 AKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRP 2310
AKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD + RAGGFI DRFLTGL P
Sbjct: 913 AKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFAPWDCSPRAGGFIIDRFLTGLHP 972
Query: 2309 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGE 2130
QEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGE
Sbjct: 973 QEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGE 1032
Query: 2129 DGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDK 1953
DGVDVH TSF+ F+AL N+E + Q +S YI KLP+ L+E+A F +D
Sbjct: 1033 DGVDVHHTSFINKFEALSTNKELVYGNCCRQLDRSSPYINKLPDALKEKAENFF---RDS 1089
Query: 1952 SKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGV 1773
K++ +GS ++ +F++L++ KY+S LAQ GE VGV
Sbjct: 1090 LKQRNLGSL-------------------------KRAEFLKLMEHKYVSCLAQPGESVGV 1124
Query: 1772 IAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRS 1593
+A+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEI+M A+ IKTP +TCP +S
Sbjct: 1125 LASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVMAAARDIKTPFMTCPLRSNKS 1184
Query: 1592 KHEVVSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------ 1440
E + L ++KK+TVAD+++SM V +S+ QV YKL++K+ + P
Sbjct: 1185 MEEAICLADKLKKITVADIIKSMKVSVVPVSVLGGQVCSIYKLVMKLYKPKQYPKYSDIT 1244
Query: 1439 LADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNF-------MSSSISEVSNEADEDDS 1281
L D DTL+ F+RELEDAIENH+ LS++SGIK F +SS N ++ +
Sbjct: 1245 LEDWEDTLRISFVRELEDAIENHMALLSKISGIKKFKTDPQSHSNSSEDAHGNGSESETK 1304
Query: 1280 GVRTQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDG-EK 1104
G + DLGSD QKRK+Q TDE+ EDG E+
Sbjct: 1305 GKSNDDDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDY---------------EDGPEE 1349
Query: 1103 GKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSK 924
DG E+ EN +D ++ + S + +SE+KS K E+ + + ++
Sbjct: 1350 ETHDGVLSEEIENDEDNVDDNMTLDASDSEGLDELSESKSIFEKDSLKREK-KKSRPTTR 1408
Query: 923 KIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDE 744
K R + ++ KG+ F++ F+FT EP +LLA+IA ++AKKV I+ SG++ +CK V
Sbjct: 1409 KYDRAVFVKAKGMHFQIHFKFTGEPDILLAEIALRSAKKVCIQNSGRVGECKAVTCKESG 1468
Query: 743 KTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNT 564
+D +K R D A++ SGV FK+FWE+ DDLD+ +YSNN++AMLN
Sbjct: 1469 VMYYGEDSRK--RDDIPASVKEKIPALQTSGVHFKTFWELQDDLDVRYIYSNNVHAMLNA 1526
Query: 563 YGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFL 384
YGVEAAR TIIREV+ VF YG+ ++ RHL+LIAD+MTH+GGYRPM+R+GSI++ SPF+
Sbjct: 1527 YGVEAARETIIREVQNVFKSYGISVNIRHLTLIADFMTHSGGYRPMNRNGSIADCTSPFI 1586
Query: 383 KMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
KM FETASKFIVEAA HG DNLETPSSRICLGLPVKMGTGC +L+QKL++
Sbjct: 1587 KMCFETASKFIVEAAYHGQVDNLETPSSRICLGLPVKMGTGCHDLIQKLEI 1637
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 1279 bits (3310), Expect = 0.0
Identities = 705/1290 (54%), Positives = 882/1290 (68%), Gaps = 69/1290 (5%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR ++ING EIHPGAT Y+D +ST++LP +KKMR++I
Sbjct: 470 GIPPYFALRLTYPERVTPWNVVKLRDSIINGAEIHPGATHYLDKLSTMRLPPNKKMRISI 529
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
RKL +SRGA+ Q G + + EFEGK+VYRHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 530 GRKLDTSRGAIVQPGKDSDNEFEGKMVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 589
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKTLRMHYANCS+YNADFDGDE+NVHFPQDE+SRAEAYNIVNAN QY+ P+ GD +R LI
Sbjct: 590 EKTLRMHYANCSTYNADFDGDEMNVHFPQDEVSRAEAYNIVNANNQYVRPSNGDPLRSLI 649
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL R EF QLLY SGV + G GS G ++V + SE V LL
Sbjct: 650 QDHIVSAALLTKKDTFLNRDEFCQLLYSSGVSSSGLGSFTGKPGQRVLISRSEQEVLPLL 709
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF----------------- 3045
P IWKPEPLWTGKQVITA+LNHITRGR P VE GK+P+++F
Sbjct: 710 PAIWKPEPLWTGKQVITAVLNHITRGRPPFIVERGGKLPQDFFKTRFNADKQSGRKKNDK 769
Query: 3044 -----TGDCYKN----------GEEDEDQNAEHN-----------LLVWKNELVRGVIDK 2943
T +K+ G+ E++ AE N LL++KN+LVRGVIDK
Sbjct: 770 GKLSKTNKMHKDKSGKKKEVVEGKPGEEKEAEKNKSKEKELSEEKLLIYKNDLVRGVIDK 829
Query: 2942 AQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKD 2763
AQF +GLVHTVQELYGSN+AG LLSALSRLFT+FLQ+HGFTCGVDDL+IL + +RK+
Sbjct: 830 AQFADYGLVHTVQELYGSNTAGTLLSALSRLFTVFLQMHGFTCGVDDLLILKDKERERKN 889
Query: 2762 KLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNK 2589
