BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000619
         (1281 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        274   7e-92
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   253   1e-84
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             262   2e-83
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   279   3e-83
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   265   4e-83
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         272   2e-82
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   254   3e-82
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...   260   6e-82
gb|AFB73912.1| polyprotein [Citrus sinensis]                          249   3e-81
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   249   2e-80
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    263   2e-80
gb|AFB73911.1| polyprotein [Citrus sinensis]                          248   2e-79
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   247   4e-78
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   242   2e-76
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     281   3e-73
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         240   4e-73
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   215   7e-72
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    226   6e-71
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   271   3e-70
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]        270   7e-70

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  274 bits (701), Expect(2) = 7e-92
 Identities = 140/281 (49%), Positives = 187/281 (66%), Gaps = 28/281 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE---- 597
            P ++ EA++S     WL AM +EM SL  N TW L+P P N  +++CKW+FK +NE    
Sbjct: 814  PANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPD 872

Query: 596  CESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFL 417
             E  ++KARLVA+GFTQ+EG+D+ EIF+PVVK +++RI+LA+ A  + EL+QMDVKTAFL
Sbjct: 873  VEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFL 932

Query: 416  HGDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECML--------- 264
            HG+LEE+I M QP+GF  K   D+VCLL KSLYGLKQSPRQW ++FD+ M+         
Sbjct: 933  HGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRY 992

Query: 263  ---------------XLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMN 129
                            LL+YVDDML+ S     IE +KN L A+F+MK LG+A RILGM+
Sbjct: 993  DSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMD 1052

Query: 128  IVRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            I+RDR   T+FL+Q  Y++K+L +F M    PV  PL   F
Sbjct: 1053 IIRDRSAGTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQF 1093



 Score = 91.7 bits (226), Expect(2) = 7e-92
 Identities = 55/152 (36%), Positives = 80/152 (52%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            GK  ++ NL+VFGC A++H    KLE R+ K VF+GYP+GVKGY++W + +   K I SR
Sbjct: 641  GKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVSR 698

Query: 1099 DVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDV 920
            DV+F+E        S+ L E       ++  P  +    SE   V  E L +      + 
Sbjct: 699  DVVFHE--------SVLLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSS-EKEA 749

Query: 919  PENHENAVVHDDLVDVNENENVDLHDYQLARD 824
              + E A    +  +V+E    DL +YQLARD
Sbjct: 750  ASDDERATAESEEHEVSELPQADLQNYQLARD 781


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  253 bits (646), Expect(2) = 1e-84
 Identities = 130/244 (53%), Positives = 168/244 (68%), Gaps = 27/244 (11%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P+SY+EA++SK S  WL++M++EM SL  N TW LVP P     VDCKWLFK+K+     
Sbjct: 914  PRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXD 973

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E  ++K+RLVAKGF+QKEGIDY E+F+PVVK  ++R++LA+ + FN EL Q+DVKTAFLH
Sbjct: 974  EPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLH 1033

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G+LEE+IYM+QP+GFVD +  D VC LKKSLYGLKQSPRQW K+FD  M           
Sbjct: 1034 GNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYD 1093

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LL+YVDDML+ +     I  +K  LS++F+MK LG A +ILGM I
Sbjct: 1094 SCVYFKTLPDGSFIYLLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEI 1153

Query: 125  VRDR 114
             RDR
Sbjct: 1154 WRDR 1157



 Score = 89.0 bits (219), Expect(2) = 1e-84
 Identities = 55/145 (37%), Positives = 73/145 (50%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            GK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY  GVKGYRLW   +   K I SR
Sbjct: 750  GKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISR 809

Query: 1099 DVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDV 920
            DV F+ES               G   +   L G S  D   N  VE E    + P+ N V
Sbjct: 810  DVTFDESAM------------FGQRKEFGDLAGTSKTDLGANQKVEFE---VDAPMENGV 854

Query: 919  PENHENAVVHDDLVDVNENENVDLH 845
             +  E   V    +D N+++++  H
Sbjct: 855  DDTSEEQPV----IDQNDSQSIAAH 875


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  262 bits (670), Expect(2) = 2e-83
 Identities = 136/275 (49%), Positives = 182/275 (66%), Gaps = 26/275 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P ++QEA+ S   + W  AM EE+ +LH NNTW LVP P     +  KW+FK+K   +  
Sbjct: 781  PSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQ 840

Query: 584  --RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 411
              R++ARLV KG+ QKEGID+ EIF+PVV+ TTVR++LA+CA FN  L+Q+DVKTAFLHG
Sbjct: 841  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHG 900

Query: 410  DLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDE---CM--------- 267
            DLEE+IYM QP+GF DK+N + VC L KSLYGLKQ+PR W K+FD    C+         
Sbjct: 901  DLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADP 960

