BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000416
         (8657 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            2029   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  2024   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  2017   0.0  
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  2017   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      2006   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      2003   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      2002   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1999   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   960   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   956   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   941   0.0  
gb|AFA43541.1| coat protein [Citrus leaf blotch virus]                692   0.0  
gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271...   691   0.0  
gb|AFA43545.1| coat protein [Citrus leaf blotch virus]                689   0.0  
ref|NP_624335.1| coat protein [Citrus leaf blotch virus] gi|8196...   687   0.0  
gb|AFA43543.1| coat protein [Citrus leaf blotch virus]                687   0.0  
gb|AFA43547.1| coat protein [Citrus leaf blotch virus]                687   0.0  
gb|AFA43544.1| coat protein [Citrus leaf blotch virus]                686   0.0  
gb|AFA43546.1| coat protein [Citrus leaf blotch virus]                686   0.0  
gb|AFA43542.1| coat protein [Citrus leaf blotch virus]                685   0.0  

>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 2029 bits (5256), Expect = 0.0
 Identities = 1062/1995 (53%), Positives = 1353/1995 (67%), Gaps = 54/1995 (2%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN+HFA++++ + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-----------------L 376
            PNGYLPHSHP SK  ENH+L+ VLP V+N  + + CSIKE K                 L
Sbjct: 65   PNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDL 124

Query: 377  NCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSF 550
            N + +  N   + +N +V  +DVSRY E     +F  +       FS    K++   ++ 
Sbjct: 125  NALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAV 182

Query: 551  FFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLFF 730
            FFHDEVHHW K  +F FL   + +R +FTVVYPPE+L  + NSQNPK+Y FK+ + +LFF
Sbjct: 183  FFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFF 242

Query: 731  FPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLF 910
            FPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G+L+T+  LF
Sbjct: 243  FPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLF 302

Query: 911  FNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDV 1090
            F+D++ +DM  +F +RF+ Y++FP++  H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDV
Sbjct: 303  FSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDV 362

Query: 1091 EVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDF 1270
            E+KEFLFFEQ CKR IER TS+G+FGHS  E L    +   P+   R    WK  N F+F
Sbjct: 363  EIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEF 422

Query: 1271 LYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLE 1450
            L+ LGTL + ++R  C+ H++E + FEVV  D + +LDPL  F  NENFNE+RVDDGYLE
Sbjct: 423  LFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLE 482

Query: 1451 RVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-----T 1600
            R++LPF+N    D ++K V  Y+  S +   E   R +  A K P   L+I W       
Sbjct: 483  RIRLPFWNLNDYDLKRKRVNAYNILSYRFEEE---RKIESAQKGPNKMLQIEWYGIKEFK 539

Query: 1601 DDPSFVNFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFDEFLR 1765
             DP   N          +    +D KK+        SY   S + CT +     +  FL 
Sbjct: 540  VDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYLTFL- 583

Query: 1766 PSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSELGIDE 1942
                 C +GLDG + +E LE   +   ++ + D +  L     E       +   LG   
Sbjct: 584  -----CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPLGF-M 635

Query: 1943 REAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPADGNCF 2104
            +E + + P  T+  +E  G   +++     +++Y+ +F    C  +HG  I  P+DGNCF
Sbjct: 636  KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNCF 695

Query: 2105 FHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFALSRG 2278
            F A TE ++  E    +R +FS+WL++ +   Y  L ++I  +GVFME ELIYLF + RG
Sbjct: 696  FSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754

Query: 2279 LKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEGYHDI 2443
            + +++    H ++ ++    G EEGH+   G+HF+  ETY  S + +  LL ++      
Sbjct: 755  VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814

Query: 2444 RLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICDPDSN 2623
             + KF F P+HF C  FRGRKAAF+TKV ADYGHNGM+YP N WVPSL+ I++IC    +
Sbjct: 815  EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874

Query: 2624 YNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFF 2803
            +N ALI +YE  +SLG HRDNE VY D  ILTV   G   F IE   ++  F M   SFF
Sbjct: 875  FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934

Query: 2804 TMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVAGALK 2983
             MP GFQK+ARH V+    RVSITFR HVR ++G  I+  +E    +N CLI A + A+K
Sbjct: 935  LMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREE--NYKNTCLINAFSKAMK 992

Query: 2984 SSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFGQT 3163
             S++ +   L + N  +W  ++    G S+EDC    E L V +++++N +  V+  G  
Sbjct: 993  RSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYVVLGKGAL 1052

Query: 3164 VIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLLPFNA 3334
             I +  + NHFS +     M R+  SHL +K NV+ ++G  E +S        N + F A
Sbjct: 1053 RISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAA 1112

Query: 3335 NGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGK 3514
            N EF ++L  SFL  TTG+ LG+ LDNG K+F    K  +    I T++  + GFAGSGK
Sbjct: 1113 NFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGTDVTMVCGFAGSGK 1170

Query: 3515 SKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELI 3694
            S+ +Q WL   KK +FCVVSPRT L +DW FKL L   +  KV TFE FIK ++S L+LI
Sbjct: 1171 SRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLI 1230

Query: 3695 VIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVN 3874
            VIDE+TLFPNGY+D L+Y+L       +++LLFDPLQARYHN+ D+ ILTF HDVDRL+ 
Sbjct: 1231 VIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIG 1290

Query: 3875 DMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERPFP-D 4045
              NI Y+Y + R+++ +F+RF  D+P   + +   + ++WI +    I     +R  P D
Sbjct: 1291 GQNIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCD 1348

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRA+ R 
Sbjct: 1349 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRF 1408

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            S   + LGG+++F    K  L   I+ GEK+       M++ NLI ++    G  DE+DR
Sbjct: 1409 SLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRDEVDR 1467

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQRI + E E   V I+EP CQTHLYI+EPNF  CYNFD IR K
Sbjct: 1468 EERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREK 1527

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWMAV+KRL+
Sbjct: 1528 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLI 1587

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+Y NFK+   L+F  DQGLLE  +N FE KKL+KS  TIK
Sbjct: 1588 FREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIK 1647

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 1648 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 1707

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 1708 QIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 1767

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRRGQP+
Sbjct: 1768 AHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 1827

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 1828 AFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNR 1887

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKT
Sbjct: 1888 FQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKT 1947

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 1948 KVRDLFLEQSSDEDI 1962


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
            gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
            leaf blotch virus]
          Length = 1962

 Score = 2024 bits (5245), Expect = 0.0
 Identities = 1060/1995 (53%), Positives = 1351/1995 (67%), Gaps = 54/1995 (2%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN+HFA++++ + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-----------------L 376
            PNGYLPHSHP SK  ENH+L+ VLP V+N  + + CSIKE K                 L
Sbjct: 65   PNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDL 124

Query: 377  NCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSF 550
            N + +  N   + +N +V  +DVSRY E     +F  +       FS    K++   ++ 
Sbjct: 125  NALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAV 182

Query: 551  FFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLFF 730
            FFHDEVHHW K  +F FL   + +R +FTVVYPPE+L  + NSQNPK+Y FK+ + +LFF
Sbjct: 183  FFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFF 242