L G E++G+ VH E ++ + G +I P +L+ EI+K + ++A A DMKM ++L NK
Sbjct: 890 HLHGSEEIGKRVHLEALELEDGAEIDPIKLKSEIEKAMRGGGDAAVAYFDMKMTSQL-NK 948
Query: 2588 LTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPR 2409
T S ++ LL+ GLLKP KN IS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPR
Sbjct: 949 HT--SSSVINDLLSEGLLKPTGKNWISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPR 1006
Query: 2408 MVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 2229
MVSGKTLP F PWD+ RAGGFI DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 1007 MVSGKTLPSFHPWDWAPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYL 1066
Query: 2228 QRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQK 2049
QRCLIKNLE LK+ YDY+VRDADGSI+QF YGEDGVDVHQTSF+ F AL N+E I +K
Sbjct: 1067 QRCLIKNLECLKISYDYSVRDADGSIVQFCYGEDGVDVHQTSFISKFDALAANQEMIYKK 1126
Query: 2048 FQNQRQF-NSYIEKLPEGLEEEARRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSN 1872
Q N+YI +LP+ L++ A +F +K LSN
Sbjct: 1127 CSGQLDASNAYIMELPDALKDNAEKFA---------------------------DKFLSN 1159
Query: 1871 KEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMN 1692
E + F++LVK K++ SLAQ GEPVG++AAQSVGEPSTQMTLNTFHLAGRGEMN
Sbjct: 1160 -----EMAKQDFLKLVKHKFVLSLAQPGEPVGLLAAQSVGEPSTQMTLNTFHLAGRGEMN 1214
Query: 1691 VTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL 1512
VTLGIPRLQEIL AS IKTP++TCP +++ + L ++KK+TVAD+V+ + V++
Sbjct: 1215 VTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISVKV 1274
Query: 1511 ---SIHPRQVARTYKLIIKVKDTEFVP------LADIHDTLKSVFLRELEDAIENHVIFL 1359
+ H Q Y L +++ + P L D + L+ VF+RELED I+NH++ L
Sbjct: 1275 RAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELEDTIQNHLLLL 1334
Query: 1358 SRVSGIKNFMSSSISEVSNEADEDDSGVRTQ--EAXXXXXXXXXXXXXDLGSDVQKRKQQ 1185
S+++GIKN S + SNE D++ SG +Q DLG D K+KQ+
Sbjct: 1335 SKINGIKNVASGLTQKASNETDQEGSGNVSQCRGDDDDADDADGEEAEDLGMDAHKQKQR 1394
Query: 1184 ATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDTENG-KDEEAEHSEDNDGASNAD 1008
ATDE DG G ++ E+ D++AE ++D A+N
Sbjct: 1395 ATDEKDYEDGSEGEM-------NDGVSAAGFGSEIDQAESEIDDDQAETEIEDDRATNEI 1447
Query: 1007 EVMSEA----------KSSGRKGRATSERIEMPKEDSKK-IRRGISMEVKGLSFEVDFRF 861
E + KSS +K ++ ++R + + KK R I + +G+ FE F+F
Sbjct: 1448 ENSQDQASENLKPFTPKSSKKKSKSKTKRKKARAKLVKKDTDRAIYVAARGMHFEAHFKF 1507
Query: 860 TTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKPNRGDAEKQDD 681
EP++LLAQIA+ AKKVYI+ SGKI QC++ E VI+ K R D + ++
Sbjct: 1508 INEPNILLAQIARHVAKKVYIQSSGKIDQCQVTNCK--ESQVIYYGKDPKKREDIKPEEK 1565
Query: 680 TSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATIIREVKQVFDIY 501
A+ +GVDF +FW++ D +D+ +YSNNI AML TYGVEAAR TIIRE+K VF Y
Sbjct: 1566 EKVQALHTTGVDFHAFWQLQDFIDVRYIYSNNIQAMLETYGVEAARETIIREIKHVFGSY 1625
Query: 500 GVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFIVEAATHGLTD 321
G+ ++ RHLSLIAD+MTH+GGYRPMSR G I+ES+SPF KM+FE ASKFIVEAA++G D
Sbjct: 1626 GISVNTRHLSLIADFMTHSGGYRPMSRLGGIAESVSPFSKMTFEIASKFIVEAASYGQVD 1685
Query: 320 NLETPSSRICLGLPVKMGTGCFELMQKLDV 231
L+TPS+RICLGLPVKMGTG F+LMQKL+V
Sbjct: 1686 KLDTPSARICLGLPVKMGTGSFDLMQKLEV 1715
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 1279 bits (3310), Expect = 0.0
Identities = 702/1254 (55%), Positives = 867/1254 (69%), Gaps = 33/1254 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKL--PASKKMRV 3720
G P ALR TYPER T WNV KLR A+INGPE HPGAT Y+D ++TVKL S+K R+
Sbjct: 445 GIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRI 504
Query: 3719 AISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 3540
+ISRKLPSSRG + G D+ EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVL
Sbjct: 505 SISRKLPSSRGVVVDQGC-DDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 563
Query: 3539 KGEKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 3363
KGEKT+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ +R
Sbjct: 564 KGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIR 623
Query: 3362 GLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVE 3183
LIQDHI+SAVLLT K+TFL EFSQLLY SG+ + +K+ +D + +
Sbjct: 624 ALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEML 683
Query: 3182 SLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQ 3003
+LP +WKPEPLWTGKQV+TALL+HIT+G P VE KIP+ + D E +
Sbjct: 684 PVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFLILD------EGNSK 737
Query: 3002 NAEH--------------NLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLS 2865
