BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00002521
         (1782 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated prot...   498   e-138
ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated prot...   497   e-138
ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated prot...   492   e-136
ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated prot...   478   e-132
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   462   e-127
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              462   e-127
gb|EOY11660.1| Tetratricopeptide repeat-like superfamily protein...   458   e-126
ref|XP_002330255.1| predicted protein [Populus trichocarpa]           435   e-119
ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Popu...   432   e-118
ref|NP_176039.2| carboxylate clamp-tetratricopeptide repeat prot...   432   e-118
ref|XP_006302207.1| hypothetical protein CARUB_v10020218mg [Caps...   430   e-117
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   429   e-117
ref|NP_001185250.1| carboxylate clamp-tetratricopeptide repeat p...   427   e-117
ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutr...   422   e-115
ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated prot...   421   e-115
ref|XP_002318949.1| predicted protein [Populus trichocarpa]           421   e-115
gb|EXB53029.1| RNA polymerase II-associated protein 3 [Morus not...   417   e-114
ref|XP_006588434.1| PREDICTED: uncharacterized protein LOC100784...   417   e-114
ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated prot...   417   e-113
ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated prot...   416   e-113

>ref|XP_004248819.1| PREDICTED: RNA polymerase II-associated protein 3-like [Solanum
            lycopersicum]
          Length = 470

 Score =  498 bits (1282), Expect = e-138
 Identities = 282/487 (57%), Positives = 341/487 (70%), Gaps = 12/487 (2%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VPS HSRD  QD +GL NNLQDWEL+ K KDKK++  A GK  L       + + SR
Sbjct: 1    MARVPSNHSRDQFQDMQGLFNNLQDWELALKGKDKKMKSQAGGKETL-------KEDWSR 53

Query: 1555 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1385
             S+   S + NG Q +GK+ S  N +    Y Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSEPLTSPQANGTQQVGKSTSIRNAAG--PYSYSKNYNPISHLSSELISEESNINANSEK 111

Query: 1384 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1205
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 112  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 171

Query: 1204 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1025
            RYIKAYSRRST+RKELGKLKES +DAEFAL LEP+N EIKKQY + K+L +K+ILKR SG
Sbjct: 172  RYIKAYSRRSTSRKELGKLKESIEDAEFALWLEPRNPEIKKQYGEVKALYEKEILKRVSG 231

Query: 1024 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 845
            A   S +G +     +   K  P +QSVS+SS   KVAE+     K NN R+V    + +
Sbjct: 232  ATDVSAQGPQKSGKTI---KIGPVIQSVSSSSQ--KVAEVRTIPAKENN-RDVLG--TAK 283

Query: 844  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 692
            +E   M+ +  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 284  VEDTHMQISNKDSDASPTVPTLNLAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 343

Query: 691  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 512
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RCIAT
Sbjct: 344  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCIAT 403

Query: 511  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 332
            FF+EDM L + YL++LTK+PRFDMIIMCL SADK+++ KIW+E+F K   +++  LG LR
Sbjct: 404  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSADKSELLKIWEEIFCKVAEEHSATLGALR 463

Query: 331  SRYGTKQ 311
              YG KQ
Sbjct: 464  VSYGLKQ 470


>ref|XP_006339932.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Solanum tuberosum]
          Length = 468

 Score =  497 bits (1280), Expect = e-138
 Identities = 284/486 (58%), Positives = 342/486 (70%), Gaps = 12/486 (2%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VPSKHSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       R + SR
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL-------REDWSR 53

Query: 1555 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1385
             S+   S +VNG + +GK+ S    S    Y+Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSELLTSPQVNGTR-VGKSTSI--RSAAGPYNYSKNYNPISHLSSELISEESNINANSEK 110

Query: 1384 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1205
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 111  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 170

Query: 1204 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1025
            RYIKAYSRRST+RKELGKLKES +DAEFALRLEPQN EIKKQY + K+L +K+I KR SG
Sbjct: 171  RYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSG 230

Query: 1024 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 845
            A   S + A+     +   K  P +QSVS+SS   K+AE+     K NN R+V    + +
Sbjct: 231  ATDVSAQRAQKSGKTI---KSGPVIQSVSSSSQ--KMAEVWTIPAKENN-RDVPG--TAK 282

Query: 844  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 692
            +E   M+ N  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 283  VEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 342

Query: 691  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 512
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RC+AT
Sbjct: 343  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVAT 402

Query: 511  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 332
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F K   +++  LG LR
Sbjct: 403  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALR 462

Query: 331  SRYGTK 314
              YG K
Sbjct: 463  VPYGLK 468


>ref|XP_006339933.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X2
            [Solanum tuberosum]
          Length = 467

 Score =  492 bits (1266), Expect = e-136
 Identities = 284/486 (58%), Positives = 341/486 (70%), Gaps = 12/486 (2%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VPSKHSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       R + SR
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL-------REDWSR 53

Query: 1555 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1385
             S+   S +VNG + +GK+ S    S    Y+Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSELLTSPQVNGTR-VGKSTSI--RSAAGPYNYSKNYNPISHLSSELISEESNINANSEK 110

Query: 1384 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1205
            ELGNE FKQKKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 111  ELGNECFKQKKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 170

Query: 1204 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1025
            RYIKAYSRRST+RKELGKLKES +DAEFALRLEPQN EIKKQY + K+L +K I KR SG
Sbjct: 171  RYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEK-IRKRVSG 229

Query: 1024 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 845
            A   S + A+     +   K  P +QSVS+SS   K+AE+     K NN R+V    + +
Sbjct: 230  ATDVSAQRAQKSGKTI---KSGPVIQSVSSSSQ--KMAEVWTIPAKENN-RDVPG--TAK 281

Query: 844  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 692
            +E   M+ N  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 282  VEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 341

Query: 691  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 512
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RC+AT
Sbjct: 342  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVAT 401

Query: 511  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 332
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F K   +++  LG LR
Sbjct: 402  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALR 461

Query: 331  SRYGTK 314
              YG K
Sbjct: 462  VPYGLK 467


>ref|XP_006339934.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X3
            [Solanum tuberosum]
          Length = 461

 Score =  478 bits (1231), Expect = e-132
 Identities = 278/486 (57%), Positives = 336/486 (69%), Gaps = 12/486 (2%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VPSKHSRD  QD +GLLNNLQDWELS K KDKK++  A GK  L       R + SR
Sbjct: 1    MAKVPSKHSRDQFQDMQGLLNNLQDWELSLKGKDKKMKSQAHGKETL-------REDWSR 53

