BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000618
         (884 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   312   9e-83
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        308   1e-81
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]        301   2e-79
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   300   6e-79
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...   296   5e-78
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    296   7e-78
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   295   2e-77
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   293   6e-77
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   293   8e-77
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   292   1e-76
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   292   1e-76
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   292   1e-76
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   292   1e-76
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           291   2e-76
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   290   6e-76
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   289   8e-76
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   289   1e-75
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   286   5e-75
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     286   9e-75
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     285   2e-74

>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  312 bits (800), Expect = 9e-83
 Identities = 157/297 (52%), Positives = 209/297 (70%), Gaps = 3/297 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L NYQLA+DR RR I  P+RF +    ++   V ES+   EP++YQEA + +   +W NA
Sbjct: 476  LANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNA 535

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN---DSVRFKARLVAKGFTQKEG 532
             HEEM+SL  N TW LV KP N  ++ C+WLFK+K+     + VRFKARLVAKG+TQ+EG
Sbjct: 536  THEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREG 595

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            VDY EIFAPVVK T++R+++++    + EL+QMDVKTAFLHGDL+E++YM QP GF+  K
Sbjct: 596  VDYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEGFITDK 655

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYV 172
              D VCLLKKSLYGLKQSPR WNK+F   M+  KF RS++D C+Y K+  +  V+LL+YV
Sbjct: 656  TKDKVCLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHDACVYVKQVEQGFVYLLLYV 715

Query: 171  DDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            DDML+       V  +K  LS +F+MK +G A RILG +I RDRK  ++ L+Q  Y+
Sbjct: 716  DDMLIAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRDRKKGILRLSQAPYI 772


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  308 bits (790), Expect = 1e-81
 Identities = 156/299 (52%), Positives = 210/299 (70%), Gaps = 5/299 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L NYQLARDR RR +R P R+    L +Y     + +   EP  + EA++S H  +WL A
Sbjct: 773  LQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEA 832

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN----DSVRFKARLVAKGFTQKE 535
            M +EM SL  N TW L+P P N  +++CKW+FK +NE     +  ++KARLVA+GFTQ+E
Sbjct: 833  MQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQRE 891

Query: 534  GVDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDK 355
            GVD+ EIF+PVVK +++RI+LA+ A  + EL+QMDVKTAFLHG+L+E+I M QP GF  K
Sbjct: 892  GVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECK 951

Query: 354  KNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPV-FLLI 178
               D+VCLL KSLYGLKQSPR W ++FDD M+S  ++RS YD C+YF  + +  V +LL+
Sbjct: 952  DKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLL 1011

Query: 177  YVDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            YVDDML+ S     +E +KN L A+F+MK LG+AKRILGM+I RDR    +FL+Q  Y+
Sbjct: 1012 YVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYI 1070


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score =  301 bits (771), Expect = 2e-79
 Identities = 150/298 (50%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882 LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
           L NYQLARDR RR I  P+RF +    ++     E++   EP++YQEA  ++  ++W  A
Sbjct: 30  LANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSNKEWKKWKLA 89

Query: 702 MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN---DSVRFKARLVAKGFTQKEG 532
            HEEM+SL  N TWVLV KP++  ++ C+WLFK+K+     + VR+KARLVAKG+TQ+EG
Sbjct: 90  THEEMDSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREG 149

Query: 531 VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
           VDY EIFAPV K T++RI++++    + EL+QMDVKTAFLHG+L+E++YM QP GF+ + 
Sbjct: 150 VDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPDGFISED 209

Query: 351 NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVP-VFLLIY 175
             + VCLLKKSLYGLKQSPR WNK+F   M+   F RS +D C+Y K+  +   ++LL+Y
Sbjct: 210 GENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLY 269

Query: 174 VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
           VDDML+       +  VK  LS +F+MK +G A RILG++I RDRKN V+ ++Q  Y+
Sbjct: 270 VDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYI 327


