BLASTX nr result
ID: Rehmannia25_contig00001909
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00001909
(742 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 280 5e-73
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 266 7e-69
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 266 7e-69
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 258 1e-66
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 258 2e-66
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 258 2e-66
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 257 2e-66
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 256 6e-66
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 256 6e-66
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 254 2e-65
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 254 3e-65
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 254 3e-65
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 251 1e-64
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 250 4e-64
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 248 1e-63
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 246 4e-63
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 246 4e-63
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 246 4e-63
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 246 4e-63
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 246 4e-63
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 280 bits (715), Expect = 5e-73
Identities = 130/211 (61%), Positives = 166/211 (78%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L++IDD+SRKVW++ +KNKS+ F KFK WK L+E QT +++K LRTDNGLEF +N F++L
Sbjct: 473 LTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSL 532
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH+TV YTPQQNG+AERMNRT+LERVR ML+SSGLSK FW EA TA +LINR
Sbjct: 533 CQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINR 592
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS L+ K P+ ++GK D+ +LKVFGC A+VH K DKLEPR+ KC+FLGYP+GVKGY
Sbjct: 593 SPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGY 652
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS 110
+LW+ + K +ISRDV FNE + TP+
Sbjct: 653 KLWIETQGKGKCIISRDVTFNEQDMSKQTPA 683
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 266 bits (679), Expect = 7e-69
Identities = 124/203 (61%), Positives = 155/203 (76%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++ IDDFSRKVWV+ +K K +VF KFK WKT++E +TGK +KTLRTDNGLEFCN FD
Sbjct: 614 VTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEF 673
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH+TV +TPQQNGVAERMN+TL++R R M +GLSK+FW EAV+TAAYL+NR
Sbjct: 674 CRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNR 733
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P+ V+SGK ++S LK+FGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 734 SPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGY 793
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
RLW + K +ISRDV F+ES
Sbjct: 794 RLWCTEDRTPKFIISRDVTFDES 816
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 266 bits (679), Expect = 7e-69
Identities = 124/203 (61%), Positives = 155/203 (76%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++ IDDFSRKVWV+ +K K +VF KFK WKT++E +TGK +KTLRTDNGLEFCN FD
Sbjct: 827 VTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEF 886
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH+TV +TPQQNGVAERMN+TL++R R M +GLSK+FW EAV+TAAYL+NR
Sbjct: 887 CRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNR 946
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P+ V+SGK ++S LK+FGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 947 SPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGY 1006
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
RLW + K +ISRDV F+ES
Sbjct: 1007 RLWCTEDRTPKFIISRDVTFDES 1029
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 258 bits (660), Expect = 1e-66
Identities = 122/203 (60%), Positives = 157/203 (77%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
+SIIDD+SR WV++MK+KS+ F+KFK WK L+ENQTGK+IK LRTDNGLEFC + FD
Sbjct: 493 VSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQF 552
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH+TV TPQQNGVAERMN+TLLER R ML+++GL +RFW EAV TA YLINR
Sbjct: 553 CKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINR 612
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
P ++ K P ++SGK D+SNLK FGC A+ H KLEPR+KK VF+GY +GVKG+
Sbjct: 613 GPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGF 672
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
R+W E ++++SR+V+F+ES
Sbjct: 673 RIWSPAEK--RVIMSRNVVFDES 693
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 258 bits (658), Expect = 2e-66
Identities = 131/246 (53%), Positives = 168/246 (68%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L+IIDD+SRKVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++
Sbjct: 507 LTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 627 SPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDDSENVH 23
+LW E G K +SR V+FNES T SLP SE P K + + +H
Sbjct: 687 KLW-NPETG-KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMH 728
Query: 22 AEIENV 5
++E+V
Sbjct: 729 MQVEHV 734
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 258 bits (658), Expect = 2e-66
Identities = 131/246 (53%), Positives = 168/246 (68%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L+IIDD+SRKVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++
Sbjct: 507 LTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 627 SPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDDSENVH 23
+LW E G K +SR V+FNES T SLP SE P K + + +H
Sbjct: 687 KLW-NPETG-KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMH 728
Query: 22 AEIENV 5
++E+V
Sbjct: 729 MQVEHV 734
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 257 bits (657), Expect = 2e-66