Query: 1555 FSD---SARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEK 1385
             S+   S +VNG + +GK+ S    S    Y+Y K Y  +S LSS + S+ES ++ANSEK
Sbjct: 54   TSELLTSPQVNGTR-VGKSTSI--RSAAGPYNYSKNYNPISHLSSELISEESNINANSEK 110

Query: 1384 ELGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDD 1205
            EL       KKFNEAIDCYSRSIALSPTAV+YANRAM+Y+KIKRFQEAENDCTEALNLDD
Sbjct: 111  EL-------KKFNEAIDCYSRSIALSPTAVSYANRAMAYLKIKRFQEAENDCTEALNLDD 163

Query: 1204 RYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASG 1025
            RYIKAYSRRST+RKELGKLKES +DAEFALRLEPQN EIKKQY + K+L +K+I KR SG
Sbjct: 164  RYIKAYSRRSTSRKELGKLKESIEDAEFALRLEPQNPEIKKQYGEVKALYEKEIRKRVSG 223

Query: 1024 ALAGSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSME 845
            A   S + A+     +   K  P +QSVS+SS   K+AE+     K NN R+V    + +
Sbjct: 224  ATDVSAQRAQKSGKTI---KSGPVIQSVSSSSQ--KMAEVWTIPAKENN-RDVPG--TAK 275

Query: 844  IEINSMRSNGSDADSGSK---------TAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXX 692
            +E   M+ N  D+D+            TAK   K SKQEL  SVQ               
Sbjct: 276  VEDTHMQINNKDSDASPTVPTLNPAFGTAKKTHKISKQELEESVQELAARAAGLAKTEAA 335

Query: 691  KNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIAT 512
            KNI  P SAYQFE+SWRGLSGD +LQT+LLKVTSPA LP IFKNALSAP+L+DI+RC+AT
Sbjct: 336  KNIAAPNSAYQFEVSWRGLSGDRNLQTQLLKVTSPAMLPRIFKNALSAPMLMDIVRCVAT 395

Query: 511  FFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTTDYAEILGNLR 332
            FF+EDM L + YL++LTK+PRFDMIIMCL S DK+++ KIW+E+F K   +++  LG LR
Sbjct: 396  FFIEDMNLAIRYLEDLTKVPRFDMIIMCLSSTDKSELLKIWEEIFCKEAEEHSATLGALR 455

Query: 331  SRYGTK 314
              YG K
Sbjct: 456  VPYGLK 461


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
            vinifera]
          Length = 474

 Score =  462 bits (1190), Expect = e-127
 Identities = 263/483 (54%), Positives = 326/483 (67%), Gaps = 8/483 (1%)
 Frame = -3

Query: 1735 MAT-VPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNAS 1559
            MAT  PSKH+RD   DF+G L +LQDWELS K+KDKK++  AE K      G     ++S
Sbjct: 1    MATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVK--HSS 58

Query: 1558 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1379
            + S S  V+ +    +       S  RQ++Y + ++A+SR+SS   ++ES+ DA SEKEL
Sbjct: 59   KLSSSPGVSLRLGQSR-------SDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKEL 111

Query: 1378 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1199
            GNE+FKQ+KF EAIDCYSRSIAL PTAVAYANRAM+YIKIKRF+EAE+DC EALNLDDRY
Sbjct: 112  GNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRY 171

Query: 1198 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1019
            IKAYSRR+TARKELGK KE+ +DAEFALRLEPQNQEIKKQYA+ KSL +K+IL++ASGAL
Sbjct: 172  IKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGAL 231

Query: 1018 AGSVEG-ARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEI 842
              SV+G  + G S V+ N     ++S+S+SS     A I +      N      ET  + 
Sbjct: 232  KSSVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKG 291

Query: 841  EINSMRSNG----SDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPP 674
              N  + NG    +  +SG +   +  K  ++E++ S+Q               KNI  P
Sbjct: 292  TGNRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAP 351

Query: 673  KSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDM 494
             SAYQFE+SWRGL GDH LQ   LK  SP ALP IFKNALSAPIL+DII+CIATFF+ +M
Sbjct: 352  NSAYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEM 411

Query: 493  ALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYG 320
             L V++L NLTKI RFDMIIMCL S DK D+ KIWDEVF    T   YA+ LG LR RY 
Sbjct: 412  DLAVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYC 471

Query: 319  TKQ 311
             KQ
Sbjct: 472  FKQ 474


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  462 bits (1190), Expect = e-127
 Identities = 263/483 (54%), Positives = 326/483 (67%), Gaps = 8/483 (1%)
 Frame = -3

Query: 1735 MAT-VPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNAS 1559
            MAT  PSKH+RD   DF+G L +LQDWELS K+KDKK++  AE K      G     ++S
Sbjct: 624  MATRFPSKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVK--HSS 681

Query: 1558 RFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1379
            + S S  V+ +    +       S  RQ++Y + ++A+SR+SS   ++ES+ DA SEKEL
Sbjct: 682  KLSSSPGVSLRLGQSR-------SDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKEL 734

Query: 1378 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1199
            GNE+FKQ+KF EAIDCYSRSIAL PTAVAYANRAM+YIKIKRF+EAE+DC EALNLDDRY
Sbjct: 735  GNEYFKQRKFKEAIDCYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRY 794

Query: 1198 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1019
            IKAYSRR+TARKELGK KE+ +DAEFALRLEPQNQEIKKQYA+ KSL +K+IL++ASGAL
Sbjct: 795  IKAYSRRATARKELGKFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGAL 854

Query: 1018 AGSVEG-ARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEI 842
              SV+G  + G S V+ N     ++S+S+SS     A I +      N      ET  + 
Sbjct: 855  KSSVQGLQKVGKSVVEVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKG 914

Query: 841  EINSMRSNG----SDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPP 674
              N  + NG    +  +SG +   +  K  ++E++ S+Q               KNI  P
Sbjct: 915  TGNRSKENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAP 974

Query: 673  KSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDM 494
             SAYQFE+SWRGL GDH LQ   LK  SP ALP IFKNALSAPIL+DII+CIATFF+ +M
Sbjct: 975  NSAYQFEVSWRGLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEM 1034

Query: 493  ALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYG 320
             L V++L NLTKI RFDMIIMCL S DK D+ KIWDEVF    T   YA+ LG LR RY 
Sbjct: 1035 DLAVKFLDNLTKISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYC 1094

Query: 319  TKQ 311
             KQ
Sbjct: 1095 FKQ 1097


>gb|EOY11660.1| Tetratricopeptide repeat-like superfamily protein, putative isoform 1
            [Theobroma cacao]
          Length = 468

