BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00002251
         (684 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK29467.1| polyprotein-like [Solanum chilense]                    162   9e-38
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   159   8e-37
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  145   1e-32
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              144   3e-32
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   143   6e-32
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              142   1e-31
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              142   1e-31
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              142   1e-31
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         142   1e-31
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   140   4e-31
emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]   138   1e-30
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   138   2e-30
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             137   3e-30
gb|AFB73912.1| polyprotein [Citrus sinensis]                          136   5e-30
emb|CAN64589.1| hypothetical protein VITISV_008453 [Vitis vinifera]   136   7e-30
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   135   1e-29
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        134   2e-29
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   134   3e-29
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   133   4e-29
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   133   4e-29

>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  162 bits (410), Expect = 9e-38
 Identities = 94/230 (40%), Positives = 127/230 (55%), Gaps = 5/230 (2%)
 Frame = +2

Query: 5   KSRPNNRKCYECGQSGHYIRECPN-KRGN-QNFKQNEHANMASTSENVPDVFMVY---EN 169
           +S+   R CY C Q GH+ R+CPN KRG  ++  Q    N A+  +N  DV ++    E 
Sbjct: 225 RSKSKARNCYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEE 284

Query: 170 CADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGD 349
           C  +         E+EW+VD+  ++H TP + LF  Y    +G+V + N     I GIGD
Sbjct: 285 CMHLAGT------ESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGD 338

Query: 350 VCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK 529
           +C K + G  L LK+VRHVPDL  NLIS  +L+ DG E  +     ++ KG LVI K V 
Sbjct: 339 ICFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVA 398

Query: 530 RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           R  LY   AE+    Q  +NA    E +  DLWHKR+GH S KGL+IL K
Sbjct: 399 RGTLYRTNAEI---CQGELNA--AHEENSADLWHKRMGHTSEKGLQILSK 443


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  159 bits (402), Expect = 8e-37
 Identities = 92/231 (39%), Positives = 127/231 (54%), Gaps = 5/231 (2%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIRECPNKR---GNQNFKQNEH--ANMASTSENVPDVFMVYE 166
           ++S+   R CY C Q GH+ R+CPN R   G  + ++N+   A M   ++NV       E
Sbjct: 223 NRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEE 282

Query: 167 NCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIG 346
            C  ++        E+EW+VD+  + H TP + LF  Y     G+V + N     I GIG
Sbjct: 283 ECMHLSGP------ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIG 336

Query: 347 DVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAV 526
           D+C+K + G  L LK+VRHVPDL  NLIS  +L+ DG E  +     ++ KG+LVI K V
Sbjct: 337 DICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGV 396

Query: 527 KRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
            R  LY   AE+    Q  +NA    +    DLWHKR+GHMS KGL+IL K
Sbjct: 397 ARGTLYRTNAEI---CQGELNA--AQDEISVDLWHKRMGHMSEKGLQILAK 442


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  145 bits (366), Expect = 1e-32
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 6/227 (2%)
 Frame = +2

Query: 11  RPNNRKCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENV-----PDVFMVYENCA 175
           R  N KCY CG+ GH  ++C +     N K  E ++ ASTS+        D  ++Y   A
Sbjct: 224 RKTNLKCYNCGKRGHLKKDCWS-----NKKSGEKSSEASTSQGCVASTSDDGEVLYSEAA 278

Query: 176 DVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVC 355
            V++   N + +  W+VDSG T+HMTP +  F  Y+ V  G+V + N     IVGIG V 
Sbjct: 279 -VSTKGKNRLTDV-WIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVK 336

Query: 356 LKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-R 532
           +K   G + TL+ VRHV +L  NL+S   L+D G +     G++K++KG+LV+ KA K  
Sbjct: 337 IKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVA 396

Query: 533 RNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
            NLY+   +       SV    GS+ + T +WH+RLGHMS +GL++L
Sbjct: 397 ANLYMLLGDTWQMADASV--AVGSQEETTMMWHRRLGHMSERGLKVL 441


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  144 bits (363), Expect = 3e-32
 Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   SKSR-PNNRKCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVFMVYENCAD 178
           SKSR  NN KCY CG  GH  +EC N + N         +    +    D  ++Y   A 
Sbjct: 220 SKSRRKNNIKCYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAA- 278

Query: 179 VNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCL 358
             S          W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G + L
Sbjct: 279 -TSSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRL 337

Query: 359 KFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RR 535
           K   G V  ++ VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K   
Sbjct: 338 KMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITS 397