Query: 731  FPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLF 910
            FPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G+L+T+  LF
Sbjct: 243  FPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLF 302

Query: 911  FNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDV 1090
            F+D++ +DM  +F +RF+ Y++FP++  H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDV
Sbjct: 303  FSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDV 362

Query: 1091 EVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDF 1270
            E+KEFLFFEQ CKR IER TS+G+FGHS  E L    +   P+   R    WK  N F+F
Sbjct: 363  EIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEF 422

Query: 1271 LYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLE 1450
            L+ LGTL + ++R  C+ H++E + FEVV  D + +LDPL  F  NENFNE+RVDDGYLE
Sbjct: 423  LFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLE 482

Query: 1451 RVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-----T 1600
            R++LPF+N    D ++K V  Y+  S +   E   R +  A K P   L+I W       
Sbjct: 483  RIRLPFWNLNDYDLKRKRVNAYNILSYRFEEE---RKIESAQKGPNKMLQIEWYGIKEFK 539

Query: 1601 DDPSFVNFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFDEFLR 1765
             DP   N          +    +D KK+        SY   S + CT +     +  FL 
Sbjct: 540  VDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYLTFL- 583

Query: 1766 PSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSELGIDE 1942
                 C +GLDG + +E LE   +   ++ + D +  L     E       +   LG   
Sbjct: 584  -----CAEGLDGFNLEEHLERRLKAAGHDVSDDEEEELTSA--EQAGPIKILADPLGF-M 635

Query: 1943 REAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPADGNCF 2104
            +E + + P  T+  +E  G   +++     +++Y+ +F    C  +HG  I  P+DGNCF
Sbjct: 636  KECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNCF 695

Query: 2105 FHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFALSRG 2278
            F A TE ++  E    +R +FS+WL++ +   Y  L ++I  +GVFME ELIYLF + RG
Sbjct: 696  FSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRG 754

Query: 2279 LKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEGYHDI 2443
            + +++    H ++ ++    G EEGH+   G+HF+  ETY  S + +  LL ++      
Sbjct: 755  VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814

Query: 2444 RLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICDPDSN 2623
             + KF F P+HF C  FRGRKAAF+TKV ADYGHNGM+YP N WVPSL+ I++IC    +
Sbjct: 815  EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDD 874

Query: 2624 YNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFF 2803
            +N ALI +YE  +SLG HRDNE VY D  ILTV   G   F IE   ++  F M   SFF
Sbjct: 875  FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMTAGSFF 934

Query: 2804 TMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVAGALK 2983
             MP GFQK+ARH V+   +RVSITFR HVR ++G  I+  +E    +N CLI A + A+K
Sbjct: 935  LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTCLINAFSKAMK 992

Query: 2984 SSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFGQT 3163
             S++ +   L + N  +W  ++    G S+EDC    E L V +++++N +  V+  G  
Sbjct: 993  RSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGAL 1052

Query: 3164 VIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLLPFNA 3334
             I +    NHFS +     M R+  SHL +K NV+ ++G    +S        N + F A
Sbjct: 1053 RISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGVNKIQFAA 1112

Query: 3335 NGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGK 3514
            N EF ++L  SFL  TTG+ LG+ LDNG K+F    K  +    I  ++  + GFAGSGK
Sbjct: 1113 NFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFAGSGK 1170

Query: 3515 SKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELI 3694
            S+ +Q WL   KK +FCVVSPRT L +DW FKL L   +  KV TFE FIK ++S L+LI
Sbjct: 1171 SRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLI 1230

Query: 3695 VIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVN 3874
            VIDE+TLFPNGY+D L+Y+L       +++LLFDPLQARYHN+ D+ ILTF HDVDRL+ 
Sbjct: 1231 VIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIG 1290

Query: 3875 DMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERPFP-D 4045
              NI Y+Y + R+++ +F+RF  D+P   + +   + ++WI +    I     +R  P D
Sbjct: 1291 GQNIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCD 1348

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRA+ R 
Sbjct: 1349 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRF 1408

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            S   + LGG+++F    K  L   I+ GEK+       M++ NLI ++    G  DE+DR
Sbjct: 1409 SLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRDEVDR 1467

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQR+ + E E   V I+EP CQTHLYI+EPNF  CYNFD IR K
Sbjct: 1468 EERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREK 1527

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWMAV+KRLV
Sbjct: 1528 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLV 1587

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+Y NFK+   L+F  DQGLLE  +N FE KKL+KS  TIK
Sbjct: 1588 FREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIK 1647

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 1648 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 1707

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 1708 QIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 1767

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRRGQP+
Sbjct: 1768 AHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 1827

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 1828 AFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNR 1887

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKT
Sbjct: 1888 FQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKT 1947

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 1948 KVRDLFLEQSSDEDI 1962


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 2017 bits (5225), Expect = 0.0
 Identities = 1056/1995 (52%), Positives = 1348/1995 (67%), Gaps = 54/1995 (2%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN+HFA++++ + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-----------------L 376
            PNGYLPHSHP SK  ENH+L+ VLP V+N  + + CSIKE K                 L
Sbjct: 65   PNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDL 124

Query: 377  NCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSF 550
            N + +  N   + +N +V  +DVSRY E     +F  +       FS    K++   ++ 
Sbjct: 125  NALNSLDNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAV 182

Query: 551  FFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLFF 730
            FFHDEVHHW K  +F FL   + +R +FTVVYPPE+L  + NSQNPK+Y FK+ + +LFF
Sbjct: 183  FFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFF 242

Query: 731  FPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLF 910
            FPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G+L+T+  LF
Sbjct: 243  FPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLF 302

Query: 911  FNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDV 1090
            F+D++ +DM  +F +RF+ Y++FP++  H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDV
Sbjct: 303  FSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDV 362

Query: 1091 EVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDF 1270
            E+KEFLFFEQ CKR IER TS+G+FGHS  E L    +   P+   R    WK  N F+F
Sbjct: 363  EIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEF 422

Query: 1271 LYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLE 1450
            L+ LGTL + ++R  C+ H++E + FEVV  D + +LDPL  F  NENFNE R DDGYLE
Sbjct: 423  LFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLE 482

Query: 1451 RVKLPFFN---YKGDPRKKEVYHFFSKQLHTESHLRALGCATKPPT--LRICWR-----T 1600
            R++LPF+N   Y    R+  VY+  S +   E   R +  A K P   L+I W       
Sbjct: 483  RIRLPFWNLNDYDLKRRRVNVYNILSYRFEEE---RRIESAQKGPNKMLQIEWHGIKEFK 539

Query: 1601 DDPSFVNFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFDEFLR 1765
             DP   N          +    +D KK+        SY   S + CT +     +  FL 
Sbjct: 540  VDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYLTFL- 583

Query: 1766 PSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSELGIDE 1942
                 C +GLDG + +E LE   +   ++ + D +  L     E       +   LG   
Sbjct: 584  -----CAEGLDGFNLEEHLERRLKAAGHDISDDEEEELTSA--EQAGPIKILADPLGF-M 635