Query: 266  ------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
                        + LL+YVDDML+       I+ +K  L+ +F+MK LG AN+ILGM I 
Sbjct: 961  CAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIH 1020

Query: 122  RDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPL 18
            RDR N  ++L+Q +Y++KILS+FSM     ++ PL
Sbjct: 1021 RDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPL 1055



 Score = 75.5 bits (184), Expect(2) = 2e-83
 Identities = 50/139 (35%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGC---AAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTI 1109
            GK +D+SNL +FG    A +  Q++ KL+P+S+KC FLGY +GVKGYRLW       K +
Sbjct: 630  GKPVDYSNLHIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLW--DPTAHKVV 687

Query: 1108 TSRDVIFNESDFPC--LSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQP 935
             SRDVIF E       +  S    +PE    +VE+        E+E  H E E      P
Sbjct: 688  ISRDVIFVEDRLQRGEVDDSTEKEKPETTQIQVEE-EFEQDSSEAEPAHEEPEPESSGAP 746

Query: 934  VANDVPENHENAVVHDDLV 878
                          H D V
Sbjct: 747  TTRQSDREKRRPTWHSDYV 765


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  279 bits (714), Expect(2) = 3e-83
 Identities = 142/279 (50%), Positives = 188/279 (67%), Gaps = 26/279 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P+SYQEA + K+   W NA +EEM+SL  N TW LV KP N  ++ C+WLFK+K+     
Sbjct: 517  PESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGV 576

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E VRFKARLVAKG+TQ+EG+DY EIFAPVVK T++R+++++    + EL+QMDVKTAFLH
Sbjct: 577  EPVRFKARLVAKGYTQREGVDYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLH 636

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF--------------D 276
            GDLEE++YM QP+GF+  K  D VCLLKKSLYGLKQSPRQWNK+F              D
Sbjct: 637  GDLEEELYMEQPEGFITDKTKDKVCLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHD 696

Query: 275  ECM---------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
             C+         + LL+YVDDML+       +  +K  LS +F+MK +G A+RILG +I 
Sbjct: 697  ACVYVKQVEQGFVYLLLYVDDMLIAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDIT 756

Query: 122  RDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            RDRK   + L+Q  Y+ KI+ +F++  A  V  P+ AHF
Sbjct: 757  RDRKKGILRLSQAPYIRKIVQRFNLDEARVVRTPIGAHF 795



 Score = 58.2 bits (139), Expect(2) = 3e-83
 Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
 Frame = -3

Query: 1264 FSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFN 1085
            + +L+     A+VH    KL+PR+ K +F+GYP G KGY++WL  E   K + SR+VIF 
Sbjct: 344  YKHLRRLRAVAYVHVDQGKLKPRAIKGIFIGYPSGTKGYKVWLLEEQ--KCVISRNVIFQ 401

Query: 1084 ESDFPCLSASLPLSEPEGAPNKVE-QLPGLSHIDESENMHVETESLPENQPVANDVPENH 908
            E           L++ E    K + +    +H+  S+   V  +    +     +  EN 
Sbjct: 402  EE-----VVYKDLNDKETVVKKEDIRTQTDNHLVISKTKEVSDQGGVTHIEECEESDEND 456

Query: 907  ENAVVHDDLVDVNENENVDLHDYQLARD 824
            E      +  D        L +YQLA+D
Sbjct: 457  EQEPETVNETDPTVESEGSLANYQLAKD 484


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  265 bits (678), Expect(2) = 4e-83
 Identities = 142/280 (50%), Positives = 178/280 (63%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            PKSYQEAL       W  AM EEM S+  N+TW LV KP    ++ C+W+F  K      
Sbjct: 816  PKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGV 875

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E+ RF ARLVAKGFTQKEG+DY EIF+PVVK  ++R +L++   +N EL+QMDVKTAFLH
Sbjct: 876  EAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLH 935

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G LEE+IYM QP+GF  K+  + VCLLK+SLYGLKQSPRQWN +FDE M           
Sbjct: 936  GFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYD 995

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LL+YVDDML+ S+    +  +K  LS +F+MK LGDA +ILGM I
Sbjct: 996  SCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEI 1055

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
             RDR    + L+Q  YV+K+L  F M  A PV+ PL  HF
Sbjct: 1056 SRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHF 1095



 Score = 71.2 bits (173), Expect(2) = 4e-83
 Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
 Frame = -3

Query: 1267 DFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIF 1088
            D S+L+ FGC A++H    KL PRSKK +F  YPEGVKGY++W+  +   K + SR+VIF
Sbjct: 637  DLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIF 694

Query: 1087 NES-DFPCLSASLPLSEPEGAPNKVEQLPGLSHID------ESENMHVETESLPENQPVA 929
             E   F  L      +  E     +   P ++  +       +++    +E+   + PV 
Sbjct: 695  REQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVL 754