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  300 bits (767), Expect = 6e-79
 Identities = 153/298 (51%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L  Y+LARDR RRNI  P+RF +    ++   V E+    EP++YQEA++S+  ++W  A
Sbjct: 798  LTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMA 857

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNENDSV---RFKARLVAKGFTQKEG 532
             H+EM+SL  N TW LV KP++  ++ C+WLFK+K+    V   RFKARLVAKG+TQ+EG
Sbjct: 858  THDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREG 917

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            VDY EIFAPVVK  ++RI+++L    + EL+QMDVKT FLHGDL+E++YM QP GFV   
Sbjct: 918  VDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDS 977

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVP-VFLLIY 175
            + + VC LKKSLYGLKQSPR WNK+FD  M S +F RS +D C+Y K  ++   ++LL+Y
Sbjct: 978  SENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLY 1037

Query: 174  VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            VDDML+       +  VK  LS +F+MK +G A RILG++I+RDRK  V+ L+Q  Y+
Sbjct: 1038 VDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYI 1095


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score =  296 bits (759), Expect = 5e-78
 Identities = 149/298 (50%), Positives = 208/298 (69%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882 LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
           L  YQLA+DR RR I  P+RF +    ++     E++   EP++YQEA   +  ++W  A
Sbjct: 29  LAYYQLAKDRERREIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLA 88

Query: 702 MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN---DSVRFKARLVAKGFTQKEG 532
            HEEM+SL  N TWVLV KP++  ++ C+WLFK+K+     + VR+KARLVAKG+TQ+EG
Sbjct: 89  THEEMDSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREG 148

Query: 531 VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
           VDY EIFAPVVK T +RI++++    + EL+QMDVKTAFLHG+L+E++YM QP GF+ + 
Sbjct: 149 VDYQEIFAPVVKHTFIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGFISED 208

Query: 351 NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAKVPVFLLIY 175
             + VCLLKK LYGLKQSPR WNK+F+  M+   F RS +D C+Y K+   +  ++LL+Y
Sbjct: 209 GKNKVCLLKKLLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVTEQEHLYLLLY 268

Query: 174 VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
           VDDML+       +  VK  LS +F+MK +G A RILG++I RDRKN V+ ++Q SY+
Sbjct: 269 VDDMLIAGKNKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQASYI 326


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  296 bits (758), Expect = 7e-78
 Identities = 148/298 (49%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L NYQLARDR RR I  P+RF +    ++     E++   EP++YQEA   +  ++W  A
Sbjct: 805  LANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLA 864

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN---DSVRFKARLVAKGFTQKEG 532
             HEEM+SL  N TWVLV KP+N  ++ C+WLFK+K+ +   + VR+KA+LVAKG+T +EG
Sbjct: 865  THEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREG 924

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            VDY EIFA VVK T++RI++++    + EL+QMDVKTAFLHG+L+E++YM QP G + + 
Sbjct: 925  VDYQEIFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCISED 984

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAKVPVFLLIY 175
              + VCLLKKSLYGLKQSPR WNK+F+  M+   F RS +D C+Y K+ + +  ++LL+Y
Sbjct: 985  GENKVCLLKKSLYGLKQSPRQWNKRFNRFMIDQNFIRSEHDACVYVKQVSEQEHLYLLLY 1044

Query: 174  VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            VDDML+       +  VK  LS +F+MK +G A RILG++I RD KN V+ ++Q SY+
Sbjct: 1045 VDDMLIAGKSKSEINKVKEQLSMEFEMKDMGPASRILGIDIIRDMKNGVLRMSQASYI 1102


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  295 bits (754), Expect = 2e-77
 Identities = 148/298 (49%), Positives = 203/298 (68%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L NYQL RD  RR+IR P RF    + +Y  S+ E +   EPK Y EA+  + S +W+ A
Sbjct: 417  LENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKWMTA 476

