BLASTX nr result

ID: Rehmannia25_contig00000818 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000818
         (1761 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64710.1| putative transposase [Ipomoea tricolor]                95   1e-19
ref|XP_003591246.1| Replication protein A 70 kDa DNA-binding sub...    73   4e-10

>dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
          Length = 517

 Score = 94.7 bits (234), Expect(2) = 1e-19
 Identities = 76/337 (22%), Positives = 127/337 (37%)
 Frame = -3

Query: 1552 MAPLFCLIKDVNMSKHQWALKLRLVRAYEKPGYNDPNNINSLECVFHDAEVCKLFSLMIF 1373
            MAPL+ L +D++      A+K+RL+R+YE P      +I   EC+FHD E          
Sbjct: 1    MAPLYILGRDISPMNTTSAIKVRLIRSYEVPERRGAASIKCQECIFHDKE---------- 50

Query: 1372 DMSKKSILF*XXXXXXXXXXXXXFSFKILLQGDRIHGTIKKLNMSQFKSKLVEGNVYAIK 1193
                                           G  +H  I K  + ++ + L  G VY+I+
Sbjct: 51   -------------------------------GTVLHVNIPKEFVEKYSAMLKIGQVYSIR 79

Query: 1192 DFVVCNYTDKYKTTSSRYKMIFHQKTNVVQVADQSFPRLLFSFKSYPELRNAEGVDETTX 1013
            +F+V +    YKT+  +Y + F+ KT V ++ D  FP  +F  +   +L+    ++E   
Sbjct: 80   NFLVISNFYTYKTSPHKYMLKFYYKTVVRELKDIVFPSHMFRLQPLSQLKQKIDINE--- 136

Query: 1012 XXXXXXXXXXXXXXXYDKCRQKNXXXXXXXXXXXXFPKKNSDIIGRIVTMQSVQTKEYGG 833
                                                 K+  D+IG +V + + Q K   G
Sbjct: 137  -------------------------------------KELIDLIGMVVEINTPQDKVIAG 159

Query: 832  KMTRFIDITLEDLE*LFSSKSYSTIIXXXXXXXXXXXXXXXXXX*FKKLDYFIIILYRNN 653
            K TR ID  LED E                                              
Sbjct: 160  KATRLIDFLLEDTE--------------------------------------------GT 175

Query: 652  RISCTLWEEYVDAILPYLENHTFDPLVVIIQMCRAKV 542
            +I CT+W+++V  + P+ ++   DP+++++Q CR KV
Sbjct: 176  QIKCTVWDDHVSKLEPFYQSTKQDPVIILLQFCRVKV 212



 Score = 30.4 bits (67), Expect(2) = 1e-19
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 444 EVKVSNTFHVTKLIVNGDIEEIENFRTRFE 355
           ++KV ++F VT++ VN D  E + FR R +
Sbjct: 218 DIKVCSSFDVTQIWVNSDFPEFQEFRDRLK 247


>ref|XP_003591246.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355480294|gb|AES61497.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 524

 Score = 72.8 bits (177), Expect = 4e-10
 Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 1/257 (0%)
 Frame = -3

Query: 1282 QGDRIHGTIKKLNMSQFKSKLVEGNVYAIKDFVVCNYTDKYKTTSSRYKMIFHQKTNVVQ 1103
            +G RIH T++K  +++F+S + EG  Y + + +V      YK TS ++K+     ++  +
Sbjct: 50   KGGRIHATVRKDLVARFRSMVEEGATYELHNAIVAINEGPYKITSHKHKLGMLHNSSFTK 109

Query: 1102 VADQSFPRLLFSFKSYPELRNAEGVDETTXXXXXXXXXXXXXXXXYDKCRQKNXXXXXXX 923
                + P  +F F S+ E+ ++  V+ET                                
Sbjct: 110  KDLPTIPINVFDFMSFNEILSS-NVEET-------------------------------- 136

Query: 922  XXXXXFPKKNSDIIGRIVTMQSVQTKEYGGKMTRFIDITLEDLE*LFSSKSYSTIIXXXX 743
                     ++D+IG ++    V+  E  G+ ++ ID+TL+DLE                
Sbjct: 137  ---------SADVIGHVIERGDVKETENEGRKSKVIDLTLQDLE---------------- 171

Query: 742  XXXXXXXXXXXXXX*FKKLDYFIIILYRNNRISCTLWEEYVDAILPYLENH-TFDPLVVI 566
                                        NNR+ C+LW E+ D I+ +  NH    P+V+I
Sbjct: 172  ----------------------------NNRLHCSLWGEHADKIVSFFVNHDNSSPVVLI 203

Query: 565  IQMCRAKVFRGMMHKLN 515
            +Q C+ + + G M  +N
Sbjct: 204  LQFCKTRKYLGAMGIVN 220


Top