Query: 928  NDVPENHENAVVHDDLVDVNENENVDLHDYQLARD 824
            N    + +     +D   V      DL  YQL RD
Sbjct: 755  NSPTHSQDEESEEEDSDAVE-----DLSTYQLVRD 784


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  272 bits (695), Expect(2) = 2e-82
 Identities = 138/279 (49%), Positives = 189/279 (67%), Gaps = 26/279 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE--CE 591
            P+SY+EA++S +   W  AM EEMNSL+VN+T+ LV  P N   +  +W+++VK+E    
Sbjct: 809  PESYEEAMESDQKRQWFEAMQEEMNSLYVNDTFELVKAPKNRKALKNRWVYRVKHEEGTS 868

Query: 590  SVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 411
              RFKARLV KGF+QK+GID+ EIF+PVVKF+++R++L L A+ + E++QMDVKTAFLHG
Sbjct: 869  VPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLGLAARLDIEIEQMDVKTAFLHG 928

Query: 410  DLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF---------------- 279
            DL+E+IYM QP+GF  K   D+VC LKKSLYGLKQ+PRQW KKF                
Sbjct: 929  DLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQWYKKFTSVMSKHGYKKTSSDH 988

Query: 278  --------DECMLXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
                    D+  + LL+YVDDML++      I+ +K  LS  F MK +G A +ILGM I+
Sbjct: 989  CVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAKQILGMKII 1048

Query: 122  RDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            RDR+N  ++L+Q  Y+EK+L +F M+ A PV+ PL  HF
Sbjct: 1049 RDRQNKKLWLSQEKYIEKVLERFHMNEAKPVSTPLDMHF 1087



 Score = 62.4 bits (150), Expect(2) = 2e-82
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 7/139 (5%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVD---KLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTI 1109
            GK++ + +L+VFGC AFVH   D   KL+ ++++C+F+GY     GYRL+   E   K +
Sbjct: 635  GKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEK--KLV 692

Query: 1108 TSRDVIF--NESDFPCLSASLPLSEPEGAPNKVEQLPG--LSHIDESENMHVETESLPEN 941
             SRDV+F  N++         P S   G+   +E +       +DE +      + +P+ 
Sbjct: 693  RSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEPVSRRYTDDVDEVQENVQNGDPVPDY 752

Query: 940  QPVANDVPENHENAVVHDD 884
            Q    DV + H + VVH +
Sbjct: 753  QGDTVDV-DGHADDVVHQE 770


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  254 bits (648), Expect(2) = 3e-82
 Identities = 132/280 (47%), Positives = 181/280 (64%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P+ Y +A K K    W   M EE++SL  N TW +V  P    V+ C+WLFK+K      
Sbjct: 820  PQCYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGV 879

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E+ R+KARLVA+GFTQ++GIDY E+FAPVVK  ++RI+++   + + EL+QMDVKT FLH
Sbjct: 880  EAQRYKARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTFLH 939

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF--------------D 276
            G+L++ +YM QP+GF      D VCLLKKSLYGLKQ+PRQWNKKF              D
Sbjct: 940  GELDQVLYMEQPEGFEVNPEKDQVCLLKKSLYGLKQAPRQWNKKFHAFMLSLQFARSEHD 999

Query: 275  ECM----------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
             C+          + LL+YVDDMLL +     I  +K  LS KF+MK +G A+RILG++I
Sbjct: 1000 SCVYVKEVNPGEFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDMGAASRILGIDI 1059

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            +R+RK  T+ L+Q  YV+K++ +F M+ A  V+ P+ AHF
Sbjct: 1060 IRNRKEGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAHF 1099



 Score = 80.1 bits (196), Expect(2) = 3e-82
 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
 Frame = -3

Query: 1276 KEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRD 1097
            K+  + +L+ FGC A+VH    KL+PR+ K VFLGYP+G KGY++WL  E   K + SR+
Sbjct: 648  KKPGYKHLRRFGCIAYVHLDQGKLKPRALKGVFLGYPQGTKGYKVWLLDEE--KCVISRN 705

Query: 1096 VIFNESD-FPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDV 920
            ++FNE+  +  +  S      E +   +  L G +    S   H E            D 
Sbjct: 706  IVFNENQVYKDIRES-----SEQSVKDISDLEGYNEFQVSVKEHGECSKTGGVTIEEIDQ 760

Query: 919  PENHENAVVHDDLVDVNENENVDLHDYQLARD 824
              + EN+V  + L+      ++DL +YQ ARD
Sbjct: 761  ESDSENSVTQEPLI-----ASIDLSNYQSARD 787


>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  260 bits (664), Expect(2) = 6e-82
 Identities = 135/280 (48%), Positives = 184/280 (65%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P  YQ+AL+      WL A++EE+ SL  NNTW+LV +      + CKW+FK K+     
Sbjct: 634  PNDYQKALQDSDYKMWLKAVDEEIESLLKNNTWVLVNRDQFQKPIGCKWVFKRKSGIVGV 693