 Score =  458 bits (1178), Expect = e-126
 Identities = 260/486 (53%), Positives = 331/486 (68%), Gaps = 16/486 (3%)
 Frame = -3

Query: 1720 SKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASRFSDSA 1541
            SKHSRD   DF+G LNNLQDWELS K+KDK ++  A  K +L              ++  
Sbjct: 3    SKHSRDQALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQLT-------------NEKG 49

Query: 1540 RVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELGNEFFK 1361
            R  GK ++       +T++ RQYDYL+ Y+  + LSS   ++E++ DA SEKELGNE+FK
Sbjct: 50   RPTGKSSL----IDSSTTSSRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFK 105

Query: 1360 QKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYIKAYSR 1181
            QKKF EAIDCYSRSI LSPTAVA+ANRAM+Y+KIK+FQEAE+DCTEALNLDDRYIKAYSR
Sbjct: 106  QKKFKEAIDCYSRSIGLSPTAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSR 165

Query: 1180 RSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALAGSVEG 1001
            R+TARKELGKLKES +D EFALRLEP NQEIKKQ+A+ KSL +K+IL++ASG L  S++ 
Sbjct: 166  RATARKELGKLKESIEDTEFALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQE 225

Query: 1000 ARP-GTSEVDKNKFVPKLQSVSTSSPAGKVAEI------LEDHPKGNNIREVAAETSMEI 842
            A+  G SE  +N     + S S S+    VA +      + ++ K     E  + TS  I
Sbjct: 226  AQEVGKSETKENGL--GMHSASNSTQRTGVATVQGYQTKVSEYDKQKK-PEKGSVTSEGI 282

Query: 841  ----EINSMRSNGSDADSGSKTAKTIPKNS---KQELRPSVQXXXXXXXXXXXXXXXKNI 683
                 +   R +G+  DSG    ++I KN+   K EL+ SVQ               KNI
Sbjct: 283  GDRNTLAGSRKDGTQLDSGIVGLESIKKNNRTRKPELKASVQELASLAATRAMAEAAKNI 342

Query: 682  VPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFM 503
             PP +AYQFE+SWR LSGD  LQ  LLKVTSP+ALP IFKNALSA +LVDII+C+ATFF 
Sbjct: 343  SPPNTAYQFEVSWRALSGDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFR 402

Query: 502  EDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRS 329
            E++ L ++YL+NLTK+PRFDM+IMCL S +KAD+ K+WD+VF    T  ++AEIL NLRS
Sbjct: 403  EEVDLAIKYLENLTKVPRFDMLIMCLSSTEKADLLKVWDDVFCNEATPIEWAEILDNLRS 462

Query: 328  RYGTKQ 311
             Y  K+
Sbjct: 463  VYCLKR 468


>ref|XP_002330255.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  435 bits (1119), Expect = e-119
 Identities = 251/489 (51%), Positives = 317/489 (64%), Gaps = 15/489 (3%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VP KH RD   DF+G LN+LQDWEL  KD DKK++                    SR
Sbjct: 1    MARVPGKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMK------------------KKSR 41

Query: 1555 FSDSARVNGKQTMGKTPSSDNT-STVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1379
             SD       ++ GKT ++D++ S   QY+Y + + A++RLSS   + E  VDA +EKEL
Sbjct: 42   ASDVKIGEDGRSKGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKEL 101

Query: 1378 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKR----FQEAENDCTEALNL 1211
            GNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRAM+Y+KIKR    F+EAE+DCTEALNL
Sbjct: 102  GNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNL 161

Query: 1210 DDRYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQK------ 1049
            DDRYIKAYSRR+TARKELGKLKES +D+EFAL+LEP NQEIKKQYA+ KSL +K      
Sbjct: 162  DDRYIKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLM 221

Query: 1048 -DILKRASGALAGSVEGARPG-TSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNI 875
             +IL++ASG L  S++G + G  SE   N       S++T    G  A   ++  K N  
Sbjct: 222  LEILQKASGTLRSSLQGTQQGGRSEASVNGHAVHPVSIATQK-TGVSASKKDNTKKNNRT 280

Query: 874  REVAAETSMEIEINSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXX 695
            R    +TS+ IE+ S  ++ + A++                                   
Sbjct: 281  RRQELKTSV-IELASQAASRAMAEAAK--------------------------------- 306

Query: 694  XKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIA 515
              NI PP SAYQFE+SW+G SGD  LQ  LLKVTSP+ALP IFKNALS PIL+DII+C+A
Sbjct: 307  --NITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSALPQIFKNALSVPILIDIIKCVA 364

Query: 514  TFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILG 341
            +FF++DM   V+YL+NLTK+PRFDM+IMCL S D +D+ K+WD VF   +T  +YAEIL 
Sbjct: 365  SFFIDDMDFAVKYLENLTKVPRFDMLIMCLSSTDTSDLLKMWDGVFCSASTPIEYAEILD 424

Query: 340  NLRSRYGTK 314
            NLRS+Y  K
Sbjct: 425  NLRSKYCPK 433


>ref|XP_006382392.1| hypothetical protein POPTR_0005s01710g [Populus trichocarpa]
            gi|550337752|gb|ERP60189.1| hypothetical protein
            POPTR_0005s01710g [Populus trichocarpa]
          Length = 462

 Score =  432 bits (1111), Expect = e-118
 Identities = 250/492 (50%), Positives = 321/492 (65%), Gaps = 18/492 (3%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA VP KH RD             DWEL  KD DKK++                    SR
Sbjct: 1    MARVPGKHGRD----------QALDWEL-LKDTDKKMK------------------KKSR 31

Query: 1555 FSDSARVNGKQTMGKTPSSDNT-STVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKEL 1379
             SD       ++ GKT ++D++ S   QY+Y + + A++RLSS   + E  VDA +EKEL
Sbjct: 32   ASDVKIGEDGRSEGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKEL 91

Query: 1378 GNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRY 1199
            GNE+FKQKKFNEAI+CYSRSIALSPTAVAYANRAM+Y+KIKRF+EAE+DCTEALNLDDRY
Sbjct: 92   GNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRY 151

Query: 1198 IKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGAL 1019
            IKAYSRR+TARKELGKLKES +D+EFAL+LEP NQEIKKQYA+ KSL +K+IL++ASG L
Sbjct: 152  IKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTL 211

Query: 1018 AGSVEGARP-GTSEVDKNKFVPKLQSVST-----SSPAGKVAEILEDHPKGNNIREVAAE 857
              S++G +  G SE   N       S++T     S+      ++ ++   GNN+  V   
Sbjct: 212  RSSLQGTQQGGRSEASVNGHAVHPVSIATQKTGVSASKKDNTKLEQEENDGNNL--VKKS 269