Identities = 130/246 (52%), Positives = 168/246 (68%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L++IDD+SRKVW + +K+K D F FKNWK +IE QT +++K LRTDNG EFC++ F++
Sbjct: 507 LTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDY 566
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINR
Sbjct: 567 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 626
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 627 SPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDDSENVH 23
+LW E G K +SR V+FNES T SLP SE P K + + +H
Sbjct: 687 KLW-NPETG-KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMH 728
Query: 22 AEIENV 5
++E+V
Sbjct: 729 MQVEHV 734
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 256 bits (654), Expect = 6e-66
Identities = 123/246 (50%), Positives = 172/246 (69%), Gaps = 2/246 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F+ FK WKT++E QT +++K LRTDNG++FC+ +F +
Sbjct: 476 MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSY 535
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL K+FW EAV TA YLINR
Sbjct: 536 CKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINR 595
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 596 SPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGY 655
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + EN
Sbjct: 656 KLWCPETK--KVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEN 713
Query: 28 VHAEIE 11
V ++
Sbjct: 714 VAINLD 719
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 256 bits (654), Expect = 6e-66
Identities = 120/203 (59%), Positives = 150/203 (73%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
+SIIDDF+RKVWV+ MK K + FEKF W L+ENQT +R+KTLRTDNGLEFCN LFD
Sbjct: 521 MSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGF 580
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH+T YTPQQNGVAERMNRT++E+VRSML+ SGL KRFW EA HT LIN+
Sbjct: 581 CESIGIHRHRTCAYTPQQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINK 640
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
+PS L + P+ +SG +S L+ +GC AFVH KLEPR+KK V +GYP GVKGY
Sbjct: 641 TPSSALNFEIPDKKWSGNPPVYSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGY 700
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
++W+ E K ++SR++IF E+
Sbjct: 701 KVWILDER--KCVVSRNIIFQEN 721
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 254 bits (650), Expect = 2e-65
Identities = 130/246 (52%), Positives = 167/246 (67%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L+IIDD+SRKVW + +K+K D F FKNWK +IE QT +++K L TDNG EFC++ F++
Sbjct: 509 LTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDY 568
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+P+TPQQNGVAERMNRT++ R R ML+ + ++KRFW EA TA YLINR
Sbjct: 569 CRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINR 628
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P V+SG D+S LKVFGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 629 SPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 688
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDDSENVH 23
+LW E G K +SR V+FNES T SLP SE P K + + +H
Sbjct: 689 KLW-NPETG-KTFMSRSVVFNESVM--FTNSLP---SEHVPEK-----------ELQRMH 730
Query: 22 AEIENV 5
++E+V
Sbjct: 731 MQVEHV 736
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 254 bits (648), Expect = 3e-65
Identities = 122/241 (50%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F+ FK WKT++E QT +++K LRTDNG+EFC+ +F +
Sbjct: 722 MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 781
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH TVP+TPQQNGVAERMNRT++ + R +L+++GL K+FW EAV TA YLINR
Sbjct: 782 CKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINR 841
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 842 SPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 901
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + E+
Sbjct: 902 KLWCPETK--KVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKED 959
Query: 28 V 26
V
Sbjct: 960 V 960
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 254 bits (648), Expect = 3e-65
Identities = 122/241 (50%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F+ FK WKT++E QT +++K LRTDNG+EFC+ +F +
Sbjct: 515 MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 574
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH TVP+TPQQNGVAERMNRT++ + R +L+++GL K+FW EAV TA YLINR
Sbjct: 575 CKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINR 634
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 635 SPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 694
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + E+
Sbjct: 695 KLWCPETK--KVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKED 752
Query: 28 V 26
V
Sbjct: 753 V 753
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 251 bits (642), Expect = 1e-64
Identities = 126/243 (51%), Positives = 164/243 (67%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L+IIDD+SRKVW + +K+K D F FK WK +IE QT K +K LRTDN EFC++ FD+
Sbjct: 508 LTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDY 567
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+PYTPQQNGVAERMNRT++ + R ML+++ ++KRFW EA +TA YLINR
Sbjct: 568 CRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINR 627
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P ++SG D+S L+VFGC A+ H +KLEPR+ KC+FLGY GVKGY
Sbjct: 628 SPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGY 687
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPSLPLCESEPAPNKVEQIPVSSNFDDSENVH 23
+LW K +SR V+FNES SLP + P + EQ VS + ++
Sbjct: 688 KLW--NPETNKTFMSRSVVFNESVM--FNDSLP-TDVIPGGSDEEQQYVSVQVEHVDDQE 742
Query: 22 AEI 14
EI
Sbjct: 743 TEI 745
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 250 bits (638), Expect = 4e-64
Identities = 118/204 (57%), Positives = 154/204 (75%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