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNENDSV---RFKARLVAKGFTQKEG 532
            M EE  SL  N TW LV KP+ C VV CKW+FK K     V   RFKA LVAK +TQ+EG
Sbjct: 477  MQEEFESLLKNGTWQLVDKPKGCKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREG 536

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            +D+ EIF+P+VK T++R++LAL + +N EL QMDV  AFLHG+L+E+I+M+QP GF+ K 
Sbjct: 537  MDFNEIFSPMVKHTSIRVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKG 596

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVP-VFLLIY 175
              + VCLLK+SLYGLKQSPR W K+FD  M S+ + RS +D+C+Y ++      V+LL+Y
Sbjct: 597  KENQVCLLKRSLYGLKQSPRQWYKRFDKFMTSVGYSRSKFDNCVYMRKLTNGSYVYLLLY 656

Query: 174  VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            VDDMLL S  +  + H+K  L ++F+MK LG AK+ILG+  +RDR   ++ ++Q  Y+
Sbjct: 657  VDDMLLASKSITEIAHLKTQLQSEFEMKDLGCAKKILGIEPYRDRSTGILTISQRDYI 714


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  293 bits (750), Expect = 6e-77
 Identities = 148/289 (51%), Positives = 207/289 (71%), Gaps = 13/289 (4%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRFDDF------HLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLN 706
            +A  R RR IR+P R+ D       +  ++  +V E I   EP++Y+EA++S+ S++WL+
Sbjct: 872  IAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLS 931

Query: 705  AMHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKN---ENDSVRFKARLVAKGFTQKE 535
            +M +EM SL  N TW LVP PE    VDCKWLFK+K+    ++  ++K+RLVAKGF+QKE
Sbjct: 932  SMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKE 991

Query: 534  GVDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDK 355
            G+DY E+F+PVVK  ++R++LA+ + FN EL Q+DVKTAFLHG+L+E+IYM+QP GFVD 
Sbjct: 992  GIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDS 1051

Query: 354  KNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVP----VF 187
            +  D VC LKKSLYGLKQSPR W K+FD  M+S +F R+ YD C+YFK    +P    ++
Sbjct: 1052 EKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFK---TLPDGSFIY 1108

Query: 186  LLIYVDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDR 40
            LL+YVDDML+ +     +  +K  LS++F+MK LG AK+ILGM I+RDR
Sbjct: 1109 LLLYVDDMLIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDR 1157


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  293 bits (749), Expect = 8e-77
 Identities = 153/298 (51%), Positives = 202/298 (67%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L  YQL RDR RR I+   ++++ ++  + +   E     EPK+YQEAL     ++W  A
Sbjct: 776  LSTYQLVRDRVRRTIKANPKYNESNMVGFAY-YSEDDGKPEPKSYQEALLDPDWEKWNAA 834

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNENDSV---RFKARLVAKGFTQKEG 532
            M EEM S+  N+TW LV KPE   ++ C+W+F  K     V   RF ARLVAKGFTQKEG
Sbjct: 835  MKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEG 894

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            VDY EIF+PVVK  ++R +L++   +N EL+QMDVKTAFLHG L+E+IYM QP GF  K+
Sbjct: 895  VDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKR 954

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAKVPVFLLIY 175
              + VCLLK+SLYGLKQSPR WN +FD+ M  +K+ RS+YD C+YFK+ N    ++LL+Y
Sbjct: 955  GSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLY 1014

Query: 174  VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            VDDML+ S     V  +K  LS +F+MK LGDAK+ILGM I RDR   ++ L+Q  YV
Sbjct: 1015 VDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYV 1072


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  292 bits (748), Expect = 1e-76
 Identities = 142/294 (48%), Positives = 207/294 (70%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESIDNC-EPKTYQEALKSEHSQEWLNAMHE 694
            +A+ +++R  + P R  ++ +L+ Y  S  E ++N  EP TY+EA++   S+ W++AMHE
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW +VP P+    + CKW+FK K   + ++  ++KARLVA+G++Q  GVDY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R  L++ A  + EL+Q+DVKTAFLHG+L+E IYM QP GF+      
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEK 958