EH +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS
Sbjct: 738 KKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLS 797
Query: 2864 ALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IG 2691
+SRLFT+FLQ HGFTCGVDDL+++ D +R+ +L+ E +GE+VH F+K K G+ +
Sbjct: 798 VMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLD 857
Query: 2690 PEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCI 2511
P LQL I+K I + E+A SLD KM ++L + S++LK LL+ GLLKP KNCI
Sbjct: 858 PMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCI 915
Query: 2510 SVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDR 2331
S+MTT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DR
Sbjct: 916 SLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDR 975
Query: 2330 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSI 2151
FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+
Sbjct: 976 FLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSV 1035
Query: 2150 IQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRF 1974
IQF YGEDGVDVH+T+F+ F+AL N++ + + +Q ++N +I +LP L E+
Sbjct: 1036 IQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFI 1095
Query: 1973 IQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQ 1794
+ SK+K G +++ FI L++ KYLSSLAQ
Sbjct: 1096 YNSL---SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQ 1127
Query: 1793 SGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTC 1614
GEPVGV+AAQS+GEPSTQMTLNTFH AGRGEMNVTLGIPRLQEILMTAS IKTPI+TC
Sbjct: 1128 PGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTC 1187
Query: 1613 PFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE-- 1449
P + S L +++KK+TVAD++ESM+V + S R++ YKL I E
Sbjct: 1188 PLKEGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENN 1247
Query: 1448 ----FVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDS 1281
+ D+ +TL++VFL ELE IE ++ LS+++GIK F+ S S+ S+E DE S
Sbjct: 1248 AQHGHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKXFVPDSQSKGSSEGDEVSS 1307
Query: 1280 GVRTQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKG 1101
R +E DLGSD +K+K QA DEM S E
Sbjct: 1308 S-RQEEMDDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKES-STGFESE 1365
Query: 1100 KSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKK 921
GD E T N E + S + N E++ +KS K + T E K S+
Sbjct: 1366 VDQGDEAEITNNDMIEIVKDS----ASENQPEIVDVSKSMS-KEKTTETSKEKKKVKSEL 1420
Query: 920 IR----RGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYD 753
+R R I +E K FEV F+FT EPH LL+QI Q+ A+KV I+RSGKI QC+ Q
Sbjct: 1421 VRKETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QIT 1478
Query: 752 PDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAM 573
E VI+ R + + ++ A++ SGVDFK+ WEM D+LD+ +YSN+I+AM
Sbjct: 1479 CKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAM 1538
Query: 572 LNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLS 393
L TYGVEAARATIIRE++ +F YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+S
Sbjct: 1539 LQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSIS 1598
Query: 392 PFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
PF +M+FETA KFIV+AA HG DNLETPSSRICLGLPVKMGTG F+LMQK++V
Sbjct: 1599 PFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1652
>gb|EOY09355.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 1279 bits (3309), Expect = 0.0
Identities = 696/1256 (55%), Positives = 874/1256 (69%), Gaps = 35/1256 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV KLR A+ING E HPGAT YVD +ST +LP S+K R++I
Sbjct: 469 GIPPYFALRLTYPERVTPWNVVKLREAIINGSEFHPGATHYVDKLSTKRLPPSQKARISI 528
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKLPSSRGA+ Q G N + EFEGKIV RHLQDGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 529 SRKLPSSRGAIAQPGKNLDYEFEGKIVLRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKG 588
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ P+ G+ +R LI
Sbjct: 589 EKTIRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVRPSNGEPIRALI 648
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSAVLLT ++TFL+R EF+QLLY SGV + S G +KV + SE + ++
Sbjct: 649 QDHIVSAVLLTKRDTFLSRDEFNQLLYSSGVSSLAQNSFSGKPGQKVFVSTSEEGMLPII 708
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQNA- 2997
P I KP+PLWTGKQVI+++L+HITRGR P TV KIP+++F KN + ++N
Sbjct: 709 PAILKPKPLWTGKQVISSVLSHITRGRPPFTVGKTAKIPRDFFRNRRNKNKQSSREENQP 768
