BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00001232
         (5030 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1345   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1340   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1340   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1340   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1340   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1337   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1315   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1314   0.0  
emb|CBI21038.3| unnamed protein product [Vitis vinifera]             1312   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1312   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1311   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1305   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1304   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1304   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1273   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1270   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1264   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1260   0.0  
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1258   0.0  
ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis...  1258   0.0  

>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1345 bits (3481), Expect = 0.0
 Identities = 654/862 (75%), Positives = 738/862 (85%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLRSR EEVN+ ALKHM SYK PV DA + L  +QKWLL
Sbjct: 336  VNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLL+R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE
Sbjct: 396  KNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQ
Sbjct: 456  GMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS +VNS+
Sbjct: 516  LRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S 
Sbjct: 636  IRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISG 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD+ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K
Sbjct: 696  LDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ ++ LQVVKGLV
Sbjct: 756  ARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGK
Sbjct: 936  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCSYDGQL GLLG
Sbjct: 996  LYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE MDP+FD L D
Sbjct: 1056 QYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPD 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAADYLARIKIR R
Sbjct: 1116 DEKNDMYERKASAWYQVTYHPHWVARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
            R +   STKPI+SLGRYL D I
Sbjct: 1176 RLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1340 bits (3469), Expect = 0.0
 Identities = 650/862 (75%), Positives = 738/862 (85%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLRS  EEVN+ ALKHM SYK PV DA + L  +QKWLL
Sbjct: 336  VNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLL+R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE
Sbjct: 396  KNPKLLDRTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQ
Sbjct: 456  GMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+
Sbjct: 516  LRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S 
Sbjct: 636  IRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISG 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K
Sbjct: 696  LDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV
Sbjct: 756  ARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGK
Sbjct: 936  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCSYDGQL GLLG
Sbjct: 996  LYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVNREEE+VTG+IWSMPKY++KKQGELKERLKHAY+TLRKEFR VFE M+P+FD L D
Sbjct: 1056 QYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPD 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAADYLARIKIR R
Sbjct: 1116 DEKNDMYERKASAWYQVTYHPHWVARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
            R +   STKPI+SLGRYL D I
Sbjct: 1176 RLQYSDSTKPINSLGRYLVDNI 1197


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1340 bits (3469), Expect = 0.0
 Identities = 652/861 (75%), Positives = 736/861 (85%)
 Frame = +2

Query: 5    NAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLN 184
            NAV+HKGI+NQHQM  +FF LLRS  EEVN  ALKHM SYK PV DA + L  +QKWLL 
Sbjct: 337  NAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLK 396

Query: 185  NPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEA 364
            NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE 
Sbjct: 397  NPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEG 456

Query: 365  MMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQL 544
            M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQL
Sbjct: 457  MRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQL 516

Query: 545  RDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKL 724
            RDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+L
Sbjct: 517  RDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSEL 576

Query: 725  PDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGT 904
            PDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG 
Sbjct: 577  PDIERNGYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGI 636

Query: 905  HLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRL 1084
             L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M++ L
Sbjct: 637  RLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGL 696

Query: 1085 DRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKA 1264
            D+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KA
Sbjct: 697  DKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKA 756

Query: 1265 RIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVA 1444
            RIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHGS+FS+ +K LQVVKGLV 
Sbjct: 757  RIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVV 816

Query: 1445 IAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDE 1624
            IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDE
Sbjct: 817  IAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDE 876

Query: 1625 NLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLSD 1804
            N+IPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNAHVVHADLS+
Sbjct: 877  NIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSE 936

Query: 1805 YGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGKL 1984
            +GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGKL
Sbjct: 937  FGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKL 996

Query: 1985 YRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLGQ 2164
            YR++KD  D   E S+      ++I YD  LEI GS +FI DAWN KCSYDGQL GLLGQ
Sbjct: 997  YRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQ 1056

Query: 2165 YKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSDD 2344
            YKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE M+P+FD L DD
Sbjct: 1057 YKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDD 1116

Query: 2345 EKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRRR 2524
            EKN MYE+KASAWYQVTYH  W+ +S ELQ+ D    TVMLSFAWIAADYLARIKIR R 
Sbjct: 1117 EKNDMYERKASAWYQVTYHPHWVARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRG 1176