Query: 536 NLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
           NLY+   +       SV A   S+ + T +WH+RLGHMS +GL++L
Sbjct: 398 NLYMLLGDTLQEADASVAA--ASQEETTMMWHQRLGHMSERGLKVL 441


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  143 bits (360), Expect = 6e-32
 Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 4/230 (1%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIREC----PNKRGNQNFKQNEHANMASTSENVPDVFMVYEN 169
           SKS    R C+ CG+ GH+ ++C       +  Q    N  +++A ++E      ++   
Sbjct: 212 SKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLL-- 269

Query: 170 CADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGD 349
             D   V ++S+   EW++D+GC+FHMTP K  F ++KE+  G V + N     + GIG 
Sbjct: 270 ATDETLVVTDSIAN-EWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGS 328

Query: 350 VCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK 529
           + ++   G  + L +VR++P++  NLIS  +LED G   K   G++KI+KG   I K  K
Sbjct: 329 IKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQK 388

Query: 530 RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           R  LY+     E    +S   V     D+T LWH RLGHMS KG+EIL K
Sbjct: 389 RDTLYILDGVTEEGESHSSAEV----KDETALWHSRLGHMSQKGMEILVK 434


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  142 bits (358), Expect = 1e-31
 Identities = 88/229 (38%), Positives = 126/229 (55%), Gaps = 5/229 (2%)
 Frame = +2

Query: 2   SKSR-PNNRKCYECGQSGHYIRECPN--KRGNQNFKQNEHAN-MASTSENVPDVFMVYEN 169
           SKSR   N KCY CG  GH  +EC N  K G +N + +     +ASTS+   D  ++Y  
Sbjct: 220 SKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD---DGEILYSE 276

Query: 170 CADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGD 349
            A   S +        W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G 
Sbjct: 277 AA--TSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGT 334

Query: 350 VCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK 529
           + LK   G V  ++ VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K
Sbjct: 335 IRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394

Query: 530 -RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
              NLY+   +       SV A   S+ + T +WH+RLGHMS +GL++L
Sbjct: 395 ITSNLYMLLGDTLQEADASVAA--ASQEETTMMWHQRLGHMSERGLKVL 441


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  142 bits (358), Expect = 1e-31
 Identities = 88/229 (38%), Positives = 126/229 (55%), Gaps = 5/229 (2%)
 Frame = +2

Query: 2   SKSR-PNNRKCYECGQSGHYIRECPN--KRGNQNFKQNEHAN-MASTSENVPDVFMVYEN 169
           SKSR   N KCY CG  GH  +EC N  K G +N + +     +ASTS+   D  ++Y  
Sbjct: 220 SKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD---DGEILYSE 276

Query: 170 CADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGD 349
            A   S +        W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G 
Sbjct: 277 AA--TSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGT 334

Query: 350 VCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK 529
           + LK   G V  ++ VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K
Sbjct: 335 IRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394

Query: 530 -RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
              NLY+   +       SV A   S+ + T +WH+RLGHMS +GL++L
Sbjct: 395 ITSNLYMLLGDTLQEADASVAA--SSQEETTMMWHQRLGHMSERGLKVL 441


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  142 bits (358), Expect = 1e-31
 Identities = 88/229 (38%), Positives = 126/229 (55%), Gaps = 5/229 (2%)
 Frame = +2

Query: 2   SKSR-PNNRKCYECGQSGHYIRECPN--KRGNQNFKQNEHAN-MASTSENVPDVFMVYEN 169
           SKSR   N KCY CG  GH  +EC N  K G +N + +     +ASTS+   D  ++Y  
Sbjct: 220 SKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSD---DGEILYSE 276

Query: 170 CADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGD 349
            A   S +        W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G 
Sbjct: 277 AA--TSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGT 334

Query: 350 VCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK 529
           + LK   G V  ++ VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K
Sbjct: 335 IRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEK 394

Query: 530 -RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
              NLY+   +       SV A   S+ + T +WH+RLGHMS +GL++L
Sbjct: 395 ITSNLYMLLGDTLQEADASVAA--ASQEETTMMWHQRLGHMSERGLKVL 441


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  142 bits (357), Expect = 1e-31
 Identities = 85/227 (37%), Positives = 120/227 (52%), Gaps = 1/227 (0%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVFMVYENCADV 181
           S+SR  + +C+ CG+  H I++   K   +  + N+  +  +    V    +V     D 
Sbjct: 222 SRSRYKDIECHYCGKKSH-IKKYSFKWKREKKQDNKDGDTGNQVATVRADLLV---ACDD 277

