BLASTX nr result
ID: Rehmannia25_contig00000985
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00000985
(8765 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 2945 0.0
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 2940 0.0
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 2937 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 2935 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 2933 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 2931 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 2930 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 2927 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 1106 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 1103 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 961 0.0
dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus] 644 0.0
ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf ... 644 0.0
gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus] 643 0.0
gb|ABY71563.1| polymerase [Apple chlorotic leaf spot virus] 642 0.0
ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus] gi|... 641 e-180
gb|AGW07336.1| RNA polymerase [Apple chlorotic leaf spot virus] 640 e-180
gb|AGK63259.1| replicase [Cherry mottle leaf virus] 640 e-180
gb|AGW07339.1| RNA polymerase [Apple chlorotic leaf spot virus] 640 e-180
ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi... 638 e-179
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
replication protein; Includes: RecName: Full=RNA-directed
RNA polymerase; Includes: RecName: Full=Helicase
gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
leaf blotch virus]
Length = 1962
Score = 2945 bits (7634), Expect = 0.0
Identities = 1430/2000 (71%), Positives = 1650/2000 (82%), Gaps = 2/2000 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDAIY+AAAQT+++HS+FRNKHFAY+LNSYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKNRVNGRAPS 416
IELYPNGY+PHSHPLSKIFENHLLFDVLPGVVNTS+L+MCSIKESKVLVFK +
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 417 HTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKE 593
+ +++SL ++ SF+NRLV+SKDVSRYTEEADAFF ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 594 AIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKL 773
A+FFHDEVHHW+K QMFSFLK T+VKRFIFT+VYPPEILKKFANSQNPKVYDF+V KG+L
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 774 FFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITDSK 953
FFFPDGV+TEAYEQ+LN+ WLFSASH +SGD WTVTRHKSIYAHHLFEI+ G+L+TDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 954 IFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1133
+FFSDYNSIDMSK+FL+RFRSY+VFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1134 DVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKNTF 1313
DVEIKEFLFFEQFCKRLI+RQTSWGLFG+SF EKLTD+ALS +PN IAR+FPQWK KNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1314 EFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDDGF 1493
EFLFSLGTL V++ER++C+EHVLEEWGFEVVI DENAYLDPLSIFA+NENFN +RVDDG+
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1494 LDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHFEP 1673
L+R++LPFWN+ DYD+KR+R N Y++L F ER++ES + GP++MLQIEWYGIK F+
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1674 DVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLEEL 1853
D FISNSI EFT LE L+GK+I+P KYS+ KQA L L +C +G + ++L+ LE
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1854 LQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDSTP 2033
L+ GHD + E E++ E A A L + + +I
Sbjct: 601 LKAAGHDVSDDEEE-----ELTSAEQAGPIKILADPLGFMKECLEEIPI---------ET 646
Query: 2034 KPNCMEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNMIHG 2213
+P+ E+ ++ + FEI+Y+DIF ++C HG
Sbjct: 647 EPSLEERG-----------------------QFSTDYHSEKFEINYNDIFNPHNCMNTHG 683
Query: 2214 DLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVWMEA 2393
D I TPSDGNCFF A+T F E + LR F++WL+ FN G YA + + +GV+MEA
Sbjct: 684 DEIPTPSDGNCFFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEA 743
Query: 2394 EWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLFPSV 2573
E IYLFCVFRGV+L++HD + + E V+ VH GF EGH+ RG+HF+G+ET++ +L
Sbjct: 744 ELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDP 803
Query: 2574 LLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVPSLN 2753
LL D P GF + +T F P FNC +FRGR+AAF+T+VDADYGHNGM+YP N+WVPSL
Sbjct: 804 LLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLE 863
Query: 2754 DILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDS 2933
+I++ICG G DFNCALINFYEA +SLGFH+DNERVYNDDPILTV GE F IE+KD
Sbjct: 864 EIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQV 923
Query: 2934 HQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRNMCL 3113
F MTAG++FLMPKGFQKK+RHSV E SRVSITFRKHVRR++G+PI +RE+ Y+N CL
Sbjct: 924 TSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTCL 983
Query: 3114 INAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVDGK 3293
INA +K +KRS + II+KL+ N FW R+LSEGNGGSIEDCQ A EAL +T++L V+GK
Sbjct: 984 INAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGK 1043
Query: 3294 CLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV-FS 3470
C+V +NHFS ++A + +TFVSH+ KGN++V +G L+ V +
Sbjct: 1044 CVVLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAA 1103
Query: 3471 GYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVIAI 3650
G N++QF A FE ARIL NSFLN+TTGI L ++LDNGE YF HIL+ D +K IG DV +
Sbjct: 1104 GVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK-DRVKQIGIDVTMV 1162
Query: 3651 CGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKS 3830
CGFAGSGKSR LQ WLH RK+ NFCVVSPRTNLA DW++KLELEPNE RKV TFEKFIK+
Sbjct: 1163 CGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKT 1222
Query: 3831 EKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLTFE 4010
+KSKLDLIVIDELTLFPNGYLDLL++EL VNRHC ++LLFDPLQARYHNK+DES+LTFE
Sbjct: 1223 DKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFE 1282
Query: 4011 HDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADD 4190
HDVDRLI G ++ YIYST+RMS +FNRF DVPC N R Q++W FDDVYSI S D
Sbjct: 1283 HDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSD 1342
Query: 4191 RNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALT 4370
R E CDVLLVESDLEKKAFS +I VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALT
Sbjct: 1343 RQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1402
Query: 4371 RARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCH 4550
RAR R SLC TFLGG++EFKVK+K LI S+L+GE +TF N M+KCNLIR K+NGC
Sbjct: 1403 RARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR 1462
Query: 4551 DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFD 4730
DEVDREERL GDPFLKPFIFLGQR+ ++ V++ + EP CQTHL+ITEPNFGLCYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522
Query: 4731 FIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAV 4910
FIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582
Query: 4911 KKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKS 5090
+KRLVFREEEENYQRL +AHL+GGLLY NFKKKMGL F FDQGL EES+NAFE+KKLEKS
Sbjct: 1583 RKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642
Query: 5091 CGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 5270
CGTI+SHSIRSDIDW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702
Query: 5271 RYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFEL 5450
RYLETQ+RNQLPEEIYIHSNKNFDDL++WVKKFFQRDICVESDYEAFDASQDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEI 1762
Query: 5451 HLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR 5630
HLMKDAHFPQ +IDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWR
Sbjct: 1763 HLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822
Query: 5631 SGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPE 5810
GQPIAFAGDDMCALNNL VCHDFDDLFE ISLKAKVERTETPMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882
Query: 5811 LVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHI 5990
LVYNRFQVAIEEGKVLECLENYAIEVSYAY LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942
Query: 5991 DKLKTKVRDLFIEQSSDEDI 6050
DKLKTKVRDLF+EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 2940 bits (7622), Expect = 0.0
Identities = 1429/2000 (71%), Positives = 1649/2000 (82%), Gaps = 2/2000 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDAIY+AAAQT+++HS+FRNKHFAY+LNSYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKNRVNGRAPS 416
IELYPNGY+PHSHPLSKIFENHLLFDVLPGVVNTS+L+MCSIKESKVLVFK +
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 417 HTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKE 593
+ +++SL ++ SF+NRLV+SKDVSRYTEEADAFF ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 594 AIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKL 773
A+FFHDEVHHW+K QMFSFLK T+VKRFIFT+VYPPEILKKFANSQNPKVYDF+V KG+L
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 774 FFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITDSK 953
FFFPDGV+TEAYEQ+LN+ WLFSASH +SGD WTVTRHKSIYAHHLFEI+ G+L+TDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 954 IFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1133
+FFSDYNSIDMSK+FL+RFRSY+VFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1134 DVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKNTF 1313
DVEIKEFLFFEQFCKRLI+RQTSWGLFG+SF EKLTD+ALS +PN IAR+FPQWK KNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1314 EFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDDGF 1493
EFLFSLGTL V++ER++C+EHVLEEWGFEVVI DENAYLDPLSIFA+NENFN +RVDDG+
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1494 LDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHFEP 1673
L+R++LPFWN+ DYD+KR+R N Y++L F ER++ES + GP++MLQIEWYGIK F+
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1674 DVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLEEL 1853
D FISNSI EFT LE L+GK+I+P KYS+ KQA L L +C +G + ++L+ LE
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1854 LQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDSTP 2033
L+ GHD + E E++ E A A L + + +I
Sbjct: 601 LKAAGHDISDDEEE-----ELTSAEQAGPIKILADPLGFMKECLEEIPI---------ET 646
Query: 2034 KPNCMEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNMIHG 2213
+P+ E+ ++ + FEI+Y+DIF ++C HG
Sbjct: 647 EPSLEERG-----------------------QFSTDYHSEKFEINYNDIFNPHNCMNTHG 683
Query: 2214 DLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVWMEA 2393
D I TPSDGNCFF A+T F E + LR F++WL+ FN G YA + + +GV+MEA
Sbjct: 684 DEIPTPSDGNCFFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEA 743
Query: 2394 EWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLFPSV 2573
E IYLFCVFRGV+L++HD + + E V+ VH GF EGH+ RG+HF+G+ET++ +L
Sbjct: 744 ELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDP 803
Query: 2574 LLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVPSLN 2753
LL D P GF + +T F P FNC +FRGR+AAF+T+VDADYGHNGM+YP N+WVPSL
Sbjct: 804 LLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLE 863
Query: 2754 DILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDS 2933
+I++ICG G DFNCALINFYEA +SLGFH+DNERVYNDDPILTV GE F IE+KD
Sbjct: 864 EIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQV 923
Query: 2934 HQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRNMCL 3113
F MTAG++FLMPKGFQKK+RHSV E RVSITFRKHVRR++G+PI +RE+ Y+N CL
Sbjct: 924 TSFLMTAGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENYKNTCL 983
Query: 3114 INAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVDGK 3293
INA +K +KRS + II+KL+ N FW R+LSEGNGGSIEDCQ A EAL +T++L V+GK
Sbjct: 984 INAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGK 1043
Query: 3294 CLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV-FS 3470
+V +NHFS ++A + +TFVSH+ KGN++V +G E L+ V +
Sbjct: 1044 YVVLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAA 1103
Query: 3471 GYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVIAI 3650
G N++QF A FE ARIL NSFLN+TTGI L ++LDNGE YF HIL+ D +K IG DV +
Sbjct: 1104 GVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK-DRVKQIGTDVTMV 1162
Query: 3651 CGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKS 3830
CGFAGSGKSR LQ WLH RK+ NFCVVSPRTNLA DW++KLELEPNE RKV TFEKFIK+
Sbjct: 1163 CGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKT 1222
Query: 3831 EKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLTFE 4010
+KSKLDLIVIDELTLFPNGYLDLL++EL VNRHC ++LLFDPLQARYHNK+DES+LTFE
Sbjct: 1223 DKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFE 1282
Query: 4011 HDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADD 4190
HDVDRLI G ++ YIYST+RMS +FNRF DVPC N R Q++W FDDVYSI S D
Sbjct: 1283 HDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSD 1342
Query: 4191 RNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALT 4370
R E CDVLLVESDLEKKAFS +I VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALT
Sbjct: 1343 RQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1402
Query: 4371 RARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCH 4550
RAR R SLC TFLGG++EFKVK+K LI S+L+GE +TF N M+KCNLIR K+NGC
Sbjct: 1403 RARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR 1462
Query: 4551 DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFD 4730
DEVDREERL GDPFLKPFIFLGQRI ++ V++ + EP CQTHL+ITEPNFGLCYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522
Query: 4731 FIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAV 4910
FIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582
Query: 4911 KKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKS 5090
+KRL+FREEEENYQRL +AHL+GGLLY NFKKKMGL F FDQGL EES+NAFE+KKLEKS
Sbjct: 1583 RKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642
Query: 5091 CGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 5270
CGTI+SHSIRSDIDW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702
Query: 5271 RYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFEL 5450
RYLETQ+RNQLPEEIYIHSNKNFDDL++WVKKFFQRDICVESDYEAFDASQDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEI 1762
Query: 5451 HLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR 5630
HLMKDAHFPQ +IDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWR
Sbjct: 1763 HLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822
Query: 5631 SGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPE 5810
GQPIAFAGDDMCALNNL VCHDFDDLFE ISLKAKVERTETPMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882
Query: 5811 LVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHI 5990
LVYNRFQVAIEEGKVLECLENYAIEVSYAY LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942
Query: 5991 DKLKTKVRDLFIEQSSDEDI 6050
DKLKTKVRDLF+EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2937 bits (7613), Expect = 0.0
Identities = 1439/2002 (71%), Positives = 1642/2002 (82%), Gaps = 4/2002 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDA+Y+AAAQT+I+HS+FRNKHFAYAL SYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKN-RVNGRAP 413
IELYPNGY+PHSHPLSKIFENH+LFDVLP VV+TSKLIMCSIKESKVL+FKN R +
