BLASTX nr result
ID: Rehmannia25_contig00003046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00003046
(906 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, I... 329 1e-87
ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V sub... 328 2e-87
gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea] 309 8e-82
gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus pe... 308 2e-81
ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ri... 307 4e-81
ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, I... 304 3e-80
ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citr... 303 4e-80
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 303 6e-80
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 303 6e-80
ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V sub... 303 8e-80
ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Popu... 303 8e-80
gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus... 302 1e-79
gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family pro... 301 2e-79
ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, I... 301 3e-79
ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, I... 300 6e-79
ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, I... 298 1e-78
gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subun... 297 4e-78
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 296 5e-78
ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III ... 295 2e-77
gb|AFK43162.1| unknown [Medicago truncatula] 292 1e-76
>ref|XP_004237333.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 329 bits (843), Expect = 1e-87
Identities = 157/222 (70%), Positives = 196/222 (88%)
Frame = -3
Query: 859 AMDVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRN 680
AMDVDGE NLG+CL+S +D+G++ESHRY+LARRT+LEMLKDRGFA+P+ EI+ +L+EFR
Sbjct: 7 AMDVDGE-NLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFRE 65
Query: 679 KHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVL 500
K+G+ PDV+ LR+SA+H++D + KV+V+FC N VKVNVIR+I I+NK+SLSRLILV+
Sbjct: 66 KYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVI 125
Query: 499 QNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEK 320
QN++TN A K VELF FKVEIFQITDL VNITKH LKP+H++LTD EKE LL+KY+++EK
Sbjct: 126 QNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEK 185
Query: 319 QLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
QLPRMSQKDAIARYYGLEKGQVVKVTYS E+ + HVTYRC+W
Sbjct: 186 QLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>ref|XP_006364435.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 328 bits (841), Expect = 2e-87
Identities = 156/222 (70%), Positives = 196/222 (88%)
Frame = -3
Query: 859 AMDVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRN 680
AMDVDG+ NLG+CL+S +D+G++ESHRY+LARRT+LEMLKDRGFA+P+ EI+ +L+EFR
Sbjct: 7 AMDVDGD-NLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFRE 65
Query: 679 KHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVL 500
K+G+ PDV+ LR+SA+H++D + KV+V+FC N VKVNVIR+I I+NK+SLSRLILV+
Sbjct: 66 KYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVI 125
Query: 499 QNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEK 320
QN++TN A K VELF FKVEIFQITDL VNITKH LKP+H++LTD EKE LL+KY+++EK
Sbjct: 126 QNQMTNPAMKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEK 185
Query: 319 QLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
QLPRMSQKDAIARYYGLEKGQVVKVTYS E+ + HVTYRC+W
Sbjct: 186 QLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW 227
>gb|EPS63634.1| hypothetical protein M569_11151 [Genlisea aurea]
Length = 241
Score = 309 bits (792), Expect = 8e-82
Identities = 158/241 (65%), Positives = 189/241 (78%), Gaps = 14/241 (5%)
Frame = -3