Query: 2996 -------------------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGI 2874
E +L+++N+LVRGVIDKAQF +GLVHTVQELYGSN+AGI
Sbjct: 769 KNDGQKAKVAEKNSKKEPDEEKILIYRNDLVRGVIDKAQFADYGLVHTVQELYGSNTAGI 828
Query: 2873 LLSALSRLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFK-PG 2700
LLS SRLFT+FLQ+HGFTCGVDDL+I+ D +RK +LE E E H E K
Sbjct: 829 LLSVFSRLFTVFLQMHGFTCGVDDLLIMEDKDIERKKQLEDCEKKVTEAHYELFGVKVNS 888
Query: 2699 QIGPEELQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPK 2520
+ P ELQLEI++ I D E+A +LD KM + L N+ + +G +L LL+ GL+K +
Sbjct: 889 ETAPTELQLEIERTIRRDGETALTALDRKMISVL-NENSSKG--VLTELLSEGLVKSMGE 945
Query: 2519 NCISVMTTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFI 2340
NCIS+MTT+GAKGS VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF PWD+ +RAGGFI
Sbjct: 946 NCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFI 1005
Query: 2339 TDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDAD 2160
+DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LK+ YD+TVRDAD
Sbjct: 1006 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDAD 1065
Query: 2159 GSIIQFYYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQRQFNSYIEK-LPEGLEEEA 1983
GSI+QF YGEDG+DVHQTSF+ F+AL N++ + +K +Q +K LP+GL +A
Sbjct: 1066 GSIVQFIYGEDGIDVHQTSFIAKFEALALNQDMMSEKLCSQLGEPDDSDKILPDGLRSKA 1125
Query: 1982 RRFIQEVQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSS 1803
+FI+E K + ++I + F+ L+K K+LSS
Sbjct: 1126 EQFIREEIKKYQHQKI----------------------------KPKDFLNLLKLKFLSS 1157
Query: 1802 LAQSGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPI 1623
LAQ GEPVGV+AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAS I+TP+
Sbjct: 1158 LAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIRTPV 1217
Query: 1622 LTCPFSQWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLII----- 1467
+TCP + ++K + + L +++KK+TVAD++ESM+V + ++ + YKL +
Sbjct: 1218 MTCPLHKGKTKEDALCLANKMKKITVADILESMEVSVAPFAVDNGDICSIYKLKMMLGKP 1277
Query: 1466 -KVKDTEFVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADE 1290
K + + + D LK VFLRELEDAI+NH++ LS++SGIK FM S SNE DE
Sbjct: 1278 DKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVLLSKISGIKKFMPDSQRNASNEMDE 1337
Query: 1289 DDSGVRTQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDG 1110
D S R++E +D A DE E+
Sbjct: 1338 DVSEGRSRETK---------------NDDDDDDDDADDEERAEDLGASLAALESEIDMSE 1382
Query: 1109 EKGKSDGDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKED 930
++ + ++ ++NGKDE ++ S + + SN S + +G + + + + +++
Sbjct: 1383 DETGTIQINMIGSDNGKDEISQSSPNLENRSNP---KSREEKTGSEPKRKKMKAKFVRKE 1439
Query: 929 SKKIRRGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDP 750
S R I ++GL FEV F+ EPH+LLAQIA+KTAKKVYI+ GKI QC++ D
Sbjct: 1440 SD---RAIFNAIRGLCFEVHFKLKNEPHILLAQIAEKTAKKVYIQSFGKIDQCRVT--DC 1494
Query: 749 DEKTVIW---DDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNIN 579
E V + D KK+ + D EK A+ +GVDF +FW+M D +D+ LYSN+I+
Sbjct: 1495 SENQVFYYGEDPKKRKSPSDKEK-----IQALHTTGVDFGAFWKMEDHIDVRYLYSNSIH 1549
Query: 578 AMLNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISES 399
AMLNTYGVEAAR TIIRE+ VF YG+ ++ RHL+LIAD+MTH+G YRPMSR G I+ES
Sbjct: 1550 AMLNTYGVEAARETIIREISHVFTSYGIAVNIRHLTLIADFMTHSGRYRPMSRLGGIAES 1609
Query: 398 LSPFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
+SPF KMSFETASKFIVEAA HGL DNLETPSSRICLGLPVKMGTG F+LMQK+++
Sbjct: 1610 ISPFSKMSFETASKFIVEAAKHGLVDNLETPSSRICLGLPVKMGTGSFDLMQKVEI 1665
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 1278 bits (3308), Expect = 0.0
Identities = 697/1251 (55%), Positives = 867/1251 (69%), Gaps = 30/1251 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKL--PASKKMRV 3720
G P ALR TYPER T WNV KLR A+INGPE HPGAT Y+D ++TVKL S+K R+
Sbjct: 439 GIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRI 498
Query: 3719 AISRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 3540
+ISRKLPSSRG + G D+ EFEGKIV RHLQDGDIVLVNRQPTLHKPSIMAHVVRVL
Sbjct: 499 SISRKLPSSRGVVVDQGC-DDYEFEGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVL 557
Query: 3539 KGEKTLRMHYANCS-SYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVR 3363
KGEKT+RMHYANCS +YNADFDGDE+NVHFPQDEISRAEAYNIVNAN QY+ PT G+ +R
Sbjct: 558 KGEKTIRMHYANCSITYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIR 617
Query: 3362 GLIQDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVE 3183