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 414 SHTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKG-ELFSNNFIKSISG 587
G D+ S SF+NRLV+SKD+ RYTEEADAFFS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFINRLVASKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 588 KEAIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKG 767
KEA+FFHDEVHHW+K QMFSFLKRT+V+RFIFTIVYPPE+LKKFANSQNPKVYDF+V KG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 768 KLFFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITD 947
+LFFFPDGV+TEAYEQ+LN+ WLFSASHFKSGD TWTVTRHKSIY+HHLFE++ G+LI+D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 948 SKIFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1127
SKIFFSDY SIDMSK+FL+RFRSY+VFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1128 GDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKN 1307
GDDVEIKEFLFFEQFCKRLI+RQTSWGLFGYSF +KLTD+ALSKMPNV+ARMFPQWK KN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1308 TFEFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDD 1487
TFEFLFSLGTL VEIERR+C+EH+LEEWGFEVVI DENAYLDPLS+FALNENFN ERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1488 GFLDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHF 1667
G+LDRVKLPFWN+KDYD KR RAN+YDLLC F ER+ + +E GPH+MLQIEWYGI+ F
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1668 EPDVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLE 1847
+ D FI+N I EFT LE LIGK+I+ +YS+ KQA+VL CL VC+ G L+ LE
Sbjct: 541 D-DPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLE 599
Query: 1848 ELLQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDS 2027
LQ G D IE ES G+ + DA T +S LV I T D G+S
Sbjct: 600 RRLQSAGRDPIES--ESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFS--DEGES 655
Query: 2028 TPKPNC-MEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNM 2204
+ + +E + + + + FEID+ DIFR ++C
Sbjct: 656 QHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIK---------FEIDFSDIFRPHNCMN 706
Query: 2205 IHGDLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVW 2384
HG I TP DGNCFF A+ F C S+DLR +FA+WL TF+ G YAD K+ +GV+
Sbjct: 707 THGYEIPTPMDGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVF 766
Query: 2385 MEAEWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLF 2564
MEAE IYLFC++R V+L++HD ++D E VF +H GF EGH+ +RGDHFLG+ET+
Sbjct: 767 MEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFA 826
Query: 2565 PSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVP 2744
L + P G+ + L +F +P FNC +FRGR+ AFLT+VDADYGHNGM+YP NAWVP
Sbjct: 827 SDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVP 886
Query: 2745 SLNDILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYK 2924
SL++I+ IC G DFNCALINFY +SLGFH+DNERVYNDDPILTV +GE F IE+K
Sbjct: 887 SLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFK 946
Query: 2925 DDSHQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRN 3104
+ + F MTAG++FLMP+GFQ+K+RHSV E RVSITFRKH+RR+DG+PI +R+D YRN
Sbjct: 947 EQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRN 1006
Query: 3105 MCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMV 3284
+CLI A++K + R + II+KL+ N FW RFLS+GNGGS+EDC A EAL IT++L V
Sbjct: 1007 VCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFV 1066
Query: 3285 DGKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV 3464
DGKCLV DNHFS V +I +TFVSH+A K NL V GL E L S++
Sbjct: 1067 DGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEM 1126
Query: 3465 FSGYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVI 3644
+G N +QFIA FE AR+L NSFLN+TTGI LSR+LDNGE YF H + ++ K IGFDV
Sbjct: 1127 STGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLH-MSEERPKQIGFDVT 1185
Query: 3645 AICGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFI 3824
AICGFAGSGKSR LQ WLH RKR NFCVVSPR NLA DWS+KLELEPNE RKV TFE FI
Sbjct: 1186 AICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFI 1245
Query: 3825 KSEKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLT 4004
K +KSKLD+IV+DELTLFPNGYLDLLI+EL + N HC ++LLFDPLQARYHNK+DE+VL
Sbjct: 1246 KMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLN 1305
Query: 4005 FEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQA 4184
FEHDVDRLI G DLRYIYS++RMS +FNRF DVPC N Q++W DDVYSI+S
Sbjct: 1306 FEHDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVC 1365
Query: 4185 DDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVA 4364
D+ E CDVLLVESDLEKKAFS VI VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VA
Sbjct: 1366 IDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVA 1425
Query: 4365 LTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNG 4544
LTRA+ R+S C TFLGG+DEFK+K+ L+ S+LEG+ +TFE N MVKCNLI+ KKNG
Sbjct: 1426 LTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNG 1485
Query: 4545 CHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYN 4724
C DEVDREERL GDPFLKPFIFLG RI + + V + E EP CQTHL+ITEPNFGLCYN
Sbjct: 1486 CSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYN 1545
Query: 4725 FDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWM 4904
FDFIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWM
Sbjct: 1546 FDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWM 1605
Query: 4905 AVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLE 5084
AVKKRLVFREEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGLFEESVNAFE+KKLE
Sbjct: 1606 AVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLE 1665
Query: 5085 KSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 5264
KSCGTI+SHSIRSD+DW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP
Sbjct: 1666 KSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1725
Query: 5265 WCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSF 5444
WCRYLE Q+RNQLPEEIYIHSNKNFDDL+ WVK FFQ+DICVESDYEAFDA QDEYILSF
Sbjct: 1726 WCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSF 1785
Query: 5445 ELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYE 5624
E+HLMKDAHFPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYE
Sbjct: 1786 EIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYE 1845
Query: 5625 WRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKE 5804
WR GQPIAFAGDDMCALNNLP+CHDFDDLFE ISLKAKVERTE+PMFCGWRLTPYGIVKE
Sbjct: 1846 WRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKE 1905
Query: 5805 PELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVT 5984
PELVYNRFQ+AIEEGKV+ECLENYAIEVSYAY LSERLYEVLKSERQIQYHQAVVRFIVT
Sbjct: 1906 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVT 1965
Query: 5985 HIDKLKTKVRDLFIEQSSDEDI 6050
HIDKLKT+V+DLF+EQSSDEDI
Sbjct: 1966 HIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2935 bits (7608), Expect = 0.0
Identities = 1439/2002 (71%), Positives = 1640/2002 (81%), Gaps = 4/2002 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDA+Y+AAAQT+I+HS+FRNKHFAYAL SYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKN-RVNGRAP 413
IELYPNGY+PHSHPLSKIFENH+LFDVLP VV+TSKLIMCSIKESKVL+FKN R +
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 414 SHTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKG-ELFSNNFIKSISG 587
G D+ S SFVNRLV+ KD+ RYTEEADAFFS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 588 KEAIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKG 767
KEA+FFHDEVHHW+K QMFSFLKRT+V+RFIFTIVYPPE+LKKFANSQNPKVYDF+V KG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 768 KLFFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITD 947
+LFFFPDGV+TEAYEQ+LN+ WLFSASHFKSGD TWTVTRHKSIY+HHLFE++ G+LI+D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 948 SKIFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1127
SKIFFSDY SIDMSK+FL+RFRSY+VFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1128 GDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKN 1307
GDDVEIKEFLFFEQFCKRLI+RQTSWGLFGYSF +KLTD+ALSKMPNV+ARMFPQWK KN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1308 TFEFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDD 1487
TFEFLFSLGTL VEIERR+C+EH+LEEWGFEVVI DENAYLDPLS+FALNENFN ERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1488 GFLDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHF 1667
G+LDRVKLPFWN+KDYD KR RAN+YDLLC F ER+ + +E GPH+MLQIEWYGI+ F
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1668 EPDVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLE 1847
+ D FI+N I EFT LE LIGK+I+ +YS+ KQA+VL CL VC+ G L+ LE
Sbjct: 541 D-DPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLE 599
Query: 1848 ELLQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDS 2027
LQ G D IE ES G+ + DA T +S LV I T D G+S
Sbjct: 600 RRLQSAGRDPIES--ESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFS--DEGES 655
Query: 2028 TPKPNC-MEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNM 2204
+ + +E + + + + FEID+ DIFR ++C
Sbjct: 656 QHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIK---------FEIDFSDIFRPHNCMN 706
Query: 2205 IHGDLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVW 2384
HG I TP DGNCFF A+ F C S+DLR +FA+WL TF+ G YAD K+ +GV+
Sbjct: 707 THGYEIPTPMDGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVF 766
Query: 2385 MEAEWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLF 2564
MEAE IYLFC++R V+L++HD ++D E VF +H GF EGH+ +RGDHFLG+ET+
Sbjct: 767 MEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFA 826
Query: 2565 PSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVP 2744
L + P G+ + L +F +P FNC +FRGR+ AFLT+VDADYGHNGM+YP NAWVP
Sbjct: 827 SDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVP 886
Query: 2745 SLNDILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYK 2924
SL++I+ IC G DFNCALINFY +SLGFH+DNERVYNDDPILTV +GE F IE+K
Sbjct: 887 SLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFK 946
Query: 2925 DDSHQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRN 3104
+ + F MTAG++FLMP+GFQ+K+RHSV E RVSITFRKH+RR+DG+PI +R+D YRN
Sbjct: 947 EQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQDNYRN 1006
Query: 3105 MCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMV 3284
+CLI A++K + R + II+KL+ N FW RFLS+GNGGS+EDC A EAL IT++L V
Sbjct: 1007 VCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFV 1066
Query: 3285 DGKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV 3464
DGKCLV DNHFS V +I +TFVSH+A K NL V GL E L S++
Sbjct: 1067 DGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEM 1126
Query: 3465 FSGYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVI 3644
+G N +QFIA FE AR+L NSFLN+TTGI LSR+LDNGE YF H + ++ K IGFDV
Sbjct: 1127 STGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLH-MSEERPKQIGFDVT 1185
Query: 3645 AICGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFI 3824
AICGFAGSGKSR LQ WLH RKR NFCVVSPR NLA DWS+KLELEPNE RKV TFE FI
Sbjct: 1186 AICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFI 1245
Query: 3825 KSEKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLT 4004
K +KSKLD+IV+DELTLFPNGYLDLLI+EL + N HC ++LLFDPLQARYHNK+DE+VL
Sbjct: 1246 KMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLN 1305
Query: 4005 FEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQA 4184
FEHDVDRLI G DLRYIYS++RMS +FNRF DVPC N Q++W DDVYSI+S
Sbjct: 1306 FEHDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVC 1365
Query: 4185 DDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVA 4364
D+ E CDVLLVESDLEKKAFS VI VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VA
Sbjct: 1366 IDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVA 1425
Query: 4365 LTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNG 4544
LTRA+ R+S C TFLGG+DEFK+K+ L+ S+LEG+ +TFE N MVKCNLI+ KKNG
Sbjct: 1426 LTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNG 1485
Query: 4545 CHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYN 4724
C DEVDREERL GDPFLKPFIFLGQRI + + V + E EP CQTHL+ITEPNFGLCYN
Sbjct: 1486 CSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYN 1545
Query: 4725 FDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWM 4904
FDFIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWM
Sbjct: 1546 FDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWM 1605
Query: 4905 AVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLE 5084
AVKKRLVFREEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGLFEESVNAFE+KKLE
Sbjct: 1606 AVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLE 1665
Query: 5085 KSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 5264
KSCGTI+SHSIRSD+DW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP
Sbjct: 1666 KSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1725
Query: 5265 WCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSF 5444
WCRYLE Q+RNQLPEEIYIHSNKNFDDL WVK FFQ+DICVESDYEAFD QDEYILSF
Sbjct: 1726 WCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSF 1785
Query: 5445 ELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYE 5624
E+HLMKDAHFPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTLCRYE
Sbjct: 1786 EIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYE 1845
Query: 5625 WRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKE 5804
WR GQPIAFAGDDMCALNNLP+CHDFDDLFE ISLKAKVERTE+PMFCGWRLTPYGIVKE
Sbjct: 1846 WRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKE 1905
Query: 5805 PELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVT 5984
PELVYNRFQ+AIEEGKV+ECLENYAIEVSYAY LSERLYEVLKSERQIQYHQAVVRFIVT
Sbjct: 1906 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVT 1965
Query: 5985 HIDKLKTKVRDLFIEQSSDEDI 6050
HIDKLKT+V+DLF+EQSSDEDI
Sbjct: 1966 HIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2933 bits (7603), Expect = 0.0
Identities = 1441/2006 (71%), Positives = 1643/2006 (81%), Gaps = 8/2006 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDA+Y+AAAQT+I+HS+FRNKHFAYAL SYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKN-RVNGRAP 413
IELYPNGY+PHSHPLSKIFENH+LFDVLP VV+TSKLIMCSIKESKVL+FKN R +
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 414 SHTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKG-ELFSNNFIKSISG 587
G D+ S SFVNRLV+ KD+ RYTEEADAFFS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 588 KEAIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKG 767
KEA+FFHDEVHHW+K QMFSFLKRT+V+RFIFTIVYPPE+LKKFANSQNPKVYDF+V KG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 768 KLFFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITD 947
+LFFFPDGV+TEAYEQ+LN+ WLFSASHFKSGD TWTVTRHKSIY+HHLFE++ G+LI+D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 948 SKIFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1127
SKIFFSDY SIDMSK+FL+RFRSY+VFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1128 GDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKN 1307
GDDVEIKEFLFFEQFCKRLI+RQTSWGLFGYSF +KLTD+ALSKMPNV+ARMFPQWK KN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1308 TFEFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDD 1487