Query: 2525 TENDISTKPIDSLGRYLADKI 2587
                 STKPI+SLGRYLADKI
Sbjct: 1177 LPYSDSTKPINSLGRYLADKI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1340 bits (3468), Expect = 0.0
 Identities = 653/862 (75%), Positives = 737/862 (85%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLRSR EEVN  ALKHM SYK PV DA + L  +QKWLL
Sbjct: 336  VNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE
Sbjct: 396  KNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQ
Sbjct: 456  GMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+
Sbjct: 516  LRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGM+S  LA+EVAEKL ++ +PP AYQIRYAGYKGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S 
Sbjct: 636  ILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISG 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD+ML D+D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K
Sbjct: 696  LDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV
Sbjct: 756  ARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGK
Sbjct: 936  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++KD  D   E S+      ++I YD  L I GS  FI DAWN KCSYDGQL GLLG
Sbjct: 996  LYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE MDP+FD L D
Sbjct: 1056 QYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPD 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAADYLARIKIR R
Sbjct: 1116 DEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
              +   STKPI+SLGRYL DKI
Sbjct: 1176 GLQYSDSTKPINSLGRYLVDKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1340 bits (3467), Expect = 0.0
 Identities = 651/862 (75%), Positives = 736/862 (85%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA + L  ++KWLL
Sbjct: 336  VNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE
Sbjct: 396  KNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQ
Sbjct: 456  GMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+
Sbjct: 516  LRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGM+S  LAVEVAEKL +S +PP AYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S 
Sbjct: 636  IRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISG 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD+ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K
Sbjct: 696  LDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV
Sbjct: 756  ARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SWIPM+Y   E +++ R V H DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGK
Sbjct: 936  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++KD  D   E S+       +I YD  LEI GS +FI DAWN KCSYDGQL GLLG
Sbjct: 996  LYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE M+P+FD L D
Sbjct: 1056 QYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPD 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAADYLARIKIR R
Sbjct: 1116 DEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
              +   STKPI+SLGRYL D I
Sbjct: 1176 GLQYSDSTKPINSLGRYLVDNI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1337 bits (3461), Expect = 0.0
 Identities = 650/862 (75%), Positives = 734/862 (85%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA + L  +QKWLL
Sbjct: 336  VNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLLER  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE
Sbjct: 396  KNPKLLERTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQ
Sbjct: 456  GMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+
Sbjct: 516  LRDRSAWFFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S 
Sbjct: 636  ILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISG 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR K
Sbjct: 696  LNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV
Sbjct: 756  ARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKEE Q+Y S KILGK
Sbjct: 936  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++KD  D   E S+       +I YD  LEI GS  F+ DAWNCKCSYDGQL GLLG
Sbjct: 996  LYRQVKDVCDTEGEVSAGLELVPNDIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVNREEE+VTGHIWSMPKYS+KKQGELKERLKHAY+ LRKEFR VFE MDP+FD L D
Sbjct: 1056 QYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPD 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWYQVTY+  W+ +S ELQ+ D    TVMLSFAWIAADYLARI IR R
Sbjct: 1116 DEKNDMYERKASAWYQVTYNPHWVARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
              +   STKPI+SLGRYL D I
Sbjct: 1176 GLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1315 bits (3404), Expect = 0.0
 Identities = 637/868 (73%), Positives = 728/868 (83%), Gaps = 6/868 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGI NQHQ+S+ FFDLLR++P +VN  AL+H+CSYKHPV+DA K L+ VQ+WLL
Sbjct: 336  VNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKL    ++++DIVE+RRL ITP +AYCLPPEVELSNRVLR Y++IAD+FLRVTFMDE
Sbjct: 396  KNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             + T+N N LTYY  P+ R ITSNS  Q+T +FKRVK IL +GFYLCGRKYSFLAFSSNQ
Sbjct: 456  GLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED  T V+ I+NWMGKFTNRNIAKCAARMGQCFSSTYATVEVPS +    
Sbjct: 516  LRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILD 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERN Y+FSDGIGM++  LA EVAEKL++  +PPCAYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KF SNHT LEICSWTRFQPGFLNRQI+TLLS L+V D IFW+MQ  MVS+
Sbjct: 636  IRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++M  D D+AFDVVT SC +QG+TAAIMLSAGF P+TEPHL GMLT IRAAQL  LREK
Sbjct: 696  LNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
             RIFVPSGRWLMGCLDELGVLEHGQCFIQVS PSLE  F KHGSRFSE++KKLQVVKG V
Sbjct: 756  TRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             +AKNPCLHPGD+RILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD
Sbjct: 816  VVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSKRSW+PM Y A EA++L R V H DII+FF KNMVNE+LG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGALDE CIKLAELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE+ Q+Y+SNKILG+
Sbjct: 936  EYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGR 995

Query: 1982 LYRKIK------DANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQ 2143
            LYR++K      D +D     SSE      +I YD+DLE++GS  +I DAW+ KCSYDGQ
Sbjct: 996  LYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQ 1055

Query: 2144 LIGLLGQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPE 2323
            L GLL QYKV REEE+VTGHIWSMPK +S+KQGELKERLK +Y +L+KEFR+VFE MD +
Sbjct: 1056 LKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSD 1115

Query: 2324 FDQLSDDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLAR 2503
            F+QL++DEKN++YE+KASAWYQV YH  W+ KS ELQ  D AG   MLSFAWIAADYLAR
Sbjct: 1116 FEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLAR 1175

Query: 2504 IKIRRRRTENDISTKPIDSLGRYLADKI 2587
            IKIR R  +   ++KP++SL +YLAD+I
Sbjct: 1176 IKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1314 bits (3401), Expect = 0.0
 Identities = 623/862 (72%), Positives = 727/862 (84%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGI NQHQ+S  FFDLLR++  EVN  ALKH+C+Y+ PV++A++ L+ VQ+WLL
Sbjct: 339  VNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLL 398

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NP L + P+++ D+VE+RRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE
Sbjct: 399  KNPNLFKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDE 458

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             +  +N NVL YYV P+ R ITSNS PQ+T +FKRV+ IL  GFYLCGR+YSFLAFS+NQ
Sbjct: 459  GLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQ 518

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRD+SAWFF+E++N  V ++K+WMGKFTNRNIAKCAARMGQCFSSTYAT+EVP  +VNS 
Sbjct: 519  LRDQSAWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSD 578

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIG+++  LA EVAEKL++  DPPCAYQIRYAG KGV+A WP   DG
Sbjct: 579  LPDIERNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDG 638

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KF+SNHT LEICSWTRFQPGFLNRQI+TLLS L V D +FW+MQETMVS+
Sbjct: 639  VRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSK 698

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++M  ++D+AFDV+T SC DQG+ AAIMLSAGFKP  EPHLRGMLT +RAAQL DLREK
Sbjct: 699  LNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREK 758

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
             RIFVPSGRWLMGCLDELG+LE GQCFIQVS  SLE+ F+KHG++FSE EK LQV+KG V
Sbjct: 759  TRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTV 818

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVR+LEAVD P LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWD
Sbjct: 819  VIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWD 878

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSKRSWIPM Y A EA+ L R V H DIIEFF KNMVN++LG ICNAHVVHADLS
Sbjct: 879  ENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLS 938

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGA D+ C+ LAELAA AVDFPKTGK+V+MPP LKPK+YPDFMGKEE Q+Y S KILG+
Sbjct: 939  EYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGR 998