LIQDHI+SAVLLT K+TFL EFSQLLY SG+ + +K+ +D + +
Sbjct: 618 ALIQDHIISAVLLTKKDTFLNFDEFSQLLYSSGISTSKACASSEKPGQKIFTLDFDAEML 677
Query: 3182 SLLPTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDCYKNGEEDEDQ 3003
+LP +WKPEPLWTGKQV+TALL+HIT+G P VE KIP+ +F N + +
Sbjct: 678 PVLPAVWKPEPLWTGKQVVTALLDHITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKKKE 737
Query: 3002 NA-----------EHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALS 2856
+ + +LL++KNELVRGVIDKAQFG +GLVHTVQELYGSN+AG+LLS +S
Sbjct: 738 HTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGLLLSVMS 797
Query: 2855 RLFTIFLQIHGFTCGVDDLIILPHYDAQRKDKLE-GEDVGEEVHCEFVKFKPGQ-IGPEE 2682
RLFT+FLQ HGFTCGVDDL+++ D +R+ +L+ E +GE+VH F+K K G+ + P
Sbjct: 798 RLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDGEKLDPMT 857
Query: 2681 LQLEIQKVICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVM 2502
LQL I+K I + E+A SLD KM ++L + S++LK LL+ GLLKP KNCIS+M
Sbjct: 858 LQLNIEKTISYNGEAALTSLDRKMTSQLNERTGN--SKVLKDLLSEGLLKPSVKNCISLM 915
Query: 2501 TTTGAKGSTVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLT 2322
TT+GAKG T NFQQIS++LGQQ+LEGKRVPRMVSGKTLPCFPPWD+ SRAGGFI DRFLT
Sbjct: 916 TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 975
Query: 2321 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQF 2142
GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+CYD+TVRDADGS+IQF
Sbjct: 976 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADGSVIQF 1035
Query: 2141 YYGEDGVDVHQTSFLKNFKALEDNRETICQKFQNQ-RQFNSYIEKLPEGLEEEARRFIQE 1965
YGEDGVDVH+T+F+ F+AL N++ + + +Q ++N +I +LP L E+
Sbjct: 1036 QYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGEFIYNS 1095
Query: 1964 VQDKSKEKQIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGE 1785
+ SK+K G +++ FI L++ KYLSSLAQ GE
Sbjct: 1096 L---SKDKVPGLVLKE-------------------------DFIRLLENKYLSSLAQPGE 1127
Query: 1784 PVGVIAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFS 1605
PVGV+AAQS+GEPSTQMTLNTFH GRGEMNVTLGI RLQEILMTAS IKTPI+TCP
Sbjct: 1128 PVGVLAAQSIGEPSTQMTLNTFHHVGRGEMNVTLGILRLQEILMTASQDIKTPIMTCPLK 1187
Query: 1604 QWRSKHEVVSLVSRVKKVTVADLVESMDVQL---SIHPRQVARTYKLIIKVKDTE----- 1449
+ S L +++KK+TVAD++ESM+V + S R++ YKL I E
Sbjct: 1188 EGYSMDVAKGLANKLKKITVADIIESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQH 1247
Query: 1448 -FVPLADIHDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVR 1272
+ D+ +TL++VFL ELE IE ++ LS+++GIKNF+ S S+ S+E DE S +
Sbjct: 1248 GHISPEDLENTLETVFLEELEGLIEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQ 1307
Query: 1271 TQEAXXXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSD 1092
+ DLGSD++K+K QA DEM S E
Sbjct: 1308 KENDDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKES-STGFESEVDQ 1366
Query: 1091 GDHLEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKKIR- 915
GD E T N E + S + N E++ +KS K + T E K S+ +R
Sbjct: 1367 GDEAEITNNDMIEIVKDS----ASENQPEIVDVSKSMS-KEKTTETSKEKKKVKSELVRK 1421
Query: 914 ---RGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDE 744
R I +E K FEV F+FT EPH LL+QI Q+ A+KV I+RSGKI QC+ Q E
Sbjct: 1422 ETDRSIFVEAKENHFEVHFKFTNEPHTLLSQIVQRAAQKVSIQRSGKIIQCQ--QITCKE 1479
Query: 743 KTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNT 564
VI+ R + + ++ A++ SGVDFK+ WEM D+LD+ +YSN+I+AML T
Sbjct: 1480 GQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKTLWEMQDELDVRYIYSNDIHAMLQT 1539
Query: 563 YGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFL 384
YGVEAARATIIRE++ +F YG+ ++ RHLSL+ADYMTH+GGYRPMSR G IS+S+SPF
Sbjct: 1540 YGVEAARATIIREIQNIFTSYGISVNIRHLSLVADYMTHSGGYRPMSRLGGISDSISPFS 1599
Query: 383 KMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
+M+FETA KFIV+AA HG DNLETPSSRICLGLPVKMGTG F+LMQK++V
Sbjct: 1600 RMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPVKMGTGSFDLMQKIEV 1650
>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1650
Score = 1268 bits (3280), Expect = 0.0
Identities = 683/1247 (54%), Positives = 864/1247 (69%), Gaps = 27/1247 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV +LR A++NGPE HPGAT Y D ST+KLP ++ R
Sbjct: 442 GIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLT 501
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SRKL SSRG + +G + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 502 SRKLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKG 561
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LI