TFEFLFSLGTL VEIERR+C+EH+LEEWGFEVVI DENAYLDPLS+FALNENFN ERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1488 GFLDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHF 1667
G+LDRVKLPFWN+KDYD KR RAN+YDLLC F ER+ + +E GPH+MLQIEWYGI+ F
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1668 EPDVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLE 1847
+ D FI+N I EFT LE LIGK+I+ +YS+ KQA+VL CL VC+ G L+ LE
Sbjct: 541 D-DPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLE 599
Query: 1848 ELLQIEGHDEIEKGYESRIK--GEMSGYEMAAMDAECAGQL--TCVSPLVLDISTLDIHD 2015
LQ G D IE E K E SG +A+ A L T +S LV I T D
Sbjct: 600 RRLQSAGRDPIESELEGLGKKTAESSG------EADAANTLLETQISGLVAFIPTFS--D 651
Query: 2016 YGDSTPKPNC-MEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVY 2192
G+S + + +E + + + + FEID+ DIFR +
Sbjct: 652 EGESQHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIK---------FEIDFSDIFRPH 702
Query: 2193 DCNMIHGDLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEK 2372
+C HG I TP DGNCFF A+ F C S+DLR +FA+WL TF+ G YAD K+
Sbjct: 703 NCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRP 762
Query: 2373 SGVWMEAEWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSA 2552
+GV+MEAE IYLFC++R V+L++HD ++D E VF +H GF EGH+ +RGDHFLG+ET+
Sbjct: 763 NGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRI 822
Query: 2553 VSLFPSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFN 2732
L + P G+ + L +F +P FNC +FRGR+ AFLT+VDADYGHNGM+YP N
Sbjct: 823 DGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHN 882
Query: 2733 AWVPSLNDILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFK 2912
AWVPSL++I+ IC G DFNCALINFY +SLGFH+DNERVYNDDPILTV +GE F
Sbjct: 883 AWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFS 942
Query: 2913 IEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVRED 3092
IE+K+ + F MTAG++FLMP+GFQ+K+RHSV E RVSITFRKH+RR+DG+PI +R+D
Sbjct: 943 IEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD 1002
Query: 3093 KYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITI 3272
YRN+CLI A++K + R + II+KL+ N FW RFLS+GNGGS+EDC A EAL IT+
Sbjct: 1003 NYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITV 1062
Query: 3273 ELMVDGKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEEL 3452
+L VDGKCLV DNHFS V +I +TFVSH+A K NL V GL E L
Sbjct: 1063 DLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEML 1122
Query: 3453 ASKVFSGYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIG 3632
S++ +G N +QFIA FE AR+L NSFLN+TTGI LSR+LDNGE YF H + ++ K IG
Sbjct: 1123 QSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLH-MSEERPKQIG 1181
Query: 3633 FDVIAICGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTF 3812
FDV AICGFAGSGKSR LQ WLH RKR NFCVVSPR NLA DWS+KLELEPNE RKV TF
Sbjct: 1182 FDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATF 1241
Query: 3813 EKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDE 3992
E FIK +KSKLD+IV+DELTLFPNGYLDLLI+EL + N HC ++LLFDPLQARYHNK+DE
Sbjct: 1242 ESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDE 1301
Query: 3993 SVLTFEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSI 4172
+VL FEHDVDRLI G DLRYIYS++RMS +FNRF DVPC N Q++W DDVYSI
Sbjct: 1302 AVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSI 1361
Query: 4173 SSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYR 4352
+S D+ E CDVLLVESDLEKKAFS VI VMTFGESQGLTF+HVCILLSESSA+SNE+R
Sbjct: 1362 TSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFR 1421
Query: 4353 WVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDV 4532
W+VALTRA+ R+S C TFLGG+DEFK+K+ L+ S+LEG+ +TFE N MVKCNLI+
Sbjct: 1422 WMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQE 1481
Query: 4533 KKNGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFG 4712
KKNGC DEVDREERL GDPFLKPFIFLG RI + + V + E EP CQTHL+ITEPNFG
Sbjct: 1482 KKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFG 1541
Query: 4713 LCYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDM 4892
LCYNFDFIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDM
Sbjct: 1542 LCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDM 1601
Query: 4893 TFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFER 5072
TFWMAVKKRLVFREEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGLFEESVNAFE+
Sbjct: 1602 TFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEK 1661
Query: 5073 KKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 5252
KKLEKSCGTI+SHSIRSD+DW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV
Sbjct: 1662 KKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 1721
Query: 5253 QFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEY 5432
QFAPWCRYLE Q+RNQLPEEIYIHSNKNFDDL+ WVK FFQ+DICVESDYEAFD QDEY
Sbjct: 1722 QFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEY 1781
Query: 5433 ILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTL 5612
ILSFE+HLMKDAHFPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTL
Sbjct: 1782 ILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTL 1841
Query: 5613 CRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYG 5792
CRYEWR GQPIAFAGDDMCALNNLP+CHDFDDLFE ISLKAKVERTE+PMFCGWRLTPYG
Sbjct: 1842 CRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYG 1901
Query: 5793 IVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVR 5972
IVKEPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAY LSERLYEVLKSERQIQYHQAVVR
Sbjct: 1902 IVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVR 1961
Query: 5973 FIVTHIDKLKTKVRDLFIEQSSDEDI 6050
FIVTHIDKLKT+V+DLF+EQSSDEDI
Sbjct: 1962 FIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 2931 bits (7599), Expect = 0.0
Identities = 1441/2006 (71%), Positives = 1642/2006 (81%), Gaps = 8/2006 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDA+Y+AAAQT+I+HS+FRNKHFAYAL SYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKN-RVNGRAP 413
IELYPNGY+PHSHPLSKIFENH+LFDVLP VV+TSKLIMCSIKESKVL+FKN R +
Sbjct: 61 IELYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDN 120
Query: 414 SHTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKG-ELFSNNFIKSISG 587
G D+ S SFVNRLV+ KD+ RYTEEADAFFS ELFSNNFI+ IS
Sbjct: 121 GALGFCGKDTSASDHTSFVNRLVAPKDIRRYTEEADAFFSSKKKNDPELFSNNFIRCISN 180
Query: 588 KEAIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKG 767
KEA+FFHDEVHHW+K QMFSFLKRT+V+RFIFTIVYPPE+LKKFANSQNPKVYDF+V KG
Sbjct: 181 KEAVFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKG 240
Query: 768 KLFFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITD 947
+LFFFPDGV+TEAYEQ+LN+ WLFSASHFKSGD TWTVTRHKSIY+HHLFE++ G+LI+D
Sbjct: 241 RLFFFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISD 300
Query: 948 SKIFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQII 1127
SKIFFSDY SIDMSK+FL+RFRSY+VFPI+IEHLYKVYSYLLCLKKPDLESGLAKLRQII
Sbjct: 301 SKIFFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQII 360
Query: 1128 GDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKN 1307
GDDVEIKEFLFFEQFCKRLI+RQTSWGLFGYSF +KLTD+ALSKMPNV+ARMFPQWK KN
Sbjct: 361 GDDVEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKN 420
Query: 1308 TFEFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDD 1487
TFEFLFSLGTL VEIERR+C+EH+LEEWGFEVVI DENAYLDPLS+FALNENFN ERVDD
Sbjct: 421 TFEFLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDD 480
Query: 1488 GFLDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHF 1667
G+LDRVKLPFWN+KDYD KR RAN+YDLLC F ER+ + +E GPH+MLQIEWYGI+ F
Sbjct: 481 GYLDRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEWYGIREF 540
Query: 1668 EPDVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLE 1847
+ D FI+N I EFT LE LIGK+I+ +YS+ KQA+VL CL VC+ G L+ LE
Sbjct: 541 D-DPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLE 599
Query: 1848 ELLQIEGHDEIEKGYESRIK--GEMSGYEMAAMDAECAGQL--TCVSPLVLDISTLDIHD 2015
LQ G D IE E K E SG +A+ A L T +S LV I T D
Sbjct: 600 RRLQSAGRDPIESELEGLGKKTAESSG------EADAANTLLETQISGLVAFIPTFS--D 651
Query: 2016 YGDSTPKPNC-MEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVY 2192
G+S + + +E + + + + FEID+ DIFR +
Sbjct: 652 EGESQHRADLEVESEGEIGKEESFEEGTLSCAEGHEAIK---------FEIDFSDIFRPH 702
Query: 2193 DCNMIHGDLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEK 2372
+C HG I TP DGNCFF A+ F C S+DLR +FA+WL TF+ G YAD K+
Sbjct: 703 NCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSKDLRSNFADWLDTFDGGSYADMGVKIRP 762
Query: 2373 SGVWMEAEWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSA 2552
+GV+MEAE IYLFC++R V+L++HD ++D E VF +H GF EGH+ +RGDHFLG+ET+
Sbjct: 763 NGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRI 822
Query: 2553 VSLFPSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFN 2732
L + P G+ + L +F +P FNC +FRGR+ AFLT+VDADYGHNGM+YP N
Sbjct: 823 DGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHN 882
Query: 2733 AWVPSLNDILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFK 2912
AWVPSL++I+ IC G DFNCALINFY +SLGFH+DNERVYNDDPILTV +GE F
Sbjct: 883 AWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFS 942
Query: 2913 IEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVRED 3092
IE+K+ + F MTAG++FLMP+GFQ+K+RHSV E RVSITFRKH+RR+DG+PI +R+D
Sbjct: 943 IEFKEQTASFLMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD 1002
Query: 3093 KYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITI 3272
YRN+CLI A++K + R + II+KL+ N FW RFLS+GNGGS+EDC A EAL IT+
Sbjct: 1003 NYRNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITV 1062
Query: 3273 ELMVDGKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEEL 3452
+L VDGKCLV DNHFS V +I +TFVSH+A K NL V GL E L
Sbjct: 1063 DLFVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEML 1122
Query: 3453 ASKVFSGYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIG 3632
S++ +G N +QFIA FE AR+L NSFLN+TTGI LSR+LDNGE YF H + ++ K IG
Sbjct: 1123 QSEMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLH-MSEERPKQIG 1181
Query: 3633 FDVIAICGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTF 3812
FDV AICGFAGSGKSR LQ WLH RKR NFCVVSPR NLA DWS+KLELEPNE RKV TF
Sbjct: 1182 FDVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATF 1241
Query: 3813 EKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDE 3992
E FIK +KSKLD+IV+DELTLFPNGYLDLLI+EL + N HC ++LLFDPLQARYHNK+DE
Sbjct: 1242 ESFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDE 1301
Query: 3993 SVLTFEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSI 4172
+VL FEHDVDRLI G DLRYIYS++RMS +FNRF DVPC N Q++W DDVYSI
Sbjct: 1302 AVLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSI 1361
Query: 4173 SSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYR 4352
+S D+ E CDVLLVESDLEKKAFS VI VMTFGESQGLTF+HVCILLSESSA+SNE+R
Sbjct: 1362 TSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFR 1421
Query: 4353 WVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDV 4532
W+VALTRA+ R+S C TFLGG+DEFK+K+ L+ S+LEG+ +TFE N MVKCNLI+
Sbjct: 1422 WMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQE 1481
Query: 4533 KKNGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFG 4712
KKNGC DEVDREERL GDPFLKPFIFLG RI + + V + E EP CQTHL+ITEPNFG
Sbjct: 1482 KKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFG 1541
Query: 4713 LCYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDM 4892
LCYNFDFIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDM
Sbjct: 1542 LCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDM 1601
Query: 4893 TFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFER 5072
TFWMAVKKRLVFREEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGLFEESVNAFE+
Sbjct: 1602 TFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEK 1661
Query: 5073 KKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 5252
KKLEKSCGTI+SHSIRSD+DW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV
Sbjct: 1662 KKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 1721
Query: 5253 QFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEY 5432
QFAPWCRYLE Q+RNQLPEEIYIHSNKNFDDL WVK FFQ+DICVESDYEAFD QDEY
Sbjct: 1722 QFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEY 1781
Query: 5433 ILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTL 5612
ILSFE+HLMKDAHFPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLAN+AFTL
Sbjct: 1782 ILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTL 1841
Query: 5613 CRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYG 5792
CRYEWR GQPIAFAGDDMCALNNLP+CHDFDDLFE ISLKAKVERTE+PMFCGWRLTPYG
Sbjct: 1842 CRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYG 1901
Query: 5793 IVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVR 5972
IVKEPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAY LSERLYEVLKSERQIQYHQAVVR
Sbjct: 1902 IVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVR 1961
Query: 5973 FIVTHIDKLKTKVRDLFIEQSSDEDI 6050
FIVTHIDKLKT+V+DLF+EQSSDEDI
Sbjct: 1962 FIVTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2930 bits (7597), Expect = 0.0
Identities = 1422/2000 (71%), Positives = 1645/2000 (82%), Gaps = 2/2000 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDAIY+AAAQT+++HS+FRNKHFAY+LNSYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKNRVNGRAPS 416
IELYPNGY+PHSHPLSKIFENHLLFDVLPGVVNTS+L+MCSIKESKVLVFK +
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 417 HTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKE 593
+ +++SL ++ SF+NRLV+SKDVSRYTEEADAFF ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLNNSHTSFINRLVASKDVSRYTEEADAFFQSKKGGPELFSRNFIKSLENKE 180
Query: 594 AIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKL 773
A+FFHDEVHHW+K QMFSFLK T+VKRFIFT+VYPPEILKKFANSQNPKVYDF+V KG+L
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 774 FFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITDSK 953
FFFPDGV+TEAYEQ+LN+ WLFSASH +SGD WTVTRHKSIYAHHLFEI+ G+L+TDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 954 IFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1133
+FFSDYNSIDMSK+FL+RFRSY+VFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1134 DVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKNTF 1313
DVEIKEFLFFEQFCKRLI+RQTSWGLFG+SF EKLTD+ALS +PN IAR+FPQWK KNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1314 EFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDDGF 1493
EFLFSLGTL V++ER++C+EHVLEEWGFEVVI DENAYLDPLSIFA+NENFN +RVDDG+
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGY 480
Query: 1494 LDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHFEP 1673
L+R++LPFWN+ DYD+KR+R N YD+L F ER++ES + GP++MLQIEWYGIK F+
Sbjct: 481 LERIRLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKV 540
Query: 1674 DVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLEEL 1853
D FISNSI EFT LE L+GK+I+P KYS+ KQA L L +C +G + ++L+ LE
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1854 LQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDSTP 2033
L+ GHD + E E++ E A L+ ++ + +I
Sbjct: 601 LKAAGHDTSDDEEE-----ELTSVEQTGPIKILADPLSFMNECLEEIPI---------ET 646