Query: 1943 REAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPADGNCF 2104
            +E + + P  T+  +E  G   +++     +++Y+ +F    C  +HG  I  P+DGNCF
Sbjct: 636  KECLEEIPIETEPSLEERGQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNCF 695

Query: 2105 FHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFALSRG 2278
            F A TE ++  E    +R +FS+WL++ +   Y  L ++I  DGVFME ELIYLF + RG
Sbjct: 696  FSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFRG 754

Query: 2279 LKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEGYHDI 2443
            + +++    H ++ ++    G EEGH+   G+HF+  ETY  S + +  LL ++      
Sbjct: 755  VTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE 814

Query: 2444 RLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICDPDSN 2623
             + KF F P+HF C  FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC    +
Sbjct: 815  EITKFRFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874

Query: 2624 YNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFF 2803
            +N ALI +YE  +SLG HRDNE VY D  ILTV   G   F IE   ++  F M   SFF
Sbjct: 875  FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTAGSFF 934

Query: 2804 TMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVAGALK 2983
             MP GFQK+ARH V+   +RVSITFR HVR ++G  I+  +E    +N  LI A + A+K
Sbjct: 935  LMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREE--NYKNTRLIDAFSKAMK 992

Query: 2984 SSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFGQT 3163
             S++ +   L + N  +W  ++    G S+EDC    E L V +++++N +  V+  G  
Sbjct: 993  RSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGAF 1052

Query: 3164 VIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLLPFNA 3334
             I +  + NHFS +     M R+  SHL +K +++ ++G  E +S        N + F A
Sbjct: 1053 RISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNKIQFAA 1112

Query: 3335 NGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGK 3514
            N EF ++L  SFL  TTG+ LG+ LDNG K+F    K  +    I  ++  + GFAGSGK
Sbjct: 1113 NFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTVVCGFAGSGK 1170

Query: 3515 SKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELI 3694
            S+ +Q WL   KK +FCVVSPRT L +DW FKL L   +  KV TFE FIK ++S L+LI
Sbjct: 1171 SRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLI 1230

Query: 3695 VIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVN 3874
            VIDE+TLFPNGY+D L+Y+L       +++LLFDPLQARYHN+ D+ ILTF HDVDRLV 
Sbjct: 1231 VIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLVG 1290

Query: 3875 DMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERPFP-D 4045
              +I Y+Y + R+++ +F+RF  D+P   + +   + ++WI +    I     +R  P D
Sbjct: 1291 GQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCD 1348

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  +  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR++ R 
Sbjct: 1349 VLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRF 1408

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            S   + LGG+++F    K  L   I+ GEK+       M++ NLI ++    G  DE+DR
Sbjct: 1409 SLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRDEVDR 1467

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQRI + E E   V I+EP CQTHLYI+EPNF  CYNFD IR K
Sbjct: 1468 EERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREK 1527

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWMAV+KRLV
Sbjct: 1528 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLV 1587

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+Y NFK+   L+F  DQGLLE  +N FE KKL+KS  TIK
Sbjct: 1588 FREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIK 1647

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 1648 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 1707

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFE+HLMKD
Sbjct: 1708 QIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKD 1767

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRRGQP+
Sbjct: 1768 AHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 1827

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPEL YNR
Sbjct: 1828 AFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELAYNR 1887

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKT
Sbjct: 1888 FQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKT 1947

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 1948 KVRDLFLEQSSDEDI 1962


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 2017 bits (5225), Expect = 0.0
 Identities = 1057/1995 (52%), Positives = 1352/1995 (67%), Gaps = 54/1995 (2%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  IYN A +T++SHSEFRN+HFA++++ + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKK-----------------L 376
            PNGYLPHSHP SK  ENH+L+ VLP V+N  + + CSIKE K                 L
Sbjct: 65   PNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDL 124

Query: 377  NCVVARQN--ITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSF 550
            N + +  N   + +N +V  +DVSRY E     +F  +       FS    K++   ++ 
Sbjct: 125  NALNSLNNSHTSFINRLVASKDVSRYTEE--ADAFFQSKKGGPELFSRNFIKSLENKEAV 182

Query: 551  FFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLFF 730
            FFHDEVHHW K  +F FL   + +R +FTVVYPPE+L  + NSQNPK+Y FK+ + +LFF
Sbjct: 183  FFHDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFF 242

Query: 731  FPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLF 910
            FPDGV +E Y+Q  N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G+L+T+  LF
Sbjct: 243  FPDGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLF 302

Query: 911  FNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDV 1090
            F+D++ +DM  +F +RF+ Y++FP++  H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDV
Sbjct: 303  FSDYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDV 362

Query: 1091 EVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDF 1270
            E+KEFLFFEQ CKR IER TS+G+FGHS  E L    +   P+   R    WK  N F+F
Sbjct: 363  EIKEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEF 422

Query: 1271 LYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYLE 1450
            L+ LGTL + ++R  C+ H++E + FEVV  D + +LDPL  F  NENFNE+RVDDGYLE
Sbjct: 423  LFSLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLE 482

Query: 1451 RVKLPFFNYKG-DPRKKEV--YHFFSKQLHTESHLRALGCATKPPT--LRICWR-----T 1600
            R++LPF+N    D ++K V  Y   S +   E   R +  A K P   L+I W       
Sbjct: 483  RIRLPFWNLNDYDLKRKRVNAYDILSYRFEEE---RKIESAQKGPNKMLQIEWYGIKEFK 539

Query: 1601 DDPSFVNFAR-----AVIPSNEMDDKKHHDAYTRLMSYLVKSGEMCTSAFISQKFDEFLR 1765
             DP   N          +    +D KK+        SY   S + CT +     +  FL 
Sbjct: 540  VDPFISNSITEFTLLEALLGKRIDPKKY--------SY---SKQACTLS----NYLTFL- 583

Query: 1766 PSEYGCDDGLDGEDAKE-LEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITSELGIDE 1942
                 C +GLDG + +E LE   +   ++ + D +  L       ++   +I ++     
Sbjct: 584  -----CAEGLDGFNLEEHLERRLKAAGHDTSDDEEEELTSV---EQTGPIKILADPLSFM 635

Query: 1943 REAVSQSP--TQKGMEGNGPIPSNFQ----KLDYSKMFKEVECHASHGRLINVPADGNCF 2104
             E + + P  T+  +E  G   +++     +++Y+ +F    C  +HG  I  P+DGNCF
Sbjct: 636  NECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPSDGNCF 695

Query: 2105 FHAITEVYQCTEDHVQMRKNFSEWLLDRD--PYHHLGKLIAKDGVFMEHELIYLFALSRG 2278
            F A TE ++  E    +R +FS+WL++ +   Y  L ++I  DG+FME ELIYLF + RG
Sbjct: 696  FSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFRG 754

Query: 2279 LKIVV----HFEDKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRM-NFKLLDNLEGYHDI 2443
            + +++    H ++ ++    G EEGH+   G+HF+  ETY  S + +  LL ++      
Sbjct: 755  VTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFSE 814