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E  RFKARLV KG++QKEGIDY EIF+PVVK  ++R++L++    + EL+QMDVKTAFLH
Sbjct: 694  EKPRFKARLVVKGYSQKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDMELQQMDVKTAFLH 753

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G L+E IY+ QP+G+V K+ PD VCLLK+SLYGL+QSPRQWN +F+E M           
Sbjct: 754  GYLDETIYIEQPEGYVHKRYPDKVCLLKRSLYGLRQSPRQWNNRFNEFMQKIGYERSKYD 813

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LL+YVDD+L+ S   +++  +K  L+++F+MK LGDA +ILGM I
Sbjct: 814  SCVYFKELQSGEYIYLLLYVDDILIASRDKRTVCDLKALLNSEFEMKDLGDAKKILGMEI 873

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            VRDRK  T+ ++Q  Y+ K+L  F M  A PV  P+ AHF
Sbjct: 874  VRDRKAGTMSISQEGYLLKVLGNFGMDQAKPVFTPMGAHF 913



 Score = 72.8 bits (177), Expect(2) = 6e-82
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 26/164 (15%)
 Frame = -3

Query: 1267 DFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIF 1088
            +FS LK FGC  +V+ +  KL+PR+KK VF+GYP GVKG+R+W+  E   +   SR+V+F
Sbjct: 455  NFSGLKRFGCVVYVYSQEGKLDPRAKKGVFVGYPNGVKGFRVWMIEEE--RCSISRNVVF 512

Query: 1087 NES----------------DFPCLSASLPLSEPEG--APNKVEQLPGLSHID---ESENM 971
             E                 DFP  +  +P  E  G    +++    G+S  D    SE  
Sbjct: 513  REDVMYKDILNQSTSGMSFDFPLATNRIPSFECAGNRKEDEISVQGGVSDDDTKQSSEES 572

Query: 970  HVETESLPENQ-----PVANDVPENHENAVVHDDLVDVNENENV 854
             + T S  +N       +A D P+      + D L D   NE V
Sbjct: 573  PISTGSSGQNSGQRTYQIARDKPKRQTK--IPDKLRDYELNEEV 614


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  249 bits (636), Expect(2) = 3e-81
 Identities = 129/279 (46%), Positives = 178/279 (63%), Gaps = 26/279 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P ++ EAL S   A W+ AM EE+ +LH N TW LVP P     +  KW++K+K +    
Sbjct: 792  PSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQ 851

Query: 584  --RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 411
              R++ARLV KG+ QKEGID+ EIF+PVV+ TTVRI+LA+CA F+  L+Q+DVKTAFLHG
Sbjct: 852  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHG 911

Query: 410  DLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM------------ 267
            +LEE+IYM QP+GF +    + VC L KSLYGLKQ+PR W K+FD  +            
Sbjct: 912  ELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDH 971

Query: 266  ------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
                        + LL+YVDDML+       I+ +K  L+ +F+MK LG AN+ILGM I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 122  RDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            RDR N  ++L+Q +Y++KIL +F+M     ++ PL  +F
Sbjct: 1032 RDRNNRKIWLSQKNYLKKILRRFNMQDCKSISTPLPVNF 1070



 Score = 81.3 bits (199), Expect(2) = 3e-81
 Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVH---QKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTI 1109
            GK  D+S L  FGC  +V    Q+  KL+P+S+KC+FLGY +GVKGYRLW       K +
Sbjct: 640  GKPADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLW--DPTAHKIV 697

Query: 1108 TSRDVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVA 929
             SRDVIF E           L   +G    V+        ++SE + V  E+ PEN   +
Sbjct: 698  ISRDVIFVEDQ---------LQRKDGDDGTVK--------EKSETVPVYVENNPENSDSS 740

Query: 928  NDVPENHENAVVHDDLVDVNEN 863
               PE+ E   V  +  +V  +
Sbjct: 741  EAAPEHEEQEPVESEAPEVRRS 762


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  249 bits (637), Expect(2) = 2e-80
 Identities = 130/280 (46%), Positives = 179/280 (63%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P++Y+EA++S +   W  A  EEM+S+  N+TW ++ KP    V+ CKW+FK K     V
Sbjct: 823  PETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGV 882

Query: 584  ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
               R+KARLVAKGF+Q+EGIDY EIF+PVVK  ++R +L++  QF+ EL+Q+DVKTAFLH
Sbjct: 883  EPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLH 942

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G+L+E I M QP+G+ D+ + + VCLLKKSLYGLKQSPRQWN++FD  M           
Sbjct: 943  GNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYN 1002

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LL+YVDDML+ S     I+ +K  L+ +F+MK LG A +ILGM I
Sbjct: 1003 PCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEI 1062