Query: 2034 KPNCMEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNMIHG 2213
+P+ E+ ++ + FEI+Y+DIF ++C HG
Sbjct: 647 EPSLEERG-----------------------QFSTDYHSEKFEINYNDIFNPHNCMNTHG 683
Query: 2214 DLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVWMEA 2393
D I TPSDGNCFF A+T F E + LR F++WL+ FN G YA + + G++MEA
Sbjct: 684 DEIPTPSDGNCFFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEA 743
Query: 2394 EWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLFPSV 2573
E IYLFCVFRGV+L++HD + E V+ VH GF EGH+ RG+HF+G+ET++ +L
Sbjct: 744 ELIYLFCVFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDP 803
Query: 2574 LLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVPSLN 2753
LL D P GF + +T F P FNC +FRGR+AAF+T+VDADYGHNGM+YP N+WVPSL+
Sbjct: 804 LLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLD 863
Query: 2754 DILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDS 2933
+I++ICG G DFNCALINFYEA +SLGFH+DNERVYNDDPILTV GE F IE+KD
Sbjct: 864 EIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQV 923
Query: 2934 HQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRNMCL 3113
F MTAG++FLMPKGFQKK+RHSV RVSITFRKHVRR++G+PI +RE+ Y+N CL
Sbjct: 924 TSFLMTAGSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENYKNTCL 983
Query: 3114 INAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVDGK 3293
I+A +K +KRS + II+KL+ N FW R+LSEGNGGSIEDCQ A EAL +T++L V GK
Sbjct: 984 IDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGK 1043
Query: 3294 CLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV-FS 3470
+V DNHFS ++ + +TFVSH+ KGN++V +G E L+ V +
Sbjct: 1044 YVVLGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAA 1103
Query: 3471 GYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVIAI 3650
G N++QF A FE ARIL NSFLN+TTGI L ++LDNGE YF HIL+ D +K IG DV +
Sbjct: 1104 GVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK-DRVKQIGIDVTMV 1162
Query: 3651 CGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKS 3830
CGFAGSGKSR LQ WLH RK+ NFCVVSPRTNLA DW++KLELEPNE RKV TFEKFIK+
Sbjct: 1163 CGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKT 1222
Query: 3831 EKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLTFE 4010
+KSKLDLIVIDELTLFPNGYLDLL++EL VNRHC ++LLFDPLQAR+HNK+DES+LTFE
Sbjct: 1223 DKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFE 1282
Query: 4011 HDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADD 4190
HDVDRL+ G + YIYST+RMS +FNRF DVPC N R Q++W FDDVYSI S D
Sbjct: 1283 HDVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSD 1342
Query: 4191 RNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALT 4370
R E CDVLLVESDLEKKAFS ++ VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALT
Sbjct: 1343 RQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1402
Query: 4371 RARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCH 4550
R+R R SLC TFLGG++EFKVK+K LI S+L+GE +TF N M+KCNLIR K+NGC
Sbjct: 1403 RSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR 1462
Query: 4551 DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFD 4730
DEVDREERL GDPFLKPFIFLGQRI ++ V++ + EP CQTHL+ITEPNFGLCYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522
Query: 4731 FIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAV 4910
FIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582
Query: 4911 KKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKS 5090
+KRLVFREEEENYQRL +AHL+GGLLY NFKKKMGL F FDQGL EES+NAFE+KKLEKS
Sbjct: 1583 RKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642
Query: 5091 CGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 5270
CGTI+SHSIRSDIDW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702
Query: 5271 RYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFEL 5450
RYLETQ+RNQLPEEIYIHSNKNFDDL++WVKKFFQRDICVESDYEAFDASQDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEI 1762
Query: 5451 HLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR 5630
HLMKDAHFP+ +IDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWR
Sbjct: 1763 HLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822
Query: 5631 SGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPE 5810
GQPIAFAGDDMCALNNL VCHDFDDLFE ISLKAKVERTETPMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882
Query: 5811 LVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHI 5990
LVYNRFQVAIEEGKVLECLENYAIEVSYAY LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942
Query: 5991 DKLKTKVRDLFIEQSSDEDI 6050
DKLKTKVRDLF+EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 2927 bits (7589), Expect = 0.0
Identities = 1423/2000 (71%), Positives = 1645/2000 (82%), Gaps = 2/2000 (0%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLG 236
MALMSNKTAIESILGNFEKKHVDAIY+AAAQT+++HS+FRNKHFAY+LNSYQKK+ASK+G
Sbjct: 1 MALMSNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVG 60
Query: 237 IELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKNRVNGRAPS 416
IELYPNGY+PHSHPLSKIFENHLLFDVLPGVVNTS+L+MCSIKESKVLVFK +
Sbjct: 61 IELYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQ 120
Query: 417 HTGPASVDSLVST-VSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKE 593
+ +++SL ++ SF+NRLV+SKDVSRYTEEADAFF ELFS NFIKS+ KE
Sbjct: 121 VSDLNALNSLDNSHTSFINRLVASKDVSRYTEEADAFFQSKKGSPELFSRNFIKSLENKE 180
Query: 594 AIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKL 773
A+FFHDEVHHW+K QMFSFLK T+VKRFIFT+VYPPEILKKFANSQNPKVYDF+V KG+L
Sbjct: 181 AVFFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRL 240
Query: 774 FFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDLITDSK 953
FFFPDGV+TEAYEQ+LN+ WLFSASH +SGD WTVTRHKSIYAHHLFEI+ G+L+TDSK
Sbjct: 241 FFFPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSK 300
Query: 954 IFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 1133
+FFSDYNSIDMSK+FL+RFRSY+VFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD
Sbjct: 301 LFFSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGD 360
Query: 1134 DVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWKDKNTF 1313
DVEIKEFLFFEQFCKRLI+RQTSWGLFG+SF EKLTD+ALS +PN IAR+FPQWK KNTF
Sbjct: 361 DVEIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTF 420
Query: 1314 EFLFSLGTLKVEIERRICYEHVLEEWGFEVVIADENAYLDPLSIFALNENFNVERVDDGF 1493
EFLFSLGTL V++ER++C+EHVLEEWGFEVVI DENAYLDPLSIFA+NENFN R DDG+
Sbjct: 421 EFLFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGY 480
Query: 1494 LDRVKLPFWNMKDYDIKRRRANRYDLLCRNFSSERELESKENGPHRMLQIEWYGIKHFEP 1673
L+R++LPFWN+ DYD+KRRR N Y++L F ER +ES + GP++MLQIEW+GIK F+
Sbjct: 481 LERIRLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKV 540
Query: 1674 DVFISNSIHEFTTLELLIGKKINPSKYSFKKQANVLELCLKQVCKDGCEVYSLDSWLEEL 1853
D FISNSI EFT LE L+GK+I+P KYS+ KQA L L +C +G + ++L+ LE
Sbjct: 541 DPFISNSITEFTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEGLDGFNLEEHLERR 600
Query: 1854 LQIEGHDEIEKGYESRIKGEMSGYEMAAMDAECAGQLTCVSPLVLDISTLDIHDYGDSTP 2033
L+ GHD + E E++ E A A L + + +I
Sbjct: 601 LKAAGHDISDDEEE-----ELTSAEQAGPIKILADPLGFMKECLEEIPI---------ET 646
Query: 2034 KPNCMEQDIKXXXXXXXXXXXXXXXXXXQGLAHKSNELCDPFEIDYHDIFRVYDCNMIHG 2213
+P+ E+ ++ + FEI+Y+DIF ++C HG
Sbjct: 647 EPSLEERG-----------------------QFSTDYHSERFEINYNDIFNPHNCMNTHG 683
Query: 2214 DLINTPSDGNCFFHAYTHAFVCESSEDLRVSFANWLLTFNNGKYADQSTKVEKSGVWMEA 2393
D I TPSDGNCFF A+T F E + LR F++WL+ FN G YA + + GV+MEA
Sbjct: 684 DEIPTPSDGNCFFSAFTETFEVERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEA 743
Query: 2394 EWIYLFCVFRGVSLVVHDISDDVEKVFIVHDGFVEGHVARRGDHFLGMETFSAVSLFPSV 2573
E IYLFCVFRGV+L++HD + + E V+ VH GF EGH+ RG+HF+G+ET++ +L
Sbjct: 744 ELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDP 803
Query: 2574 LLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADYGHNGMMYPFNAWVPSLN 2753
LL D P GF + +T F+ P FNC +FRGR+AAF+T+VDADYGHNGM+YP N+WVPSL+
Sbjct: 804 LLGDIPCGFSEEITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLD 863
Query: 2754 DILEICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDS 2933
+I++ICG G DFNCALINFYEA +SLGFH+DNERVYNDDPILTV GE F IE+K
Sbjct: 864 EIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQV 923
Query: 2934 HQFQMTAGTYFLMPKGFQKKSRHSVICETSRVSITFRKHVRRMDGTPITVREDKYRNMCL 3113
F MTAG++FLMPKGFQKK+RHSV E SRVSITFRKHVRR++G+PI +RE+ Y+N L
Sbjct: 924 TSFLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENYKNTRL 983
Query: 3114 INAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVDGK 3293
I+A +K +KRS + II+KL+ N FW R+LSEGNGGSIEDCQ A EAL +T++L V+GK
Sbjct: 984 IDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGK 1043
Query: 3294 CLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMANKGNLSVTKGLKEELASKV-FS 3470
C+V +NHFS ++A + +TFVSH+ KG+++V +G E L+ V +
Sbjct: 1044 CVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAA 1103
Query: 3471 GYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGFDVIAI 3650
G N++QF A FE ARIL NSFLN+TTGI L ++LDNGE YF HIL+ D +K IG DV +
Sbjct: 1104 GVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK-DRVKQIGIDVTVV 1162
Query: 3651 CGFAGSGKSRVLQGWLHGRKRSNFCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKS 3830
CGFAGSGKSR LQ WLH RK+ NFCVVSPRTNLA DW++KLELEPNE RKV TFEKFIK+
Sbjct: 1163 CGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKT 1222
Query: 3831 EKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHCLVVLLFDPLQARYHNKLDESVLTFE 4010
+KSKLDLIVIDELTLFPNGYLDLL++EL VNRHC ++LLFDPLQARYHNK+DES+LTFE
Sbjct: 1223 DKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFE 1282
Query: 4011 HDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADD 4190
HDVDRL+ G + YIYST+RMS +FNRF DVPC N R Q++W FDDVYSI S D
Sbjct: 1283 HDVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSD 1342
Query: 4191 RNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALT 4370
R E CDVLLVESDLEKKAFS ++ VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALT
Sbjct: 1343 RQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1402
Query: 4371 RARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCH 4550
R+R R SLC TFLGG++EFKVK+K LI S+L+GE +TF N M+KCNLIR K+NGC
Sbjct: 1403 RSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR 1462
Query: 4551 DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFD 4730
DEVDREERL GDPFLKPFIFLGQRI ++ V++ + EP CQTHL+ITEPNFGLCYNFD
Sbjct: 1463 DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFD 1522
Query: 4731 FIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAV 4910
FIREKEQREYREDML TNQFCDSY+K +I GKRET GPLRFKAIYPKHSADDDMTFWMAV
Sbjct: 1523 FIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAV 1582
Query: 4911 KKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKS 5090
+KRLVFREEEENYQRL +AHL+GGLLY NFKKKMGL F FDQGL EES+NAFE+KKLEKS
Sbjct: 1583 RKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKS 1642
Query: 5091 CGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 5270
CGTI+SHSIRSDIDW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC
Sbjct: 1643 CGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWC 1702
Query: 5271 RYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFEL 5450
RYLETQ+RNQLPEEIYIHSNKNFDDL++WVKKFFQRDICVESDYEAFDASQDEYILSFE+
Sbjct: 1703 RYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEV 1762
Query: 5451 HLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR 5630
HLMKDAHFPQ +IDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT+CRYEWR
Sbjct: 1763 HLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWR 1822
Query: 5631 SGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPE 5810
GQPIAFAGDDMCALNNL VCHDFDDLFE ISLKAKVERTETPMFCGWRLTPYGIVKEPE
Sbjct: 1823 RGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPE 1882
Query: 5811 LVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHI 5990
L YNRFQVAIEEGKVLECLENYAIEVSYAY LSERLYEVLKSERQ+QYHQAVVRFIVTHI
Sbjct: 1883 LAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHI 1942
Query: 5991 DKLKTKVRDLFIEQSSDEDI 6050
DKLKTKVRDLF+EQSSDEDI
Sbjct: 1943 DKLKTKVRDLFLEQSSDEDI 1962
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1106 bits (2860), Expect = 0.0
Identities = 529/614 (86%), Positives = 570/614 (92%)
Frame = +3
Query: 4209 VLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALTRARKRI 4388
VLLVESDLEKKAFS +I VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALTRA+ R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4389 SLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCHDEVDRE 4568
S C T LGG+D+FK+KK L+ S+L+GE +TFE N MVKCNLI+ KKNGC DEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4569 ERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFDFIREKE 4748
ERL GDPFLKPFIFLGQRI ++ +++ E +EPRCQTHL+ITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4749 QREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAVKKRLVF 4928
QREYREDML TNQFCDSY+K +I GKRET GP+RFKAIYPKHSADDDMTFWMAVKKRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 4929 REEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKSCGTIQS 5108
REEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGL E+S+NAFERKKLEKS GTI+S
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIKS 300
Query: 5109 HSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 5288
HSIRSDIDW LNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 5289 VRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFELHLMKDA 5468
+RNQLPEEIY+HSNKNFDDL+ WVKKFFQRDI VESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 5469 HFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRSGQPIA 5648
+FPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR GQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 5649 FAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRF 5828
FAGDDMCALNNLPVCH FDDLFE +SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 5829 QVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 6008
QVAIEEGKV+ECLENYAIEVSYAY LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 6009 VRDLFIEQSSDEDI 6050
VRDLF+EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 1103 bits (2853), Expect = 0.0
Identities = 528/614 (85%), Positives = 569/614 (92%)
Frame = +3
Query: 4209 VLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALTRARKRI 4388
VLLVESDLEKKAFS +I VMTFGESQGLTF+HVCILLSESSA+SNE+RW+VALTRA+ R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4389 SLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLIRDVKKNGCHDEVDRE 4568
S C T LGG+D+FK+KK L+ S+L+GE +TFE N MVKCNLI+ KKNGC DEVDRE
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCSDEVDRE 120
Query: 4569 ERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFDFIREKE 4748
ERL GDPFLKPFIFLGQRI ++ +++ E +EPRCQTHL+ITEPNFGLCYNFDFIREKE
Sbjct: 121 ERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREKE 180
Query: 4749 QREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAVKKRLVF 4928
QREYREDML TNQFCDSY+K +I GKRET GP+RFKAIYPKHSADDDMTFWMAVKKRL+F
Sbjct: 181 QREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLIF 240
Query: 4929 REEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKSCGTIQS 5108