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
            +VC LK+SLYGLKQSPR WNK+FD  MLS  FKRS YD C+Y K     P++LL+YVDDM
Sbjct: 959  YVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDM 1018

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++FDMK LG AK+ILGM I RDRK+ ++FL+Q +Y+
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYI 1072


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  292 bits (748), Expect = 1e-76
 Identities = 142/294 (48%), Positives = 207/294 (70%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESIDNC-EPKTYQEALKSEHSQEWLNAMHE 694
            +A+ +++R  + P R  ++ +L+ Y  S  E ++N  EP TY+EA++   S+ W++AMHE
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW +VP P+    + CKW+FK K   + ++  ++KARLVA+G++Q  GVDY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R  L++ A  + EL+Q+DVKTAFLHG+L+E IYM QP GF+      
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEK 958

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
            +VC LK+SLYGLKQSPR WNK+FD  MLS  FKRS YD C+Y K     P++LL+YVDDM
Sbjct: 959  YVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDM 1018

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++FDMK LG AK+ILGM I RDRK+ ++FL+Q +Y+
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYI 1072


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  292 bits (748), Expect = 1e-76
 Identities = 147/298 (49%), Positives = 205/298 (68%), Gaps = 4/298 (1%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 703
            L NYQL RDR RR I  P+RF +    ++     E++   EP++YQEA   +  ++W  A
Sbjct: 705  LANYQLVRDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLA 764

Query: 702  MHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNEN---DSVRFKARLVAKGFTQKEG 532
             HEE NSL  N TWVLV KP++  ++ C+WLFK+K+     + VR+KARLVAKG+TQ+EG
Sbjct: 765  THEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREG 824

Query: 531  VDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKK 352
            VDY EIFAPV K T++RI++++    + EL+QMDVKT FLHG+L+E++YM QP GF+ + 
Sbjct: 825  VDYQEIFAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDGFISED 884

Query: 351  NPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVP-VFLLIY 175
              + VCLLKKSLYGLKQSPR WNK+F   M+   F RS +D C+Y K+  +   ++LL+Y
Sbjct: 885  GENKVCLLKKSLYGLKQSPRQWNKRFSRFMIDQNFIRSEHDACVYVKQAGEQDHLYLLLY 944

Query: 174  VDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            VDDML+       +  V+  LS +F+MK +G A RILG++I RDRKN V+ ++Q  Y+
Sbjct: 945  VDDMLIAGKSKSEINKVEQ-LSMEFEMKDMGPASRILGIDIIRDRKNGVLRMSQARYI 1001


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  292 bits (747), Expect = 1e-76
 Identities = 146/294 (49%), Positives = 204/294 (69%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRR-NIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNAMHEE 691
            +A+DR RR  +R P+R+    +  Y   V E +D  EP TY+EA+ S  S++W  AM +E
Sbjct: 754  IAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDE 813

Query: 690  MNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDYT 520
            M SLH N TW LV +P    ++ CKW+FK K   +  + V++KAR+VA+GF Q+EGVDY 
Sbjct: 814  MESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYN 873

Query: 519  EIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPDF 340
            EIF+PVV+ T++R++LA+ A  N EL+Q+DVKTAFLHG+L+E+IYM QP GF      + 
Sbjct: 874  EIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENH 933

Query: 339  VCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAKVPVFLLIYVDDM 163
            VC LKKSLYGLKQSPR W K+FD  M+ L + RSSYD C+Y+   N    ++L++YVDDM
Sbjct: 934  VCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDM 993

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     ++ +K  LSA+F+MK LG A++ILGM I RDR+   +FL+Q SY+
Sbjct: 994  LIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYI 1047