Query: 874 MKREEAM---DVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIE 704
MK EEA ++ +ENLG+CLSS +D GS+ESHRYYLAR+T+LEMLKDRGFA+ +I+
Sbjct: 1 MKVEEAAIDETLEDDENLGTCLSSFVDKGSLESHRYYLARKTLLEMLKDRGFAISPADID 60
Query: 703 FSLEEFRNKHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDS 524
+L+EFR +H E P VD L+I+ALH DDPSIKV+VLFC IVKVN IRAI+ + N +
Sbjct: 61 ITLQEFRIRHSESPSVDGLKITALHGDDPSIKVLVLFCGPGIVKVNQIRAIAGDVYNNGT 120
Query: 523 LSRLILVLQNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLL 344
+S LILV Q+KIT+QA K V + FKVEIFQITDL VNITKH+LKPKHQ+L+ +EK +LL
Sbjct: 121 ISSLILVAQSKITSQALKAVNILKFKVEIFQITDLLVNITKHDLKPKHQILSAEEKADLL 180
Query: 343 RKYSIDEKQ-----------LPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCI 197
KYSI+EKQ LPRM QKDAIARYYGLEKGQVVKVTY GELTQLHVTYRC+
Sbjct: 181 SKYSIEEKQASKSKKASEAFLPRMLQKDAIARYYGLEKGQVVKVTYGGELTQLHVTYRCV 240
Query: 196 W 194
W
Sbjct: 241 W 241
>gb|EMJ03728.1| hypothetical protein PRUPE_ppa010980mg [Prunus persica]
Length = 228
Score = 308 bits (789), Expect = 2e-81
Identities = 146/220 (66%), Positives = 186/220 (84%)
Frame = -3
Query: 853 DVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKH 674
D +GE LG CL+ +D+GS ESHRYYL+RRTVLEM++DRG++VPS EI+ SL++FR H
Sbjct: 10 DANGEI-LGPCLTGYVDDGSPESHRYYLSRRTVLEMIRDRGYSVPSSEIDLSLQDFRALH 68
Query: 673 GEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQN 494
G+ PDV+ LR SA H+ DPS ++MV++C IVKVNVIR + + I NKD+L+ LIL+ QN
Sbjct: 69 GQNPDVERLRFSATHRTDPSDRIMVIYCGPGIVKVNVIRGLHSQIANKDTLNGLILITQN 128
Query: 493 KITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQL 314
+IT+QA KT+EL+PFK EIFQITDL VNITKH LKPKH VLT+QEK+ LL+KY+I+E QL
Sbjct: 129 QITSQALKTMELYPFKTEIFQITDLLVNITKHVLKPKHHVLTEQEKQKLLKKYNIEENQL 188
Query: 313 PRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
PR+S+KDAIA+YYGLEKGQVVKVTY+G++T+ HVTYRCIW
Sbjct: 189 PRLSRKDAIAQYYGLEKGQVVKVTYTGDITESHVTYRCIW 228
>ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 238
Score = 307 bits (786), Expect = 4e-81
Identities = 149/215 (69%), Positives = 179/215 (83%)
Frame = -3
Query: 838 ENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPD 659
E LG C SS D+G+ E+HRYYL+RRTVLEML+DRG++VPS EI+ SL+EFR HG PD
Sbjct: 24 EGLGKCFSSYADDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPD 83
Query: 658 VDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQ 479
+D L+ SA H DPS +++VLF I+KV+ IRAI+ IVNKDSL+ LILVLQN+ITNQ
Sbjct: 84 IDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQ 143
Query: 478 ASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQ 299
A K V+LF FKVE+FQITDL VNITKH LKPKHQVLTD+EK+ LL+ Y I+EKQLPR+ +
Sbjct: 144 AMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLR 203
Query: 298 KDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
KDAIARYYGLEKGQVVKVTYSGE+T+ HVTYRC+W
Sbjct: 204 KDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
>ref|XP_004230150.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Solanum lycopersicum]
Length = 227
Score = 304 bits (778), Expect = 3e-80
Identities = 146/222 (65%), Positives = 187/222 (84%)
Frame = -3
Query: 859 AMDVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRN 680
AM+VD N+ CL+S +D+G++ESHRY+LAR+T+LEMLKDRGFA+P+ EIE +L+EFR
Sbjct: 7 AMEVD-VVNVSPCLTSFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIETTLQEFRE 65
Query: 679 KHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVL 500
K+G+ PDV+ LRISA+H+ D + KV+V+FC N VK+NVIR I + I+NK+SLSRLIL++
Sbjct: 66 KYGQRPDVERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRNILSQIMNKESLSRLILII 125
Query: 499 QNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEK 320
+N +TN A K VE PFK EIFQITDL VNITKH LKPKH++LT+ EKE LL+KY+++EK