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR+IKDA D     SSE      +I YD DLE+ G+  +I+DAW+ KCSYDGQL GLL 
Sbjct: 999  LYRQIKDAYDEDVAASSELNLVPGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLS 1058

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTGHIWSMPKYSS+KQGELK+RLKH+Y++L+KEFR++FE MD EF+QL D
Sbjct: 1059 QYKVKREEEVVTGHIWSMPKYSSRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLED 1118

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
             EKN +YE+KASAWYQV YH  W+KKS ELQ  D AG +VMLSFAWIAADYLARIKIR R
Sbjct: 1119 GEKNKLYEQKASAWYQVVYHPHWVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHR 1178

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
             T N  S KP++SL +YLAD++
Sbjct: 1179 ETGNVDSAKPVNSLAKYLADRM 1200


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 1312 bits (3396), Expect = 0.0
 Identities = 642/863 (74%), Positives = 738/863 (85%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGIINQHQ+S+KFFDLLRS+ +++N  ALKH+CSY+HPV+DA++ L+LV KWLL
Sbjct: 176  VNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLL 235

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLL+ P+E++DIVEVRRL+ITP+KAYCLPPEVELSNRVLRNY+ ++DRFLRVTFMDE
Sbjct: 236  KNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDE 295

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M T+N NVL YYV P+ + ITSNS PQ+T +FKRVK IL +GFYLCGRKYSFLAFSSNQ
Sbjct: 296  GMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQ 355

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAEDK T V  IK+WMGKFTNRN+AKCAARMGQCFSSTYATVEVPS +V  +
Sbjct: 356  LRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-E 414

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDI+RNGY FSDGIG +   LA+EVAEKL++    P AYQIRYAG KGV+A WP+  DG
Sbjct: 415  LPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDG 473

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L  R SM KF S+HTILEICSWTRFQPGFLNRQIVTLLSAL V D IFW+MQE+M+S+
Sbjct: 474  IRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISK 533

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML DTD+AFDV+  SC +QG+TAAIMLSAGFKPQTEPHL+GMLT IRAAQ   LREK
Sbjct: 534  LNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREK 593

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELGVLE GQCFIQVS PSLE  F+KHGSRFS  +K L+V+KG+V
Sbjct: 594  ARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIV 652

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
            AIAKNPCLHPGDVRILEAVDAP L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+
Sbjct: 653  AIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWE 712

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            E LIPPSK+SW PM Y + EA+ L R+V   DII+FFTKNMVNE+LG ICNAHVVHAD S
Sbjct: 713  ETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRS 772

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGALDE C+ LAE AA AVDFPKTGK+VT+PP LKPK+YPDFMGKEE QTY SNKILGK
Sbjct: 773  EYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGK 832

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            +YR+IKDA +    ESSEQ F  + + +D+DL I GS  FI DAW  KCSYDGQL GLLG
Sbjct: 833  MYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLG 892

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTGH+WSMPKY S+KQGEL ERLKHAYS+L+KEFR++FE M+ +FDQL+D
Sbjct: 893  QYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTD 952

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDA-GKTVMLSFAWIAADYLARIKIRR 2518
            DEKN +YE+KASAWYQVTYH +W+KKS ELQ  D+  G+ VMLSFAWI ADYLARIKIRR
Sbjct: 953  DEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRR 1012

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            + T N  S+KPI+SL R+L D+I
Sbjct: 1013 KGTGNVDSSKPINSLARFLVDRI 1035


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1312 bits (3396), Expect = 0.0
 Identities = 642/863 (74%), Positives = 738/863 (85%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGIINQHQ+S+KFFDLLRS+ +++N  ALKH+CSY+HPV+DA++ L+LV KWLL
Sbjct: 338  VNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLL 397

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLL+ P+E++DIVEVRRL+ITP+KAYCLPPEVELSNRVLRNY+ ++DRFLRVTFMDE
Sbjct: 398  KNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDE 457

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M T+N NVL YYV P+ + ITSNS PQ+T +FKRVK IL +GFYLCGRKYSFLAFSSNQ
Sbjct: 458  GMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQ 517

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAEDK T V  IK+WMGKFTNRN+AKCAARMGQCFSSTYATVEVPS +V  +
Sbjct: 518  LRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-E 576

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDI+RNGY FSDGIG +   LA+EVAEKL++    P AYQIRYAG KGV+A WP+  DG
Sbjct: 577  LPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L  R SM KF S+HTILEICSWTRFQPGFLNRQIVTLLSAL V D IFW+MQE+M+S+
Sbjct: 636  IRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML DTD+AFDV+  SC +QG+TAAIMLSAGFKPQTEPHL+GMLT IRAAQ   LREK
Sbjct: 696  LNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELGVLE GQCFIQVS PSLE  F+KHGSRFS  +K L+V+KG+V
Sbjct: 756  ARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIV 814

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
            AIAKNPCLHPGDVRILEAVDAP L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+
Sbjct: 815  AIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWE 874

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            E LIPPSK+SW PM Y + EA+ L R+V   DII+FFTKNMVNE+LG ICNAHVVHAD S
Sbjct: 875  ETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRS 934

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGALDE C+ LAE AA AVDFPKTGK+VT+PP LKPK+YPDFMGKEE QTY SNKILGK
Sbjct: 935  EYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGK 994

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            +YR+IKDA +    ESSEQ F  + + +D+DL I GS  FI DAW  KCSYDGQL GLLG
Sbjct: 995  MYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLG 1054

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTGH+WSMPKY S+KQGEL ERLKHAYS+L+KEFR++FE M+ +FDQL+D
Sbjct: 1055 QYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTD 1114

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDA-GKTVMLSFAWIAADYLARIKIRR 2518
            DEKN +YE+KASAWYQVTYH +W+KKS ELQ  D+  G+ VMLSFAWI ADYLARIKIRR
Sbjct: 1115 DEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRR 1174