REEEENYQRL +AHL+GGLLY+NFK K+GL F FDQGL E+S+NAFERKKLEKS GTI+S
Sbjct: 241 REEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIRS 300
Query: 5109 HSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 5288
HSIRSDIDW LNDVFLFMKSQL TKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ
Sbjct: 301 HSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQ 360
Query: 5289 VRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFELHLMKDA 5468
+RNQLPEEIY+HSNKNFDDL+ WVKKFFQRDICVESDYEAFDASQDEYILSFE+HLMKDA
Sbjct: 361 IRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDA 420
Query: 5469 HFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRSGQPIA 5648
+FPQ VIDAY DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWR GQPIA
Sbjct: 421 NFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPIA 480
Query: 5649 FAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRF 5828
FAGDDMCALNNLPVCH FDDLFE +SLKAKVERTE+PMFCGWRLTPYGIVKEPELVYNRF
Sbjct: 481 FAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRF 540
Query: 5829 QVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 6008
QVAIEEGKV+ECLENYAIEVSYAY LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKTK
Sbjct: 541 QVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKTK 600
Query: 6009 VRDLFIEQSSDEDI 6050
VRDLF+EQSSDEDI
Sbjct: 601 VRDLFLEQSSDEDI 614
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus] gi|571026291|emb|CDF66416.2|
replication-associated polyprotein [Apricot vein clearing
associated virus]
Length = 1679
Score = 961 bits (2485), Expect = 0.0
Identities = 556/1198 (46%), Positives = 735/1198 (61%), Gaps = 68/1198 (5%)
Frame = +3
Query: 2655 FRGREAAFLTRV-DADYGHNGMMYPFNAWVPSLNDILEICGMGSD--FNCALINFYEAGA 2825
FRGR + F R + DYGHNG Y W L+D + SD FN L+ Y+ G+
Sbjct: 511 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP-----SDLIFNACLVQVYDKGS 565
Query: 2826 SLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHS 3005
+GFHKDNE+ Y PILTV G ALF+ D F +T G L+ + +K RH
Sbjct: 566 KIGFHKDNEQCYAGYPILTVNF-GLALFEF---DSGEAFNLTDGDTILLSGDYLRKKRHR 621
Query: 3006 VIC-ETSRVSITFRKHVRRMDGTPITVREDKYR---NMCLINAIAKGIKRSSEEIISKLR 3173
V SR+S+TFR+HV RM+ +P+ + + N C+I+A+A + ++S + +K+
Sbjct: 622 VTSLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIV 681
Query: 3174 ATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVDGKCLVXXXXXXXXXXXXXDNHF 3353
A + D +M + + TI ++++ + N
Sbjct: 682 AQRPDLLQ---------CLVDDEMLDKQTTETICVIMNLHATIVNEDEGETMEL---NPE 729
Query: 3354 SYVSAGANIPKTFVSHMANKGNLSVTKGL----KEELASKVFSGYNE--------LQFIA 3497
+ + ++ + +++ N KG+ +LA+ + E +Q+ A
Sbjct: 730 GLIKSSFSVLDEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQA 789
Query: 3498 QFESARILTNSFLNLTTGISLSRSLDNGEGYFNHI-----LRQDHMKDIGFDVIAICGFA 3662
E A L NSFL TTG L+ + G +F + + D ++++ F + GFA
Sbjct: 790 DHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSF----VPGFA 845
Query: 3663 GSGKSRVL-----------------------QGWLHGRKRSN------FCVVSPRTNLAN 3755
GSGKS L G H +K N C++SPR NLA+
Sbjct: 846 GSGKSLGLLNEVKRISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLAD 905
Query: 3756 DWSYKLELEPNEWRKVMTFEKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQVNRHC 3935
DW KL E V TFE K+ SK+ LIV+DELTLFPNGY+DLLIF + + C
Sbjct: 906 DWETKLGPSALEHCSVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDC 965
Query: 3936 LVVLLFDPLQARYHNKLDESVLTFEHDVDRLISGVDLRYIYSTYRMSP--FFNRFCDVPC 4109
++L+FDPLQARY + D ++L EHDVD ++ ++ Y+Y + R FN F D+
Sbjct: 966 KLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKK 1025
Query: 4110 --LNDEPRDASQKIWF----FDDVYSISSQADDRNEHCDVLLVESDLEKKAFSSVIKVMT 4271
++ E R+ + F + ++ ++ + +++ DVLLV S E F+S IK MT
Sbjct: 1026 NEVDAESRETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMT 1085
Query: 4272 FGESQGLTFDHVCILLSESSASSNEYRWVVALTRARKRISLCCTFLGGLDEFKVKKKGGL 4451
FGESQGLT DH ILLSE+SA S+++RW+VALTRARK+++ C L GL+ F + L
Sbjct: 1086 FGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRL 1145
Query: 4452 ILSLLEGEVMTFELFNRMVKCNLIRDVKKNGC--HDEVDREERLSGDPFLKPFIFLGQRI 4625
+ +++ ++T + + MV+ L VK G DEVDRE+RL GD FLK IFLGQR
Sbjct: 1146 VAAVINKGLVTKKRLSSMVRAKL-NYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQR- 1203
Query: 4626 AQENCVVDDCEPDEP-----RCQTHLFITEPNFGLCYNFDFIREKEQREYREDMLATNQF 4790
C + + E EP +TH F+ + NF CYNFD IR KE RE+R TNQF
Sbjct: 1204 ----CEIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQF 1259
Query: 4791 CDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLQKAH 4970
D+YE K+ T GPLRF+AIYP+H ADDD+TF MAV KRL F E + ++L++AH
Sbjct: 1260 IDNYEIVQHVQKKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAH 1319
Query: 4971 LIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKSCGTIQSHSIRSDIDWKLNDV 5150
G +L+ N +K+GL+F +D LFEE VN FE KKLEKS + +HSIRSD DW N V
Sbjct: 1320 GTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWV 1379
Query: 5151 FLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQVRNQLPEEIYIHSN 5330
FLFMKSQLCTKYEKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN
Sbjct: 1380 FLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSN 1439
Query: 5331 KNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFELHLMKDAHFPQIVIDAYTDLK 5510
KNF+DL+ WVKK D+CVESDYEAFDASQD+YILSFEL +M+ H P+ +I AY DLK
Sbjct: 1440 KNFNDLNEWVKKHAGDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLK 1499
Query: 5511 CKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRSGQPIAFAGDDMCALNNLPV 5690
LGCKLGHF+IMRFTGEF TFLFNTLANMAFT+CRYEW SG PIAFAGDDMCAL NL V
Sbjct: 1500 VNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKV 1559
Query: 5691 CHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLE 5870
F+++FE ISLKAK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLE
Sbjct: 1560 TDQFNNVFEKISLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLE 1619
Query: 5871 NYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLFIEQSSDE 6044
NYAIEVSYAY L ERL+++LK E Q++YHQAVVRFIV H+ L+TKV+DLF EQS+++
Sbjct: 1620 NYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677
Score = 300 bits (767), Expect = 1e-77
Identities = 176/459 (38%), Positives = 257/459 (55%), Gaps = 6/459 (1%)
Frame = +3
Query: 57 MALMSNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASK-- 230
MAL+ +T ++LG+F +KHV+ IY+ + R F QKKVAS
Sbjct: 1 MALLY-RTPQVNLLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRG 59
Query: 231 -LGIELYPNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMCSIKESKVLVFKNRVNGR 407
LG+ L+P Y+ HSHP SK+ ENH+L +VLPG + T + SIK SKV +
Sbjct: 60 WLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHI-TGSWVFSSIKPSKVESLATK---- 114
Query: 408 APSHTGPASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFF--SLSNPKGELFSNNFIKSI 581
G SV + +NRL+ +KD RY + D+ S+S ++ F++++
Sbjct: 115 -----GKKSV------LKTINRLLCAKDFGRYDVDTDSSVIRSISREAPDILPEPFVRAV 163
Query: 582 SGKEAIFFHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVH 761
G+ + HDEVHHW+ M FL R R RF+F++VYP E+L SQNPK+Y FQ
Sbjct: 164 KGRN-VMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDS 222
Query: 762 KG-KLFFFPDGVRTEAYEQQLNLHWLFSASHFKSGDSTWTVTRHKSIYAHHLFEITAGDL 938
K K+ FFPDG +E YEQ+ NL WLF ASHF++ S WTV R S Y+HHLFE+ G+
Sbjct: 223 KSDKIVFFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNY 282
Query: 939 ITDSKIFFSDYNSIDMSKMFLNRFRSYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLR 1118
TD FF+D+ +ID+ +F +RF D PIS + + +VYSYL+CLKKPD++S +AKL+
Sbjct: 283 FTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLK 342
Query: 1119 QIIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMPNVIARMFPQWK 1298
Q++GDD++++ +FF R++ + LF S + K L P+ + F WK
Sbjct: 343 QLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWK 402
Query: 1299 DKNTFEFLFSLGTLKVEIERRICYEHVLEEWGFEVVIAD 1415
N F+ LG + E R++ E W + +A+
Sbjct: 403 SGN---FIKKLG--EHEAARQVQEGAYPEGWMINLFLAN 436
>dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1877
Score = 644 bits (1662), Expect = 0.0
Identities = 427/1175 (36%), Positives = 616/1175 (52%), Gaps = 45/1175 (3%)
Frame = +3
Query: 2658 RGREAAFLTRVDADYGHNGMMYP-FNAWVPSLNDILEICGM-GSDFNCALINFYEAGASL 2831
R + A F Y H+ + YP F A P I+ G DFN AL+ YE G +L
Sbjct: 696 RRKAAYFCLDFPLVYFHDKVSYPTFEATGPIKQAIINAKNKWGIDFNSALVQVYEDGCNL 755
Query: 2832 GFHKDNERVYNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV- 3008
HKDNE Y+DD ILT+ + G+A F D+ + G LMP GFQK+++H+V
Sbjct: 756 PLHKDNEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQ 813
Query: 3009 ICETSRVSITFRKHVRRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGS 3188
+ R S+T R H +R V+ K R CL ++IA+ I + EE++ A
Sbjct: 814 VISEGRTSVTMRVH-KRDFSFESKVKFVKGRLDCLFSSIAEVIHKKPEEVM----AFVPH 868
Query: 3189 FWGRFLSEGNGGSIEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVS 3365
R +S G SI+D + EA I IE D G NHF
Sbjct: 869 ILDRCIS-NKGCSIDDARAICEAYEIKIECEGDCGLVECGSVGLSVGRLLLRGNHFRV-- 925
Query: 3366 AGANIPKTFVSHMANKGNLSVTKGLKEEL-------ASKVFSGYNELQFIAQFESARILT 3524
A++ ++ + +AN G+ + + V N ++ E A L
Sbjct: 926 --ASVRRSSIDSLANSSKEIKANGVLDHVMFNFHDRLKAVEPDLNSVEVKVNLERAGKLL 983
Query: 3525 NSFLNLTTGISLSRSLDNG----EGYFNHILRQDHMKDIGFD------------------ 3638
S ++ TGI S G +G + + MK I D
Sbjct: 984 KSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMKMIKDDDSNEKNEVSEKLQGLNFF 1043
Query: 3639 ---VIAICGFAGSGKSRVLQGWLHG--RKRSNFCVVSPRTNLANDWSYKLELEPNEWRKV 3803
+ I GFAGSGKS +Q +H + VV PR LA DWS K E + +
Sbjct: 1044 KKKIYGIFGFAGSGKSHAIQNLIHSEFKNSQGILVVCPRKFLAKDWSEKGVNE----KDI 1099
Query: 3804 MTFEKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYH 3977
TFE +KS+ L ++DE++L P G+ DLL+ +L V + +V + DPLQA Y
Sbjct: 1100 KTFESALKSDIKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKVSTIVCIGDPLQAGYF 1159
Query: 3978 NKLDESVLTFEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFD 4157
D+ L+ + ++ RL ++Y + +YR++ F + + +ND Q+ +
Sbjct: 1160 CPKDDGYLSKDGEITRLFK-EGVKYKWYSYRINRFMAKKLGISTMNDF-TGIDQQSLIYK 1217
Query: 4158 DVYSISSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSAS 4337
D+ S + N H +V+LV S +EK+ +S+ VMTFGESQGLTF+ I+LSE +
Sbjct: 1218 DMPSAQHFLREGNNHPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKL 1277
Query: 4338 SNEYRWVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCN 4517
++ +VA+TR R+ G +++ K GL+ + G + E
Sbjct: 1278 CSDAHVMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILNSSSVK 1337
Query: 4518 LI---RDVKKNGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHL 4688
L+ +DV K DE+DRE RL GD +LK I+LG+R + + E + H+
Sbjct: 1338 LVLSEKDVAKGAGIDEMDREVRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTESAIKCHI 1397
Query: 4689 FITEPNFGLCYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYP 4868
+ + L + I+ +E RE++ +NQF + + K + + F+A+YP
Sbjct: 1398 PVCS-HQTLMPELEKIQAREYREFKGRDGWSNQFREEAGPNW-KFPYKVNQAMNFEAVYP 1455
Query: 4869 KHSADDDMTFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFE 5048
+H DDD+TF A+KKRL F NY +L+ + G L + F K + + DQ L +
Sbjct: 1456 RHKMDDDLTFLAAIKKRLRFDNVANNYAKLKASENRGKYLAKVFLKHVPIKCGRDQRLLD 1515
Query: 5049 ESVNAFERKKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLA 5228
+ FE KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLA
Sbjct: 1516 QCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLA 1575
Query: 5229 CFQHLILVQFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEA 5408
CF H ILV+F+PWCRY E + LP+ YIH KNF +L+ + ++F +CVESDY A
Sbjct: 1576 CFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARRFSNGSMCVESDYTA 1635
Query: 5409 FDASQDEYILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNT 5588
FD SQD IL+FE+ L++ + + ++ +Y +KC LGC+LG F+IMRFTGEF TFLFNT
Sbjct: 1636 FDVSQDHTILAFEVELLRHFGWDENILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNT 1695
Query: 5589 LANMAFTLCRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFC 5768
LANM FT CRYE G PI FAGDDMCAL NL + + +SLKAKV RT+ PMFC
Sbjct: 1696 LANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHNFILSKLSLKAKVNRTKVPMFC 1755
Query: 5769 GWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQI 5948
GWRL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY+L ERLY L+ E Q+
Sbjct: 1756 GWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QL 1814
Query: 5949 QYHQAVVRFIVTHIDKLKTKVRDLF--IEQSSDED 6047
YHQ + RF + + L+ R +E SDED
Sbjct: 1815 NYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1849
Score = 186 bits (471), Expect = 2e-43
Identities = 132/408 (32%), Positives = 204/408 (50%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + + + ++F++ L K+ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPERTKEWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P YV HSHP K ENHLLF+V+ ++ + C SIK +K+ + G
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMER---------LG 114
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
P SV T +NRLV+SKD +RY L+ P+ K IF
Sbjct: 115 PNSV----RTYDILNRLVTSKDKARYGP-------LATPERS--------PCPKKTNIFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+WS+ Q+ SFL R K T+V+PPEIL + +S P +Y F++H L + P
Sbjct: 156 HDEIHYWSRTQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHF-----KSG-DSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L S+S K+G + + V+ S+ +HHLF I DL+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVHNKKTGVELRYQVSLVYSLGSHHLFHIFPTEDLLK 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S+ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
+ D+ I+ ++F R+ K G + SF E + D K+P
Sbjct: 334 LSDADISIESVFMVQEFASRIEKNGV--GSWSCSFWECMKDWFFDKLP 379
>ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
gi|57639322|gb|AAW55581.1| 216 kDa protein [Apricot
pseudo-chlorotic leaf spot virus]
Length = 1892
Score = 644 bits (1660), Expect = 0.0
Identities = 419/1162 (36%), Positives = 627/1162 (53%), Gaps = 46/1162 (3%)
Frame = +3
Query: 2700 YGHNGMMYP-FNAWVPSLNDILEIC-GMGSDFNCALINFYEAGASLGFHKDNERVYNDDP 2873
Y HN + YP F A + IL+ DFN +LI YE G+ +G HKDNE Y+DD
Sbjct: 722 YFHNNVSYPSFEATMKIKECILKARRDWNIDFNASLIQIYEKGSIIGMHKDNEECYDDDG 781
Query: 2874 ILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSVICETS-RVSITFRKH 3050
+LT+ +KG A F + D+ ++ G LMP G+QKK +H V E+ R+S+T R H
Sbjct: 782 VLTLNVKGNATFSVSCHDNV--IELKEGNELLMPPGYQKKFKHGVKSESEGRISVTLRVH 839
Query: 3051 VRRMD-GTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGS 3227
R + + + KY C+I+++A I++ +E+ + + + R +S G S
Sbjct: 840 KRDFSFRSKVGFIKGKYD--CMISSLASLIRKDQDEMCAFVP----NVLNRCISN-KGCS 892
Query: 3228 IEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHM 3404
I+D + A + + D G V NHFS VS+ + + +
Sbjct: 893 IDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNLRGNHFSVVSSRRSNLDSLANSK 952
Query: 3405 ANKGNLSVTKGL----------------KEEL------ASKVFSGYNE-----LQFIAQF 3503
++K V + K E+ A K+ NE + A
Sbjct: 953 SDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLLRAVKLLKSLNEGMTGIVSHNAAH 1012
Query: 3504 ESARIL--TNSFLNLTTGISLSRSLDNGEGYFNHILRQDHMKDIGF---DVIAICGFAGS 3668
E R++ NS + + + LD+ + + R + +K++ F V + GFAGS
Sbjct: 1013 EGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKE--RSNLIKELNFINKTVYGVFGFAGS 1070