Query: 2444 RLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILEICDPDSN 2623
             + KF F P+HF C  FRGRKAAF+TKV ADYGHNGM+YP N WVPSLD I++IC    +
Sbjct: 815  EITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDD 874

Query: 2624 YNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFF 2803
            +N ALI +YE  +SLG HRDNE VY D  ILTV   G   F IE   ++  F M   SFF
Sbjct: 875  FNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFF 934

Query: 2804 TMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIVAVAGALK 2983
             MP GFQK+ARH V+    RVSITFR HVR ++G  I+  +E    +N CLI A + A+K
Sbjct: 935  LMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREE--NYKNTCLIDAFSKAMK 992

Query: 2984 SSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFGQT 3163
             S++ +   L + N  +W  ++    G S+EDC    E L V ++++++ +  V+  G  
Sbjct: 993  RSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVVLGKGAF 1052

Query: 3164 VIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKIS---KCPHYNLLPFNA 3334
             I +  + NHFS +     M R+  SHL +K NV+ ++G  E +S        N + F A
Sbjct: 1053 RISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAA 1112

Query: 3335 NGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGK 3514
            N EF ++L  SFL  TTG+ LG+ LDNG K+F    K  +    I  ++  + GFAGSGK
Sbjct: 1113 NFEFARILANSFLNMTTGICLGKALDNGEKYFLHILK--DRVKQIGIDVTMVCGFAGSGK 1170

Query: 3515 SKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRERSNLELI 3694
            S+ +Q WL   KK +FCVVSPRT L +DW FKL L   +  KV TFE FIK ++S L+LI
Sbjct: 1171 SRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLI 1230

Query: 3695 VIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTHDVDRLVN 3874
            VIDE+TLFPNGY+D L+Y+L       +++LLFDPLQAR+HN+ D+ ILTF HDVDRLV 
Sbjct: 1231 VIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHDVDRLVG 1290

Query: 3875 DMNINYLYGSFRLNKNFFDRFNVDLPMIRRDE--SDSKIWIVNGPEDIKGSFGERPFP-D 4045
              +I Y+Y + R+++ +F+RF  D+P   + +   + ++WI +    I     +R  P D
Sbjct: 1291 GQSIEYIYSTHRMSR-YFNRF-FDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCD 1348

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  +  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TR++ R 
Sbjct: 1349 VLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRF 1408

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            S   + LGG+++F    K  L   I+ GEK+       M++ NLI ++    G  DE+DR
Sbjct: 1409 SLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRRE-KENGCRDEVDR 1467

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQRI + E E   V I+EP CQTHLYI+EPNF  CYNFD IR K
Sbjct: 1468 EERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREK 1527

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWMAV+KRLV
Sbjct: 1528 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWMAVRKRLV 1587

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+Y NFK+   L+F  DQGLLE  +N FE KKL+KS  TIK
Sbjct: 1588 FREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIK 1647

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 1648 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 1707

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIYIHSNKNFDDLN W KKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 1708 QIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 1767

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFTMCRYEWRRGQP+
Sbjct: 1768 AHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 1827

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNL + +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 1828 AFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNR 1887

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQAVVRFIVTHIDKLKT
Sbjct: 1888 FQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKT 1947

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 1948 KVRDLFLEQSSDEDI 1962


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 2006 bits (5196), Expect = 0.0
 Identities = 1049/2003 (52%), Positives = 1328/2003 (66%), Gaps = 62/2003 (3%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN+HFA+A+  + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL----------------- 376
            PNGY+PHSHP SK  ENHIL+ VLP V++  K + CSIKE K+                 
Sbjct: 65   PNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALG 124

Query: 377  ---NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKS 547
                   A  + + +N +V  +D+ RY E E    FS     D   FSN   + +   ++
Sbjct: 125  FCGKDTSASDHTSFINRLVASKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCISNKEA 183

Query: 548  FFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLF 727
             FFHDEVHHW K  +F FL R + RR +FT+VYPPELL  + NSQNPK+Y FK+ + +LF
Sbjct: 184  VFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLF 243

Query: 728  FFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSL 907
            FFPDGV +E Y+Q  N+ WLF   +   GD+ WT+ RH S Y+HHLFE+  G+LI++  +
Sbjct: 244  FFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKI 303

Query: 908  FFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDD 1087
            FF+D+  +DM  +F +RF+ Y++FP+   H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDD
Sbjct: 304  FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDD 363

Query: 1088 VEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFD 1267
            VE+KEFLFFEQ CKR IER TS+G+FG+S  + L    +   P++  R    WK  N F+
Sbjct: 364  VEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFE 423

Query: 1268 FLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYL 1447
            FL+ LGTL ++I+R  C+ HI+E + FEVV  D + +LDPL  F  NENFNEERVDDGYL
Sbjct: 424  FLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYL 483

Query: 1448 ERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW----RT 1600
            +RVKLPF+N K  DP++     +    +  +   ++ LR  G       L+I W      
Sbjct: 484  DRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYGIREF 540

Query: 1601 DDPSFVNFARAVIPSNEMDDKKHH----------DAYTRLMSYL--VKSGEMCTSAFISQ 1744
            DDP   N          +  K+ H          D   + +S++  +  G       + +
Sbjct: 541  DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600

Query: 1745 KFDEFLRPSEYGCDDGLDGEDAKELEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITS 1924
            +     R       +GL G+   E     +  +      I  L+   P  S+  +SQ  +
Sbjct: 601  RLQSAGRDPIESESEGL-GKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRA 659

Query: 1925 ELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLINVPA 2089
            +L ++      +E   +  T    EG+  I     ++D+S +F+   C  +HG  I  P 
Sbjct: 660  DLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIPTPM 716

Query: 2090 DGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELIYLF 2263
            DGNCFF A    + C  D   +R NF++WL   D   Y  +G  I  +GVFME ELIYLF
Sbjct: 717  DGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLF 775

Query: 2264 ALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDNLE- 2428
             + R + +++H      + +F    G EEGH+   G HF+  ETY      F    NL  
Sbjct: 776  CIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPNLSE 833

Query: 2429 ---GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAIL 2599
               GY +  L  F F PEHF C  FRGRK AFLTKV ADYGHNGM+YP N WVPSLD I+
Sbjct: 834  LPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEII 892

Query: 2600 EICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEF 2779
             ICD   ++N ALI +Y   +SLG HRDNE VY D  ILTV  +G   F IE  ++   F
Sbjct: 893  RICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASF 952

Query: 2780 AMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLI 2959
             M   SFF MP GFQ++ARH V     RVSITFR H+R + G  I+  ++    RN CLI
Sbjct: 953  LMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNVCLI 1010

Query: 2960 VAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEI 3139
             A++ AL    + +   L + N  +W  F+    G S+EDC    E L + +++ ++ + 
Sbjct: 1011 RALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKC 1070