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            + T N  S+KPI+SL R+L D+I
Sbjct: 1175 KGTGNVDSSKPINSLARFLVDRI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1311 bits (3394), Expect = 0.0
 Identities = 636/862 (73%), Positives = 728/862 (84%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+ KGI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA + L  VQKWL 
Sbjct: 337  VNAVLQKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLF 396

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NP LLER  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++++DRFLRVTFMDE
Sbjct: 397  KNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDE 456

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+NVLTYY   + R ITS+SNPQRT +F+RVK IL+ GFYLCGR+YSFLAFS+NQ
Sbjct: 457  GMRNLNRNVLTYYAATIVREITSSSNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQ 516

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAE     V NI NWMGKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+
Sbjct: 517  LRDRSAWFFAEAPEIRVPNIINWMGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSE 576

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGMMS  L++EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG
Sbjct: 577  LPDIERNGYVFSDGIGMMSADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDG 636

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+
Sbjct: 637  IRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSK 696

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD++L D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K
Sbjct: 697  LDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNK 756

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
             R+FVPSGRWLMGCLDEL  LE GQCFIQVS PSLE  FVKHG +FSE +K LQV+KGLV
Sbjct: 757  TRMFVPSGRWLMGCLDELRKLEQGQCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLV 816

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 817  VIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 876

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SW+PMDYA  EA++L R V+H+DII+FF+KNMV ESLG ICNAHVVHADLS
Sbjct: 877  ENLIPPSKKSWMPMDYAPAEAKQLGRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLS 936

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GALDEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKE  QTY S KILGK
Sbjct: 937  EFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGK 996

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++ D  D    ESS   F  ++I YD ++EI G + FI DAWN KCSYDGQL GLLG
Sbjct: 997  LYRQVIDVYDAEGGESSGLEFVPKDIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLG 1056

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVN EEE+VTGHIWSMPKYS+KKQGELKERLKHAY+TLRKEFR VFE M+P+FD L  
Sbjct: 1057 QYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPV 1116

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KASAWY+VTYH  W+ +S ELQ+ D     VMLSFAWIAADY+ARIKIR+R
Sbjct: 1117 DEKNDMYERKASAWYRVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQR 1176

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
              +N  STKPI+ LGRYL +KI
Sbjct: 1177 GMQNSDSTKPINFLGRYLVNKI 1198


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1305 bits (3376), Expect = 0.0
 Identities = 622/862 (72%), Positives = 715/862 (82%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGI+NQHQ+SE FFDLLR++PEE+N  ALKH+CSYKHPV+DA K L+LVQ+WLL
Sbjct: 336  VNAVMHKGILNQHQLSESFFDLLRNQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKL++ P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +ADRFLRVTFMDE
Sbjct: 396  RNPKLIKNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M T+N NV+  YV P+ + IT N+ PQ+T ++ R++ IL NGF+LCGRKYSFLAFSSNQ
Sbjct: 456  GMQTMNSNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAEDK   +  IKNWMG+FTNRN+AKCAARMGQCFSSTYATVEVPSTQVN +
Sbjct: 516  LRDRSAWFFAEDKTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIG ++  LA+EVAEKL++  DPP AYQIRY G KGV+A WP+  DG
Sbjct: 576  LPDIERNGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KF S+HT LEICSWTR QPGFLNRQI+TLLSAL V D IFW MQETMVS+
Sbjct: 636  FRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L +ML DTD+AFDV+T SC +QG++AAIMLSAGFKPQTEPHLRGMLT I+AAQL  LREK
Sbjct: 696  LKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
             RIFVPSGRWLMGCLDELGVLE GQCF+QVS PSLE  F KHGSRF + +K LQV+KG V
Sbjct: 756  TRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             +AKNPCLHPGD+RILEAVDAP LHHLHDCLVFPQKG RPHT+EASGSDLDGDLYFVTWD
Sbjct: 816  VVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPP K+SW PM+Y   EA+   R V   D+IEFF +NMVNE+LG ICNAHVVH+D S
Sbjct: 876  ENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGA DE C+KLAELAA+AVDFPKTGKIVTMPP LKPKLYPDFMGK++ Q+Y SNKILG+
Sbjct: 936  EYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGR 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYRKI DA D     SSEQ     ++ YD DLE+  +  FIADAW  KCSYD QL GL+ 
Sbjct: 996  LYRKICDAYDEDVANSSEQNHVPSDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMT 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYK+ REEE+VTGH+WSMPKY+S+KQGEL+ERLKH+YS L+KEFR+ FE MD  F+ L D
Sbjct: 1056 QYKIMREEEIVTGHVWSMPKYTSRKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLID 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            D+KN  YE+KASAWYQVTYH  W+KKS +L   D  G  VMLSFAWIAADYLARIKI+RR
Sbjct: 1116 DQKNSFYEQKASAWYQVTYHPDWVKKSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
               N    KPI+ L +YLAD+I
Sbjct: 1176 EVSNIDPKKPINILTKYLADRI 1197


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1304 bits (3375), Expect = 0.0
 Identities = 628/863 (72%), Positives = 724/863 (83%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGI NQHQ+S  FFDLLR++P EVN  ALKH+  Y+ PV+DA+K L++ Q+WLL
Sbjct: 336  VNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPK  +  ++++DI E+RRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE
Sbjct: 396  KNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             + T+N N L Y+  P+ R ITS S PQ+T +FKRV+ IL  GFYLCGR+YSFLAFSSNQ
Sbjct: 456  GLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED+N  V  IK+WMGKFTN+NIAKCAARMGQCFSSTYAT+EVP  +VNS 
Sbjct: 516  LRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSD 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDI+RNGY FSDGIGM++  LA EVAEKL+   DPPCAYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR+SM KF+SNHTILEICSWTRFQPGFLNRQI+TLLSAL V D +FW+MQE MVS+
Sbjct: 636  IRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML D+D+AFDV+T SC +QG+ AAIMLSAGFKPQ EPHLRGMLT +RAAQL  LREK
Sbjct: 696  LNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMGCLDELGVLE GQCFIQVS   LE  FVKHGS+FSE +K LQVVKG V
Sbjct: 756  ARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSKRSWIPM Y A EA++L R V H DI+EFF KNM NE+LG ICNAHVV ADLS
Sbjct: 876  ENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGALDEKC+ LAELAA AVDFPKTGKIV+MP +LKPK+YPDFMGKEE Q+Y S KILG+
Sbjct: 936  EYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGR 995