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  291 bits (746), Expect = 2e-76
 Identities = 142/294 (48%), Positives = 206/294 (70%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESIDNC-EPKTYQEALKSEHSQEWLNAMHE 694
            +A+ +++R  + P R  ++ +L+ Y  S  E ++N  EP TY+EA++   S+ W++AMHE
Sbjct: 781  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 840

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNE---NDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW +VP P+    + CKW+FK K     ++  ++KARLVA+G++Q  GVDY
Sbjct: 841  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDY 900

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R  L++ A  + EL+Q+DVKTAFLHG+L+E IYM QP GF+      
Sbjct: 901  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEK 960

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
            +VC LK+SLYGLKQSPR WNK+FD  MLS  FKRS YD C+Y K     P++LL+YVDDM
Sbjct: 961  YVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDM 1020

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++FDMK LG AK+ILGM I RDRK+ ++FL+Q +Y+
Sbjct: 1021 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYI 1074


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  290 bits (741), Expect = 6e-76
 Identities = 143/294 (48%), Positives = 205/294 (69%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAMHE 694
            +A+DR +RNI+ P R+ ++ ++ +Y  SV E I+ N EP TY EA+ S+    W+ AMH+
Sbjct: 985  IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 1044

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW LV  P+    + CKW+FK K   + +D  R+KARL+AKG++Q  G+D+
Sbjct: 1045 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDF 1104

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R +L++ A  ++EL+QMDVKTAFLHG+L+E IYM QP GFV     +
Sbjct: 1105 NDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKEN 1164

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
             VC LKKSLYGLKQSPR W K+FD  MLS KF+RS+YD C+Y K      ++LL+YVDDM
Sbjct: 1165 LVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDM 1224

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++F+MK LG AK+ILGM I R R +  ++L+Q  Y+
Sbjct: 1225 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYI 1278


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  289 bits (740), Expect = 8e-76
 Identities = 147/300 (49%), Positives = 210/300 (70%), Gaps = 6/300 (2%)
 Frame = -3

Query: 882  LGNYQLARDRTRRNIRQPSRF--DDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWL 709
            L NY LARDR RR IR P RF  +D  L  +  ++ E  +  EP+TY+EA++S   ++W 
Sbjct: 780  LENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWK 839

Query: 708  NAMHEEMNSLHVNNTWVLVPKPENCSVVDCKWLFKVKNENDSV---RFKARLVAKGFTQK 538
             A  EEM+S+  N+TW ++ KPE   V+ CKW+FK K     V   R+KARLVAKGF+Q+
Sbjct: 840  QATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQR 899

Query: 537  EGVDYTEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVD 358
            EG+DY EIF+PVVK  ++R +L++  QF+ EL+Q+DVKTAFLHG+LDE I M QP G+ D
Sbjct: 900  EGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYED 959

Query: 357  KKNPDFVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKE-NAKVPVFLL 181
            + + + VCLLKKSLYGLKQSPR WN++FD  M++  ++RS Y+ C+Y ++ N    ++LL
Sbjct: 960  EDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLL 1019

Query: 180  IYVDDMLLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            +YVDDML+ S     ++ +K  L+ +F+MK LG A++ILGM I R+R+  ++ L+Q  YV
Sbjct: 1020 LYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYV 1079


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  289 bits (739), Expect = 1e-75
 Identities = 141/294 (47%), Positives = 206/294 (70%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESIDNC-EPKTYQEALKSEHSQEWLNAMHE 694
            +A+ +++R  + P R  ++ +L+ Y  S  E ++N  EP TY+EA++   S+ W++AMHE
Sbjct: 779  IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHE 838

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW +VP P+    + CKW+FK K   + ++  ++KARLVA+G++Q  GVDY
Sbjct: 839  EMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDY 898

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R  L++ A  + EL+Q+DVKTAFLHG+L+E IYM QP GF+      
Sbjct: 899  NDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEK 958