Query: 182 NSVRSNSVC-ETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCL 358
           N +  N  C ET W+VDSG  +H+TP K  F++Y     G + + N  Q  + G G VCL
Sbjct: 278 NVI--NVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCL 335

Query: 359 KFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRN 538
           +  +G  L LKNV+H PD+  NLIS   L+DDG    +G G  KI KG+LV+ +  K  N
Sbjct: 336 ETSNGTKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSN 395

Query: 539 LYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           LY   + +     N V   C SE     LWHKRLGHMS KG++ L K
Sbjct: 396 LYSLQSSVSDDSVNVVEKECASE-----LWHKRLGHMSVKGIDYLAK 437


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  140 bits (353), Expect = 4e-31
 Identities = 86/237 (36%), Positives = 128/237 (54%), Gaps = 11/237 (4%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIREC---PNK---RGNQN--FKQNEHANMASTSENVPD--V 151
           SKSR   + C  C + GH I +C    NK   +GN     KQ E    A  ++N PD  +
Sbjct: 169 SKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAEL 228

Query: 152 FMVYENCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCN 331
            + Y  C   +          EWL+D+GCT+HM P +  F+ Y+ V  G+V + +   C 
Sbjct: 229 LVAYAGCVQTSD---------EWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCK 279

Query: 332 IVGIGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLV 511
           + G+G + +K   G + TL +VRH+P L  NLIS ++L+  G     G G++K+ KG+LV
Sbjct: 280 VAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLV 339

Query: 512 IFKA-VKRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           + KA +K  +LY       +++  +V AV  S ++ +DLWH RLGHMS  GL  L K
Sbjct: 340 VMKADIKNADLYHLQG---TTIVGNVAAVTDSLSN-SDLWHMRLGHMSEIGLAELSK 392


>emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]
          Length = 1302

 Score =  138 bits (348), Expect = 1e-30
 Identities = 88/237 (37%), Positives = 130/237 (54%), Gaps = 11/237 (4%)
 Frame = +2

Query: 2   SKSRPN---NRKCYECGQSGHYIRECPN-----KRGNQNFKQNEHANMAS-TSENVPDVF 154
           SKS+ N   N +C+ C   GH  + C       K+G    K+N++       +    D  
Sbjct: 82  SKSKTNKXANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTTSDFL 141

Query: 155 MVYENCADVNSVRSNSVC-ETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCN 331
           +VY++  DV     N  C ET W++DSG + H TP K  F++Y     GSV + N     
Sbjct: 142 IVYDS--DV----VNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAK 195

Query: 332 IVGIGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLV 511
            +G+GDV L+  +G +LTLKNV+H+PD+  NLIS   L+D+G    +     K+ +G++ 
Sbjct: 196 AIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSMX 255

Query: 512 IFKAVKRRNLYVCTAELESSLQNSVNAVCGSENDKT-DLWHKRLGHMSAKGLEILQK 679
           I K  K  +LY+  A +   + +S+NAV   ++D T +LWH RLGHMS KGL IL K
Sbjct: 256 IAKGNKSSSLYLMQARV---IDSSINAV---DDDSTFELWHNRLGHMSEKGLMILAK 306


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  138 bits (347), Expect = 2e-30
 Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 5/231 (2%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIREC-----PNKRGNQNFKQNEHANMASTSENVPDVFMVYE 166
           SKSR   + C+ CG+ GH+ ++C      NK+GN N ++ E +N+   + +   + +  E
Sbjct: 236 SKSR-EKKVCWVCGKEGHFKKQCYVWKEKNKKGN-NSEKGESSNVIGQAADAAALAVREE 293

Query: 167 NCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIG 346
           + AD      N   + EW++D+GC+FHMTP +  F  + E   G V +ANQ    I GIG
Sbjct: 294 SNAD------NQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIG 347

Query: 347 DVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAV 526
            + ++ D    + LKNVR+VP +  NLIS  +LED G   +   G +K++KG + + K  
Sbjct: 348 SIRIQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGK 407

Query: 527 KRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           K   LY+    + +   N+V     S  D++ +WH RL HMS + +++L K
Sbjct: 408 KVGTLYLLQGVVVTGNANAVT----SSKDESKIWHSRLCHMSQRNIDVLIK 454