Query: 3669 GKSRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKSEKSK 3842
GKS +Q + + + VV PR LA+DWS K + + + TFE +K +
Sbjct: 1071 GKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEK----GVDSKDIKTFESALKMDIKG 1126
Query: 3843 LDLIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNKLDESVLTFEHD 4016
++ + DE++L P GY+DL+I ++ + + ++ L DPLQA Y + D+++L+ E +
Sbjct: 1127 KNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGDPLQASYFSAKDDNILSKESE 1186
Query: 4017 VDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADDRN 4196
+ RL + Y + +YR++ F V +N+ +Q + + D+ S D
Sbjct: 1187 IKRLFKD-GVNYKWYSYRINKFIASKLGVCGMNEFIGIDNQSVTY-KDMPSAFHFMDSAK 1244
Query: 4197 EHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALTRA 4376
H +V+LV S +EK+ +S+ VMTFGESQGLTF I+LSE + ++ +VA+TR
Sbjct: 1245 NHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIVLSEEAKLCSDAHIMVAITRF 1304
Query: 4377 RKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRM--VKCNLIRDVKKNGCH 4550
RK GG ++ KGGL+ ++ + E M V L V K G
Sbjct: 1305 RKGFCFVLGSKGGKEDNLRTLKGGLLQRIVSNLGASREFITNMSSVPLKLSEKVTKKGAG 1364
Query: 4551 -DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNF 4727
DE+DREERL GD +LK IFLG+R + E ++ + H+ + L
Sbjct: 1365 IDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVELEDSAIKCHIPVCSVQT-LGPEL 1423
Query: 4728 DFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMA 4907
I+ +E RE++ +NQ + + + +AIYP+H DDD+TF A
Sbjct: 1424 GRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKVNQAMSHEAIYPRHRMDDDLTFLAA 1483
Query: 4908 VKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEK 5087
+KKRL F ENY + + + G L + F +K+ + +Q L + FE KL K
Sbjct: 1484 IKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQIKSGRNQSLLDLCRQEFEETKLSK 1543
Query: 5088 SCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPW 5267
S TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACFQH ILV+F+PW
Sbjct: 1544 SSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFQHEILVKFSPW 1603
Query: 5268 CRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFE 5447
CRY E + + LP+ Y+H KNF +L+ + K+F +CVESDY AFD SQD IL+FE
Sbjct: 1604 CRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFSNGSVCVESDYTAFDVSQDHTILAFE 1663
Query: 5448 LHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEW 5627
+ ++ + + +I++Y +KC LGC+LG F+IMRFTGEF TFLFNTLANMAFT CRY+
Sbjct: 1664 VEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYQV 1723
Query: 5628 RSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEP 5807
SG PI FAGDDMCAL ++ + + + E +SLKAKV RT+ PMFCGWRL G++KEP
Sbjct: 1724 PSGTPICFAGDDMCALRDIKEIPNHEHILEKLSLKAKVNRTKVPMFCGWRLCSDGLIKEP 1783
Query: 5808 ELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIV-- 5981
L+Y R QVAIE +++E +++Y +E S+AY+L ERLY L+ E Q+ YHQ + RF +
Sbjct: 1784 CLIYERLQVAIENNRLMEVIDSYFLEFSFAYKLGERLYSYLEIE-QLNYHQVLTRFFIKN 1842
Query: 5982 THIDKLKTKVRDLFIEQSSDED 6047
H+ + ++K + SDED
Sbjct: 1843 KHLLRGESKANISELIWLSDED 1864
Score = 166 bits (419), Expect = 2e-37
Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + + + + + + + +F+Y+L ++ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQSQQEILGTLQFERIQKEEELKVNNFSYSLPEKGREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P Y HSHP K ENH+L++V ++ + C SIK +K+ K GR
Sbjct: 64 PYSYNVHSHPCCKTLENHILYNVAASYLSKYAYVACLSIKANKMS--KMEKLGR------ 115
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
S V +NRLV SKD +RY + PK SN +F
Sbjct: 116 -----SSVRNYDIINRLVVSKDKARYGPSVSPE-RVGCPKN---SN-----------LFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+W+K Q+ SFL T+ + T+V+PPEIL + +S P +Y F++ L + P
Sbjct: 156 HDEIHYWNKGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHFK------SGDSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L + + G + ++ S+ +HHLF I +LI
Sbjct: 216 DGVRSESYSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIP 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S K++ YL LKKPD +S +AKLRQ
Sbjct: 276 EETRRFGPYDLFDVGALFVKPVRVPIQDFPLST--FKKIFIYLSSLKKPDEQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
+ DV I+ ++F +R+ K + SF E + D +P
Sbjct: 334 LCDSDVSIESVFLIQEFAQRVEKDGIQ--RWSCSFWEHIKDRFFDALP 379
>gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1878
Score = 643 bits (1658), Expect = 0.0
Identities = 437/1220 (35%), Positives = 628/1220 (51%), Gaps = 45/1220 (3%)
Frame = +3
Query: 2523 HFLGMETFSAVSLFPSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAAFLTRVDADY 2702
H +G E A L +V G D ++ C R R A F Y
Sbjct: 660 HLVGKEKMCAAGLVKTV-------GNDFLCLEKQIGDLPLACIGKR-RAAYFCLDFPMVY 711
Query: 2703 GHNGMMYP-FNAWVPSLNDILEICGM-GSDFNCALINFYEAGASLGFHKDNERVYNDDPI 2876
H+ + YP F A P I+ G DFN AL+ YE G SL H+D+E Y+DD I
Sbjct: 712 FHDKVSYPTFEATGPIRQAIINAKDKWGIDFNSALVQVYEDGCSLPLHRDDEECYDDDGI 771
Query: 2877 LTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV-ICETSRVSITFRKHV 3053
LT+ + G+A F D+ + G LMP GFQK+++H+V + RVS+T R H
Sbjct: 772 LTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQVMSEGRVSVTVRVHK 829
Query: 3054 RRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIE 3233
R VR K R CL +++A+ I +S EE+++ + R +S G SI+
Sbjct: 830 RDFSFES-KVRFVKGRLDCLFSSVAEVIHKSPEEVMAFVP----HILDRCISN-RGCSID 883
Query: 3234 DCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMAN 3410
D + EA I +E D G NHF A++ ++ ++ +AN
Sbjct: 884 DARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHFRV----ASVRRSSINSLAN 939
Query: 3411 KGNLSVTKGLKE-------ELASKVFSGYNELQFIAQFESARILTNSFLNLTTGISLSRS 3569
G+ + E +V N ++ E A L S ++ TGI S
Sbjct: 940 SSKEIKANGVLDHVMLHFHERLKEVEPDLNSVEVKVNLERAGKLLKSLMDGMTGIVSHNS 999
Query: 3570 LDNG----EGYFNHILRQDHMKDIGFD---------------------VIAICGFAGSGK 3674
G +G + ++ MK I D V I GFAGSGK
Sbjct: 1000 THEGWRMIKGINSTSEMRNFMKMIKGDTSDEKSEMLEKVQGLNFFKKKVYGIFGFAGSGK 1059
Query: 3675 SRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKSEKSKLD 3848
S +Q ++ +++ +V PR LA DW+ K E R + TFE +KS+
Sbjct: 1060 SHAIQNLIYSEFKNSQGVLIVCPRKFLAKDWNEKGVNE----RDIKTFESALKSDTKGKR 1115
Query: 3849 LIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNKLDESVLTFEHDVD 4022
L ++DE++L P G+ DLL+ +L V + +V + DPLQA Y D+ L E ++
Sbjct: 1116 LFILDEVSLLPKGFTDLLMLKLHMDGVLKTSTIVCIGDPLQAGYFCPKDDGYLAKEGEIT 1175
Query: 4023 RLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADDRNEH 4202
RL +RY + +YR++ F + + +ND Q + + D+ S + H
Sbjct: 1176 RLFKE-GIRYKWYSYRINKFVAKKLGIETMNDFTGIDQQSL-IYKDMPSAHHFMKEGKNH 1233
Query: 4203 CDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALTRARK 4382
+V+LV S +EK+ +S+ VMTFGESQGLTF+ I+LSE + ++ +VA+TR +
Sbjct: 1234 PEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGIIVLSEEAKLCSDAHIMVAITRFGR 1293
Query: 4383 RISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLI---RDVKKNGCHD 4553
G +++ K GL+ + G + E LI +D+ K D
Sbjct: 1294 GFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASREFILSSSSVELILSEKDIAKGAGLD 1353
Query: 4554 EVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLCYNFDF 4733
E+DRE RL GD +LK I+LG+R + + + + H+ + L +
Sbjct: 1354 EMDRETRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTDSAIKCHIPMCSHQI-LMPELEK 1412
Query: 4734 IREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTFWMAVK 4913
I+ +E RE++ +NQF + + K + F+A+YP+H DDD+TF A+K
Sbjct: 1413 IQAREYREFKGKNGWSNQFREEASSNW-KFPYRVNQAMGFEAVYPRHRMDDDLTFLAAIK 1471
Query: 4914 KRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKKLEKSC 5093
KRL F NY + + A G L + F K + ++ DQ L ++ FE KL KS
Sbjct: 1472 KRLRFDSIANNYAKFKAAESRGKYLAKIFLKHVPINCGRDQRLLDQCRQEFEETKLSKSA 1531
Query: 5094 GTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCR 5273
TI H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF H ILV+F+PWCR
Sbjct: 1532 ATIGVHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKILVEFSPWCR 1591
Query: 5274 YLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYILSFELH 5453
Y E + LP+ YIH KNF +L+ + K+F CVESDY AFD SQD IL+FE+
Sbjct: 1592 YTEKVLTANLPDNYYIHQRKNFCELEDFAKRFSNGSTCVESDYTAFDVSQDHTILAFEVE 1651
Query: 5454 LMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRS 5633
L+K + ++ +Y +KC LGC+LG F+IMRFTGEF TFLFNTLANM FT CRYE
Sbjct: 1652 LLKHFGWDDSILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPD 1711
Query: 5634 GQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIVKEPEL 5813
G PI FAGDDMCAL NL + + +SLKAKV RT+ PMFCGWRL G++KEP L
Sbjct: 1712 GTPICFAGDDMCALRNLREIDTHEFILNKLSLKAKVNRTKVPMFCGWRLCCDGLIKEPCL 1771
Query: 5814 VYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFIVTHID 5993
+Y R QVAIE G++++ +++Y +E S+AY+L ERLY L+ E Q+ YHQ + RF + +
Sbjct: 1772 IYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNYHQVLTRFFIRNKH 1830
Query: 5994 KLKTKVRDLF--IEQSSDED 6047
L+ R +E SDED
Sbjct: 1831 LLRGDSRHNISELEWLSDED 1850
Score = 180 bits (456), Expect = 1e-41
Identities = 128/408 (31%), Positives = 204/408 (50%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + + + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPEKTREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P YV HSHP K ENHLLF+V+ ++ + C SIK +K+ + R S++
Sbjct: 64 PFSYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKME-----RLGSNS- 117
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
V T +NRLV+SKD +RY L+ P+ K IF
Sbjct: 118 -------VRTYDILNRLVTSKDKARYGP-------LATPERS--------PCPKKTNIFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+WS+ Q+ SFL R K T+V+PPEI + +S P +Y F++H L + P
Sbjct: 156 HDEIHYWSRAQLESFLAVHRPKNLWATLVFPPEIFAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHF-----KSG-DSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L S+S K+G + + V+ S+ +HHLF I DL+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLIYSLGSHHLFHIFPTEDLLK 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S+ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
+ D+ I+ ++F R+ + G + SF E + D K+P
Sbjct: 334 LSDADISIESVFMVQEFASRI--ERNGVGSWSCSFWECMKDWFFDKLP 379
>gb|ABY71563.1| polymerase [Apple chlorotic leaf spot virus]
Length = 1880
Score = 642 bits (1657), Expect = 0.0
Identities = 440/1228 (35%), Positives = 635/1228 (51%), Gaps = 62/1228 (5%)
Frame = +3
Query: 2550 AVSLFPSVLLKDCPAGFDQRL----TSFKMEPADFNCFKFRGREAA-FLTRVDADYGHNG 2714
A+ P +K C +G +R+ + K D + +GR AA F Y H+
Sbjct: 658 AILSCPLNCIKMCESGLIKRVGGSFEALKNYIGDLPLEQIKGRRAAYFCLDYPMIYFHDK 717
Query: 2715 MMYPFNAWVPSLNDIL--EICGMGSDFNCALINFYEAGASLGFHKDNERVYNDDPILTVA 2888
+ Y L ++ G +FN AL+ YEAG L HKD+E Y+DD +LT+
Sbjct: 718 ISYKTFEATGELKRVMIKARSDWGINFNSALVQIYEAGTKLPLHKDDEECYDDDGVLTIN 777
Query: 2889 LKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV-ICETSRVSITFRKHVRRMD 3065
+ GEA F D+ + G LMP G+QKK RH+V + R+S+T R H R +
Sbjct: 778 VVGEASFSTTCHDEITLLK--EGNELLMPSGYQKKFRHAVKVLSEGRISVTLRVHKRDFN 835
Query: 3066 GTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGSIEDCQM 3245
V+ K R CL IA+ I + EE++S L R +S G SI+D +
Sbjct: 836 FES-KVKFIKGRYDCLFECIAEIIHKKPEEVMSLLPHV----LDRCVSN-KGCSIDDLKA 889
Query: 3246 AAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHMAN-KGN 3419
+ I IE D G NHF A+I ++ + +AN K
Sbjct: 890 ICDKYEIKIECEGDCGLVECGSQGLSIGRMNLRGNHFRV----ASIRRSSIVSLANSKKE 945
Query: 3420 LSVTKGLKEELAS------KVFSGYNELQFIAQFESARILTNSFLNLTTGISLSRSLDNG 3581
+ T L + + +V + + A L S ++ TGI S G
Sbjct: 946 IKSTGSLDHVMINFKKRLLQVETDITKASIKVDLIRAGKLLKSLMDGMTGIVSHNSTHEG 1005
Query: 3582 EGYFNHI------------LRQDHMKDIGF-------------DVIAICGFAGSGKSRVL 3686
N I +++D K+ F ++ I GFAGSGKS +
Sbjct: 1006 WRIINGINSTAEMRAFMKMIKKDDDKESNFLSDRVGELEFERKEISGIFGFAGSGKSHAI 1065
Query: 3687 QGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKSEKSKLDLIVI 3860
Q ++ + + V+ PR LA DWS K E + + TFE +KS+ L ++
Sbjct: 1066 QNLIYNEFKGSQGIMVICPRRFLAKDWSEKGVDE----KDIKTFESALKSDIKGKRLFIL 1121
Query: 3861 DELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNKLDESVLTFEHDVDRLIS 4034
DE+TL P G++DLL+ ++ V R+ VV L DPLQA Y ++ D+S L ++++ RL
Sbjct: 1122 DEVTLLPRGFVDLLLLKMHMEGVFRNSTVVCLGDPLQAGYFSQRDDSYLARDNEIKRLFP 1181
Query: 4035 GVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQADDRNEHCDVL 4214
+ Y + +YR++ F + +VP LN E ++ + D+ S D H +V+
Sbjct: 1182 N-GVNYKWYSYRINKFIGKKINVPSLN-EFIGIDEQSAIYKDMPSAFHFLDKGGNHPEVI 1239
Query: 4215 LVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVALTRARKRISL 4394
LV S +EK+ +S+ VMTFGESQGLTF + I+LSE + ++ +VA+TR R+
Sbjct: 1240 LVASMIEKELYSNYGMVMTFGESQGLTFGNGIIVLSEEAKLCSDAHIMVAITRFRRGFCF 1299
Query: 4395 CCTFLGGLDEFKVKKKGGLILSLLEG--EVMTFELFNRMVKCNLIRDVKKNGCH-DEVDR 4565
G +++ K GL+ + G F L VK +L + ++G DE+DR
Sbjct: 1300 ALGSKGSKEDYMKSMKSGLLQRMCSGLGASQEFILNTSPVKLHLSKKAIESGAGIDEMDR 1359
Query: 4566 EERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFI-TEPNFGLCYNFDFIRE 4742
EERL GD +LK I+LG+R + + + H+ + +E G + +
Sbjct: 1360 EERLQGDVWLKSMIYLGKRFHLVEPLGQVVSLVDSAIKCHIPVCSEQTLGP--ELEKVWA 1417
Query: 4743 KEQREYREDMLATNQFCDSYEKTYIKGKRETVGP-----------LRFKAIYPKHSADDD 4889
+E RE++ + QF RE GP + +AIYP+H DDD
Sbjct: 1418 REHREFKGKNGWSCQF------------REEAGPKWMVPYKINQAMSHEAIYPRHRMDDD 1465
Query: 4890 MTFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFE 5069
+TF A+KKRL F N + + A G L + F K + + DQ L + FE
Sbjct: 1466 LTFLAAIKKRLRFDSVANNMAKFKAAESRGKYLAKIFLKHVPIKSGRDQRLLDACRQEFE 1525
Query: 5070 RKKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 5249
KL KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF H IL
Sbjct: 1526 ETKLSKSAATIGAHSQRSDTDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHRIL 1585
Query: 5250 VQFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDE 5429
V+F+PWCRY E + LP+ YIH KNF +L+++ K++ +CVESDY AFD SQD
Sbjct: 1586 VEFSPWCRYTEKILSANLPDNFYIHQRKNFSELETFAKRYSNGSVCVESDYTAFDVSQDH 1645
Query: 5430 YILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT 5609
IL+FE+ L++ + + ++ +Y +KC LGC+LG F+IMRFTGEF TFLFNTLANM FT
Sbjct: 1646 TILAFEVELLRHFGWDEKILQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFT 1705
Query: 5610 LCRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPY 5789
CRY G PI FAGDDMCAL NL D + + +SLKAKV RT+ PMFCGWRL
Sbjct: 1706 FCRYRVPDGTPICFAGDDMCALRNLKETEDHELILNKLSLKAKVNRTKVPMFCGWRLCSD 1765
Query: 5790 GIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVV 5969
G++KEP L+Y R QVAIE ++++ +++Y +E S+AY+L ERLY L+ E Q+ YHQ +
Sbjct: 1766 GLIKEPCLIYERLQVAIENNRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNYHQVLT 1824
Query: 5970 RFIVTHIDKLKTKVRDLF--IEQSSDED 6047
RF V + L+ R+ +E SDED
Sbjct: 1825 RFFVKNKHLLRGDSRNSISELEWLSDED 1852
Score = 175 bits (444), Expect = 3e-40
Identities = 124/409 (30%), Positives = 203/409 (49%), Gaps = 10/409 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + + + + + + +F+Y L ++ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQSQQEILGKFQFERIEKEEEKKVANFSYFLPEKTREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P Y HSHP K ENHLLF+V+ ++ + C SIK +K+ + G
Sbjct: 64 PFAYETHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKMER---------LG 114
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEA-IF 602
+SV T +NRLV++KD +RY G L S +++ K+ IF
Sbjct: 115 ASSV----KTYDILNRLVTAKDKARY--------------GPLVSE--VRAPCPKKTNIF 154