Query: 3140 KVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--CPHY 3313
             V+  G   + +  + NHFS + E  ++ R+  SHL KK+N+  + GL E +        
Sbjct: 1071 LVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGV 1130

Query: 3314 NLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTELHCM 3490
            N + F A+ E  ++L  SFL  TTG+ L   LDNG K+F     +SEE    I  ++  +
Sbjct: 1131 NCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDVTAI 1187

Query: 3491 IGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKR 3670
             GFAGSGKS+ +Q WL   K+ +FCVVSPR  L +DW FKL L   +  KV TFESFIK 
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247

Query: 3671 ERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFT 3850
            ++S L++IV+DE+TLFPNGY+D LIY+L    S   ++LLFDPLQARYHN+ D+ +L F 
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307

Query: 3851 HDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIKGSF 4024
            HDVDRL+   ++ Y+Y S R++K +F+RF  D+P   + E+  + ++WI++    I    
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSITSVC 1365

Query: 4025 GERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVA 4201
             ++  P DVLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA
Sbjct: 1366 IDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVA 1425

Query: 4202 WTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMG 4381
             TRAK R+SF  + LGG+D+F       L   I+ G+++       MV+ NLI K     
Sbjct: 1426 LTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQEKKN 1484

Query: 4382 GAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCY 4561
            G  DE+DREERLEGDPFLKPFIF+G RI +   E G + ++EP CQTHLYI+EPNF  CY
Sbjct: 1485 GCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCY 1544

Query: 4562 NFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFW 4741
            NFD IR KE+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFW
Sbjct: 1545 NFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFW 1604

Query: 4742 MAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKL 4921
            MAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGL E  VN FE KKL
Sbjct: 1605 MAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKL 1664

Query: 4922 KKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFA 5101
            +KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFA
Sbjct: 1665 EKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1724

Query: 5102 PWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILS 5281
            PWCRYLE QIR+QLPEEIYIHSNKNFDDLN W K FF +DICVESDYEAFDACQDEYILS
Sbjct: 1725 PWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILS 1784

Query: 5282 FEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRY 5461
            FEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRY
Sbjct: 1785 FEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRY 1844

Query: 5462 EWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVK 5641
            EWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVK
Sbjct: 1845 EWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVK 1904

Query: 5642 EPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIV 5821
            EPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIV
Sbjct: 1905 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIV 1964

Query: 5822 THIDKLKTKVKDLFQEQSSDEDI 5890
            THIDKLKT+VKDLF EQSSDEDI
Sbjct: 1965 THIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 2003 bits (5188), Expect = 0.0
 Identities = 1054/2002 (52%), Positives = 1330/2002 (66%), Gaps = 61/2002 (3%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN+HFA+A+  + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL----------------- 376
            PNGY+PHSHP SK  ENHIL+ VLP V++  K + CSIKE K+                 
Sbjct: 65   PNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALG 124

Query: 377  ---NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKS 547
                   A  + + +N +V  +D+ RY E E    FS     D   FSN   + +   ++
Sbjct: 125  FCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCISNKEA 183

Query: 548  FFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLF 727
             FFHDEVHHW K  +F FL R + RR +FT+VYPPELL  + NSQNPK+Y FK+ + +LF
Sbjct: 184  VFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLF 243

Query: 728  FFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSL 907
            FFPDGV +E Y+Q  N+ WLF   +   GD+ WT+ RH S Y+HHLFE+  G+LI++  +
Sbjct: 244  FFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKI 303

Query: 908  FFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDD 1087
            FF+D+  +DM  +F +RF+ Y++FP+   H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDD
Sbjct: 304  FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDD 363

Query: 1088 VEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFD 1267
            VE+KEFLFFEQ CKR IER TS+G+FG+S  + L    +   P++  R    WK  N F+
Sbjct: 364  VEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFE 423

Query: 1268 FLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYL 1447
            FL+ LGTL ++I+R  C+ HI+E + FEVV  D + +LDPL  F  NENFNEERVDDGYL
Sbjct: 424  FLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYL 483

Query: 1448 ERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW----RT 1600
            +RVKLPF+N K  DP++     +    +  +   ++ LR  G       L+I W      
Sbjct: 484  DRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYGIREF 540

Query: 1601 DDPSFVNFARAVIPSNEMDDKKHHD---AYTRLMSYLVKSGEMCTSAFISQKFDEFL--- 1762
            DDP   N          +  K+ H    +Y++    L K            +  EF+   
Sbjct: 541  DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600

Query: 1763 RPSEYGCD---DGLDGEDAKELEAPTETRSNEFTLD--IDSLLLGCPPESESSDSQITSE 1927
            R    G D     L+G   K  E+  E  +    L+  I  L+   P  S+  +SQ  ++
Sbjct: 601  RLQSAGRDPIESELEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRAD 660

Query: 1928 LGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLINVPAD 2092
            L ++      +E   +  T    EG+  I     ++D+S +F+   C  +HG  I  P D
Sbjct: 661  LEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIPTPMD 717

Query: 2093 GNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELIYLFA 2266
            GNCFF A    + C  D   +R NF++WL   D   Y  +G  I  +GVFME ELIYLF 
Sbjct: 718  GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776

Query: 2267 LSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDNLE-- 2428
            + R + +++H      + +F    G EEGH+   G HF+  ETY      F    NL   
Sbjct: 777  IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPNLSEL 834

Query: 2429 --GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILE 2602
              GY +  L  F F PEHF C  FRGRK AFLTKV ADYGHNGM+YP N WVPSLD I+ 
Sbjct: 835  PCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIR 893

Query: 2603 ICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFA 2782
            ICD   ++N ALI +Y   +SLG HRDNE VY D  ILTV  +G   F IE  ++   F 
Sbjct: 894  ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953

Query: 2783 MEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIV 2962
            M   SFF MP GFQ++ARH V     RVSITFR H+R + G  I+  ++    RN CLI 
Sbjct: 954  MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNVCLIR 1011

Query: 2963 AVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIK 3142
            A++ AL    + +   L + N  +W  F+    G S+EDC    E L + +++ ++ +  
Sbjct: 1012 ALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCL 1071

Query: 3143 VMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--CPHYN 3316
            V+  G   + +  + NHFS + E  ++ R+  SHL KK+N+  + GL E +        N
Sbjct: 1072 VLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVN 1131

Query: 3317 LLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTELHCMI 3493
             + F A+ E  ++L  SFL  TTG+ L   LDNG K+F     +SEE    I  ++  + 
Sbjct: 1132 CVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDVTAIC 1188

Query: 3494 GFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRE 3673
            GFAGSGKS+ +Q WL   K+ +FCVVSPR  L +DW FKL L   +  KV TFESFIK +
Sbjct: 1189 GFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMD 1248

Query: 3674 RSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTH 3853
            +S L++IV+DE+TLFPNGY+D LIY+L    S   ++LLFDPLQARYHN+ D+ +L F H
Sbjct: 1249 KSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEH 1308

Query: 3854 DVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIKGSFG 4027
            DVDRL+   ++ Y+Y S R++K +F+RF  D+P   + E+  + ++WI++    I     
Sbjct: 1309 DVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSITSVCI 1366