Query: 856  TSMEIEINSMRSNGSDADSG------SKTAKTIPKNS---KQELRPSVQXXXXXXXXXXX 704
              ++   N  +S+G   +        S + +++ KN+   +QEL+ SV            
Sbjct: 270  VHVKELRNRSKSDGHVGNDSPANATPSSSVESVQKNNRTRRQELKTSVIELASQAASRAM 329

Query: 703  XXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIR 524
                KNI PP SAYQFE+SW+G SGD  LQ  LLKVTSP+ALP IFKNALS PIL+DII+
Sbjct: 330  AEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSALPQIFKNALSVPILIDIIK 389

Query: 523  CIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAE 350
            C+A+FF +DM   V+YL+NLTK+PRFDM+IMCL S D +D+ K+WD VF   +T  +YAE
Sbjct: 390  CVASFFNDDMDFAVKYLENLTKVPRFDMLIMCLSSTDTSDLLKMWDGVFCSASTPIEYAE 449

Query: 349  ILGNLRSRYGTK 314
            IL NLRS+Y  K
Sbjct: 450  ILDNLRSKYCPK 461


>ref|NP_176039.2| carboxylate clamp-tetratricopeptide repeat protein [Arabidopsis
            thaliana] gi|53828529|gb|AAU94374.1| At1g56440
            [Arabidopsis thaliana] gi|59958350|gb|AAX12885.1|
            At1g56440 [Arabidopsis thaliana]
            gi|110743110|dbj|BAE99447.1| hypothetical protein
            [Arabidopsis thaliana] gi|332195274|gb|AEE33395.1|
            carboxylate clamp-tetratricopeptide repeat [Arabidopsis
            thaliana]
          Length = 476

 Score =  432 bits (1110), Expect = e-118
 Identities = 252/508 (49%), Positives = 328/508 (64%), Gaps = 33/508 (6%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  PSKH RD  QDF+G  N+LQDWELS KDKDKK++             Q   N+++ 
Sbjct: 1    MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIK-------------QQPANSSNP 47

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
             S++ R +G    GK            YD+ K+Y ++  LSS +   ES++D++SEKE G
Sbjct: 48   SSETFRPSGS---GK------------YDFAKKYRSIRDLSSSLIG-ESLLDSSSEKEQG 91

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NEFFKQKKFNEAIDCYSRSIALSP AV YANRAM+Y+KIKR++EAE DCTEALNLDDRYI
Sbjct: 92   NEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEVDCTEALNLDDRYI 151

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARKELG +KE+ +DAEFALRLEP++QE+KKQYAD KSLL+K+I+++A+GA+ 
Sbjct: 152  KAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSLLEKEIIEKATGAMQ 211

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILED---------HPKGNNI---- 875
             + +     TS +DK    PK +   TS P   VA+   D            G  +    
Sbjct: 212  STAQELLK-TSGLDKKIQKPKTE--MTSKPVTLVAKTNRDIVQPVLGSNESSGKKLIENI 268

Query: 874  --REVAAETSMEI----EINSMRSNGSDADSGSKTAKTIPKNSKQ------------ELR 749
               E + E SM+I    EI   +     + S  K AK   +N  Q            EL+
Sbjct: 269  QPEEKSKEGSMKIPAITEILDSKKVTPGSQSYEKEAKPSDRNGTQPSGPENQVSKQLELK 328

Query: 748  PSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGI 569
            PSVQ               KNI  PKSAY+FE SWR  SGD  L+++LLKVT+P++LP I
Sbjct: 329  PSVQELAAHAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQI 388

Query: 568  FKNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIW 389
            FKNAL++P+LVDII+C+A+FF EDM L V+Y++NLTK+PRF+M++MCL S +K ++ KIW
Sbjct: 389  FKNALTSPVLVDIIKCVASFFTEDMDLAVKYIENLTKVPRFNMLVMCLTSTEKNELLKIW 448

Query: 388  DEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            ++VF    T  +YAE+L  LRSRY  KQ
Sbjct: 449  EDVFCNKATPMEYAEVLDKLRSRYCLKQ 476


>ref|XP_006302207.1| hypothetical protein CARUB_v10020218mg [Capsella rubella]
            gi|482570917|gb|EOA35105.1| hypothetical protein
            CARUB_v10020218mg [Capsella rubella]
          Length = 478

 Score =  430 bits (1105), Expect = e-117
 Identities = 244/509 (47%), Positives = 321/509 (63%), Gaps = 34/509 (6%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  P+KH RD  QDF+G LN+LQDWELS KDKDKK++          +P   S  N+ +
Sbjct: 1    MARSPNKHGRDQTQDFQGFLNDLQDWELSLKDKDKKIK---------QKPSNSSNLNSEK 51

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
            F  S                      QYD++K Y ++S LSS +   ES++D++SEKE G
Sbjct: 52   FKPSGS-------------------GQYDFVKNYSSISDLSSSLIG-ESLLDSSSEKEQG 91

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NEFFKQKKFNEAIDCYSRS+ALS  AVAYANRAM+Y+KIKR++EAE DCTEALNLDDRYI
Sbjct: 92   NEFFKQKKFNEAIDCYSRSLALSANAVAYANRAMAYLKIKRYREAEVDCTEALNLDDRYI 151

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARKELG +KE+ +DAEFALRLEP ++E+KKQYA+ KSLL+K+I+++A+GA+ 
Sbjct: 152  KAYSRRATARKELGMIKEAKEDAEFALRLEPASEELKKQYANIKSLLEKEIVEKATGAMQ 211

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQ--------------------SVSTSSPAGKVAEILED 896
             + +     T+ +DK   +PK Q                    SV   S   K+ E ++ 
Sbjct: 212  STAQELLK-TAGLDKKTKLPKTQVNLKPVTLGVKTNSDKARPDSVRKESLGKKLIENVQP 270

Query: 895  HPKGNNIREVAAETSMEIE------------INSMRSNGSDADSGSKTAKTIPKNSKQEL 752
             P+    +E + +TS   E                    S+ +    + +  P + K EL
Sbjct: 271  EPQ-EKCKEGSKKTSAITENPDSNQVMPRSQCYGKEEKSSNRNGAQSSGQGNPVSKKLEL 329

Query: 751  RPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPG 572
            +PSVQ               KNI  PKSAY+FE SWR  SGD  LQT+LLKV SP +LP 
Sbjct: 330  KPSVQELAAHAASLAMVEVSKNIKAPKSAYEFENSWRSFSGDRALQTQLLKVMSPNSLPQ 389