Query: 1982 LYRKIKDA-NDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLL 2158
            LYR+IKDA +D     SSE  F   +I YD DLE+ G+  FI+DAW+ KCSYDGQL GLL
Sbjct: 996  LYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLL 1055

Query: 2159 GQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLS 2338
             QYKV REEE+VTGH+WSMPK SS+KQG+LKERLKH+Y+ L++EFR+VFE MD +F QL 
Sbjct: 1056 AQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLD 1115

Query: 2339 DDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRR 2518
            DDEKN++YE+KASAWYQVTYH  W++KS ELQ  D AG +VMLSFAWIAADYLARIKIR 
Sbjct: 1116 DDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRH 1175

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
             R  N  S KP++SL +YLAD++
Sbjct: 1176 SRIGNVDSAKPVNSLAKYLADRM 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1304 bits (3374), Expect = 0.0
 Identities = 634/862 (73%), Positives = 725/862 (84%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAV+HKGI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA + L  VQKWL 
Sbjct: 336  VNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLF 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
            NNP LLER  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE
Sbjct: 396  NNPNLLERTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  LN+N LTYY   + R ITS+SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQ
Sbjct: 456  GMRNLNRNALTYYAANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAE     V +I NWMGKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+
Sbjct: 516  LRDRSAWFFAETPEIRVTSIINWMGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIGMM+  L++EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG
Sbjct: 576  LPDIERNGYVFSDGIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+
Sbjct: 636  IRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LD++L D+D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K
Sbjct: 696  LDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
             R+FV SGRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG  FSE +K LQVVKGLV
Sbjct: 756  TRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWD
Sbjct: 816  VIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWD 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SW+PM YA  EA++L R V+H+DII+FF KNMV ESLG ICNAHVVHADLS
Sbjct: 876  ENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            ++GA+DEKC+KLAELAA+AVDFPKTGK+VTMP +LKPK+YPDFMGKE  Q+Y S KILGK
Sbjct: 936  EFGAMDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGK 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR++ D  D    ESS   +  ++I YD +LEI G + FI DAWN KCSYDGQL GLLG
Sbjct: 996  LYRQVIDVYDAEGGESSGLEYVPKDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKVN EEE+VTGHIWSMPKYS+KKQGELKERLKHAY+ LRKEFR VFE M+P+FD L  
Sbjct: 1056 QYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPI 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DEKN MYE+KA AWY+VTYH  W+ +S ELQ+ D     VMLSFAWIAADY+ARIKIR+R
Sbjct: 1116 DEKNDMYERKAFAWYRVTYHPHWVTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQR 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
              +N  STKPIDSLGRYL +KI
Sbjct: 1176 GMQNFDSTKPIDSLGRYLVNKI 1197


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1273 bits (3294), Expect = 0.0
 Identities = 616/862 (71%), Positives = 711/862 (82%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGI NQHQ+SE FF+LLR +P EVN  ALKH+ SY+ PV+DA+K L+ V  WLL
Sbjct: 336  VNAVMHKGIFNQHQLSEDFFNLLRDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NP L + P++++DIVE+RRL+ITP KA+CL PEVELSNRVLR Y+ +ADRFLRVTFMDE
Sbjct: 396  RNPILFKSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M T+N NVLTYY   + R +TS    Q+T +FKRV+ IL +GFYLCGRKYSFLAFS+NQ
Sbjct: 456  GMQTINANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRD SAWFFAED  T V  I  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPST+VN  
Sbjct: 516  LRDSSAWFFAEDGKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPF 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            LPDIERNGYVFSDGIG ++  LA EVA+KL++  +PPCAYQIRYAG KGV+A WP   DG
Sbjct: 576  LPDIERNGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDG 635

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KF S+HT LEICSWTRFQPGFLNRQI+TLLS   V D +FW MQ TMVS+
Sbjct: 636  VRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSK 695

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L+++L DTD+AF+V+T SC++QG+ AAIMLSAGFKPQTEPHLRG+LT +RA+QL  LREK
Sbjct: 696  LNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREK 755

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVPSGRWLMG LDELGVLE GQCFIQVS PS+E  F+KHGSRF+E +K  +V++GLV
Sbjct: 756  ARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLV 815

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTW+
Sbjct: 816  VIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWE 875

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            + LIPP K+SW PM Y  GE +E+ R+V H DII+FF KNMVNE LGTICNAHVVHADLS
Sbjct: 876  DLLIPPGKKSWPPMQYDPGETKEIQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLS 935

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            +YGALDEKCI LAELAA AVDFPKTGKIV+MP  LKPKLYPDFMGKEE Q+Y S KILG+
Sbjct: 936  EYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGR 995

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR IKD  D    ESSE      +I YD DLE+TGS  +I DAW  KCSYD QLIGLLG
Sbjct: 996  LYRHIKDVYDEDLSESSEINLDSPDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLG 1055

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTGHIWSMPKY+S+K G+LKE+L H+Y  LRKEFR++FESMD E +QL++
Sbjct: 1056 QYKVKREEEVVTGHIWSMPKYTSRKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNE 1115

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRRR 2521
            DE+N +YE+KASAWYQVTYH  W++K  ELQ  D A   VMLSFAWIAADYLARIKIR +
Sbjct: 1116 DERNELYERKASAWYQVTYHPKWVEKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQ 1175