Query: 4028 ERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAW 4204
            ++  P DVLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA 
Sbjct: 1367 DQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVAL 1426

Query: 4205 TRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGG 4384
            TRAK R+SF  + LGG+D+F       L   I+ G+++       MV+ NLI K     G
Sbjct: 1427 TRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQEKKNG 1485

Query: 4385 AIDEMDREERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYN 4564
              DE+DREERLEGDPFLKPFIF+G RI +   E G + ++EP CQTHLYI+EPNF  CYN
Sbjct: 1486 CSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYN 1545

Query: 4565 FDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWM 4744
            FD IR KE+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWM
Sbjct: 1546 FDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWM 1605

Query: 4745 AVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLK 4924
            AVKKRLVFR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGL E  VN FE KKL+
Sbjct: 1606 AVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLE 1665

Query: 4925 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAP 5104
            KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAP
Sbjct: 1666 KSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1725

Query: 5105 WCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSF 5284
            WCRYLE QIR+QLPEEIYIHSNKNFDDLN W K FF +DICVESDYEAFD CQDEYILSF
Sbjct: 1726 WCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYILSF 1785

Query: 5285 EIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYE 5464
            EIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYE
Sbjct: 1786 EIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYE 1845

Query: 5465 WRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKE 5644
            WRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKE
Sbjct: 1846 WRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKE 1905

Query: 5645 PELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVT 5824
            PELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVT
Sbjct: 1906 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVT 1965

Query: 5825 HIDKLKTKVKDLFQEQSSDEDI 5890
            HIDKLKT+VKDLF EQSSDEDI
Sbjct: 1966 HIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 2002 bits (5187), Expect = 0.0
 Identities = 1048/2003 (52%), Positives = 1327/2003 (66%), Gaps = 62/2003 (3%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN+HFA+A+  + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL----------------- 376
            PNGY+PHSHP SK  ENHIL+ VLP V++  K + CSIKE K+                 
Sbjct: 65   PNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALG 124

Query: 377  ---NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKS 547
                   A  + + +N +V  +D+ RY E E    FS     D   FSN   + +   ++
Sbjct: 125  FCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCISNKEA 183

Query: 548  FFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLF 727
             FFHDEVHHW K  +F FL R + RR +FT+VYPPELL  + NSQNPK+Y FK+ + +LF
Sbjct: 184  VFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLF 243

Query: 728  FFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSL 907
            FFPDGV +E Y+Q  N+ WLF   +   GD+ WT+ RH S Y+HHLFE+  G+LI++  +
Sbjct: 244  FFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKI 303

Query: 908  FFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDD 1087
            FF+D+  +DM  +F +RF+ Y++FP+   H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDD
Sbjct: 304  FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDD 363

Query: 1088 VEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFD 1267
            VE+KEFLFFEQ CKR IER TS+G+FG+S  + L    +   P++  R    WK  N F+
Sbjct: 364  VEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFE 423

Query: 1268 FLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYL 1447
            FL+ LGTL ++I+R  C+ HI+E + FEVV  D + +LDPL  F  NENFNEERVDDGYL
Sbjct: 424  FLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYL 483

Query: 1448 ERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW----RT 1600
            +RVKLPF+N K  DP++     +    +  +   ++ LR  G       L+I W      
Sbjct: 484  DRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYGIREF 540

Query: 1601 DDPSFVNFARAVIPSNEMDDKKHH----------DAYTRLMSYL--VKSGEMCTSAFISQ 1744
            DDP   N          +  K+ H          D   + +S++  +  G       + +
Sbjct: 541  DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600

Query: 1745 KFDEFLRPSEYGCDDGLDGEDAKELEAPTETRSNEFTLDIDSLLLGCPPESESSDSQITS 1924
            +     R       +GL G+   E     +  +      I  L+   P  S+  +SQ  +
Sbjct: 601  RLQSAGRDPIESESEGL-GKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRA 659

Query: 1925 ELGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLINVPA 2089
            +L ++      +E   +  T    EG+  I     ++D+S +F+   C  +HG  I  P 
Sbjct: 660  DLEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIPTPM 716

Query: 2090 DGNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELIYLF 2263
            DGNCFF A    + C  D   +R NF++WL   D   Y  +G  I  +GVFME ELIYLF
Sbjct: 717  DGNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLF 775

Query: 2264 ALSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDNLE- 2428
             + R + +++H      + +F    G EEGH+   G HF+  ETY      F    NL  
Sbjct: 776  CIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPNLSE 833

Query: 2429 ---GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAIL 2599
               GY +  L  F F PEHF C  FRGRK AFLTKV ADYGHNGM+YP N WVPSLD I+
Sbjct: 834  LPCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEII 892

Query: 2600 EICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEF 2779
             ICD   ++N ALI +Y   +SLG HRDNE VY D  ILTV  +G   F IE  ++   F
Sbjct: 893  RICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASF 952

Query: 2780 AMEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLI 2959
             M   SFF MP GFQ++ARH V     RVSITFR H+R + G  I+  ++    RN CLI
Sbjct: 953  LMTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNVCLI 1010

Query: 2960 VAVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEI 3139
             A++ AL    + +   L + N  +W  F+    G S+EDC    E L + +++ ++ + 
Sbjct: 1011 RALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKC 1070

Query: 3140 KVMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--CPHY 3313
             V+  G   + +  + NHFS + E  ++ R+  SHL KK+N+  + GL E +        
Sbjct: 1071 LVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGV 1130

Query: 3314 NLLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTELHCM 3490
            N + F A+ E  ++L  SFL  TTG+ L   LDNG K+F     +SEE    I  ++  +
Sbjct: 1131 NCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDVTAI 1187

Query: 3491 IGFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKR 3670
             GFAGSGKS+ +Q WL   K+ +FCVVSPR  L +DW FKL L   +  KV TFESFIK 
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247

Query: 3671 ERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFT 3850
            ++S L++IV+DE+TLFPNGY+D LIY+L    S   ++LLFDPLQARYHN+ D+ +L F 
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307

Query: 3851 HDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIKGSF 4024
            HDVDRL+   ++ Y+Y S R++K +F+RF  D+P   + E+  + ++WI++    I    
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSITSVC 1365

Query: 4025 GERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVA 4201
             ++  P DVLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA
Sbjct: 1366 IDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVA 1425

Query: 4202 WTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMG 4381
             TRAK R+SF  + LGG+D+F       L   I+ G+++       MV+ NLI K     
Sbjct: 1426 LTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLI-KQEKKN 1484

Query: 4382 GAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCY 4561
            G  DE+DREERLEGDPFLKPFIF+GQRI +   E G + ++EP CQTHLYI+EPNF  CY
Sbjct: 1485 GCSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCY 1544

Query: 4562 NFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFW 4741
            NFD IR KE+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFW
Sbjct: 1545 NFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFW 1604

Query: 4742 MAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKL 4921
            MAVKKRLVFR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGL E  VN FE KKL
Sbjct: 1605 MAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKL 1664