Query: 571  IFKNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKI 392
            IFKNAL++P+LVDII+C+A FF EDM L V+Y++NLTK+PRF+M++MCL S +K ++ KI
Sbjct: 390  IFKNALTSPVLVDIIKCVAVFFTEDMDLAVKYIENLTKVPRFNMLVMCLTSTEKNELMKI 449

Query: 391  WDEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            WD+VF    T  +YAE+L  L+SRY  KQ
Sbjct: 450  WDDVFCDKATPMEYAEVLDKLKSRYCLKQ 478


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
            sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
            polymerase II-associated protein 3-like [Cucumis sativus]
          Length = 458

 Score =  429 bits (1104), Expect = e-117
 Identities = 247/491 (50%), Positives = 320/491 (65%), Gaps = 16/491 (3%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA   +KH RD   DF+G LN+LQDWE+SFK KDKKL+  A GK K DR           
Sbjct: 1    MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRR---------- 50

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
                                 T      DY+K+Y+A++RLS    ++ S VDA SEKE G
Sbjct: 51   --------------------QTEKASAADYMKQYDAVNRLSRNFQTEGSFVDAASEKEQG 90

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NE+FKQKKF EAIDCYSRSIALSPTAVA+ANRAM+Y+KI+RFQEAE+DCTEALNLDDRYI
Sbjct: 91   NEYFKQKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFQEAEDDCTEALNLDDRYI 150

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARKELGK KE+ +DAEFA RLEP NQEIKKQ+AD ++ + K IL++ASGA  
Sbjct: 151  KAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHADLRAFVGKAILEKASGASR 210

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQSVSTS-SPAGKVA--EILEDHPKGNNIR-----EVAA 860
             S +  +    + D +  +  +  VS+S S  G +A  E +E++  GN ++     E + 
Sbjct: 211  SSTKNKKT-LKKSDSDAKIQDIPPVSSSTSRTGLLAARERVEENGGGNAVKTSARLEESE 269

Query: 859  ETSMEIEINSMR--SNGSDADSGSKTAKT----IPKNSKQELRPSVQXXXXXXXXXXXXX 698
            +TS   EI S +  +NG   DS S  +      +P+  KQEL+ SV              
Sbjct: 270  DTSSGAEITSKKVATNGFHKDSSSYLSALERDHLPR--KQELKASVYELASQAASRSMVE 327

Query: 697  XXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCI 518
              KNI+ P +AYQFE+SWRG SGD  LQ RLLK  SPA LP IFK+AL+APIL+DI++C+
Sbjct: 328  AAKNIIAPTTAYQFEVSWRGFSGDQALQARLLKTISPAKLPQIFKDALTAPILIDIVKCV 387

Query: 517  ATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEIL 344
            ATFF+E+ AL + +L+NL  +PRF +++MCL S++K D+ KIWDEVF       +YAE+L
Sbjct: 388  ATFFIEEPALAISFLENLVNVPRFSILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEML 447

Query: 343  GNLRSRYGTKQ 311
             +LRS+Y  KQ
Sbjct: 448  DSLRSKYFLKQ 458


>ref|NP_001185250.1| carboxylate clamp-tetratricopeptide repeat protein [Arabidopsis
            thaliana] gi|332195275|gb|AEE33396.1| carboxylate
            clamp-tetratricopeptide repeat [Arabidopsis thaliana]
          Length = 494

 Score =  427 bits (1097), Expect = e-117
 Identities = 250/524 (47%), Positives = 330/524 (62%), Gaps = 49/524 (9%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  PSKH RD  QDF+G  N+LQDWELS KDKDKK++             Q   N+++ 
Sbjct: 1    MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIK-------------QQPANSSNP 47

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
             S++ R +G    GK            YD+ K+Y ++  LSS +   ES++D++SEKE G
Sbjct: 48   SSETFRPSGS---GK------------YDFAKKYRSIRDLSSSLIG-ESLLDSSSEKEQG 91

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NEFFKQKKFNEAIDCYSRSIALSP AV YANRAM+Y+KIKR++EAE DCTEALNLDDRYI
Sbjct: 92   NEFFKQKKFNEAIDCYSRSIALSPNAVTYANRAMAYLKIKRYREAEVDCTEALNLDDRYI 151

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARKELG +KE+ +DAEFALRLEP++QE+KKQYAD KSLL+K+I+++A+GA+ 
Sbjct: 152  KAYSRRATARKELGMIKEAKEDAEFALRLEPESQELKKQYADIKSLLEKEIIEKATGAMQ 211

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQSVS--------------------TSSPAGKVAEILED 896
             + +     TS +DK    PK +  S                      S   K+ E ++ 
Sbjct: 212  STAQELLK-TSGLDKKIQKPKTEMTSKPVTLVAKTNRDIVQPVLGSNESSGKKLIENIQP 270

Query: 895  HPKGN-----------NIREVAAETSMEI----EINSMRSNGSDADSGSKTAKTIPKNSK 761
              + N            ++E + E SM+I    EI   +     + S  K AK   +N  
Sbjct: 271  EHRWNFRELISLYLSCYLQEKSKEGSMKIPAITEILDSKKVTPGSQSYEKEAKPSDRNGT 330

Query: 760  Q------------ELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDL 617
            Q            EL+PSVQ               KNI  PKSAY+FE SWR  SGD  L
Sbjct: 331  QPSGPENQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSAL 390

Query: 616  QTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMI 437
            +++LLKVT+P++LP IFKNAL++P+LVDII+C+A+FF EDM L V+Y++NLTK+PRF+M+
Sbjct: 391  RSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFTEDMDLAVKYIENLTKVPRFNML 450

Query: 436  IMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            +MCL S +K ++ KIW++VF    T  +YAE+L  LRSRY  KQ
Sbjct: 451  VMCLTSTEKNELLKIWEDVFCNKATPMEYAEVLDKLRSRYCLKQ 494


>ref|XP_006392426.1| hypothetical protein EUTSA_v10023436mg [Eutrema salsugineum]
            gi|557088932|gb|ESQ29712.1| hypothetical protein
            EUTSA_v10023436mg [Eutrema salsugineum]
          Length = 473

 Score =  422 bits (1084), Expect = e-115
 Identities = 241/507 (47%), Positives = 321/507 (63%), Gaps = 32/507 (6%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  PSKH RD  QDF+G LN+LQDWELS KDKDKK++                +N ++ 
Sbjct: 1    MARSPSKHGRDQTQDFQGFLNDLQDWELSLKDKDKKIK----------------QNLSNP 44