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
             R+R+   + L+Q  YV  +L  F M  +     PL AHF
Sbjct: 1063 TRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHF 1102



 Score = 78.6 bits (192), Expect(2) = 2e-80
 Identities = 47/152 (30%), Positives = 79/152 (51%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            G   D+  LK FG  A++H    KL PR+KK +FLGYP+GVK +++WL  +   K + SR
Sbjct: 644  GHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGYPDGVKRFKVWLLEDR--KCVVSR 701

Query: 1099 DVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDV 920
            D++F E+          +SE +    +VE+      + E +N+  + E+  E    +N  
Sbjct: 702  DIVFQENQMYKELQKNDMSEEDKQLTEVERT-----LIELKNLSADDENQSEGGDNSNQE 756

Query: 919  PENHENAVVHDDLVDVNENENVDLHDYQLARD 824
              +   +   D  V+  ++++  L +Y LARD
Sbjct: 757  QASTTRSASKDKQVEETDSDDDCLENYLLARD 788


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  263 bits (673), Expect(2) = 2e-80
 Identities = 134/280 (47%), Positives = 185/280 (66%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P+SYQEA   K+   W  A +EEM+SL  N TW+LV KP N  ++ C+WLFK+K+     
Sbjct: 846  PQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGV 905

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E VR+KA+LVAKG+T +EG+DY EIFA VVK T++RI++++    + EL+QMDVKTAFLH
Sbjct: 906  EPVRYKAQLVAKGYTHREGVDYQEIFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLH 965

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G+LEE++YM QP+G + +   + VCLLKKSLYGLKQSPRQWNK+F+  M           
Sbjct: 966  GELEEELYMEQPEGCISEDGENKVCLLKKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHD 1025

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         L LL+YVDDML+       I  VK  LS +F+MK +G A+RILG++I
Sbjct: 1026 ACVYVKQVSEQEHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDI 1085

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            +RD KN  + ++Q SY+  ++ +F+M+ A     P+ AHF
Sbjct: 1086 IRDMKNGVLRMSQASYIHNVVQRFNMAEAKVTRSPIGAHF 1125



 Score = 64.3 bits (155), Expect(2) = 2e-80
 Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
 Frame = -3

Query: 1276 KEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRD 1097
            K+  + +L+ FG  A+VH    KL+PR+ K +F+GYP G KGY++WL  E   K + SR+
Sbjct: 667  KKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGYPAGTKGYKIWLLEE--HKCVISRN 724

Query: 1096 VIFNE---------SDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPE 944
            V+F+E          +    S + P S  +    KV + PG  +++  E + V  E   +
Sbjct: 725  VLFHEESVYKDTMKKERVVESEAEPASHSKSTLIKV-KTPG--NLNSGEVIQVSDEEESD 781

Query: 943  NQPVANDVPENHENAVVHDDLVDVNENENV-DLHDYQLARD 824
                    PE           V++ E +    L +YQLARD
Sbjct: 782  ESVEEEQEPETQ---------VELPETQTTSSLANYQLARD 813


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  248 bits (633), Expect(2) = 2e-79
 Identities = 132/283 (46%), Positives = 181/283 (63%), Gaps = 32/283 (11%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P ++ EAL S   A W+ AM EE+ +LH N TW LVP P     +  KW++K+K +    
Sbjct: 792  PSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQ 851

Query: 584  --RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 411
              R++ARLV KG+ QKEGID+ EIF+PVV+ TTVRI+LA+CA F+  L+Q+DVKTAFLHG
Sbjct: 852  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHG 911

Query: 410  DLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM------------ 267
            +LEE+IYM QP+GF +    + VC L KSLYGLKQ+PR W K+FD  +            
Sbjct: 912  ELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDH 971

Query: 266  ------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
                        + LL+YVDDML+       I+ +K  L+ +F+MK LG AN+ILGM I 
Sbjct: 972  CAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIH 1031

Query: 122  RDRKNSTVFLNQISYVEKILSKFSM------STANPVNVPLAA 12
            RDR N  ++L+Q +Y++KIL +F+M      ST+ PVN  L++
Sbjct: 1032 RDRNNMKIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSS 1074



 Score = 76.6 bits (187), Expect(2) = 2e-79
 Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVH---QKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTI 1109
            GK  D+S L  FGC  +V    Q+  KL+ +S++C+FLGY +GVKGYRLW       K +
Sbjct: 640  GKPADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLW--DPTAHKIV 697

Query: 1108 TSRDVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVA 929
             SRDVIF E           L   +G    V+        ++SE + V  E+ PEN   +
Sbjct: 698  ISRDVIFVEDQ---------LQRKDGDDGTVK--------EKSETVPVYVENNPENSDSS 740