Sbjct: 126 ENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNAEKEQLLKKYNLEEK 185
Query: 319 QLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
QLPRMSQKDAIARYYGLEKGQVVKVTY+ E+ + H TYRC+W
Sbjct: 186 QLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHATYRCVW 227
>ref|XP_006442079.1| hypothetical protein CICLE_v10021999mg [Citrus clementina]
gi|568879109|ref|XP_006492520.1| PREDICTED: DNA-directed
RNA polymerase V subunit 5A-like isoform X1 [Citrus
sinensis] gi|557544341|gb|ESR55319.1| hypothetical
protein CICLE_v10021999mg [Citrus clementina]
Length = 236
Score = 303 bits (777), Expect = 4e-80
Identities = 151/229 (65%), Positives = 188/229 (82%), Gaps = 5/229 (2%)
Frame = -3
Query: 865 EEAMDVDGE-----ENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEF 701
+ +M+++G E SCLS +DNGS +S RYYL+RRTVLEMLKDRG+AV EI
Sbjct: 8 DSSMEMEGGNGYNGEPTESCLSGFVDNGSRDSLRYYLSRRTVLEMLKDRGYAVALSEINL 67
Query: 700 SLEEFRNKHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSL 521
S+++FR +G+ PDVD LRIS H+ DPS +++V+FC IVKVNVIR+I + IVN+D+L
Sbjct: 68 SVQDFRAIYGQDPDVDRLRISISHQSDPSKRILVVFCGPGIVKVNVIRSIISQIVNRDTL 127
Query: 520 SRLILVLQNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLR 341
+ LIL+LQN+IT+QA+K V LF FKVE+FQITDL VNITKH LKPKHQVLTDQEKE LL+
Sbjct: 128 TGLILILQNQITSQATKAVGLFQFKVEMFQITDLLVNITKHVLKPKHQVLTDQEKEKLLK 187
Query: 340 KYSIDEKQLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
KYSI+EKQLPRM +KDAIA+YYGLE+GQVVKVTYSGE+T+ HVTYRC+W
Sbjct: 188 KYSIEEKQLPRMLKKDAIAQYYGLERGQVVKVTYSGEITESHVTYRCVW 236
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 303 bits (776), Expect = 6e-80
Identities = 145/220 (65%), Positives = 184/220 (83%)
Frame = -3
Query: 853 DVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKH 674
D++G+ + CLSS +D G +ESHRYYLARRT+LEML+DRG+++P+ +I+ SL++FR+ +
Sbjct: 111 DLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFY 170
Query: 673 GEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQN 494
+ PD D LRISA + DPS K++V+FC ++VKVN IR+I+ IVNKDSLS+LILVLQN
Sbjct: 171 SQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQN 230
Query: 493 KITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQL 314
IT+QA K V+LF F+VE FQITDL VNITKH LKPKH+VLTDQEK LL+KYS++EKQL
Sbjct: 231 HITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQL 290
Query: 313 PRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
PRM Q+DAIARYYGLEKGQVVKV Y+GE+T HVTYRC+W
Sbjct: 291 PRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 330
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 303 bits (776), Expect = 6e-80
Identities = 145/220 (65%), Positives = 184/220 (83%)
Frame = -3
Query: 853 DVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKH 674
D++G+ + CLSS +D G +ESHRYYLARRT+LEML+DRG+++P+ +I+ SL++FR+ +
Sbjct: 10 DLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFY 69
Query: 673 GEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQN 494
+ PD D LRISA + DPS K++V+FC ++VKVN IR+I+ IVNKDSLS+LILVLQN
Sbjct: 70 SQKPDPDRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQN 129
Query: 493 KITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQL 314
IT+QA K V+LF F+VE FQITDL VNITKH LKPKH+VLTDQEK LL+KYS++EKQL
Sbjct: 130 HITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQL 189
Query: 313 PRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
PRM Q+DAIARYYGLEKGQVVKV Y+GE+T HVTYRC+W
Sbjct: 190 PRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
>ref|XP_006347844.1| PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Solanum
tuberosum]
Length = 227
Score = 303 bits (775), Expect = 8e-80
Identities = 144/222 (64%), Positives = 188/222 (84%)
Frame = -3
Query: 859 AMDVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRN 680