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
             S+  R +G                 QYD++K+Y  +S LSS     ES +DANSEKE G
Sbjct: 45   TSEKFRPSGSG---------------QYDFVKKYGPMSGLSSSFADDESPLDANSEKEQG 89

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NE+FKQKKFNEAIDCYSRSIALSP AVA+ANRAM+Y+KIKR++EAE DCTEALNLDDRY 
Sbjct: 90   NEYFKQKKFNEAIDCYSRSIALSPNAVAFANRAMAYLKIKRYREAEIDCTEALNLDDRYT 149

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARK LG +KE+ +DAEFALRLEPQ+QE++KQYAD KSLL+K+I+++ASGA+ 
Sbjct: 150  KAYSRRATARKALGMVKEAMEDAEFALRLEPQSQELQKQYADIKSLLEKEIIEKASGAMQ 209

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQ-------------------SVSTSSPAGKVAEIL--- 902
             + +     T+ +DK   +P                      S S  S   K+ E +   
Sbjct: 210  STAQELLK-TAGLDKKAKIPNTDTKKPVTLVAKTNGDMVRPVSRSNESSGKKLIESVDPE 268

Query: 901  EDHPKGNNIREVAAETSMEIEINSM--------RSNGSDADSGSKTAKTIPKNSKQELRP 746
            E H +G+       E     ++  +        +S+G +    S+    +  ++K EL+P
Sbjct: 269  EKHKEGSKKISAITENVDNKKVTPISQSYEKEAKSSGGNVTQPSEQVNQV--STKLELKP 326

Query: 745  SVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIF 566
            SVQ               KNI  PKSAY+FE +WR  SGD  LQ +LLKV +P++LP IF
Sbjct: 327  SVQELATRAASLAMSEVTKNIKAPKSAYEFENTWRSFSGDRALQKQLLKVMTPSSLPQIF 386

Query: 565  KNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWD 386
            KNAL++P+LVDII+C+A+ F EDM L V+Y++NLTK+PRF+M++MCL S +K ++ KIW+
Sbjct: 387  KNALTSPVLVDIIKCVASIFTEDMDLAVKYIENLTKVPRFNMLVMCLTSTEKNELLKIWE 446

Query: 385  EVF-SKGT-TDYAEILGNLRSRYGTKQ 311
            +VF SK T  +YAE+L  LR +Y  KQ
Sbjct: 447  DVFCSKATPMEYAEVLDKLRLKYCLKQ 473


>ref|XP_004302236.1| PREDICTED: RNA polymerase II-associated protein 3-like [Fragaria
            vesca subsp. vesca]
          Length = 407

 Score =  421 bits (1082), Expect = e-115
 Identities = 244/477 (51%), Positives = 299/477 (62%), Gaps = 2/477 (0%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  PSKH RD   DF+G L++LQDWELS KDKDKK+R           P QP++     
Sbjct: 1    MARAPSKHGRDQALDFQGFLSDLQDWELSLKDKDKKMR-----------PQQPNK----- 44

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
                          + P S +  T     Y   YE ++ +SS   S++ + DA SEK+LG
Sbjct: 45   --------------EAPKSRDFGTS---SYSTNYEPMNTVSSSFTSEDGLPDAASEKDLG 87

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NE+FKQKKF EAIDCYSRSIAL+PTAVA+ANRAMSYIKIKRFQEAENDCTEALNLDDRYI
Sbjct: 88   NEYFKQKKFKEAIDCYSRSIALTPTAVAFANRAMSYIKIKRFQEAENDCTEALNLDDRYI 147

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALA 1016
            KAYSRR+TARKELGKLKES +DAEFALRLEP NQEIKKQYA+ KSL +K IL++ SGA+ 
Sbjct: 148  KAYSRRATARKELGKLKESIEDAEFALRLEPHNQEIKKQYAEAKSLYEKGILQKVSGAIK 207

Query: 1015 GSVEGARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEI 836
                      SE DK K      +V+                 G++I+ V++ T      
Sbjct: 208  ---------ISEQDKQKVEKSGTTVN-----------------GHSIQPVSSTTQR---- 237

Query: 835  NSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQF 656
                   ++  +     K I  N KQ  + SVQ               +NI PP SAYQF
Sbjct: 238  -------TETTAVGDHTKKINTNGKQASKLSVQELASRAASRAKALAAENITPPSSAYQF 290

Query: 655  EMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVEY 476
            E SWRGLSGD  LQ +LLK  SP+ALP IFKNAL+  ILVDI++C+ TFF+++M L V  
Sbjct: 291  EASWRGLSGDRALQAKLLKAISPSALPQIFKNALTVHILVDILKCVTTFFIDEMDLAVSV 350

Query: 475  LQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            L+NLTK+PRFD +IM L S DKAD+ KIWDEVF    T  ++AE L NLR++Y  K+
Sbjct: 351  LENLTKVPRFDTLIMFLSSNDKADLAKIWDEVFYNEATPIEFAEKLDNLRAKYCLKR 407


>ref|XP_002318949.1| predicted protein [Populus trichocarpa]
          Length = 471

 Score =  421 bits (1081), Expect = e-115
 Identities = 243/507 (47%), Positives = 311/507 (61%), Gaps = 33/507 (6%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASR 1556
            MA  P KH RD   DF+G LN+LQDWEL  KD DKK++                      
Sbjct: 1    MARAPGKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMK---------------------- 37

Query: 1555 FSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELG 1376
                     K++ GKT + D +S+   YD+ + ++A++RLS+     ES VDA +EKELG
Sbjct: 38   ---------KKSTGKTSAVDFSSSSGMYDHARNFDAINRLSNSFAIDESTVDATTEKELG 88

Query: 1375 NEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYI 1196
            NE+FKQKK+ EAI+CYSRSIALSPTAVAYANRAM+Y+KIKR  +AE+DCTEALNLDDRYI
Sbjct: 89   NEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYLKIKR--QAEDDCTEALNLDDRYI 146

Query: 1195 KAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKD---------- 1046
            KAYSRR+T RKELGKLKES +D+EFAL+LEP NQEIKKQYA+ KSL +K           
Sbjct: 147  KAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDSTICCYSG 206

Query: 1045 --------ILKRASGALAGSVEGARPG-TSEVDKNKFVPKLQSVSTSSPAGKVAEILEDH 893
                     + +AS +L  S++GA+ G  SE   N       S  T       ++  +D 
Sbjct: 207  CYISLLQFFVTKASESLRSSLQGAQKGGRSEASVNGHAVHPVSNVTQRTGASASQ--KDK 264