Sbjct: 562 EKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALI 621
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL+ EF+QLLY SGV G G PG +K+ + +S+ +
Sbjct: 622 QDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFP 681
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDC------YKNGEED 3012
P I+KPEPLWTGKQVI+ALL +IT+G P TVE KIP ++F K+
Sbjct: 682 PAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIK 741
Query: 3011 EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQ 2832
+D+ E LL+++N+LVRGV+DKAQFG +G+VHTVQE YGSN+AGILLSALSRLFT FLQ
Sbjct: 742 KDEPDEDKLLIYRNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGILLSALSRLFTNFLQ 801
Query: 2831 IHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKV 2658
+HGFTCGVDDL++ D++R ++LE E++G+ VH EF+ G I P +QL ++K
Sbjct: 802 MHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKK 861
Query: 2657 ICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGS 2478
I S+ E+A LD KM ++N +R + +LK LL+ G+LKP KN IS+MTT+GAKGS
Sbjct: 862 IRSNGEAAITYLDRKM---ISNLNSRTSTGVLKVLLSEGILKPSGKNWISLMTTSGAKGS 918
Query: 2477 TVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYY 2298
VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF WD + RAGGFI DRFLT LRPQEYY
Sbjct: 919 MVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYY 978
Query: 2297 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVD 2118
FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGEDGVD
Sbjct: 979 FHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVD 1038
Query: 2117 VHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEK 1941
VHQTSF+ F+AL N+E + + +S YI KLP+ L+ +A +FI + SK++
Sbjct: 1039 VHQTSFINKFEALSTNKELVYSNCCRELDKSSPYINKLPDALKGKAEKFI--LDSSSKQR 1096
Query: 1940 QIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQ 1761
GS F+ L++ KY+SSLAQ GEPVGV+A+Q
Sbjct: 1097 NSGS-------------------------MTHTNFLHLMEHKYVSSLAQPGEPVGVLASQ 1131
Query: 1760 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEV 1581
SVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL AS IKTP +TCP +S +
Sbjct: 1132 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDA 1191
Query: 1580 VSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADI 1428
+ L ++KK+TVAD++ESM V +++ ++ YKL++K+ + P L D
Sbjct: 1192 IRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDW 1251
Query: 1427 HDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRT-QEAXXX 1251
+TL+ F+R LEDAIEN++ L+++SGI NF + + SN A++D S +T +
Sbjct: 1252 EETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDDDD 1311
Query: 1250 XXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED--GEKGKSDGDHLE 1077
DLG D QK K+Q D++ ELSED G + D ++++
Sbjct: 1312 GDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEYVK 1371
Query: 1076 DTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKED------SKKIR 915
D +GKD+E DG + D E + +K + + P+E+ SKK
Sbjct: 1372 DDGDGKDDE-------DGKGDEDGSDIEVNENDKKVTLGANYSQGPEENSKSQPVSKKFD 1424
Query: 914 RGISMEVKGLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTV 735
R + ++ + FE+ F+FT EPH+LLAQIAQKTA+KV I+ GK+ QCK + E V
Sbjct: 1425 RRVYVKFEKRHFEIHFKFTGEPHILLAQIAQKTAEKVCIQNFGKVGQCKAITC--KESGV 1482
Query: 734 IWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGV 555
I+ + R + A++ SG+ FKSFWEM DDL++ +YSNN++A+L+TYGV
Sbjct: 1483 IYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAILSTYGV 1542
Query: 554 EAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMS 375
EAA+ TIIREV+ VF YG+ ++ RHL LIAD+MTH+G YRPMSR GSI++S SPFLK+
Sbjct: 1543 EAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTSPFLKIC 1602
Query: 374 FETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLD 234
FETAS FIVEAA HG DNL++PS+RICLGLPVKMGTGC EL+QKL+
Sbjct: 1603 FETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1649
>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1660
Score = 1265 bits (3273), Expect = 0.0
Identities = 684/1253 (54%), Positives = 864/1253 (68%), Gaps = 33/1253 (2%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWNV +LR A++NGPE HPGAT Y D ST+KLP ++ R
Sbjct: 446 GIPPYFALRLTYPERVTPWNVVELRNAILNGPETHPGATLYADKTSTLKLPLDRRSRSLT 505
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SR+L SSRG + +G + EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 506 SRRLQSSRGVIMHNGKIHDNEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKG 565