Query: 2522 RTENDISTKPIDSLGRYLADKI 2587
             T N   +KP++SL +YLADKI
Sbjct: 1176 GTGNVDFSKPVNSLVKYLADKI 1197


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1270 bits (3286), Expect = 0.0
 Identities = 622/863 (72%), Positives = 722/863 (83%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGIINQHQ+S+ FFDLLR +  EVN  ALKH+ SYK PV+DA K L+LVQ+WLL
Sbjct: 336  VNAVMHKGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLL 395

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             +P+L + P++++DIVEVRRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE
Sbjct: 396  KDPELYKGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDE 455

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             + T+N NVL+Y++ P+ R IT NS  Q+T +FKRV+ IL+ GFYLCGRK+SFLAFSS+Q
Sbjct: 456  GLQTMNANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQ 515

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRD SAWFF+ED  T V +IK WMG+FT++NIAKCAARMGQCFSSTYATVEVP T+V+ +
Sbjct: 516  LRDCSAWFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPE 575

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPP-CAYQIRYAGYKGVIARWPNIKD 898
            LPDI+RNGYVFSDGIG ++  LA+EVA+KL++  +PP CAYQIRYAG KGV+A WP   D
Sbjct: 576  LPDIKRNGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGD 635

Query: 899  GTHLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVS 1078
            G  + LR SM KF+S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +FW MQ++M+S
Sbjct: 636  GIRMSLRESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLS 695

Query: 1079 RLDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLRE 1258
            +L++ML D+D+AF+V+T +C +QG+TAAIMLSAGF PQTEPHLRGMLT IRAAQL  LRE
Sbjct: 696  KLNQMLVDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLRE 755

Query: 1259 KARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGL 1438
            KARIFVP+GRWLMGCLDELGVLE GQCFIQVS P L   F KHGSRF+E  KKLQV+KG 
Sbjct: 756  KARIFVPAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGF 814

Query: 1439 VAIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 1618
            V IAKNPCLHPGD+RILEAVD PELHHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTW
Sbjct: 815  VVIAKNPCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTW 874

Query: 1619 DENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADL 1798
            DENLIPPSK+SW PM+Y A EA+ L R V   DIIEFF K+MVNE+LGTICNAHVVHAD 
Sbjct: 875  DENLIPPSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADH 934

Query: 1799 SDYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILG 1978
            S+YGALDE CI LAELAA AVDFPKTGKIVTMP  LKPKLYPDFMGKE  Q+Y SNKILG
Sbjct: 935  SEYGALDENCILLAELAATAVDFPKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILG 994

Query: 1979 KLYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLL 2158
            +LYR+ KDA D     SSE      +I YD DLE+  S  FIADAWN KCSYDGQL GLL
Sbjct: 995  RLYRQSKDAYDEDISVSSEVDINPVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLL 1054

Query: 2159 GQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLS 2338
             QYKVNREEELVTGHIWSMPKY+S+KQGELKERLKH+YS LRKEFR+VFE MD + + LS
Sbjct: 1055 EQYKVNREEELVTGHIWSMPKYNSRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLS 1114

Query: 2339 DDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRR 2518
            +DEKN ++E+KASAWYQVTYH  W+KKS +LQ  D A   V+LSFAWIA DYLARIKIR 
Sbjct: 1115 EDEKNALFERKASAWYQVTYHPEWVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRC 1174

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            R   N  ++KP++ L RY+AD+I
Sbjct: 1175 REMANIDTSKPVNYLARYVADRI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1264 bits (3272), Expect = 0.0
 Identities = 608/863 (70%), Positives = 711/863 (82%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            +N ++HKGI NQH +S+  FDL R++P E+N  ALKH+ SYK PV+DA+  L+ VQ+WLL
Sbjct: 332  LNVIVHKGIFNQHNISDGLFDLFRNQPREINLAALKHISSYKRPVFDAYAKLKNVQEWLL 391

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKLL+ PR+++DI EVRRL+ITP +AYCLPPEVELSNRVLR Y+ ++DRFLRVTFMDE
Sbjct: 392  RNPKLLKIPRQLDDIAEVRRLVITPTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDE 451

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M T+N NVLTYY  P+ + +TSNS  Q+T +FKRVK +L +GFYLCG++YSFLAFSSNQ
Sbjct: 452  GMQTMNLNVLTYYPAPIVKELTSNSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQ 511

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAED    V  IK WMG+F NRNIAKCAARMGQCFSSTYATVEVP T+VN  
Sbjct: 512  LRDRSAWFFAEDGKITVNGIKKWMGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFD 571

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            L +IERN YVFSDGIGM++  LA EVAEKL++  +PP AYQIRYAG KGV+A WP   DG
Sbjct: 572  LEEIERNTYVFSDGIGMITPDLAKEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDG 631

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KF+S HTILEICSWTRFQPGFLNRQIVTLLS L V D IFW+MQETM+ +
Sbjct: 632  IRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFK 691

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML D D+AF+V+T SC +QG+  AIMLSAGFKPQ+EPHL+GMLT IRAAQL  LREK
Sbjct: 692  LNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREK 751

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFVP GRWLMGCLDELGVLE GQCFIQVS PSLE  F KHGSRFSE +  L+V+KG V
Sbjct: 752  ARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFV 811

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGD+RILEAVD P LHHL+DCLVFPQKGDRPH NEASGSDLDGDLYFVTWD
Sbjct: 812  VIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWD 871

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SW PM Y   + R LPRDV   DII+FF++NMVNESLG ICNAHVVHADLS
Sbjct: 872  ENLIPPSKKSWNPMQYDPAKPRTLPRDVTQKDIIDFFSRNMVNESLGAICNAHVVHADLS 931