Query: 892  PKGNNIREVAAETSMEIEINSMRSNGSDADSG------------SKTAKTIPKNSKQELR 749
             K N+   V  ++    EI +  +       G            S  A++I    +QEL+
Sbjct: 265  AKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQLGNDSRANAIPSSNAESIQVTGRQELK 324

Query: 748  PSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGI 569
             SV+               KNI PP SAYQFE+SWRG SGD  LQ  LLKV +P+ALP I
Sbjct: 325  ASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQAHLLKVVTPSALPQI 384

Query: 568  FKNALSAPILVDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIW 389
            FKNALS  IL+DII+C+++FF++DM L V+YL+NLT++PRFD++IMCLPS DKAD+ K+W
Sbjct: 385  FKNALSVTILIDIIKCVSSFFIDDMDLAVKYLENLTEVPRFDILIMCLPSTDKADLLKMW 444

Query: 388  DEVFSKGTT--DYAEILGNLRSRYGTK 314
            DEVF    T   YAEIL  +RSRY  K
Sbjct: 445  DEVFCSEATPIKYAEILDKMRSRYCPK 471


>gb|EXB53029.1| RNA polymerase II-associated protein 3 [Morus notabilis]
          Length = 450

 Score =  417 bits (1073), Expect = e-114
 Identities = 243/498 (48%), Positives = 316/498 (63%), Gaps = 23/498 (4%)
 Frame = -3

Query: 1735 MATVPSKHSRDPPQDFEGLLNNLQDWELSF--KDKDKKLRLDAEGKGKLDRPGQPSRNNA 1562
            MA  P+KH RD    F+G LN+LQDWE S   KDKDKK++  A  KG        S +++
Sbjct: 1    MARAPTKHGRDEALAFQGFLNDLQDWEFSLEDKDKDKKMKAQASDKGI-------SVSSS 53

Query: 1561 SRFSDSARVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKE 1382
             +  ++ +   ++  GK+ + +  S+   YDY ++Y+A++++SS   S++S  DA SEKE
Sbjct: 54   KKIGEAGK--DRKAAGKSSTFEYLSSSMPYDYSRKYDAINQVSSSSISEDSYTDAASEKE 111

Query: 1381 LGNEFFKQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKR----------------- 1253
            LGNE+FKQKKF EAIDCYSRSIALS TAVAYANRAM+Y+K+KR                 
Sbjct: 112  LGNEYFKQKKFKEAIDCYSRSIALSSTAVAYANRAMAYLKLKRQLLPYLIFFCKSIFLIR 171

Query: 1252 FQEAENDCTEALNLDDRYIKAYSRRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYA 1073
            FQEAE DCTEALN+DDRYIKAYSRR+TARKELGKLKE  +DAEFALRLEP NQEIKKQY+
Sbjct: 172  FQEAEGDCTEALNMDDRYIKAYSRRATARKELGKLKECIEDAEFALRLEPNNQEIKKQYS 231

Query: 1072 DCKSLLQKDILKRASGALAGSVEGARPGTSEVDK--NKFVPKLQSVSTSSPAGKVAEILE 899
            + KSL +K IL++AS AL  +V+  +    +  K  N  +  ++S +  + A     + E
Sbjct: 232  EAKSLCEKVILQKASVALENTVQKMQKAEKKDTKVQNNGIQPVESATQKTEAA----VAE 287

Query: 898  DHPKGNNIREVAAETSMEIEINSMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXX 719
            D+ K N                             +TAK      KQE + SVQ      
Sbjct: 288  DYTKIN-----------------------------QTAK------KQEPKASVQELASRA 312

Query: 718  XXXXXXXXXKNIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPIL 539
                     KNI  P SAYQFE+SWRGLSGD  LQ  LLK  SP ALP IFKN+L+ PIL
Sbjct: 313  ASRAMNGTAKNIRSPTSAYQFEVSWRGLSGDRALQASLLKTVSPGALPQIFKNSLTVPIL 372

Query: 538  VDIIRCIATFFMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT- 362
            VDI++CIATFF+E+M + V +L+NLTK+PRFD+++MCL S D+AD+ KIW+EVF K  T 
Sbjct: 373  VDIVKCIATFFIEEMDVTVTFLENLTKVPRFDILVMCLTSKDRADLVKIWNEVFCKEATP 432

Query: 361  -DYAEILGNLRSRYGTKQ 311
             ++AE L NLRS+Y  K+
Sbjct: 433  IEHAEKLDNLRSKYCLKR 450


>ref|XP_006588434.1| PREDICTED: uncharacterized protein LOC100784528 isoform X1 [Glycine
            max]
          Length = 459

 Score =  417 bits (1073), Expect = e-114
 Identities = 247/478 (51%), Positives = 311/478 (65%), Gaps = 17/478 (3%)
 Frame = -3

Query: 1693 DFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASRFSDSARVNGKQTMG 1514
            DF+G LN+LQDWELS KDK +                Q    ++S+ + S  V  K + G
Sbjct: 2    DFQGFLNDLQDWELSRKDKTR---------------AQKENASSSQLTGSVGVE-KASKG 45

Query: 1513 KTPSSDNT-STVRQYDYLKEYEALSRL-SSGVPSQESVVDANSEKELGNEFFKQKKFNEA 1340
             T S D   ++  QYD  +  +  +R+ SS VP  E V DA SEK+LGNEFFKQKKF EA
Sbjct: 46   DTISFDRARNSPGQYDLSRINDPFNRVHSSFVP--EDVPDAVSEKDLGNEFFKQKKFKEA 103

Query: 1339 IDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYIKAYSRRSTARKE 1160
             DCYSRSIALSPTAVAYANRAM+ IK++RFQEAE+DCTEALNLDDRYIKAYSRR+TARKE
Sbjct: 104  RDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE 163

Query: 1159 LGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALAGSVEGARPGTSE 980
            LGK+KES DDA FALRLEP NQEIKKQYAD KSL +KDIL++ASGAL  +V+G +     
Sbjct: 164  LGKIKESMDDAAFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKSQKS 223

Query: 979  VDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSMEIEINSMRSNG----- 815
             +K      +Q +S S+    +AE+   H K N  + +  E+ +  +++S  +       
Sbjct: 224  EEKIN-GGSIQPISHSTQKSGLAEV-NHHKKDNEQQILVKESLLTEDVDSRETKARSRPQ 281

Query: 814  SDADSGSKTAKTIPKN--------SKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQ 659
            S    GSK   +   +        +K E++ SVQ               KN+ PP +AYQ
Sbjct: 282  SQGGDGSKEGLSASNSLEQRNHSITKLEMKASVQQLASRAASRVVAEAAKNVTPPTTAYQ 341