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  137 bits (345), Expect = 3e-30
 Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   SKSRPNNRKCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVFMVYENCADV 181
           SKS   N  CY CG+ GH  ++C N   N N       N+ASTS++   +      C + 
Sbjct: 219 SKSSKKNLTCYNCGKKGHLKKDCWNLAQNSN----PQGNVASTSDDGSAL------CCEA 268

Query: 182 NSVRSNSVCETE-WLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCL 358
           +  R       + WL+DSG T+HMT  K  F +Y+ +  GSV   +     I+GIG + L
Sbjct: 269 SIAREGRKRFADIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKL 328

Query: 359 KFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RR 535
           K   G V T+++VRHV  L  NL+S   L++   + +  KG+MKI +G LV+ K  K   
Sbjct: 329 KMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAA 388

Query: 536 NLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEIL 673
           NLY+   E   +LQ +  +V     D T LWH++LGHMS +G++IL
Sbjct: 389 NLYMLKGE---TLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKIL 431


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  136 bits (343), Expect = 5e-30
 Identities = 85/232 (36%), Positives = 126/232 (54%), Gaps = 6/232 (2%)
 Frame = +2

Query: 2   SKSRPN-NRKCYECGQSGHYIRECPNKRGNQNFKQNEHAN----MASTSENVPDVFMVYE 166
           SKSR   N KCY CG+ GH  +EC + +  +  K+ E +N    +ASTS+   D  ++Y 
Sbjct: 220 SKSRSKKNVKCYNCGKKGHVKKECWSNQKRREGKEPESSNAQGCVASTSD---DGEILYS 276

Query: 167 NCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIG 346
               V+  R        WL+DSG T+HMT  +  F  Y+ +  GSV + N     I GIG
Sbjct: 277 EATIVSEGRKR--LSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIG 334

Query: 347 DVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAV 526
            + +K   G + T++ VRHV  L  NL+S   ++  G +     G+MKI+KG LV+ KA 
Sbjct: 335 TIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAE 394

Query: 527 K-RRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           K   NL++   E   +LQ +   V  +  + T +WH +LGHMS +GL+IL +
Sbjct: 395 KICANLFMLKGE---TLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSE 443


>emb|CAN64589.1| hypothetical protein VITISV_008453 [Vitis vinifera]
          Length = 903

 Score =  136 bits (342), Expect = 7e-30
 Identities = 86/239 (35%), Positives = 131/239 (54%), Gaps = 13/239 (5%)
 Frame = +2

Query: 2   SKSRPN---NRKCYECGQSGHYIRECPN-----KRGNQNFKQN----EHANMASTSENVP 145
           SKS+ N   N +C+ C   GH  + C       K+G    K+N    E   +A+T+ N  
Sbjct: 113 SKSKTNKFANVECHYCHLKGHIRKYCSQLKRYMKQGKVKDKKNDNDGEDDRVATTTSNF- 171

Query: 146 DVFMVYENCADVNSVRSNSVC-ETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQK 322
              +VY++  DV     N  C ET W++DS  + H TP K  F++Y     GSV + N  
Sbjct: 172 --LIVYDS--DV----VNFACQETSWVIDSSASIHATPQKDFFTSYTSSDFGSVMMGNDG 223

Query: 323 QCNIVGIGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKG 502
               +G+ DVCL+  +G +L LKNV+H+P++C NLIS + L+D+G    +     K+ +G
Sbjct: 224 SAKAIGMRDVCLETSNGTMLILKNVKHIPNICMNLISTSKLDDEGFCNIFRDSQWKLTRG 283

Query: 503 NLVIFKAVKRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           ++V+ K  KR +LY+  A +   + +S+N V   ++   +LWH RL HMS KGL IL K
Sbjct: 284 SMVVAKGKKRSSLYLMQARV---IDSSINVV--DDDITIELWHNRLSHMSEKGLMILAK 337


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  135 bits (340), Expect = 1e-29
 Identities = 86/237 (36%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
 Frame = +2

Query: 2   SKSRPN---NRKCYECGQSGHYIRECPN-----KRGNQNFKQNEHANMAS-TSENVPDVF 154
           SKS+ N   N +C+ C   GH  + C       K+G    K+N++       +  + D  
Sbjct: 195 SKSKTNKFANVECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTISDFL 254

Query: 155 MVYENCADVNSVRSNSVC-ETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCN 331
           +VY++  DV     N  C E+ W++D G + H TP K  F++Y     GSV + N     
Sbjct: 255 IVYDS--DV----VNFACQESXWVIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSAK 308