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            DYGALDEKC+ LAELAAIAVDFPKTG IVTMP  LKPK+YPDFMGKEE Q+Y S KI+G+
Sbjct: 932  DYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGR 991

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYR+IKD        SSE      NI +D DLE+ G+  F+ DAW  KCSYDGQL GL+ 
Sbjct: 992  LYRQIKDEYSDDVSPSSELNIVSSNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMI 1051

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTG IWSMPK++S+K+G+LKERLKH+Y+ LRKEFR+VFE +D +F+QL+D
Sbjct: 1052 QYKVKREEEVVTGQIWSMPKHNSRKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTD 1111

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKEL-QMVDDAGKTVMLSFAWIAADYLARIKIRR 2518
            DEKN++YEK+ASAWYQ+TYH  W+KKS+++   +++    VMLSFAWIAADYLARIKIR 
Sbjct: 1112 DEKNVLYEKRASAWYQITYHPKWVKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRC 1171

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            R   +  STKPI+SLG+YLAD+I
Sbjct: 1172 RGVGDADSTKPINSLGKYLADRI 1194


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1260 bits (3260), Expect = 0.0
 Identities = 609/863 (70%), Positives = 714/863 (82%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKG +NQHQ+S+ FF LLRS+P+E+N  ALKH+CSY+ PV+DA + L++VQ WLL
Sbjct: 335  VNAVMHKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLL 394

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NPKL++ P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +ADRFLRVTFMDE
Sbjct: 395  KNPKLVKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDE 454

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  +N NVL YYV P+ + ITSNS  Q+T +FKR + ILN+GFYLCGRKY+FLAFSSNQ
Sbjct: 455  GMQKINSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQ 514

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRDRSAWFFAE  N  V  I +WMGKF N+N+AKCAARMGQCFSSTYATVEV S++VN  
Sbjct: 515  LRDRSAWFFAECVNISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVND- 573

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            +PDI+RNGYVFSDGIGM++  LA+EVAEKL++  +PPCAYQIR+AG KGV+A WP+  DG
Sbjct: 574  IPDIKRNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDG 633

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LRTSM KFES HT LEICSWTR+QPGFLNRQI+TLLS L VED IFWRMQE MV +
Sbjct: 634  FRLSLRTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLK 693

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            L++ML DTD+AFDV+T SC +QG+ AAIMLSAGFKPQTEPHLRGMLT I+AAQL  LREK
Sbjct: 694  LNQMLVDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREK 753

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFV SGRWLMG LDELGVLE GQCF+QVS P LE  F KHGS F++ E+ LQV+KG V
Sbjct: 754  ARIFVHSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHV 813

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGD+RILEAVDAP LHHL+DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWD
Sbjct: 814  VIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWD 873

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
            ENLIPPSK+SW+PM Y   EA+   R V   DII+FF KNM NE+LG ICNAHVVHAD S
Sbjct: 874  ENLIPPSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRS 933

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
            DYGALD  C+KLAELAA+AVDFPKTGKIV++P  LKP+LYPDF+GKE+ Q+Y S KILG+
Sbjct: 934  DYGALDVNCLKLAELAALAVDFPKTGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGR 993

Query: 1982 LYRKIKDANDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLLG 2161
            LYRK++DA D     SSE  +   +I YD DLE+ G+  F+ DAW  KCSYDGQL GL+G
Sbjct: 994  LYRKVRDAYDEDAATSSELHYFPSDIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMG 1053

Query: 2162 QYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLSD 2341
            QYKV REEE+VTGH+WS+PK +SKKQGELKERL H+Y+ L+KEFR++FE++D   + L+D
Sbjct: 1054 QYKVKREEEIVTGHVWSIPKSNSKKQGELKERLSHSYNALKKEFRQMFENLDSNLEALTD 1113

Query: 2342 DEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGK-TVMLSFAWIAADYLARIKIRR 2518
            DEKN++ EKKASAWYQVTYH  W+K+S  LQ  D  G   VMLSFAWIAADYLARIKI+ 
Sbjct: 1114 DEKNLLCEKKASAWYQVTYHPKWVKQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKC 1173

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
               E+  STKPI+SL RYLAD+I
Sbjct: 1174 HGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
          Length = 1197

 Score = 1258 bits (3256), Expect = 0.0
 Identities = 607/863 (70%), Positives = 714/863 (82%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGIINQHQMS++FFDLLR++P EVN  AL H+ +++ PV DA K L+LVQ+WLL
Sbjct: 335  VNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLL 394

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NP LL+R +E+ DIVE+RRL+ITP+KAYC PPEVELSNRVLR Y+++ADRFLRVTFMDE
Sbjct: 395  KNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDE 454

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  +N +V TYYV P+ + ITS+S PQ+T +F R+K IL +GF+LCGRKYSFLA+SSNQ
Sbjct: 455  GMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQ 514

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRD+SAWFFAE K+  V  I  WMGKFTN+N+AKCAAR+GQCFSSTYAT+EVP   VN  
Sbjct: 515  LRDQSAWFFAECKSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHD 574

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            L D+ERNGYVFSDGIG ++  LA EVA+KL++   PPCAYQIRYAGYKGV+A WP+ KDG
Sbjct: 575  LSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDG 634

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KFESNH ILEICSWTRFQPGFLNRQI+TLLS L V D IFW MQETM+S+
Sbjct: 635  IRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISK 694

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LDRM+ DTD+AF+V+T SC +QG+ AAIMLSAGF+P+TEPHLRGML  IRAAQL  LREK
Sbjct: 695  LDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREK 754

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFV  GRW MGC DE GVL+ GQCFIQVS P LE+ F KHGS F+E +  L VV+G V
Sbjct: 755  ARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTV 814

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVDAPELHHL+DCLVFP+ G+RPHTNEASGSDLDGDLYF TWD
Sbjct: 815  VIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWD 874