Query: 603 FHDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFF 782
HDE+H+WS+KQ+ +FL + K T+V+PPEIL + +S P +Y F++ L +
Sbjct: 155 IHDEIHYWSRKQLENFLMINKPKNLWATLVFPPEILAGYRSSVLPFLYQFEISGKDLIYM 214
Query: 783 PDGVRTEAYEQQLNLHWLFSAS------HFKSGDSTWTVTRHKSIYAHHLFEI-TAGDLI 941
PDGVR+E+Y Q L +L S++ H K + + ++ S+ +HHLF I DL+
Sbjct: 215 PDGVRSESYTQPLENGYLLSSNSIIIFDHCKKKEIRYQISLIYSLGSHHLFHIFPCQDLM 274
Query: 942 TDSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLR 1118
+ F Y+ D+ +F+ R FP+S+ K++ YL LKKPD +S +AKLR
Sbjct: 275 KEEVRRFGPYDLFDVGSLFVRPVRVPIQDFPLSV--FKKIFIYLSSLKKPDEQSAVAKLR 332
Query: 1119 QIIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
Q+ D+ I+ ++F R+ K G + SF + + D K+P
Sbjct: 333 QLSDADISIESVFLVQEFASRIEKH--GLGNWSCSFWDCMKDWFFDKLP 379
>ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus]
gi|137259|sp|P27738.1|RDRP_ACLSP RecName:
Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
protein; AltName: Full=ORF1 protein; AltName: Full=RNA
replicase gi|210294|gb|AAA42587.1| putative [Apple
chlorotic leaf spot virus]
Length = 1884
Score = 641 bits (1654), Expect = e-180
Identities = 431/1225 (35%), Positives = 636/1225 (51%), Gaps = 49/1225 (4%)
Frame = +3
Query: 2520 DHFLGMETFSAVSLFPSVLLKDCPAGFDQRLTSFKMEPADFNCFKFRGREAA-FLTRVDA 2696
D F+G E + L +V G D L + ++E + + RG++AA F
Sbjct: 665 DDFVGREKLCSAGLIKTV-------GNDYLLLARQIECMPLS--QLRGKKAAYFCLDFPM 715
Query: 2697 DYGHNGMMYPFNAWVPSLNDILEICGM--GSDFNCALINFYEAGASLGFHKDNERVYNDD 2870
Y H+ + YP + ++ G DFN ALI Y G L H DNE Y+DD
Sbjct: 716 VYFHDKVSYPTFEATGEIRHVMMKARSKWGIDFNSALIQVYNDGCRLPLHSDNEECYDDD 775
Query: 2871 PILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV-ICETSRVSITFRK 3047
ILT+ + G+A F D+ + G LMP G+QKK+RH+V + R S+T R
Sbjct: 776 GILTINVVGDAKFHTTCHDEV--IDLKQGNEILMPAGYQKKNRHAVEVASEGRTSVTLRV 833
Query: 3048 HVRRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEGNGGS 3227
H R +R K + CL ++A+ I + EEI+ + R +S G S
Sbjct: 834 HKRDFSFES-KLRFIKGKFDCLFVSVAEIIHKKPEEIMMFIP----HIMDRCVSN-RGCS 887
Query: 3228 IEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTFVSHM 3404
++D + E I IE D G NHFS A++ ++ + +
Sbjct: 888 LDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGNHFSV----ASVRRSSMDSL 943
Query: 3405 ANKGNLSVTKGLKEELASKVFSGYNELQFIA--------QFESARI--LTNSFLNLTTGI 3554
AN + G+ + + F+ + L+ + + +S+R L S ++ TGI
Sbjct: 944 ANSSKEIKSDGVLDHVT---FNFHKRLKLVEPDLTNADIKVDSSRAGKLLKSLMDGMTGI 1000
Query: 3555 SLSRSLDNG-------------EGYFNHILRQ---------DHMKDIGF---DVIAICGF 3659
S G + N + Q D ++++ F + I GF
Sbjct: 1001 VSHNSTHEGWRMIKGINSTSEMRSFMNMVRGQIEEPKSDLFDKVQELNFMKVKIYGIFGF 1060
Query: 3660 AGSGKSRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKSE 3833
AGSGKS +Q + + + V+ PR LA DWS K E + + TFE +KS+
Sbjct: 1061 AGSGKSHAIQNLIQTEFKGSQGIMVICPRRFLAKDWSEKGVDE----KDIKTFESALKSD 1116
Query: 3834 KSKLDLIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNKLDESVLTF 4007
L ++DE++L P G+ DLL+ ++ + + +V + DPLQA Y D++ L+
Sbjct: 1117 VKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDPLQAGYFCPKDDNYLSR 1176
Query: 4008 EHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQAD 4187
E ++ RL G + Y + +YR++ F + + +ND Q + D+ S +
Sbjct: 1177 EGEIKRLFKG-GVNYKWYSYRINKFIAKKLAIETMNDFIGIDEQSS-IYKDMPSAHHFME 1234
Query: 4188 DRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVAL 4367
+ H +V+LV S +EK+ +S+ VMTFGESQGLTF+ I+LSE + ++ +VA+
Sbjct: 1235 KKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCSDAHIMVAI 1294
Query: 4368 TRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLI---RDVKK 4538
TR R+ G +++ K GL+ + G + E NLI +D+ K
Sbjct: 1295 TRFRRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASKEFILGSSSVNLILSEKDIAK 1354
Query: 4539 NGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGLC 4718
DE+DRE RL GD +LK I+LG+R + + + + H+ + L
Sbjct: 1355 GAGIDEMDREARLEGDVWLKSMIYLGKRYHMVEPLGQVIKLTDDAIKCHIPVCSSQT-LG 1413
Query: 4719 YNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMTF 4898
D I+ +E RE++ +NQF + + K + + ++A+YP+H DDD+TF
Sbjct: 1414 PELDNIQAREYREFKGKNGWSNQFREEAGPNW-KFPYKVNQAMSYEAVYPRHKMDDDLTF 1472
Query: 4899 WMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERKK 5078
A+KKRL F NY + + A G L + F K + + DQ L ++ FE K
Sbjct: 1473 LAAIKKRLRFDNVANNYAKFKAAESRGKYLTKIFLKHVPIKCGRDQRLLDQCRQEFEETK 1532
Query: 5079 LEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 5258
L KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF H ILV+F
Sbjct: 1533 LSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACFPHKILVEF 1592
Query: 5259 APWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYIL 5438
+PWCRY E + LP+ YIH KNF +L+ + ++F ICVESDY AFD SQD IL
Sbjct: 1593 SPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFARRFSNGSICVESDYTAFDVSQDHTIL 1652
Query: 5439 SFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCR 5618
+FE+ L++ + V+ +Y +KC LGC+LG F+IMRFTGEF TFLFNTLANM FT CR
Sbjct: 1653 AFEVELLRHFGWDDRVLQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCR 1712
Query: 5619 YEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGIV 5798
YE G PI FAGDDMCAL NL + + +SLKAKV RT+ PMFCGWRL G++
Sbjct: 1713 YEVPDGTPICFAGDDMCALRNLREIDTHEFILSKLSLKAKVNRTKVPMFCGWRLCCDGLI 1772
Query: 5799 KEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRFI 5978
KEP L+Y R QVAIE G++++ +++Y +E S+AY+L ERLY L+ E Q+ YHQ + RF
Sbjct: 1773 KEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNYHQVLTRFF 1831
Query: 5979 VTHIDKLKTKVRDLF--IEQSSDED 6047
+ + L+ R +E SDED
Sbjct: 1832 IRNKHLLRGDSRHNISELEWLSDED 1856
Score = 179 bits (453), Expect = 3e-41
Identities = 125/405 (30%), Positives = 199/405 (49%), Gaps = 15/405 (3%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + + + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGFQYERIQKEEEKKVENFSFYLPEKTREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P YV HSHP K ENHLLF+V+ ++ + C SIK +K+ + G
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSNKMSKMER---------LG 114
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
P SV T +NRLV++KD +RY L+ P+ K IF
Sbjct: 115 PNSV----KTYDILNRLVTAKDKARYGP-------LAKPERS--------PCPKKTNIFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+WS+ Q+ +FL+ R K T+V+PPEIL + +S P +Y F++H L + P
Sbjct: 156 HDEIHYWSRDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSAS------HFKSGDSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L S+S + + V+ S+ +HHLF I A DL+
Sbjct: 216 DGVRSESYTQPLENGFLLSSSSIIIKNRVTGVEIRYQVSLVYSLGSHHLFHIYPAEDLMK 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S+ K++ Y+ LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTS------WGLFGYSFMEKL 1238
+ D+ I+ ++F R+ K WG F +KL
Sbjct: 334 LSDADISIESVFMIQEFASRIEKNGVESWSCSFWGCMKDWFFDKL 378
>gb|AGW07336.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1878
Score = 640 bits (1652), Expect = e-180
Identities = 422/1173 (35%), Positives = 613/1173 (52%), Gaps = 45/1173 (3%)
Frame = +3
Query: 2664 REAAFLTRVDADYGHNGMMYPFNAWVPSLNDILEICG--MGSDFNCALINFYEAGASLGF 2837
R A F Y H+ + YP S+ + G DFN AL+ YE G SL
Sbjct: 699 RAAYFCLDFPMVYFHDKVSYPTFEATGSIKQAIISARDKWGIDFNSALVQVYEDGCSLPL 758
Query: 2838 HKDNERVYNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV-IC 3014
H+D+E Y+DD ILT+ + G+A F D+ + G LMP GFQK+++H+V +
Sbjct: 759 HRDDEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQVM 816
Query: 3015 ETSRVSITFRKHVRRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFW 3194
R S+T R H R V+ K R CL +A+A+ I + EE+++ +
Sbjct: 817 SEGRTSVTIRVHKRDFSFES-KVKFVKGRLDCLFSAVAEVIHKKPEEVMAFVP----HIL 871
Query: 3195 GRFLSEGNGGSIEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAG 3371
R +S G SI+D + EA I +E D G NHF
Sbjct: 872 DRCISN-KGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHFRV---- 926
Query: 3372 ANIPKTFVSHMANKGNLSVTKGLKE-------ELASKVFSGYNELQFIAQFESARILTNS 3530
A++ ++ + +AN G+ + E +V N ++ E A L S
Sbjct: 927 ASVRRSSIDSLANSSKEVKANGVLDHVMFNFHERLEEVEPDLNSVEIKVNLERAGKLLKS 986
Query: 3531 FLNLTTGISLSRSLDNG----EGYFNHILRQDHMKDIGFDV------------------- 3641
++ TGI S G +G + ++ MK I DV
Sbjct: 987 LMDGMTGIVSHNSTHEGWRMIKGINSTSEMRNFMKMIKGDVSDEKCEMLEKVQELNFFKR 1046
Query: 3642 --IAICGFAGSGKSRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMT 3809
I GFAGSGKS +Q ++ +++ VV PR LA DWS K + + + T
Sbjct: 1047 KIYGIFGFAGSGKSHAIQNLIYSEFKNSQGVLVVCPRKFLAKDWSEKGVND----KDIKT 1102
Query: 3810 FEKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNK 3983
FE +KS+ L ++DE++L P G+ DLL+ +L V + +V + DPLQA Y
Sbjct: 1103 FESALKSDIRGKRLFILDEVSLLPRGFTDLLMLKLHMDGVLKTSTIVCIGDPLQAGYFCP 1162
Query: 3984 LDESVLTFEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDV 4163
D+ L + ++ R +RY + +YR++ F + + +ND Q + + D+
Sbjct: 1163 KDDGYLAKDGEIMRFFKE-GIRYKWYSYRINKFMAKKLSISTMNDFTGIDQQSL-VYKDM 1220
Query: 4164 YSISSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSN 4343
S + N H +V+LV S +EK+ +S+ VMTFGESQGLTF+ I+LSE + +
Sbjct: 1221 PSAHHFMKEGNNHPEVILVASTIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCS 1280
Query: 4344 EYRWVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLI 4523
+ +VA+TR R+ G +++ K GL+ + G + E LI
Sbjct: 1281 DAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASREFILSSSSVKLI 1340
Query: 4524 ---RDVKKNGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFI 4694
+D+ K DE+DRE RL GD +LK I+LG+R + + + + H+ +
Sbjct: 1341 LSEKDIAKGAGLDEMDREARLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTDGAIKCHIPV 1400
Query: 4695 TEPNFGLCYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKH 4874
P L + I+ +E RE++ +NQF + + K + + F+A+YP+H
Sbjct: 1401 CSPQT-LMPELEKIQAREYREFKGRNGWSNQFREEAGPNW-KFPYKVNQAMSFEAVYPRH 1458
Query: 4875 SADDDMTFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEES 5054
DDD+TF A+KKRL F NY + + A G L + F K + + DQ L ++
Sbjct: 1459 RMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKIFLKHVPIKCGRDQRLLDQC 1518
Query: 5055 VNAFERKKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACF 5234
FE KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF
Sbjct: 1519 RQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACF 1578
Query: 5235 QHLILVQFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFD 5414
H ILV+F+PWCRY E + LP+ YIH KNF +L+ + K+F CVESDY AFD
Sbjct: 1579 PHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFAKRFSNGSTCVESDYTAFD 1638
Query: 5415 ASQDEYILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLA 5594
SQD IL+FE+ L++ + ++ +Y +KC LGC+LG F+IMRFTGEF TFLFNTLA
Sbjct: 1639 VSQDHTILAFEVELLRHFGWDDSILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNTLA 1698
Query: 5595 NMAFTLCRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGW 5774
NM FT CRYE G PI FAGDDMCAL NL + + + +SLKAKV RT+ PMFCGW
Sbjct: 1699 NMVFTFCRYEVPDGTPICFAGDDMCALRNLREINTHELILNKLSLKAKVNRTKVPMFCGW 1758
Query: 5775 RLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQY 5954
RL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY+L ERLY L+ E Q+ Y
Sbjct: 1759 RLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNY 1817
Query: 5955 HQAVVRFIVTHIDKLKTKVRDLF--IEQSSDED 6047
HQ + RF + + L+ R +E SDED
Sbjct: 1818 HQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1850
Score = 182 bits (461), Expect = 3e-42
Identities = 129/408 (31%), Positives = 205/408 (50%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + + + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPERTREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P YV HSHP K ENHLLF+V+ ++ + C SIK +K+ + R S++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKME-----RLGSNS- 117
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
V T +NRLV+SKD +RY L+ P+ K IF
Sbjct: 118 -------VRTYDILNRLVTSKDKARYGP-------LATPERS--------PCPKKTNIFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+WS+ Q+ SFL R K T+V+PPEIL + +S P +Y F++H L + P
Sbjct: 156 HDEIHYWSRAQLESFLAVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHDKDLVYMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHF-----KSG-DSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L S+S K+G + + V+ S+ +HHLF I DL+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLVYSLGSHHLFHIYPTEDLLK 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S+ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
+ D+ I+ ++F R+ + G + SF E + D K+P
Sbjct: 334 LSDADISIESVFLIQEFASRI--ERNGVGNWSCSFWECMKDWFFDKLP 379
>gb|AGK63259.1| replicase [Cherry mottle leaf virus]
Length = 1887
Score = 640 bits (1651), Expect = e-180
Identities = 431/1154 (37%), Positives = 614/1154 (53%), Gaps = 48/1154 (4%)
Frame = +3
Query: 2700 YGHNGMMYP-------FNAWVPSLNDILEICGMGSDFNCALINFYEAGASLGFHKDNERV 2858
Y HN + YP W+ D G FN AL+ YE G LG HKDNE
Sbjct: 718 YFHNSISYPSMEASGLIKEWILKKAD-----DYGVPFNAALVQVYEKGCILGMHKDNESC 772
Query: 2859 YNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSVICETS-RVSI 3035
Y + PILTV + GEA F + ++ ++ +G LMP+ FQ+K RH V ++ R+S+
Sbjct: 773 YGNHPILTVNVSGEATFSTDCCGNT--IELKSGDELLMPENFQRKFRHGVRSDSDGRMSV 830
Query: 3036 TFRKHVRRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFWGRFLSEG 3215
T R H R DK + CL AIA+ I + EE++ LR N R +
Sbjct: 831 TLRVHERDFSFEEKRKFVDKKYD-CLFIAIAEMISKKPEEVM--LRCLNTL--DRCIMN- 884
Query: 3216 NGGSIEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAGANIPKTF 3392
G + D + I +E D G V NHFS S + +
Sbjct: 885 KGCDLTDLRSICNGYEIKVECQGDCGLIEVGDTGLPLGKLLLRGNHFSLCSKRRSNLDSL 944
Query: 3393 VSHMANKGNLS---------VTKGLK--------EELASKVFSGYNELQFIAQFESARIL 3521
+ M +L+ K LK E + G L+ + + + +
Sbjct: 945 ANSMKEVSSLAGGLDYVMFNFIKRLKLIEPDISISETKVDIKRGGKLLKCLMEGLTGIVS 1004
Query: 3522 TNSFLN---LTTGISLS---RSL-----DNGEGYFNHILRQDHMKDIGFD---VIAICGF 3659
NS + L G+ S RSL N +G + L + ++++ F + I GF
Sbjct: 1005 HNSTHDGWRLLKGVKNSSDMRSLIGAMRGNVDGIEKNKLLSE-LEELNFQKVPIYGIFGF 1063
Query: 3660 AGSGKSRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMTFEKFIKSE 3833
AGSGKS +Q + R + VV PR LA DWS K E + + TFE +KS+
Sbjct: 1064 AGSGKSHTIQNLISKEFRGSQGLMVVCPRKFLAKDWSEKGVEEMD----IRTFESALKSD 1119
Query: 3834 KSKLDLIVIDELTLFPNGYLDLLIFEL-MQVN-RHCLVVLLFDPLQARYHNKLDESVLTF 4007
+ ++DE+TL P G+ DLL+ ++ M+ N ++ ++ L DPLQA Y ++ D+S L
Sbjct: 1120 IKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKNSTIICLGDPLQASYFSQKDDSYLER 1179
Query: 4008 EHDVDRLI-SGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDVYSISSQA 4184
E +V RL GV+ Y + ++R++ F + + N Q + DV S
Sbjct: 1180 EAEVKRLFPEGVE--YKWFSHRINKFVAKQLSIQTTNPFAGIDGQS-QIYGDVQSAICSI 1236
Query: 4185 DDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSNEYRWVVA 4364
+++LV S +EK+ ++++ + +TFGESQGLTF I+LSE + ++ +VA
Sbjct: 1237 RKTGVEVEIILVASMIEKELYNNLGRTITFGESQGLTFGVGVIVLSEETKLCSDAHIMVA 1296
Query: 4365 LTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLE--GEVMTFELFNRMVKCNLIRDVKK 4538
+TR K S G DE+ K GL+ L G F L + VK NL + K
Sbjct: 1297 ITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFILSSSSVKLNLSEKLIK 1356
Query: 4539 NGCH-DEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFITEPNFGL 4715
G DE+DREERLSGDP+LK I+LG+R + C ++ + HL I L
Sbjct: 1357 KGAGIDEMDREERLSGDPWLKTQIYLGKRFHLREPLGQVCNLEDSAIKCHLPICNSQT-L 1415