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LI
Sbjct: 566 EKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALI 625
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL+ EF+QLLY SGV G G PG +K+ + +S+ +
Sbjct: 626 QDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSMTGMGPFPGKPGQKIFMSNSDSEMFLFP 685
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYFTGDC------YKNGEED 3012
P I+KPEPLWTGKQVI+ALL +IT+G P TVE KIP ++F K+
Sbjct: 686 PAIFKPEPLWTGKQVISALLYYITKGSPPFTVEKNAKIPSSFFKTRMREGKKRTKDTSIK 745
Query: 3011 EDQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQ 2832
+D+ E LL++KN+LVRGV+DKAQFG +G+VHTVQE YGSN+AG LLSALSRLFT FLQ
Sbjct: 746 KDEPDEDKLLIYKNDLVRGVVDKAQFGDYGIVHTVQEFYGSNTAGFLLSALSRLFTNFLQ 805
Query: 2831 IHGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPG-QIGPEELQLEIQKV 2658
+HGFTCGVDDL++ D++R ++LE E++G+ VH EF+ G I P +QL ++K
Sbjct: 806 MHGFTCGVDDLLLTEGKDSERTNQLESCEEIGDIVHREFIGVMEGDNIDPITMQLNVEKK 865
Query: 2657 ICSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGS 2478
I S+ E+A LD KM ++N +R S +LK LL+ G+LKP KN IS+MTT+GAKGS
Sbjct: 866 IRSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGS 922
Query: 2477 TVNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYY 2298
VNFQQIS++LGQQELEGKRVPRMVSGKTLPCF WD + RAGGFI DRFLT LRPQEYY
Sbjct: 923 MVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFTSWDCSPRAGGFIIDRFLTALRPQEYY 982
Query: 2297 FHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVD 2118
FHCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKVCYD+TVRDADGSIIQF+YGEDGVD
Sbjct: 983 FHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVD 1042
Query: 2117 VHQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEK 1941
VHQTSF+ F+AL N+E + + +S YI KLP+ L+ +A +FI++ SK++
Sbjct: 1043 VHQTSFINKFEALSTNKELVYSNCCRELDESSPYINKLPDALKGKAEKFIRD--SSSKQR 1100
Query: 1940 QIGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQ 1761
GS F++L++ KY+SSLAQ GEPVGV+A+Q
Sbjct: 1101 NSGS-------------------------MTHTNFLQLMEHKYVSSLAQPGEPVGVLASQ 1135
Query: 1760 SVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEV 1581
SVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEIL AS IKTP +TCP +S +
Sbjct: 1136 SVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILTAASAHIKTPFMTCPLRPNKSMEDA 1195
Query: 1580 VSLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADI 1428
+ L ++KK+TVAD++ESM V +++ ++ YKL++K+ + P L D
Sbjct: 1196 IRLADKMKKITVADIIESMKVSVVPVTVQDGRICSIYKLMMKLHKPKHYPKYTDVTLKDW 1255
Query: 1427 HDTLKSVFLRELEDAIENHVIFLSRVSGIKNFMSSSISEVSNEADEDDSGVRT---QEAX 1257
+TL+ F+R LEDAIEN++ L+++SGI NF + + SN A++D S +T +
Sbjct: 1256 EETLRVSFVRGLEDAIENNIALLAKISGITNFKTDAQPNSSNGAEDDPSNGKTNDDDDDD 1315
Query: 1256 XXXXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSED--GEKGKSDGDH 1083
DLG D QK K+Q D++ ELSED G + D +H
Sbjct: 1316 DDGDADDTEGAEDLGLDAQKSKRQVVDDVDYDDGPEEETLEDGELSEDLEGVEDAKDNEH 1375
Query: 1082 LEDTENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKED------SKK 921
++D +GKD+E DG + D E + +K + P+E+ SKK
Sbjct: 1376 VKDDGDGKDDE-------DGKGDEDGSDIEVNENDKKVTLGVNYSQGPEENSKSQPVSKK 1428
Query: 920 IRRGISMEVKGLSFEVDFRFTTEPHLLLAQ----IAQKTAKKVYIKRSGKISQCKMVQYD 753
R + ++ + FE+ F+FT EPH+LLAQ IAQKTA+KV I+ GK+ QCK +
Sbjct: 1429 FDRRVYVKFEKRHFEIHFKFTDEPHILLAQLLSTIAQKTAEKVCIQNFGKVGQCKAITC- 1487
Query: 752 PDEKTVIWDDKKKPNRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAM 573
E VI+ + R + A++ SG+ FKSFWEM DDL++ +YSNN++A+
Sbjct: 1488 -KESGVIYYGEDDSKREEIPSSVKEKIPALQTSGIHFKSFWEMQDDLNVRYVYSNNVHAI 1546
Query: 572 LNTYGVEAARATIIREVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLS 393
L+TYGVEAA+ TIIREV+ VF YG+ ++ RHL LIAD+MTH+G YRPMSR GSI++S S
Sbjct: 1547 LSTYGVEAAKETIIREVQNVFKSYGISVNIRHLMLIADFMTHSGCYRPMSRKGSIADSTS 1606
Query: 392 PFLKMSFETASKFIVEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLD 234
PFLK+ FETAS FIVEAA HG DNL++PS+RICLGLPVKMGTGC EL+QKL+
Sbjct: 1607 PFLKICFETASNFIVEAACHGQVDNLDSPSARICLGLPVKMGTGCHELIQKLE 1659
>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1628
Score = 1247 bits (3227), Expect = 0.0
Identities = 670/1240 (54%), Positives = 862/1240 (69%), Gaps = 19/1240 (1%)
Frame = -3
Query: 3893 GPHPSCALRFTYPERGTPWNVGKLRGAVINGPEIHPGATTYVDSVSTVKLPASKKMRVAI 3714
G P ALR TYPER TPWN KL A++NGP+ HPGA Y D ST++L K +R +
Sbjct: 434 GIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSST 493