Query: 4922 KKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFA 5101
            +KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFA
Sbjct: 1665 EKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFA 1724

Query: 5102 PWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILS 5281
            PWCRYLE QIR+QLPEEIYIHSNKNFDDL  W K FF +DICVESDYEAFD CQDEYILS
Sbjct: 1725 PWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILS 1784

Query: 5282 FEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRY 5461
            FEIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRY
Sbjct: 1785 FEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRY 1844

Query: 5462 EWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVK 5641
            EWRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVK
Sbjct: 1845 EWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVK 1904

Query: 5642 EPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIV 5821
            EPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIV
Sbjct: 1905 EPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIV 1964

Query: 5822 THIDKLKTKVKDLFQEQSSDEDI 5890
            THIDKLKT+VKDLF EQSSDEDI
Sbjct: 1965 THIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1999 bits (5180), Expect = 0.0
 Identities = 1053/2002 (52%), Positives = 1329/2002 (66%), Gaps = 61/2002 (3%)
 Frame = +2

Query: 68   SNKTAIECMLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSSIGVELF 247
            SNKTAIE +LGNFEK  +  +YN A +T++SHSEFRN+HFA+A+  + KK  S +G+EL+
Sbjct: 5    SNKTAIESILGNFEKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELY 64

Query: 248  PNGYLPHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKL----------------- 376
            PNGY+PHSHP SK  ENHIL+ VLP V++  K + CSIKE K+                 
Sbjct: 65   PNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALG 124

Query: 377  ---NCVVARQNITLLNEIVEGRDVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKS 547
                   A  + + +N +V  +D+ RY E E    FS     D   FSN   + +   ++
Sbjct: 125  FCGKDTSASDHTSFVNRLVAPKDIRRYTE-EADAFFSSKKKNDPELFSNNFIRCISNKEA 183

Query: 548  FFFHDEVHHWGKKNLFKFLNRFQPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVRDKLF 727
             FFHDEVHHW K  +F FL R + RR +FT+VYPPELL  + NSQNPK+Y FK+ + +LF
Sbjct: 184  VFFHDEVHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLF 243

Query: 728  FFPDGVSSEGYQQPANLFWLFKNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSL 907
            FFPDGV +E Y+Q  N+ WLF   +   GD+ WT+ RH S Y+HHLFE+  G+LI++  +
Sbjct: 244  FFPDGVKTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKI 303

Query: 908  FFNDFDVVDMHHMFKNRFKRYDLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDD 1087
            FF+D+  +DM  +F +RF+ Y++FP+   H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDD
Sbjct: 304  FFSDYGSIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDD 363

Query: 1088 VEVKEFLFFEQLCKRFIERGTSYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFD 1267
            VE+KEFLFFEQ CKR IER TS+G+FG+S  + L    +   P++  R    WK  N F+
Sbjct: 364  VEIKEFLFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFE 423

Query: 1268 FLYDLGTLCIQIDRGTCYSHIIETFPFEVVPLDSSVFLDPLPFFDSNENFNEERVDDGYL 1447
            FL+ LGTL ++I+R  C+ HI+E + FEVV  D + +LDPL  F  NENFNEERVDDGYL
Sbjct: 424  FLFSLGTLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYL 483

Query: 1448 ERVKLPFFNYKG-DPRKKEVYHF----FSKQLHTESHLRALGCATKPPTLRICW----RT 1600
            +RVKLPF+N K  DP++     +    +  +   ++ LR  G       L+I W      
Sbjct: 484  DRVKLPFWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERG---PHKMLQIEWYGIREF 540

Query: 1601 DDPSFVNFARAVIPSNEMDDKKHHD---AYTRLMSYLVKSGEMCTSAFISQKFDEFL--- 1762
            DDP   N          +  K+ H    +Y++    L K            +  EF+   
Sbjct: 541  DDPFIANGISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLER 600

Query: 1763 RPSEYGCD---DGLDGEDAKELEAPTETRSNEFTLD--IDSLLLGCPPESESSDSQITSE 1927
            R    G D     L+G   K  E+  E  +    L+  I  L+   P  S+  +SQ  ++
Sbjct: 601  RLQSAGRDPIESELEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRAD 660

Query: 1928 LGIDE-----REAVSQSPTQKGMEGNGPIPSNFQKLDYSKMFKEVECHASHGRLINVPAD 2092
            L ++      +E   +  T    EG+  I     ++D+S +F+   C  +HG  I  P D
Sbjct: 661  LEVESEGEIGKEESFEEGTLSCAEGHEAIKF---EIDFSDIFRPHNCMNTHGYEIPTPMD 717

Query: 2093 GNCFFHAITEVYQCTEDHVQMRKNFSEWL--LDRDPYHHLGKLIAKDGVFMEHELIYLFA 2266
            GNCFF A    + C  D   +R NF++WL   D   Y  +G  I  +GVFME ELIYLF 
Sbjct: 718  GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776

Query: 2267 LSRGLKIVVHFE----DKIFQFGEGEEEGHIHCDGHHFMAYETYTFSRMNFKLLDNLE-- 2428
            + R + +++H      + +F    G EEGH+   G HF+  ETY      F    NL   
Sbjct: 777  IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRID--GFASDPNLSEL 834

Query: 2429 --GYHDIRLEKFSFAPEHFVCHSFRGRKAAFLTKVGADYGHNGMLYPVNDWVPSLDAILE 2602
              GY +  L  F F PEHF C  FRGRK AFLTKV ADYGHNGM+YP N WVPSLD I+ 
Sbjct: 835  PCGYSE-ELRNFHFKPEHFNCAQFRGRKGAFLTKVDADYGHNGMVYPHNAWVPSLDEIIR 893

Query: 2603 ICDPDSNYNSALIQWYEEGASLGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFA 2782
            ICD   ++N ALI +Y   +SLG HRDNE VY D  ILTV  +G   F IE  ++   F 
Sbjct: 894  ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953

Query: 2783 MEDASFFTMPSGFQKRARHGVTATKNRVSITFRTHVRMMSGKAISESKELKKKRNKCLIV 2962
            M   SFF MP GFQ++ARH V     RVSITFR H+R + G  I+  ++    RN CLI 
Sbjct: 954  MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIAIRQD--NYRNVCLIR 1011

Query: 2963 AVAGALKSSEEKVCQALISANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIK 3142
            A++ AL    + +   L + N  +W  F+    G S+EDC    E L + +++ ++ +  
Sbjct: 1012 ALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCL 1071

Query: 3143 VMDFGQTVIKIKFEANHFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISK--CPHYN 3316
            V+  G   + +  + NHFS + E  ++ R+  SHL KK+N+  + GL E +        N
Sbjct: 1072 VLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVN 1131

Query: 3317 LLPFNANGEFFQMLRKSFLQRTTGVVLGEVLDNGAKFFERSFKLSEEC-SNISTELHCMI 3493
             + F A+ E  ++L  SFL  TTG+ L   LDNG K+F     +SEE    I  ++  + 
Sbjct: 1132 CVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF---LHMSEERPKQIGFDVTAIC 1188