Query: 928  NDVPENHENAVVHDDLVDVNEN 863
               PE+ E   V  +  +V  +
Sbjct: 741  EAAPEHEEQEPVESEAPEVRRS 762


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  247 bits (630), Expect(2) = 4e-78
 Identities = 130/280 (46%), Positives = 179/280 (63%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P++Y++A        W  AM+EE++S   NNTW +V +P N  ++ C+W+FK K      
Sbjct: 837  PENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGV 896

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E  RFKARLVAKG+ QKEGIDY EIFAPVVK  ++R++L++ AQ + EL+Q+DVKTAFLH
Sbjct: 897  EEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLH 956

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G+L+EKIYM  P+G+      + VCLL K+LYGLKQ+P+QWN+KFD  M           
Sbjct: 957  GELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKSAYD 1016

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LLIYVDD+L+ S   ++I  +K  L  +F+MK LG A +ILGM I
Sbjct: 1017 SCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEI 1076

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
            +RDR    ++L+Q  Y+ KIL  ++M+ A P   PL AHF
Sbjct: 1077 IRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHF 1116



 Score = 73.2 bits (178), Expect(2) = 4e-78
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
 Frame = -3

Query: 1264 FSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFN 1085
            +S L+ +GC AFVH    KLEPR+KK V +GYP GVKGY++W+  E   K + SR++IF 
Sbjct: 662  YSYLRRYGCVAFVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDER--KCVVSRNIIFQ 719

Query: 1084 ESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHE 905
            E+    +   L   +   +  + +Q       D      V +     +Q + N +P    
Sbjct: 720  EN---AVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVISGG---DQEMVNTIPAPES 773

Query: 904  NAVVHDDLVDVNENENVDLH----DYQLARD 824
              V      D N++E+ D++     Y L RD
Sbjct: 774  PVVSTPTTQDTNDDEDSDVNQSPLSYHLVRD 804


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  242 bits (617), Expect(2) = 2e-76
 Identities = 131/279 (46%), Positives = 179/279 (64%), Gaps = 27/279 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P  Y EA +S     W  AMNEEM S   N+TW +V +P +  V+  +W++K K     V
Sbjct: 814  PADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGV 873

Query: 584  ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
               RFKARLVAKG+ Q++GIDY EIFAPVVK  ++RI++++ AQ + EL+Q+DVKTAFLH
Sbjct: 874  EEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLH 933

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF--------------D 276
            G+L+EKIYM  P+G+ +    D VCLL KSLYGLKQ+P+QWN+KF              D
Sbjct: 934  GELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYD 993

Query: 275  EC----------MLXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
             C           + LL+YVDDML+ +   + I  +K  LS +FDMK LG A RILGM I
Sbjct: 994  SCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEI 1053

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAH 9
            +R+R+ +T++L+Q  Y+ KIL  ++M+ +  V  PL AH
Sbjct: 1054 IRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAH 1092



 Score = 72.4 bits (176), Expect(2) = 2e-76
 Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            GK   +S L+ FGC AFVH    KL PR+KK + +GYP GVKGY++WL  E   K + SR
Sbjct: 635  GKSPIYSYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSR 692

Query: 1099 DVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDV 920
            +VIF E+     ++   + + + A     + P  S++D   +      S  ++  V    
Sbjct: 693  NVIFQEN-----ASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS 747

Query: 919  PENHENAVVHDDLVDVNENENV--DLHDYQLARD 824
            P N   A        VN   ++      YQL RD
Sbjct: 748  PFNPSPATTQTYSEGVNSETDIIQSPLSYQLVRD 781


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  281 bits (720), Expect = 3e-73
 Identities = 143/280 (51%), Positives = 193/280 (68%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEC 594
            P +Y++A++S +SA W+ AM EEM SLH N+ W LVPKP    +V CKW+F+ K   +E 
Sbjct: 782  PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED 841

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            +++ +KARLVAKG++QKEG+DY EIF+PVVK T++R++L++ AQ++ E++QMDVKTAFLH
Sbjct: 842  DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLH 901

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECML---------- 264
            GDLEE IYM QP+GFV+    + VC LKKSLYGLKQSPRQW K FD  ML          
Sbjct: 902  GDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYD 961

Query: 263  --------------XLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                           LL+YVDDML+    +  I+ +K  L A+FDMK LG A +ILG+ I
Sbjct: 962  CCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEI 1021

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
             RDR    ++L+Q  Y+ KIL +F+M+ A  V++PLAAHF
Sbjct: 1022 RRDRNAGKIWLSQEKYIMKILERFNMAEAKVVSIPLAAHF 1061



 Score = 80.5 bits (197), Expect = 1e-12
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVD---KLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTI 1109
            GK +D+SNL+VFGC+A+ H   D   KLEP+S +C+F+G+ +GVKGY+LW       K +
Sbjct: 612  GKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEKGVKGYKLW--DIVNEKKV 669