Query: 3713 SRKLPSSRGALTQSGNNDELEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKG 3534
SR+L SSRG + G E EFEGK+VYRHL+DGD+VLVNRQPTLHKPSIMAHVVRVLKG
Sbjct: 494 SRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKG 553
Query: 3533 EKTLRMHYANCSSYNADFDGDEINVHFPQDEISRAEAYNIVNANEQYIVPTRGDTVRGLI 3354
EKT+RMHYANCS+YNADFDGDEINVHFPQDEISRAEAYNIVNAN QY+ PT GD +R LI
Sbjct: 554 EKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALI 613
Query: 3353 QDHIVSAVLLTMKNTFLTRSEFSQLLYGSGVFARGPGSLPGNLSRKVSLVDSEGLVESLL 3174
QDHIVSA LLT K+TFL+ EF+QLLY SGV G GS +KV + +SE +
Sbjct: 614 QDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGSFSCKPGQKVLMSNSESEMFLFP 673
Query: 3173 PTIWKPEPLWTGKQVITALLNHITRGRAPCTVENQGKIPKNYF---TGDCYKNGEED--E 3009
P I+KPEPLWTGKQVI+ALL +IT+GR P TVE KIP ++F TG+ K+ ++ +
Sbjct: 674 PAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKIPSSFFKTQTGEIKKHTKDTSRK 733
Query: 3008 DQNAEHNLLVWKNELVRGVIDKAQFGKFGLVHTVQELYGSNSAGILLSALSRLFTIFLQI 2829
E LL+++N+LVRGV+DKAQFG +G+VHTVQE YGSN+AGILLSALSRLFT FLQ+
Sbjct: 734 KDELEDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEFYGSNTAGILLSALSRLFTNFLQM 793
Query: 2828 HGFTCGVDDLIILPHYDAQRKDKLEG-EDVGEEVHCEFVKFKPGQ-IGPEELQLEIQKVI 2655
HGFTCGVDDL+I D++R ++LE E++G+ VH EF+ + I P +QL ++K I
Sbjct: 794 HGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHREFIGVMESENIDPITMQLNVEKKI 853
Query: 2654 CSDRESATASLDMKMKNKLTNKLTREGSQILKHLLTAGLLKPFPKNCISVMTTTGAKGST 2475
S+ E+A LD KM ++N +R S +LK LL+ G LKP KN IS+MTT+GAKGS
Sbjct: 854 RSNGEAAITYLDRKM---ISNLNSRTSSGVLKELLSKGSLKPSGKNWISLMTTSGAKGSM 910
Query: 2474 VNFQQISAYLGQQELEGKRVPRMVSGKTLPCFPPWDFTSRAGGFITDRFLTGLRPQEYYF 2295
VNFQQIS++LGQQELEGKRVPRMVSGKTLPCFP WD + RAGGFI DRFLT LRPQEYYF
Sbjct: 911 VNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPRAGGFIIDRFLTALRPQEYYF 970
Query: 2294 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDV 2115
HCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKVCYD+TVRD+DGSIIQF+YGEDGVDV
Sbjct: 971 HCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHTVRDSDGSIIQFHYGEDGVDV 1030
Query: 2114 HQTSFLKNFKALEDNRETICQKFQNQRQFNS-YIEKLPEGLEEEARRFIQEVQDKSKEKQ 1938
HQTSF+ F+AL N+E I Q +S YI KLP+ L+ +A FI++ K +
Sbjct: 1031 HQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSSKQR--- 1087
Query: 1937 IGSAIEQLHKKRKGRKNKHLSNKEKATEKEQNKFIELVKQKYLSSLAQSGEPVGVIAAQS 1758
++ ++ F+++++ KY+SSLAQ GEPVGV+A+QS
Sbjct: 1088 ------------------------NSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQS 1123
Query: 1757 VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASDVIKTPILTCPFSQWRSKHEVV 1578
VGEP+TQMTLNTFHLAGRGEMNVTLGIPRL EI++ AS IKTP +TCP +S + +
Sbjct: 1124 VGEPATQMTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAI 1183
Query: 1577 SLVSRVKKVTVADLVESMDVQ---LSIHPRQVARTYKLIIKVKDTEFVP------LADIH 1425
L ++KK+TVAD++ESM V +++ ++ YKL +K+ + P L D
Sbjct: 1184 RLADKMKKITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWE 1243
Query: 1424 DTLKSVFLRELEDAIENHVIFLSRVSGIKNFM--SSSISEVSNEADEDDSGVRTQEAXXX 1251
+TL+ F+RELEDAIENH+ L+R+SGIK+F S+S + + N+ + + + +
Sbjct: 1244 ETLRVGFVRELEDAIENHISLLARISGIKDFQGKSNSSNGLDNDHSNESASNQNGQTDDD 1303
Query: 1250 XXXXXXXXXXDLGSDVQKRKQQATDEMXXXXXXXXXXXXXXELSEDGEKGKSDGDHLEDT 1071
+ G D QK KQ+ATDE+ + DGEK + +E +
Sbjct: 1304 DEVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEE-------THDGEK----SEDVEVS 1352
Query: 1070 ENGKDEEAEHSEDNDGASNADEVMSEAKSSGRKGRATSERIEMPKEDSKKIRRGISMEVK 891
E+GKD+E ++ + +G + EV K+ + + S++ + + SKK R + ++
Sbjct: 1353 EDGKDDEDDNGVEVNGDDSDIEVNDSDKNVTLEETSKSKKRKF-EPASKKYDRRVYVKAG 1411
Query: 890 GLSFEVDFRFTTEPHLLLAQIAQKTAKKVYIKRSGKISQCKMVQYDPDEKTVIWDDKKKP 711
G+ FE+ F+F EPH+LLAQIAQ+TA+KV I+ GK+ QCK + E VI+ +
Sbjct: 1412 GMRFEIHFKFIGEPHILLAQIAQRTAEKVCIQNFGKVGQCKAITC--KESGVIYYGEDDS 1469
Query: 710 NRGDAEKQDDTSYWAVKASGVDFKSFWEMHDDLDLSRLYSNNINAMLNTYGVEAARATII 531
R D A++ SG+ FK+FWEM DDL + +YSN+++A+L YGVEAA+ II
Sbjct: 1470 KRDDIPSSVKEKIPALQTSGIHFKTFWEMEDDLKVRYVYSNDVHAILKAYGVEAAKEVII 1529
Query: 530 REVKQVFDIYGVKIDFRHLSLIADYMTHTGGYRPMSRHGSISESLSPFLKMSFETASKFI 351
REV+ VF YG+ ++ RHL LIAD+MTH+G YRP++R G I++S SPF+K+S+ETAS FI
Sbjct: 1530 REVQNVFKSYGISVNIRHLMLIADFMTHSGSYRPLTRSG-IADSTSPFVKISYETASNFI 1588
Query: 350 VEAATHGLTDNLETPSSRICLGLPVKMGTGCFELMQKLDV 231
VEAA HG D LETPSSRICLGLPVKMGTGC +L+QKL++
Sbjct: 1589 VEAARHGQVDTLETPSSRICLGLPVKMGTGCIDLIQKLEI 1628