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
            +VC LK+SLYGLKQSPR WNK+FD  MLS  FKRS YD C+Y K     P++LL+YVDDM
Sbjct: 959  YVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSPIYLLLYVDDM 1018

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++FDMK LG AK+IL M I RDRK+ ++FL+Q +Y+
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYI 1072


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  286 bits (733), Expect = 5e-75
 Identities = 140/294 (47%), Positives = 205/294 (69%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAMHE 694
            +A+D+ +RNI+ P R+ ++ ++ +Y  SV E I+ N EP  Y EA+ S+    W+  MH+
Sbjct: 520  IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSIYSEAIVSDDCNRWITTMHD 579

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW LV  P+    + CKW+FK K   + +D  R+KARLVAKG++Q   +D+
Sbjct: 580  EMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPSIDF 639

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+P+VK +++R +L++ A  ++EL+QMDVKTAFLHG+L+E IYM QP GFV     +
Sbjct: 640  NDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKEN 699

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
             VC LKKSLYGLKQSPR W K+FD  MLS KF+RS+YD+C+Y K      ++LL+YVDDM
Sbjct: 700  LVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDNCVYLKVVDGSAIYLLLYVDDM 759

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +E +K  LS++F+MK LG AK+ILGM I R+R +  ++L+Q  Y+
Sbjct: 760  LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYI 813


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  286 bits (731), Expect = 9e-75
 Identities = 142/294 (48%), Positives = 204/294 (69%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAMHE 694
            +A+D+ +RNI+ P R+ ++  + +Y  SV E I+ N EP TY EA+ S+    W+ AMH+
Sbjct: 750  IAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHD 809

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW LV  P+    + CKW+FK K   + +D  R+KARLVAKG++Q  G+D+
Sbjct: 810  EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 869

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+PVVK +++R +L + A  ++EL+QM+VKTAFLHG+L+E IYM QP GFV     +
Sbjct: 870  NDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKEN 929

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
             VC LKKSLYGLKQSPR W K+FD  MLS KF+ S+YD C+Y K      ++LL+YVDDM
Sbjct: 930  LVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVYLKVVDGSVIYLLLYVDDM 989

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +E +K  LS++F+MK LG AK+ILGM I R+R +  ++L+Q  Y+
Sbjct: 990  LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYI 1043


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  285 bits (728), Expect = 2e-74
 Identities = 140/294 (47%), Positives = 203/294 (69%), Gaps = 5/294 (1%)
 Frame = -3

Query: 867  LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAMHE 694
            +A+D+ +RNI+ P R+ ++ ++ +Y  SV E I+ N EP TY EA+ S+    W+ AMH+
Sbjct: 813  IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 872

Query: 693  EMNSLHVNNTWVLVPKPENCSVVDCKWLFKVK---NENDSVRFKARLVAKGFTQKEGVDY 523
            EM SL  N+TW  V  P+    + CKW+FK K   + +D  R+KARLVAKG++Q  G+D+
Sbjct: 873  EMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 932

Query: 522  TEIFAPVVKFTTVRIMLALTAQFNWELKQMDVKTAFLHGDLDEKIYMRQPIGFVDKKNPD 343
             ++F+P++K +++R +L + A  ++EL+QMDVKTAFLHG+L+E IYM QP GFV     +
Sbjct: 933  NDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKEN 992

Query: 342  FVCLLKKSLYGLKQSPRCWNKKFDDCMLSLKFKRSSYDHCLYFKENAKVPVFLLIYVDDM 163
             VC LKKSLYGLKQSPR W K+FD  MLS KF+RS+YD C+Y K      ++LL+YVDDM
Sbjct: 993  LVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVDGSAIYLLLYVDDM 1052

Query: 162  LLISPCVKTVEHVKNCLSAKFDMKYLGDAKRILGMNIFRDRKNSVIFLNQISYV 1
            L+ +     +  +K  LS++F MK LG AK+ILGM I R+R +  ++L+Q  Y+
Sbjct: 1053 LIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYI 1106