Query: 332 IVGIGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLV 511
            +G+GDV L+  +G +LTLKNV+H+PD+  NLIS   L+D+G    +     K+ +G++V
Sbjct: 309 AIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMV 368

Query: 512 IFKAVKRRNLYVCTAELESSLQNSVNAVCGSENDKT-DLWHKRLGHMSAKGLEILQK 679
           I K  K  +LY+  A +   + +S+NAV   ++D T +LWH +LGHMS KGL IL K
Sbjct: 369 IAKGNKSSSLYLMQARV---IDSSINAV---DDDSTFELWHNKLGHMSEKGLMILAK 419


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  134 bits (338), Expect = 2e-29
 Identities = 88/227 (38%), Positives = 121/227 (53%), Gaps = 4/227 (1%)
 Frame = +2

Query: 11  RPNNRKCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVFMVYENCADVNSV 190
           +   RKC+ C + GHYIR+C  K+  ++  Q +  + A  S++  D +      AD+  V
Sbjct: 230 KKKKRKCFYCRKEGHYIRDCFEKKKKES--QEKSGDAAVASDDGSDGYQ----SADL-LV 282

Query: 191 RSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGI----GDVCL 358
            SNS  + +W++DSGC+FH+ P K LF  Y+ V  G V + N   CNIVGI       CL
Sbjct: 283 ASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCL 342

Query: 359 KFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRN 538
                 + +L  VRH P L  NLIS   L+  G   K   G +++ KG  ++ K V    
Sbjct: 343 ---MELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENG 399

Query: 539 LYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGLEILQK 679
           LYV        +Q  V+AV  SE D+T LWH RLGHMS KGL+ L K
Sbjct: 400 LYVLQGS-SVPVQEGVSAV--SEEDRTKLWHLRLGHMSIKGLQELSK 443


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  134 bits (337), Expect = 3e-29
 Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
 Frame = +2

Query: 2   SKSRP--NNRKCYECGQSGHYIRECPN----KRGNQNFKQNEHANMASTSENVPDVFMVY 163
           SKS+P  N + C  C    H I EC      +R N+   +   A+ A++ ++  D  +V+
Sbjct: 221 SKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVF 280

Query: 164 ENCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVG 340
             C   +          EW++DS C+FH+   +  FS+YK V  G V  + +   C IVG
Sbjct: 281 AGCVAGHD---------EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 341 IGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFK 520
           IG V +K D G   TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K
Sbjct: 332 IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 521 A-VKRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGL-EILQKN 682
             V    LYV      +   ++  A+   E  KT+LWH RLGHMS  G+ E++++N
Sbjct: 392 GDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRN 447


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  133 bits (335), Expect = 4e-29
 Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
 Frame = +2

Query: 2   SKSRP--NNRKCYECGQSGHYIRECPN----KRGNQNFKQNEHANMASTSENVPDVFMVY 163
           SKS+P  N + C  C    H I EC      +R N+   +   A+ A++ ++  D  +V+
Sbjct: 221 SKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVF 280

Query: 164 ENCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVG 340
             C   +          EW++DS C+FH+   +  FS+YK V  G V  + +   C IVG
Sbjct: 281 AGCVAGHD---------EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 341 IGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFK 520
           IG V +K D G   TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K
Sbjct: 332 IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 521 A-VKRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGL-EILQKN 682
             +    LYV      +   ++  AV   E  KT+LWH RLGHMS  G+ E++++N
Sbjct: 392 GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRN 447


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  133 bits (335), Expect = 4e-29
 Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
 Frame = +2

Query: 2   SKSRP--NNRKCYECGQSGHYIRECPN----KRGNQNFKQNEHANMASTSENVPDVFMVY 163
           SKS+P  N + C  C    H I EC      +R N+   +   A+ A++ ++  D  +V+
Sbjct: 221 SKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVF 280

Query: 164 ENCADVNSVRSNSVCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVG 340
             C   +          EW++DS C+FH+   +  FS+YK V  G V  + +   C IVG
Sbjct: 281 AGCVAGHD---------EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVG 331

Query: 341 IGDVCLKFDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFK 520
           IG V +K D G   TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K
Sbjct: 332 IGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLK 391

Query: 521 A-VKRRNLYVCTAELESSLQNSVNAVCGSENDKTDLWHKRLGHMSAKGL-EILQKN 682
             +    LYV      +   ++  AV   E  KT+LWH RLGHMS  G+ E++++N
Sbjct: 392 GDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRN 447