AM+VD N+ CL+S +D+G++ESHRY+LAR+T+LEMLKDRGFA+P+ EI+ +L+EFR
Sbjct: 7 AMEVD-VVNVSPCLASFVDDGTVESHRYFLARKTMLEMLKDRGFAIPNSEIDTTLQEFRE 65
Query: 679 KHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVL 500
K+G+ PD + LRISA+H+ D + KV+V+FC N VK+NVIR+I + I+NK+SLSRLIL++
Sbjct: 66 KYGQRPDAERLRISAMHRTDLTNKVLVIFCGPNSVKMNVIRSILSQIMNKESLSRLILII 125
Query: 499 QNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEK 320
+N +TN A K VE PFK EIFQITDL VNITKH LKPKH++LT+ EKE LL+KY++++K
Sbjct: 126 ENPMTNPAMKVVEDSPFKTEIFQITDLLVNITKHVLKPKHELLTNTEKEQLLKKYNLEDK 185
Query: 319 QLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
QLPRMSQKDAIARYYGLEKGQVVKVTY+ E+ + HVTYRC+W
Sbjct: 186 QLPRMSQKDAIARYYGLEKGQVVKVTYNNEIIETHVTYRCVW 227
>ref|XP_002323257.2| hypothetical protein POPTR_0016s03800g [Populus trichocarpa]
gi|550320761|gb|EEF05018.2| hypothetical protein
POPTR_0016s03800g [Populus trichocarpa]
Length = 243
Score = 303 bits (775), Expect = 8e-80
Identities = 143/217 (65%), Positives = 181/217 (83%)
Frame = -3
Query: 844 GEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEM 665
G E+LG CLSS +D GS ESHRYYL+RRTVLEMLKDRG++VPS EI+ SL++FR +G+
Sbjct: 27 GMESLGRCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQN 86
Query: 664 PDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKIT 485
PD++ L+ SA HK DPS +++V+FC +VKV +IR I+ I ++DSL+ LILVLQN IT
Sbjct: 87 PDIELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNIT 146
Query: 484 NQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRM 305
NQA K ++LF FK+EIFQITDL VNITKH LKPKHQVL++Q K+ LL+KYSI+EKQLPR+
Sbjct: 147 NQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRL 206
Query: 304 SQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
+KDAI+RYYGLE+GQVVKVTY G++T HVTYRC+W
Sbjct: 207 LKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 243
>gb|ESW34110.1| hypothetical protein PHAVU_001G125200g [Phaseolus vulgaris]
Length = 242
Score = 302 bits (774), Expect = 1e-79
Identities = 141/227 (62%), Positives = 183/227 (80%)
Frame = -3
Query: 874 MKREEAMDVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSL 695
+ +E + + E + CLS +D+G++ESHRYYL+RRT LEMLKDRG+++PS EI+ SL
Sbjct: 16 LAEQEGAEQEETEQVKGCLSKFIDDGTVESHRYYLSRRTTLEMLKDRGYSIPSNEIDLSL 75
Query: 694 EEFRNKHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSR 515
+FR+ HG PD D LR+S H +PS +++V+FC +VKV IR I+ IVN+D+LS
Sbjct: 76 SQFRHMHGHSPDPDRLRLSLAHATNPSKRILVIFCGPGVVKVTAIRNIAGQIVNRDTLSG 135
Query: 514 LILVLQNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKY 335
LIL+++N +T+QA K V LF FKVEIFQITDL VNITKH LKPKHQVLTD++K+NLL+K+
Sbjct: 136 LILIVENHVTSQALKAVGLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNLLKKF 195
Query: 334 SIDEKQLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
+I+EKQLPRM Q DAIARYYGLE+GQVVKVTYSGE+TQ+HVTYRC+W
Sbjct: 196 NIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEITQMHVTYRCVW 242
>gb|EOY09046.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
[Theobroma cacao]
Length = 228
Score = 301 bits (771), Expect = 2e-79
Identities = 148/220 (67%), Positives = 179/220 (81%)
Frame = -3
Query: 853 DVDGEENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKH 674
D E LG CLS ++D+GS ESHRYYL+RRTVLEML+DRG+AVP EI SL+EFR +
Sbjct: 9 DGSNGEALGKCLSGVVDDGSTESHRYYLSRRTVLEMLRDRGYAVPISEINLSLQEFRAIY 68
Query: 673 GEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQN 494
G+ PD D LR+SA HK DPS +++V+F +VKV+ IR I+ +I NK+SL+ LILVLQN
Sbjct: 69 GQSPDFDRLRLSATHKTDPSKRILVVFYGPGMVKVSGIRLIAGLITNKESLTGLILVLQN 128
Query: 493 KITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQL 314
ITNQA K ++LF FKVEIFQITDL VNITKH LKPKHQVLT+QEK+ LL+KYSI+EKQL