Query: 1108 TSRDVIFNESDFPCLSASLP-LSEPEGAPNKVEQLPGLSHIDESENMH-----VETESLP 947
             SRDV+F+E +   +S + P +++ E    + EQ      I+E E+        + E  P
Sbjct: 670  ISRDVVFDEREAISISLAKPSVADSEAQVEQNEQGNDEVAIEEPEHQQQPTVMAQVEQSP 729

Query: 946  ---ENQPVANDVPENHENAVVHD 887
               +N P+    PE+ + ++  D
Sbjct: 730  QRGQNSPIP-QAPESFKRSIALD 751


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  240 bits (612), Expect(2) = 4e-73
 Identities = 127/279 (45%), Positives = 177/279 (63%), Gaps = 27/279 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            P  Y+EA++ +    W  AMNEE+ S   N+TW  V +P    ++  +W++K K     V
Sbjct: 844  PADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIYKYKQGIPGV 903

Query: 584  ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
               RFKARLVAKG+ Q+EG+DY EIFAPVVK  ++RI+L++ AQ N EL+Q+DVKTAFLH
Sbjct: 904  EEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLH 963

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF--------------- 279
            G+L+EKIYM  P+G       + VCLL KSLYGLKQ+PRQWN+KF               
Sbjct: 964  GELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYD 1023

Query: 278  ---------DECMLXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                     D+  + LL YVDDML+ ++ +++I+ +K  LS KF+MK LG A +ILG+ I
Sbjct: 1024 SCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEI 1083

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAH 9
            + DR+   ++L+Q SY+ K+L  F+M  + P   PL AH
Sbjct: 1084 IIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAH 1122



 Score = 63.5 bits (153), Expect(2) = 4e-73
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 8/160 (5%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            GK   +S L+ +GC  FVH    KL  R+KK V +GYP GVKGY++WL  E   K + SR
Sbjct: 664  GKAPIYSYLRRYGCVTFVHTDGGKLNLRAKKGVLIGYPSGVKGYKVWLIEEK--KCVVSR 721

Query: 1099 DVIFNES----DFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPV 932
            +V F E+    D       +   E + A + ++        + S     + +  P  +  
Sbjct: 722  NVSFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQSQAQVTPATRGA 781

Query: 931  ANDVPENHENAVVHDDLVDVNENENVDLH----DYQLARD 824
                P  +E     DD+      E  D+H     Y L RD
Sbjct: 782  VTSTPPRYET----DDI------EETDVHQSPLSYHLVRD 811


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  215 bits (548), Expect(2) = 7e-72
 Identities = 111/223 (49%), Positives = 150/223 (67%), Gaps = 27/223 (12%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECESV 585
            PKSY+EALKS K   W NAM EEM+S   ++TW L+ KP    ++ CKW+FK+K     V
Sbjct: 733  PKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGV 792

Query: 584  ---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
               R+KARLVAKGF+Q+EGIDY E+F+ VVK  ++R+ML+L    ++EL+QMDVKTAFLH
Sbjct: 793  EKQRYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLH 852

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            G+LEE+I M QP+GF+ + N + VCLL+KSLYGLKQSPR WN++FD  M           
Sbjct: 853  GNLEERILMSQPEGFIQEGNENKVCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYD 912

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAK 177
                         + LL+YVDDML+ S  +  I+ +KN L+++
Sbjct: 913  PCVYMRDTQTDKAIYLLLYVDDMLIASGNMAIIQELKNKLNSR 955



 Score = 84.0 bits (206), Expect(2) = 7e-72
 Identities = 61/170 (35%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
 Frame = -3

Query: 1279 GKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSR 1100
            G + D S+L+ FGC+A+VH   DK  PR+ K VF+GYP G+KGYR+WL  E   K  TSR
Sbjct: 540  GTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGYPCGIKGYRVWLPKEG--KCTTSR 597

Query: 1099 DVIFNESDFPCLSASLPLSEPEGAPNKVEQLP------GLSH------------IDESEN 974
            +V+FNE++    + S      E A  + ++L         SH            +D+S +
Sbjct: 598  NVVFNETELYKDTLSSADERKEEAEKEYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSSS 657

Query: 973  MHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLHDYQLARD 824
               ET S       +++  EN E + +++++V  +ENE   L DY LARD
Sbjct: 658  QGGETSS------SSSESSENLEESEMNEEVVG-SENEQ-SLDDYLLARD 699


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  226 bits (576), Expect(2) = 6e-71
 Identities = 120/278 (43%), Positives = 170/278 (61%), Gaps = 26/278 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNECES- 588
            P++ +E L   + + W+ AM+EEM SL  N T+ LV  P     + CKW+FK+K +    
Sbjct: 812  PENLKEVLSHPEKSQWMKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGK 871