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
             NLIPPSK+SW PM+YA  E + L R +   DI+EFF KNM+NESLGTICNAHVVHAD S
Sbjct: 875  GNLIPPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRS 934

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
             +GALDE CI+L+ELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE  Q+Y S KILGK
Sbjct: 935  KHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGK 994

Query: 1982 LYRKIKDA-NDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLL 2158
            +YR+I+DA +D     S E  F   ++ YD DLE+ G++ FIA+AW+ KCSYDGQL GLL
Sbjct: 995  MYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLL 1054

Query: 2159 GQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLS 2338
            GQYKVNREEE+VTGHIWSMPKY S+KQGELKE+LKH+YSTL+K+FR+VFE++ PEF+QL+
Sbjct: 1055 GQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLT 1114

Query: 2339 DDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRR 2518
             DE+N +YEKKASAWYQV YH +WLKKS EL+  D      MLSF WIAADYLARIKI+ 
Sbjct: 1115 CDERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKC 1174

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            RRT++   TKPI+SL  YL+D++
Sbjct: 1175 RRTKSFDPTKPINSLASYLSDRM 1197


>ref|NP_001267634.1| RNA-dependent RNA polymerase 6-like [Cucumis sativus]
            gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
            6 [Cucumis sativus]
          Length = 1197

 Score = 1258 bits (3256), Expect = 0.0
 Identities = 607/863 (70%), Positives = 714/863 (82%), Gaps = 1/863 (0%)
 Frame = +2

Query: 2    VNAVMHKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLL 181
            VNAVMHKGIINQHQMS++FFDLLR++P EVN  AL H+ +++ PV DA K L+LVQ+WLL
Sbjct: 335  VNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAFRRPVLDACKKLKLVQEWLL 394

Query: 182  NNPKLLERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDE 361
             NP LL+R +E+ DIVE+RRL+ITP+KAYC PPEVELSNRVLR Y+++ADRFLRVTFMDE
Sbjct: 395  KNPTLLKRSKELVDIVEIRRLVITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDE 454

Query: 362  AMMTLNKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQ 541
             M  +N +V TYYV P+ + ITS+S PQ+T +F R+K IL +GF+LCGRKYSFLA+SSNQ
Sbjct: 455  GMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQ 514

Query: 542  LRDRSAWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSK 721
            LRD+SAWFFAE K+  V  I  WMGKFTN+N+AKCAAR+GQCFSSTYAT+EVP   VN  
Sbjct: 515  LRDQSAWFFAECKSISVDAILGWMGKFTNKNVAKCAARIGQCFSSTYATIEVPRNMVNHD 574

Query: 722  LPDIERNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG 901
            L D+ERNGYVFSDGIG ++  LA EVA+KL++   PPCAYQIRYAGYKGV+A WP+ KDG
Sbjct: 575  LSDVERNGYVFSDGIGTITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDG 634

Query: 902  THLHLRTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSR 1081
              L LR SM KFESNH ILEICSWTRFQPGFLNRQI+TLLS L V D IFW MQETM+S+
Sbjct: 635  IRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISK 694

Query: 1082 LDRMLEDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREK 1261
            LDRM+ DTD+AF+V+T SC +QG+ AAIMLSAGF+P+TEPHLRGML  IRAAQL  LREK
Sbjct: 695  LDRMITDTDVAFEVLTASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREK 754

Query: 1262 ARIFVPSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLV 1441
            ARIFV  GRW MGC DE GVL+ GQCFIQVS P LE+ F KHGS F+E +  L VV+G V
Sbjct: 755  ARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPLLEKCFSKHGSLFAETKNNLTVVRGTV 814

Query: 1442 AIAKNPCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD 1621
             IAKNPCLHPGDVRILEAVDAPELHHL+DCLVFP+ G+RPHTNEASGSDLDGDLYF TWD
Sbjct: 815  VIAKNPCLHPGDVRILEAVDAPELHHLYDCLVFPRNGERPHTNEASGSDLDGDLYFTTWD 874

Query: 1622 ENLIPPSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNAHVVHADLS 1801
             NLIPPSK+SW PM+YA  E + L R +   DI+EFF KNM+NESLGTICNAHVVHAD S
Sbjct: 875  GNLIPPSKKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRS 934

Query: 1802 DYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPELKPKLYPDFMGKEELQTYHSNKILGK 1981
             +GALDE CI+L+ELAA AVDFPKTGK+VTMPP LKPKLYPDFMGKE  Q+Y S KILGK
Sbjct: 935  KHGALDENCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGK 994

Query: 1982 LYRKIKDA-NDRGYEESSEQTFALENITYDQDLEITGSKSFIADAWNCKCSYDGQLIGLL 2158
            +YR+I+DA +D     S E  F   ++ YD DLE+ G++ FIA+AW+ KCSYDGQL GLL
Sbjct: 995  MYRRIRDAYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLL 1054

Query: 2159 GQYKVNREEELVTGHIWSMPKYSSKKQGELKERLKHAYSTLRKEFRKVFESMDPEFDQLS 2338
            GQYKVNREEE+VTGHIWSMPKY S+KQGELKE+LKH+YSTL+K+FR+VFE++ PEF+QL+
Sbjct: 1055 GQYKVNREEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLT 1114

Query: 2339 DDEKNIMYEKKASAWYQVTYHESWLKKSKELQMVDDAGKTVMLSFAWIAADYLARIKIRR 2518
             DE+N +YEKKASAWYQV YH +WLKKS EL+  D      MLSF WIAADYLARIKI+ 
Sbjct: 1115 CDERNALYEKKASAWYQVAYHPTWLKKSLELREPDAPEAVPMLSFPWIAADYLARIKIKC 1174

Query: 2519 RRTENDISTKPIDSLGRYLADKI 2587
            RRT++   TKPI+SL  YL+D++
Sbjct: 1175 RRTKSFDPTKPINSLASYLSDRM 1197