Query: 4716 CYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKHSADDDMT 4895
++ +E RE++ + QF + + + P+ F+AIYP+H DDD+T
Sbjct: 1416 YVELSNMKAREDREFKGKDGWSKQFREEAGPNW-SSPYKIAQPMNFEAIYPRHRMDDDIT 1474
Query: 4896 FWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEESVNAFERK 5075
F+ A+KKRL F NY + +++ G L + F + + L +Q L + FE
Sbjct: 1475 FYAAIKKRLRFDNVASNYVKFKQSQSRGQYLLKVFLEHIELRPSRNQALLNQCRQEFEET 1534
Query: 5076 KLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQ 5255
KL KS TI +HS RSD DW L+ +FLFMKSQLCTK+EK+F DAKAGQTLACFQH ILV+
Sbjct: 1535 KLNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRFEDAKAGQTLACFQHRILVE 1594
Query: 5256 FAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFDASQDEYI 5435
F+PWCRY+E + +PE YIH KNF +L+S+ K+F CVESDY AFD SQD I
Sbjct: 1595 FSPWCRYVEKILSACMPENFYIHQRKNFSELESFAKRFSDGSTCVESDYTAFDVSQDHTI 1654
Query: 5436 LSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLC 5615
L+FE+ L++ + + ++++Y +KC LGCKLG F+IMRFTGEF TFLFNTLANMAFT C
Sbjct: 1655 LAFEVELLRYVGWDESILNSYIKMKCTLGCKLGGFAIMRFTGEFSTFLFNTLANMAFTFC 1714
Query: 5616 RYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGWRLTPYGI 5795
RYE + G PI FAGDDMCAL NL + + E +SLKAKV RT PMFCGWRL G+
Sbjct: 1715 RYEVKKGTPICFAGDDMCALRNLREMSKHEHILEKLSLKAKVNRTTVPMFCGWRLCQDGL 1774
Query: 5796 VKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQYHQAVVRF 5975
+KEP L+Y R VAIE G++L+ +++Y +E S+AY+L ERL++ L+ Q+ YHQ + RF
Sbjct: 1775 IKEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERLFQYLEI-GQLNYHQVLARF 1833
Query: 5976 IVTHIDKLKTKVRD 6017
V + L+ R+
Sbjct: 1834 SVKNSHLLRGSARE 1847
Score = 175 bits (443), Expect = 4e-40
Identities = 128/406 (31%), Positives = 202/406 (49%), Gaps = 9/406 (2%)
Frame = +3
Query: 75 KTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELYPN 254
+T E +L + + I + + L + R F+YAL K+ +K G+ L P
Sbjct: 6 RTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPEKTKEWFTKSGVYLSPF 65
Query: 255 GYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTGPA 431
+ HSHP K ENH+L++V+ ++ + C SIK +K+ + R +H+
Sbjct: 66 SFEVHSHPGCKTLENHILYNVVAPNISKYPYVACLSIKANKMSKME-----RMGAHS--- 117
Query: 432 SVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFFHD 611
V NRLV+S+D SRY + + PKG SN FI HD
Sbjct: 118 -----VRNYDIFNRLVTSRDKSRYGDLTQPS-RIGGPKG---SNYFI-----------HD 157
Query: 612 EVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFPDG 791
E+H+WS+ Q+ +FL + + T+V+PPEILK + +S P +Y+F++ KG L + PDG
Sbjct: 158 EIHYWSRPQLETFLDLKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDG 217
Query: 792 VRTEAYEQQLNLHWLFSAS--HFKSGDST---WTVTRHKSIYAHHLFEITAG-DLITDSK 953
R+E+Y Q + +L S + FK+ D ++V+ ++ +HH+F I LI D
Sbjct: 218 SRSESYTQSIENGYLLSTNCISFKNKDGVRKQYSVSLVYTLGSHHVFHIFPNLGLIEDEV 277
Query: 954 IFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIG 1130
F Y+ D+ +F R FP+S K++ Y+ LKKPD +S +AKLRQ+
Sbjct: 278 RRFGPYDLFDVGSLFKKPVRVPIQGFPLST--FKKIFIYMSSLKKPDEQSAVAKLRQLCD 335
Query: 1131 DDVEIKEFLFFEQFCKRLIKRQT-SWGLFGYSFMEKLTDVALSKMP 1265
++ I+ ++F KR+ K SW SF E L D K+P
Sbjct: 336 SEISIEAVFLIQEFAKRIEKGGVLSWSC---SFFEYLKDHFFDKIP 378
>gb|AGW07339.1| RNA polymerase [Apple chlorotic leaf spot virus]
Length = 1878
Score = 640 bits (1650), Expect = e-180
Identities = 422/1173 (35%), Positives = 613/1173 (52%), Gaps = 45/1173 (3%)
Frame = +3
Query: 2664 REAAFLTRVDADYGHNGMMYPFNAWVPSLNDILEICG--MGSDFNCALINFYEAGASLGF 2837
R A F Y H+ + YP S+ + G DFN AL+ YE G SL
Sbjct: 699 RAAYFCLDFPMVYFHDKVSYPTFEATGSIKQAIISARDKWGIDFNSALVQVYEDGCSLPL 758
Query: 2838 HKDNERVYNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRHSV-IC 3014
H+D+E Y+DD ILT+ + G+A F D+ + G LMP GFQK+++H+V +
Sbjct: 759 HRDDEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQVT 816
Query: 3015 ETSRVSITFRKHVRRMDGTPITVREDKYRNMCLINAIAKGIKRSSEEIISKLRATNGSFW 3194
R S+T R H R V+ K + CL +A+A+ I + EE+++ +
Sbjct: 817 SEGRTSVTIRVHKRDFSFES-KVKFVKGKLDCLFSAVAEVIHKKPEEVMAFVP----HIL 871
Query: 3195 GRFLSEGNGGSIEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDNHFSYVSAG 3371
R +S G SI+D + EA I +E D G NHF
Sbjct: 872 DRCISN-RGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHFRV---- 926
Query: 3372 ANIPKTFVSHMANKGNLSVTKGLKE-------ELASKVFSGYNELQFIAQFESARILTNS 3530
A++ ++ + +AN G+ + E +V N + E A L S
Sbjct: 927 ASVRRSSIDSLANSSKEVKANGVLDHVMFNFHERLKEVEPDLNSAEIKVNLERAGKLLKS 986
Query: 3531 FLNLTTGISLSRSLDNG----EGYFNHILRQDHMKDIGFDV------------------- 3641
++ TGI S G +G + ++ MK I DV
Sbjct: 987 LMDGMTGIVSHNSTHEGWRMIKGINSTSEMRNFMKMIKGDVPDEKCEMLEKVQELNFFKR 1046
Query: 3642 --IAICGFAGSGKSRVLQGWLHGRKRSN--FCVVSPRTNLANDWSYKLELEPNEWRKVMT 3809
I GFAGSGKS +Q ++ +++ VV PR LA DWS K + + + T
Sbjct: 1047 KIYGIFGFAGSGKSHAIQNLIYSEFKNSQGVLVVCPRKFLAKDWSEKGVND----KDIKT 1102
Query: 3810 FEKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFELMQ--VNRHCLVVLLFDPLQARYHNK 3983
FE +KS+ L ++DE++L P G+ DLL+ +L V + +V + DPLQA Y
Sbjct: 1103 FESALKSDIRGKRLFILDEVSLLPRGFTDLLMLKLHMDGVLKTSTIVCIGDPLQAGYFCP 1162
Query: 3984 LDESVLTFEHDVDRLISGVDLRYIYSTYRMSPFFNRFCDVPCLNDEPRDASQKIWFFDDV 4163
D+ L + ++ RL +RY + +YR++ F + + +ND Q + + D+
Sbjct: 1163 KDDGYLARDGEIMRLFKE-GIRYKWYSYRINKFMAKKLSISTMNDFTGIDQQSL-VYKDM 1220
Query: 4164 YSISSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGESQGLTFDHVCILLSESSASSN 4343
S + N H +V+LV S +EK+ +S+ VMTFGESQGLTF+ I+LSE + +
Sbjct: 1221 PSAHHFMKEGNNHPEVILVASTIEKELYSNYGNVMTFGESQGLTFNCGVIVLSEEAKLCS 1280
Query: 4344 EYRWVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSLLEGEVMTFELFNRMVKCNLI 4523
+ +VA+TR R+ G +++ K GL+ + G + E LI
Sbjct: 1281 DAHIMVAITRFRRGFCXALGSKGSKEDYMRSMKSGLLQRMCSGIGASREFILSSSSVKLI 1340
Query: 4524 ---RDVKKNGCHDEVDREERLSGDPFLKPFIFLGQRIAQENCVVDDCEPDEPRCQTHLFI 4694
+D+ K DE+DRE RL GD +LK I+LG+R + + + + H+ +
Sbjct: 1341 LSEKDIAKGAGLDEMDREARLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTDGAIKCHIPV 1400
Query: 4695 TEPNFGLCYNFDFIREKEQREYREDMLATNQFCDSYEKTYIKGKRETVGPLRFKAIYPKH 4874
P L + I+ +E RE++ +NQF + + K + + F+A+YP+H
Sbjct: 1401 CSPQT-LMPELEKIQAREYREFKGRNGWSNQFREEAGPNW-KFPYKVNQAMSFEAVYPRH 1458
Query: 4875 SADDDMTFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQNFKKKMGLSFQFDQGLFEES 5054
DDD+TF A+KKRL F NY + + A G L + F K + + DQ L ++
Sbjct: 1459 RMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKIFLKHVPIKCGRDQRLLDQC 1518
Query: 5055 VNAFERKKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQLCTKYEKQFVDAKAGQTLACF 5234
FE KL KS TI +H+ RSD DW L+ +FLFMKSQLCTK+EK+F +AKAGQTLACF
Sbjct: 1519 RQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLACF 1578
Query: 5235 QHLILVQFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDSWVKKFFQRDICVESDYEAFD 5414
H ILV+F+PWCRY E + LP+ YIH KNF +L+ + K+F CVESDY AFD
Sbjct: 1579 PHKILVEFSPWCRYTEKVLTASLPDNYYIHQRKNFCELEDFAKRFSNGSTCVESDYTAFD 1638
Query: 5415 ASQDEYILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLA 5594
SQD IL+FE+ L++ + ++ +Y +KC LGC+LG F+IMRFTGEF TFLFNTLA
Sbjct: 1639 VSQDHTILAFEVELLRHFGWDDSILQSYIRMKCTLGCRLGGFAIMRFTGEFSTFLFNTLA 1698
Query: 5595 NMAFTLCRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLFEAISLKAKVERTETPMFCGW 5774
NM FT CRYE G PI FAGDDMCAL NL + + + +SLKAKV RT+ PMFCGW
Sbjct: 1699 NMVFTFCRYEVPDGTPICFAGDDMCALRNLREINTHELILNKLSLKAKVNRTKVPMFCGW 1758
Query: 5775 RLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYRLSERLYEVLKSERQIQY 5954
RL G++KEP L+Y R QVAIE G++++ +++Y +E S+AY+L ERLY L+ E Q+ Y
Sbjct: 1759 RLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIE-QLNY 1817
Query: 5955 HQAVVRFIVTHIDKLKTKVRDLF--IEQSSDED 6047
HQ + RF + + L+ R +E SDED
Sbjct: 1818 HQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1850
Score = 182 bits (461), Expect = 3e-42
Identities = 129/408 (31%), Positives = 205/408 (50%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + + + ++F++ L ++ +K G+ L
Sbjct: 4 SYRTPQEELLSRLPQSQQEVISGYQYERIQKEEEKKVENFSFYLPERTREWFTKSGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P YV HSHP K ENHLLF+V+ ++ + C SIK +K+ + R S++
Sbjct: 64 PFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNKMSKME-----RLGSNS- 117
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
V T +NRLV+SKD +RY L+ P+ K IF
Sbjct: 118 -------VRTYDILNRLVTSKDKARYGP-------LATPERS--------PCPKKTNIFI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+WS+ Q+ SFL R K T+V+PPEIL + +S P +Y F++H L + P
Sbjct: 156 HDEIHYWSRTQLESFLAVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHDKDLVYMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHF-----KSG-DSTWTVTRHKSIYAHHLFEI-TAGDLIT 944
DGVR+E+Y Q L +L S+S K+G + + V+ S+ +HHLF I DL+
Sbjct: 216 DGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLVYSLGSHHLFHIYPTEDLLK 275
Query: 945 DSKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQ 1121
+ F Y+ D+ +F+ R FP+S+ K++ YL LKKPD++S +AKLRQ
Sbjct: 276 EEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVAKLRQ 333
Query: 1122 IIGDDVEIKEFLFFEQFCKRLIKRQTSWGLFGYSFMEKLTDVALSKMP 1265
+ D+ I+ ++F R+ + G + SF E + D K+P
Sbjct: 334 LSDADISIESVFMVQEFASRI--ERNGVGSWSCSFWECMKDWFFDKLP 379
>ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi|75266362|gb|ABA18636.1|
putative polyprotein [Peach mosaic virus]
Length = 1886
Score = 638 bits (1646), Expect = e-179
Identities = 429/1187 (36%), Positives = 621/1187 (52%), Gaps = 59/1187 (4%)
Frame = +3
Query: 2652 KFRGREAAFLTRVDAD-YGHNGMMYPFNAWVPSLNDILEICGMGSD--FNCALINFYEAG 2822
+ GR A ++ A Y HN + YP + D + D FN AL+ Y
Sbjct: 702 ELNGRRAMYVCLDSAMVYFHNTISYPSIEAHGKIKDWILRKAKDYDVPFNAALVQVYRKD 761
Query: 2823 ASLGFHKDNERVYNDDPILTVALKGEALFKIEYKDDSHQFQMTAGTYFLMPKGFQKKSRH 3002
++G HKDNE Y ++PILTV G A+F + ++ + G LMP FQ+K RH
Sbjct: 762 YTMGMHKDNEACYGEEPILTVNAFGSAVFSTDCCNNV--INLEDGDELLMPAKFQRKFRH 819
Query: 3003 SV-ICETSRVSITFRKHVRRMDGTPITVREDKYRNM---CLINAIAKGIKRSSEEIISKL 3170
V RVSIT R H R + K+ N CL +A++K I + SEE++ +
Sbjct: 820 GVKSLSEGRVSITLRVHSRDFSFE----EKRKFVNGKFDCLFDAVSKLISKKSEEVMIR- 874
Query: 3171 RATNGSFWGRFLSEGNGGSIEDCQMAAEALSITIELMVD-GKCLVXXXXXXXXXXXXXDN 3347
N R + G ++D + I +E D G V N
Sbjct: 875 ---NPHILDRCIMN-RGCDLDDLRSICNNYEIKVECQGDCGLLEVGSIGMPLGRFMLRGN 930
Query: 3348 HFSYVSAGANIPKTFVSHMANKGNL-SVTKGLKEELASKVFSGYNELQFIAQFESARILT 3524
HFS S + NL S+ +K+ S Y +++F+ + +
Sbjct: 931 HFSLCSK-------------RRSNLDSLANSVKDVSVSSCGIDYVQMKFLDRLRAIEPDL 977
Query: 3525 NSF---LNLTTGISLSRSLDNG-EGYFNHILRQD-------------------------- 3614
NS +++ G L + L G G +H D
Sbjct: 978 NSTKVKVDIRRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLVSAMRGSSA 1037
Query: 3615 ---------HMKDIGFDVIAI---CGFAGSGKSRVLQGWLHGRKRSN--FCVVSPRTNLA 3752
++++ F ++I GFAGSGKS +Q + R + VV PR LA
Sbjct: 1038 GIEKNKLMEELEELNFQQVSIHGIFGFAGSGKSHAIQDLISKEFRGSQGLMVVCPRKFLA 1097
Query: 3753 NDWSYKLELEPNEWRKVMTFEKFIKSEKSKLDLIVIDELTLFPNGYLDLLIFEL-MQVN- 3926
DWS K + + + TFE +KS+ + ++DE+TL P G+ DLL+ ++ M+ N
Sbjct: 1098 KDWSEK----GVDDQDIKTFESALKSDLKGKRVFILDEVTLLPRGFTDLLMMKIHMEGNL 1153
Query: 3927 RHCLVVLLFDPLQARYHNKLDESVLTFEHDVDRLI-SGVDLRYIYSTYRMSPFFNRFCDV 4103
+ +V L DPLQA Y ++ DES L E +V RL GV+ Y + +YR++ F R +
Sbjct: 1154 KKSTIVCLGDPLQASYFSQKDESYLEREPEVKRLFPEGVE--YKWFSYRINRFVARQLSI 1211
Query: 4104 PCLNDEPRDASQKIWFFDDVYSISSQADDRNEHCDVLLVESDLEKKAFSSVIKVMTFGES 4283
N+ P +Q + DV S +V+LV S +EK+ + ++ + MTFGES
Sbjct: 1212 TTRNEFPGIDNQS-QVYGDVPSAIHSIQKSGVKVEVILVASMIEKELYCNLCQTMTFGES 1270
Query: 4284 QGLTFDHVCILLSESSASSNEYRWVVALTRARKRISLCCTFLGGLDEFKVKKKGGLILSL 4463
QGLTF I+LSE + ++ +VA+TR + S G +E+ K GL+ L
Sbjct: 1271 QGLTFGVGIIVLSEEAKLCSDAHIMVAVTRFNRGFSYALGSKGTKEEYMRGIKNGLLSRL 1330
Query: 4464 LE--GEVMTFELFNRMVKCNLIRDVKKNGCH-DEVDREERLSGDPFLKPFIFLGQRIAQE 4634
G F L + + N + + G DE+DREERLSGDP+LK IFLG+R
Sbjct: 1331 CSSIGASKDFILSSSPIPLNFSEKMIQKGAGLDEMDREERLSGDPWLKTQIFLGKRFHLR 1390
Query: 4635 NCVVDDCEPDEPRCQTHLFITEPNFGLCYNFDFIREKEQREYREDMLATNQFCDSYEKTY 4814
+ C+ ++ + H+ ++ L ++ +E RE++ +NQF + +
Sbjct: 1391 EPLGQVCQIEDSAIKCHVPLSNQQT-LYVELSRMKAREDREFKGRDGWSNQFREEAGPNW 1449
Query: 4815 IKGKRETVGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEEENYQRLQKAHLIGGLLYQ 4994
K + P+ F+AIYP+H DDD+TF+ A+KKRL F NY + +++ G L Q
Sbjct: 1450 -KFPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDSVANNYTKFKQSQSRGQYLLQ 1508
Query: 4995 NFKKKMGLSFQFDQGLFEESVNAFERKKLEKSCGTIQSHSIRSDIDWKLNDVFLFMKSQL 5174
F K + L +Q L + FE KL KS TI +H+ RSD DW L+ +FLFMKSQL
Sbjct: 1509 VFLKHVDLKPSRNQALLNQCKQEFEETKLSKSAATIGAHAQRSDPDWPLDRIFLFMKSQL 1568
Query: 5175 CTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQVRNQLPEEIYIHSNKNFDDLDS 5354
CTK+EK+F DAKAGQTLACFQH ILV+F+PWCRY+E + + LPE YIH KNF +L++
Sbjct: 1569 CTKFEKRFEDAKAGQTLACFQHKILVEFSPWCRYVEKILTSCLPENFYIHQRKNFSELEA 1628
Query: 5355 WVKKFFQRDICVESDYEAFDASQDEYILSFELHLMKDAHFPQIVIDAYTDLKCKLGCKLG 5534
+ K++ +CVESDY AFD SQD IL+FE+ L++ + + V+++Y +KC LGC+LG
Sbjct: 1629 FAKRYSDGSVCVESDYTAFDVSQDHTILAFEVELLRYIGWDEAVLNSYIKMKCTLGCRLG 1688
Query: 5535 HFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRSGQPIAFAGDDMCALNNLPVCHDFDDLF 5714
F+IMRFTGEF TFLFNTLANMAFT CRYE + G PI FAGDDMCAL NL + +
Sbjct: 1689 GFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREIASHEHIL 1748
Query: 5715 EAISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSY 5894
+SLKAKV RT PMFCGWRL G++KEP L+Y R VAIE G++L+ +++Y +E S+
Sbjct: 1749 NKLSLKAKVNRTNVPMFCGWRLCQDGLIKEPCLIYERLNVAIENGRLLDVIDSYYLEFSF 1808
Query: 5895 AYRLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVRDLFIEQS 6035
AY+L ERL++ L+ E Q+ YHQ + RF V + L+ R + S
Sbjct: 1809 AYKLGERLFQYLEIE-QLNYHQVLTRFFVKNSHLLRGGARKSVFQNS 1854
Score = 172 bits (437), Expect = 2e-39
Identities = 126/408 (30%), Positives = 201/408 (49%), Gaps = 9/408 (2%)
Frame = +3
Query: 69 SNKTAIESILGNFEKKHVDAIYSAAAQTLIAHSDFRNKHFAYALNSYQKKVASKLGIELY 248
S +T E +L + + I + + L + R F+YAL K+ +K G+ L
Sbjct: 4 SYRTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSYALPDKTKEWFTKAGVYLS 63
Query: 249 PNGYVPHSHPLSKIFENHLLFDVLPGVVNTSKLIMC-SIKESKVLVFKNRVNGRAPSHTG 425
P + HSHP K ENH+L++++ ++ I C SIK +K+ + G
Sbjct: 64 PFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIACLSIKANKMSKMERM---------G 114
Query: 426 PASVDSLVSTVSFVNRLVSSKDVSRYTEEADAFFSLSNPKGELFSNNFIKSISGKEAIFF 605
P SV + +NRLV+S+D SRY + + + PK S N+ F
Sbjct: 115 PHSVKNY----DIINRLVTSRDKSRYGDLTEPS-RVGGPK----STNY----------FI 155
Query: 606 HDEVHHWSKKQMFSFLKRTRVKRFIFTIVYPPEILKKFANSQNPKVYDFQVHKGKLFFFP 785
HDE+H+W++KQ+ +FL+ K T+V+PPEILK + NS P +Y F++ + F P
Sbjct: 156 HDEIHYWTRKQLETFLELKSPKNLWVTMVFPPEILKGYKNSVLPFLYKFEIEGDNMVFMP 215
Query: 786 DGVRTEAYEQQLNLHWLFSASHFKSGDST-----WTVTRHKSIYAHHLFEITAG-DLITD 947
DGVR+E+Y Q + +L S + DS ++VT ++ +HH+F I + D
Sbjct: 216 DGVRSESYTQPIENGYLLSTNCISFTDSNKRKRQYSVTLVYTLGSHHVFHIFPKLGTMED 275
Query: 948 SKIFFSDYNSIDMSKMFLNRFR-SYDVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQI 1124
F Y+ D+ +F R FP+S K++ YL LKKPD +S +AKLRQ+
Sbjct: 276 EVRRFGPYDLFDVGVLFKQPVRVPIQDFPLST--FKKIFIYLSSLKKPDEQSAVAKLRQL 333
Query: 1125 IGDDVEIKEFLFFEQFCKRLIKRQ-TSWGLFGYSFMEKLTDVALSKMP 1265
+++ + ++F +R+ K SWG SF + L D K+P
Sbjct: 334 CDNEISFEAVALIQEFARRVEKGGIQSWGC---SFFDYLKDFFFDKIP 378