Sbjct: 129 HITNQALKALDLFSFKVEIFQITDLLVNITKHVLKPKHQVLTEQEKQKLLQKYSIEEKQL 188
Query: 313 PRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
PR+ +KDAIARYYG E+GQVVKV Y GE+TQ HVTYRC+W
Sbjct: 189 PRLLKKDAIARYYGYERGQVVKVMYDGEITQSHVTYRCVW 228
>ref|XP_004303601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Fragaria vesca subsp. vesca]
Length = 225
Score = 301 bits (770), Expect = 3e-79
Identities = 143/224 (63%), Positives = 188/224 (83%), Gaps = 1/224 (0%)
Frame = -3
Query: 862 EAMDVDGEENL-GSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEF 686
E + +G+E + G CLS +D+GS ESHRY+L+RRTVLEML+DRG++VPS EI+ SL++F
Sbjct: 2 EGENGNGDEVVAGPCLSGFVDDGSTESHRYFLSRRTVLEMLRDRGYSVPSSEIDLSLQDF 61
Query: 685 RNKHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLIL 506
R+ HG+ PD D L S +H DPS +++V++C IVKVNVIR + + I NKD+LS LIL
Sbjct: 62 RSLHGQNPDADRLCFSTVHSSDPSERMLVIYCGPGIVKVNVIRGLHSQIANKDTLSGLIL 121
Query: 505 VLQNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSID 326
+LQ +IT+QA KT++L+PFKVEIFQITDL VNITKH LKP+HQVLT+Q K+ LL+K++I+
Sbjct: 122 ILQGQITSQALKTLDLYPFKVEIFQITDLLVNITKHVLKPQHQVLTEQAKQALLKKFNIE 181
Query: 325 EKQLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
EKQLPR+SQKDAIA+YYGLE+GQVVKVTYSG++T+ HVTYRC+W
Sbjct: 182 EKQLPRISQKDAIAKYYGLERGQVVKVTYSGDITKGHVTYRCVW 225
>ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC1-like
[Cucumis sativus]
Length = 227
Score = 300 bits (767), Expect = 6e-79
Identities = 145/227 (63%), Positives = 180/227 (79%), Gaps = 6/227 (2%)
Frame = -3
Query: 856 MDVDGEE------NLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSL 695
M+ DG E G+CLSS +D+G+ ESHRY+L+RRTV+EMLKDRG+ + S I+FSL
Sbjct: 1 MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60
Query: 694 EEFRNKHGEMPDVDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSR 515
++FR G+ PDVD L++SA H DPS +V+V+FC VKVN IR I+ I NKDSL
Sbjct: 61 QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120
Query: 514 LILVLQNKITNQASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKY 335
LIL++QN+ITNQA K VELF FKVEIFQITDL VNITKH LKP HQVLT++EK+ LL++Y
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180
Query: 334 SIDEKQLPRMSQKDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
SI+EKQLPRM + DAIARYYGLEKGQVVKVTY G++T+ H+TYRC+W
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227
>ref|XP_004493418.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cicer arietinum]
Length = 244
Score = 298 bits (764), Expect = 1e-78
Identities = 141/212 (66%), Positives = 176/212 (83%)
Frame = -3
Query: 829 GSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPDVDE 650
G CL + +D+GS+ESHRYYL+RRT LEMLKDRG+++P EI+ SL EFR HG PDVD
Sbjct: 33 GKCLITKIDDGSVESHRYYLSRRTTLEMLKDRGYSIPPSEIQLSLHEFRQTHGHSPDVDR 92
Query: 649 LRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQASK 470
LR +A H +PS +++V+F IVKVNV+R I+ IVN+D+L+ LIL++Q++IT+QA K
Sbjct: 93 LRFTATHTTNPSKRILVIFSGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQSQITSQALK 152
Query: 469 TVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQKDA 290
V L FKVEIFQITDL VNITKH LKPKHQVLTD++K+NLL+KY+I EKQLPRM Q DA
Sbjct: 153 AVNLLSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIQEKQLPRMLQTDA 212
Query: 289 IARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
IARYYGLE+GQVVKVTY+GE+TQ+HVTYRC+W
Sbjct: 213 IARYYGLERGQVVKVTYTGEITQMHVTYRCVW 244
>gb|EXB41191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
notabilis]
Length = 231
Score = 297 bits (760), Expect = 4e-78
Identities = 139/215 (64%), Positives = 178/215 (82%)
Frame = -3
Query: 838 ENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPD 659
E LG+CLSSL+D GS+ESHRY+L+R T+LEMLKDRG++VPS +I SL +FR +G++PD