+S IDDFS+KVWV+ +K K + + KF+ WK +ENQTGK+IK LRTDNGLEF N FDNL
Sbjct: 404 VSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEFYNTQFDNL 463
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C E GI+RH+T YTPQQNGV+ERMN+T+++ VRSMLA +G+S+ FW EA TA YLINR
Sbjct: 464 CKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSMLAETGMSQEFWAEATSTAVYLINR 523
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
+P+ + K PE V++G + D S+L+ FGC+A+VH DK PR+ K VF+GYP G+KGY
Sbjct: 524 TPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGYPCGIKGY 583
Query: 202 RLWLRGEPGFKILISRDVIFNESE 131
R+WL E K SR+V+FNE+E
Sbjct: 584 RVWLPKEG--KCTTSRNVVFNETE 605
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 248 bits (634), Expect = 1e-63
Identities = 116/203 (57%), Positives = 147/203 (72%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
L+IIDD+SRKVW + +K+K D F FK WK +IE QT K +K LRTD+G EFC++ FD+
Sbjct: 448 LTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDY 507
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI RH T+PYTPQQNGVAERMNRT++ R ML+++ ++KRFW E +TA YLINR
Sbjct: 508 CRKEGIVRHHTIPYTPQQNGVAERMNRTIISNTRCMLSNARMNKRFWAEVANTACYLINR 567
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS+PL K P V+SG D+S L+VFGC A+ H KLEPR+ KC+FLGY GVKGY
Sbjct: 568 SPSIPLNKKTPIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGY 627
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
+LW K +SR V+FNES
Sbjct: 628 KLW--NPKTNKTFMSRSVVFNES 648
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 246 bits (629), Expect = 4e-63
Identities = 120/241 (49%), Positives = 164/241 (68%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F+ FK WKT++E QT K++K LRTDNG+EFC+ +F +
Sbjct: 550 MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSY 609
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI H TVP+TPQQNGVAERMN ++ + R ML+++ L K+FW EAV T YLINR
Sbjct: 610 CKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINR 669
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS K P V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 670 SPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 729
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + EN
Sbjct: 730 KLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEN 787
Query: 28 V 26
V
Sbjct: 788 V 788
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 246 bits (629), Expect = 4e-63
Identities = 123/241 (51%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F FK WKT++E QT +++K LRTDNG+EFC+ +F +
Sbjct: 515 MTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 574
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH TVP+TPQQNGVAERMNR ++ + R ML+++GL K+FW EAV TA YLINR
Sbjct: 575 CKSEGIVRHYTVPHTPQQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINR 634
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS K K P V+SG ++S+LKVFGC A+ H KLEPR+ KC+FLGYP VKGY
Sbjct: 635 SPSYANK-KTPIEVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGY 693
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + E+
Sbjct: 694 KLWCPETK--KVVISRNVVFHESIMLHDKPSTNVPVESQEKASVQVEHLINSGHAPEKED 751
Query: 28 V 26
V
Sbjct: 752 V 752
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 246 bits (629), Expect = 4e-63
Identities = 120/241 (49%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++IIDD+SRKVW + +K+K F+ FK WKT++E QT +++K LR DNG+EFC+ +F +
Sbjct: 336 MTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRPDNGMEFCSKIFKSY 395
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI RH TVP+TPQQNGVAERMNRT++ + R ML+++GL K+FW EAV TA YLINR
Sbjct: 396 CKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINR 455
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K P V+S +S+L+VF C A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 456 SPSYAIDKKTPIEVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 515
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++I+R+V+F+ES PS +P+ E A +VE + S + + E+
Sbjct: 516 KLWCPETK--KVVINRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKED 573
Query: 28 V 26
V
Sbjct: 574 V 574
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 246 bits (629), Expect = 4e-63
Identities = 120/241 (49%), Positives = 164/241 (68%), Gaps = 2/241 (0%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
++I+DD+SRKVW + +K+K F+ FK WKT++E QT K++K LRTDNG+EFC+ +F +
Sbjct: 550 MTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSY 609
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C GI H TVP+TPQQNGVAERMN ++ + R ML+++ L K+FW EAV T YLINR
Sbjct: 610 CKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINR 669
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS K P V+SG ++S+L+VFGC A+ H KLEPR+ KC+FLGYP GVKGY
Sbjct: 670 SPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 729
Query: 202 RLWLRGEPGFKILISRDVIFNESEFPCLTPS--LPLCESEPAPNKVEQIPVSSNFDDSEN 29
+LW K++ISR+V+F+ES PS +P+ E A +VE + S + + EN
Sbjct: 730 KLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEN 787
Query: 28 V 26
V
Sbjct: 788 V 788
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 246 bits (629), Expect = 4e-63
Identities = 111/203 (54%), Positives = 158/203 (77%)
Frame = -1
Query: 742 LSIIDDFSRKVWVFLMKNKSDVFEKFKNWKTLIENQTGKRIKTLRTDNGLEFCNNLFDNL 563
+S+IDD+SRKVW++++K K EKFK WK+L+ENQ+ ++K LRTDNGLEFC+ +F+
Sbjct: 505 MSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEY 564
Query: 562 CAEFGIRRHKTVPYTPQQNGVAERMNRTLLERVRSMLASSGLSKRFWGEAVHTAAYLINR 383
C + GI+RHKTV +TPQQNG+AERMNRTL+++ R ML +S L + FW EAV+TA+YL+NR
Sbjct: 565 CQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNR 624
Query: 382 SPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKGDKLEPRSKKCVFLGYPEGVKGY 203
SPS + K PE +++GK ++ NL+VFGC A++H KLE R+ K VF+GYP+GVKGY
Sbjct: 625 SPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGY 684
Query: 202 RLWLRGEPGFKILISRDVIFNES 134
++W + + K ++SRDV+F+ES
Sbjct: 685 KIWCKDQG--KCIVSRDVVFHES 705