Query: 658  FEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVE 479
            FE+SWR  SGD  LQ RLLK  SP  LP IFKNALS+ IL++II+C+A+FF EDM L V 
Sbjct: 342  FEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSAILIEIIKCLASFFTEDMDLVVS 401

Query: 478  YLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            YL++LTK+PRFD+I+MCL S +K DI KIWDEVFS   T  +YAEIL NLRS++G  Q
Sbjct: 402  YLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSSEATPIEYAEILDNLRSKFGLGQ 459


>ref|XP_006472205.1| PREDICTED: RNA polymerase II-associated protein 3-like [Citrus
            sinensis]
          Length = 438

 Score =  417 bits (1071), Expect = e-113
 Identities = 239/476 (50%), Positives = 306/476 (64%), Gaps = 6/476 (1%)
 Frame = -3

Query: 1720 SKHSRDPPQDFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASRFSDSA 1541
            +KH+RD   DF+G LN+LQDW+LS  +KDKK++  A  K  L                  
Sbjct: 2    AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNL------------------ 43

Query: 1540 RVNGKQTMGKTPSSDNTSTVRQYDYLKEYEALSRLSSGVPSQESVVDANSEKELGNEFFK 1361
             V+      K PS    S      Y + Y+ +S +SS + ++ES  DA SEKELGNE FK
Sbjct: 44   -VSSSLKSAKKPSPSGNS------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK 96

Query: 1360 QKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYIKAYSR 1181
            QKKF EAIDCYSRSIALSPTAVAYANRAM+Y+K++RFQEAE+DCTEALNLDDRYIKAYSR
Sbjct: 97   QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156

Query: 1180 RSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALAGSVEG 1001
            R+TARKELGKLKES +D+EFALRLEPQNQEIKKQ A+ KSL +K++ ++AS  L      
Sbjct: 157  RATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL------ 210

Query: 1000 ARPGTSEVDKNKFVPKLQSVSTSSPAGKVAEI----LEDHPKGNNIREVAAETSMEIEIN 833
             + G S +  N    ++++V  ++    VAEI    +    +  N+R+   E+  E    
Sbjct: 211  EKYGKSGMKVNGH--EVRAVRNTTQKTGVAEIQDLTISKKTENKNLRD---ESKTE---G 262

Query: 832  SMRSNGSDADSGSKTAKTIPKNSKQELRPSVQXXXXXXXXXXXXXXXKNIVPPKSAYQFE 653
                +G++A   S   K   +  K  L  SVQ               KNI PPKSAY+FE
Sbjct: 263  QRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFE 322

Query: 652  MSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATFFMEDMALGVEYL 473
            +SWRG +GDH LQ RLLK  SP ALP IFKNALSA IL+DI++ +ATFF  ++ L ++YL
Sbjct: 323  VSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYL 382

Query: 472  QNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNLRSRYGTKQ 311
            + LT +PRFD++IMCL  ADKAD+ K+WDE F   +T  +YAEIL NLRS+Y   Q
Sbjct: 383  EYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438


>ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like isoform X1
            [Glycine max] gi|571565701|ref|XP_006605802.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X2
            [Glycine max] gi|571565704|ref|XP_006605803.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X3
            [Glycine max] gi|571565707|ref|XP_006605804.1| PREDICTED:
            RNA polymerase II-associated protein 3-like isoform X4
            [Glycine max]
          Length = 455

 Score =  416 bits (1068), Expect = e-113
 Identities = 255/488 (52%), Positives = 313/488 (64%), Gaps = 27/488 (5%)
 Frame = -3

Query: 1693 DFEGLLNNLQDWELSFKDKDKKLRLDAEGKGKLDRPGQPSRNNASRFSDSARVNG----- 1529
            DF G LN+LQDWE S KDK                  +P + NAS    S+R+ G     
Sbjct: 2    DFHGFLNDLQDWEFSRKDK-----------------ARPQKENAS----SSRITGSVGVE 40

Query: 1528 KQTMGKTPSSDNT-STVRQYDYLKEYEALSRL----SSGVPSQESVVDANSEKELGNEFF 1364
            K + G T S DN  ++  QYD       LSR+    SS VP  E V DA SEK+LGNEFF
Sbjct: 41   KASKGDTISFDNARNSPGQYD-------LSRINHLHSSFVP--EDVPDAASEKDLGNEFF 91

Query: 1363 KQKKFNEAIDCYSRSIALSPTAVAYANRAMSYIKIKRFQEAENDCTEALNLDDRYIKAYS 1184
            KQKKF EA DCYSRSIALSPTAVAYANRAM+ IK++RFQEAE+DCTEALNLDDRYIKAYS
Sbjct: 92   KQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYS 151

Query: 1183 RRSTARKELGKLKESFDDAEFALRLEPQNQEIKKQYADCKSLLQKDILKRASGALAGSVE 1004
            RR+TARKELGK+KES DDAEFALRLEP NQEIKKQYAD KS  +KDIL++ASG L  +V+
Sbjct: 152  RRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQ 211

Query: 1003 GA-RPGTSEVDKNKFVPKLQSVSTSSPAGKVAEILEDHPKGNNIREVAAETSM------- 848
            G  + G SE   N     +  +S S+    +AE+   H K +N R++  + S+       
Sbjct: 212  GTQKVGKSEEKVNG--DSIHPISRSTQKSGLAEV--HHHKKDNKRQILVKESLLTEDVDG 267

Query: 847  -EIEINSM-RSNGSDADSGSKTAKTIPKN-----SKQELRPSVQXXXXXXXXXXXXXXXK 689
             EI+  S  +S G D   G  +A    +      +K E++ SVQ               K
Sbjct: 268  REIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASVQQLASRAASRAMSEAAK 327

Query: 688  NIVPPKSAYQFEMSWRGLSGDHDLQTRLLKVTSPAALPGIFKNALSAPILVDIIRCIATF 509
            N+ PP +AYQFE+SWR  SGD  LQ RLLK  SP  LP IFKNALS+ IL++II+C+A+ 
Sbjct: 328  NVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSTILIEIIKCLASL 387

Query: 508  FMEDMALGVEYLQNLTKIPRFDMIIMCLPSADKADIFKIWDEVFSKGTT--DYAEILGNL 335
            F EDM L V YL++LTK+PRFD+I+MCL S +K DI KIWDEVFS   T  +YAEIL NL
Sbjct: 388  FTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDNL 447

Query: 334  RSRYGTKQ 311
            +S++G  Q
Sbjct: 448  QSKFGLGQ 455