Sbjct: 17 ETLGTCLSSLIDKGSVESHRYFLSRITLLEMLKDRGYSVPSSDINLSLHDFRQIYGQIPD 76
Query: 658 VDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQ 479
VD LR S H DPS +++V+FC +VKV +R I+ IVN+++L+ LILVLQ+++TNQ
Sbjct: 77 VDRLRFSVTHLSDPSKRILVIFCEPGVVKVTSVRGIAGQIVNRNTLTGLILVLQSQMTNQ 136
Query: 478 ASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQ 299
A K VEL PFKVEIFQITDL +NITKH L+PKH+VLTDQEK+ LL+KYSI+ KQLPRMS+
Sbjct: 137 AQKAVELLPFKVEIFQITDLLINITKHLLRPKHRVLTDQEKQKLLKKYSIEVKQLPRMSK 196
Query: 298 KDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
DAIARYYGLEKGQVVK+ YSG +T ++TYRC+W
Sbjct: 197 NDAIARYYGLEKGQVVKIIYSGGITDSYITYRCVW 231
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 296 bits (759), Expect = 5e-78
Identities = 140/215 (65%), Positives = 175/215 (81%)
Frame = -3
Query: 838 ENLGSCLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPD 659
E CLS +DNGS+ESHRYYL+RRT LEMLKDRG+++PS EI+ SL +FR+ HG+ PD
Sbjct: 23 EQAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPD 82
Query: 658 VDELRISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQ 479
D LR+S H + S +++V+FC +VKV IR + I+N+D+L+ LIL+++N IT+Q
Sbjct: 83 PDRLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQ 142
Query: 478 ASKTVELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQ 299
A K V LF FKVEIFQITDL VNITKH LKPKHQVLTD++K NLL+KY+I+EKQLPRM Q
Sbjct: 143 ALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQ 202
Query: 298 KDAIARYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
DAIARYYGLE+GQVVKVTYSGE+TQ+HVTYRC+W
Sbjct: 203 TDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
>ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula] gi|124359979|gb|ABN07995.1| RNA
polymerase subunit, RPB5; RNA polymerase Rpb5,
N-terminal [Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases
I, II, and III subunit RPABC1 [Medicago truncatula]
Length = 248
Score = 295 bits (754), Expect = 2e-77
Identities = 140/210 (66%), Positives = 176/210 (83%)
Frame = -3
Query: 823 CLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPDVDELR 644
CL + DNGS+ESHRYYL+RRTVLEMLKDRG+++PS EI+ SL++FR HG+ PDVD LR
Sbjct: 39 CLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLR 98
Query: 643 ISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQASKTV 464
++A H +PS +++V+F IVKVN +R I+ IVN++SL+ LIL++QN+IT+QA K V
Sbjct: 99 LTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAV 158
Query: 463 ELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQKDAIA 284
L FKVEIFQITDL VN TKH LKPKHQVLTD++K+NLL+KY I EKQLPRM Q DAIA
Sbjct: 159 NLLSFKVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 218
Query: 283 RYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
RYYGL++GQVVKVTY+GE+TQ+HVTYRC+W
Sbjct: 219 RYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
>gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 292 bits (748), Expect = 1e-76
Identities = 139/210 (66%), Positives = 175/210 (83%)
Frame = -3
Query: 823 CLSSLLDNGSMESHRYYLARRTVLEMLKDRGFAVPSCEIEFSLEEFRNKHGEMPDVDELR 644
CL + DNGS+ESHRYYL+RRTVLEMLKDRG+++PS EI+ SL++FR HG+ PDVD LR
Sbjct: 39 CLFTKKDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLR 98
Query: 643 ISALHKDDPSIKVMVLFCSQNIVKVNVIRAISAMIVNKDSLSRLILVLQNKITNQASKTV 464
++A H +PS +++V+F IVKVN +R I+ IVN++SL+ LIL++QN+IT+QA K V
Sbjct: 99 LTATHATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAV 158
Query: 463 ELFPFKVEIFQITDLFVNITKHELKPKHQVLTDQEKENLLRKYSIDEKQLPRMSQKDAIA 284
L FKVEI QITDL VN TKH LKPKHQVLTD++K+NLL+KY I EKQLPRM Q DAIA
Sbjct: 159 NLLSFKVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 218
Query: 283 RYYGLEKGQVVKVTYSGELTQLHVTYRCIW 194
RYYGL++GQVVKVTY+GE+TQ+HVTYRC+W
Sbjct: 219 RYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248