Query: 587  -VRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHG 411
             VR+KARLV KGF QK+GID+ EIF+PVVK T++R +L++ A  + E++Q+DVKTAFLHG
Sbjct: 872  LVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAFLHG 931

Query: 410  DLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM------------ 267
            DLEE+IYM Q +GF        VC L KSLYGLKQ+PRQW KKFD  M            
Sbjct: 932  DLEEEIYMEQGEGFEVSGKKHMVCKLNKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHP 991

Query: 266  ------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNIV 123
                        + LL+Y D ML++    + I  ++   S  FDMK LG A +ILGM I 
Sbjct: 992  CVYFKRFSDKNFIILLLYTDYMLIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIA 1051

Query: 122  RDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAH 9
            R+ +   + L+   Y+E++L +F+M +A P++ PL ++
Sbjct: 1052 REEQKK-LGLSHEKYIERVLERFNMKSAKPISTPLVSY 1088



 Score = 70.1 bits (170), Expect(2) = 6e-71
 Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
 Frame = -3

Query: 1276 KEIDFSNLKVFGCAAFVH---QKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTIT 1106
            KE+ +S+LKVFGC AF H   ++  KL+ +S  C+F+GY +   GYRLW   +   K I 
Sbjct: 642  KEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKK--KVIR 699

Query: 1105 SRDVIFNESDFPCLSASLPLSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVAN 926
            SRDVIF ES+   +  +  LSE     N +  +P L  I  S N     ES        +
Sbjct: 700  SRDVIFRESE---VGTAADLSEKAKKKNGI--IPNLVTIPSSSNHPTSAES------TID 748

Query: 925  DVPENHENAVVHDDLVDVNE--NENVDLHDY 839
            +V E  E     D++V+  E   +N +  +Y
Sbjct: 749  EVVEQEEQP---DEIVEQGEQLGDNTEQMEY 776


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  271 bits (694), Expect = 3e-70
 Identities = 140/280 (50%), Positives = 186/280 (66%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764  PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
            P+SYQEA++S+    W  A ++EM+SL  N TW LV KP +  ++ C+WLFK+K+     
Sbjct: 839  PQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGV 898

Query: 593  ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
            E  RFKARLVAKG+TQ+EG+DY EIFAPVVK  ++RI+++L    + EL+QMDVKT FLH
Sbjct: 899  EPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLH 958

Query: 413  GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKFDECM----------- 267
            GDLEE++YM QP+GFV   + + VC LKKSLYGLKQSPRQWNK+FD  M           
Sbjct: 959  GDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHD 1018

Query: 266  -------------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
                         + LL+YVDDML+  +    I  VK  LS +F+MK +G A+RILG++I
Sbjct: 1019 ACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDI 1078

Query: 125  VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
             RDRK   + L+Q  Y+ K+L +F+MS A   N P+ AHF
Sbjct: 1079 YRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHF 1118



 Score = 64.7 bits (156), Expect = 8e-08
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = -3

Query: 1264 FSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFN 1085
            + +L+ FG  A+VHQ   KL+PR+ K  FLGYP G KGY++WL  E   K + SR+V+F 
Sbjct: 661  YKHLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQ 718

Query: 1084 ES 1079
            ES
Sbjct: 719  ES 720


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score =  270 bits (691), Expect = 7e-70
 Identities = 137/280 (48%), Positives = 188/280 (67%), Gaps = 27/280 (9%)
 Frame = -2

Query: 764 PKSYQEALKSKKSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEC--- 594
           P+SYQEA  +K+   W  A +EEM+SL  N TW+LV KP +  ++ C+WLFK+K+     
Sbjct: 71  PQSYQEATSNKEWKKWKLATHEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGV 130

Query: 593 ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLH 414
           E VR+KARLVAKG+TQ+EG+DY EIFAPV K T++RI++++    + EL+QMDVKTAFLH
Sbjct: 131 EPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTAFLH 190

Query: 413 GDLEEKIYMRQPKGFVDKKNPDFVCLLKKSLYGLKQSPRQWNKKF--------------D 276
           G+LEE++YM QP GF+ +   + VCLLKKSLYGLKQSPRQWNK+F              D
Sbjct: 191 GELEEELYMEQPDGFISEDGENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHD 250

Query: 275 ECM----------LXLLIYVDDMLLISSCIKSIEHVKNCLSAKFDMKYLGDANRILGMNI 126
            C+          L LL+YVDDML+       I  VK  LS +F+MK +G A+RILG++I
Sbjct: 251 ACVYVKQAGEQDHLYLLLYVDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDI 310

Query: 125 VRDRKNSTVFLNQISYVEKILSKFSMSTANPVNVPLAAHF 6
           +RDRKN  + ++Q  Y+  ++ +F+M+ A     P+ AHF
Sbjct: 311 IRDRKNGVLRMSQARYIHNVVQRFNMAEAKVTRSPIGAHF 350