Query: 3494 GFAGSGKSKVMQDWLGKVKKSSFCVVSPRTVLTSDWIFKLGLSGRDGNKVCTFESFIKRE 3673
            GFAGSGKS+ +Q WL   K+ +FCVVSPR  L +DW FKL L   +  KV TFESFIK +
Sbjct: 1189 GFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMD 1248

Query: 3674 RSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNEKDKDILTFTH 3853
            +S L++IV+DE+TLFPNGY+D LIY+L    S   ++LLFDPLQARYHN+ D+ +L F H
Sbjct: 1249 KSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEH 1308

Query: 3854 DVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDES--DSKIWIVNGPEDIKGSFG 4027
            DVDRL+   ++ Y+Y S R++K +F+RF  D+P   + E+  + ++WI++    I     
Sbjct: 1309 DVDRLIGGQDLRYIYSSHRMSK-YFNRF-FDVPCFNQAETTKEQRLWILDDVYSITSVCI 1366

Query: 4028 ERPFP-DVLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAW 4204
            ++  P DVLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA 
Sbjct: 1367 DQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVAL 1426

Query: 4205 TRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGG 4384
            TRAK R+SF  + LGG+D+F       L   I+ G+++       MV+ NLI K     G
Sbjct: 1427 TRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-KQEKKNG 1485

Query: 4385 AIDEMDREERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYN 4564
              DE+DREERLEGDPFLKPFIF+G RI +   E G + ++EP CQTHLYI+EPNF  CYN
Sbjct: 1486 CSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYN 1545

Query: 4565 FDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWM 4744
            FD IR KE+REYREDMLVT+QFCD+Y+K        T GPLRFKAIYPKHS DD+MTFWM
Sbjct: 1546 FDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADDDMTFWM 1605

Query: 4745 AVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLK 4924
            AVKKRLVFR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGL E  VN FE KKL+
Sbjct: 1606 AVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLE 1665

Query: 4925 KSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAP 5104
            KS  TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAP
Sbjct: 1666 KSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAP 1725

Query: 5105 WCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSF 5284
            WCRYLE QIR+QLPEEIYIHSNKNFDDL  W K FF +DICVESDYEAFD CQDEYILSF
Sbjct: 1726 WCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSF 1785

Query: 5285 EIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYE 5464
            EIHLMKDA  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYE
Sbjct: 1786 EIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYE 1845

Query: 5465 WRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKE 5644
            WRRGQP+AFAGDDMCALNNLP+ +DF+++F+ ISLKAKVERTE PMFCGWRLTPYGIVKE
Sbjct: 1846 WRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKE 1905

Query: 5645 PELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVT 5824
            PELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVT
Sbjct: 1906 PELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVT 1965

Query: 5825 HIDKLKTKVKDLFQEQSSDEDI 5890
            HIDKLKT+VKDLF EQSSDEDI
Sbjct: 1966 HIDKLKTRVKDLFLEQSSDEDI 1987


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  960 bits (2481), Expect = 0.0
 Identities = 469/615 (76%), Positives = 524/615 (85%)
 Frame = +2

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            SF  + LGG+DDF       L   I+ GEK+       MV+ NLI K     G  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQRI + + +   V I+EPRCQTHLYI+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GP+RFKAIYPKHS DD+MTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGLLE  +N FE KKL+KS+ TIK
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIK 299

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIY+HSNKNFDDLN+W KKFF RDI VESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQP+
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNLP+ + F+++F+ +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  956 bits (2471), Expect = 0.0
 Identities = 467/615 (75%), Positives = 523/615 (85%)
 Frame = +2

Query: 4046 VLLVDSQVEKEMYNRQIRTITFGESQGLTFNHVCIVLSESTASSNELRWNVAWTRAKERV 4225
            VLLV+S +EK+ ++  I  +TFGESQGLTFNHVCI+LSES+A+SNE RW VA TRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 4226 SFLVSHLGGLDDFLTNCKAELPRRIMNGEKLDHAFYRKMVRSNLIFKDLVMGGAIDEMDR 4405
            SF  + LGG+DDF       L   I+ GEK+       MV+ NLI K     G  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119

Query: 4406 EERLEGDPFLKPFIFIGQRINEQEIECGTVSIQEPRCQTHLYISEPNFAQCYNFDLIRLK 4585
            EERLEGDPFLKPFIF+GQRI + + +   V I+EPRCQTHLYI+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4586 EEREYREDMLVTDQFCDNYNKKGPKCNASTVGPLRFKAIYPKHSHDDEMTFWMAVKKRLV 4765
            E+REYREDMLVT+QFCD+Y+K        T GP+RFKAIYPKHS DD+MTFWMAVKKRL+
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239

Query: 4766 FRSEDENRRRLSDAHLIGGLIYRNFKRSFDLKFVHDQGLLERCVNDFEVKKLKKSQATIK 4945
            FR E+EN +RLS AHL+GGL+YRNFK    L+F  DQGLLE  +N FE KKL+KS+ TI+
Sbjct: 240  FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIR 299

Query: 4946 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEQ 5125
            SHSIRSD+DWALNDVFLFMKSQL TK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE 
Sbjct: 300  SHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359

Query: 5126 QIRDQLPEEIYIHSNKNFDDLNEWTKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 5305
            QIR+QLPEEIY+HSNKNFDDLN+W KKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360  QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 419

Query: 5306 AGLPDALIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPV 5485
            A  P  +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQP+
Sbjct: 420  ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479

Query: 5486 AFAGDDMCALNNLPLRYDFEEVFKRISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 5665
            AFAGDDMCALNNLP+ + F+++F+ +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480  AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539

Query: 5666 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 5845
            FQVAIEEGKVMECLENYAIEVSYAY+LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540  FQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599

Query: 5846 KVKDLFQEQSSDEDI 5890
            KV+DLF EQSSDEDI
Sbjct: 600  KVRDLFLEQSSDEDI 614


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus] gi|571026291|emb|CDF66416.2|
            replication-associated polyprotein [Apricot vein clearing
            associated virus]
          Length = 1679

 Score =  941 bits (2432), Expect = 0.0
 Identities = 534/1184 (45%), Positives = 715/1184 (60%), Gaps = 52/1184 (4%)
 Frame = +2

Query: 2489 SFRGRKAAFLTKVGA-DYGHNGMLYPVNDWVPSLDAILEICDPDSNYNSALIQWYEEGAS 2665
            SFRGR + F  +    DYGHNG  Y   +W   LD   +    D  +N+ L+Q Y++G+ 
Sbjct: 510  SFRGRSSFFFARSNEIDYGHNGFKYRTENWFAELD---DFIPSDLIFNACLVQVYDKGSK 566

Query: 2666 LGLHRDNEVVYGDTSILTVNLKGSCNFRIEVDKRIVEFAMEDASFFTMPSGFQKRARHGV 2845
            +G H+DNE  Y    ILTVN  G   F  +  +    F + D     +   + ++ RH V
Sbjct: 567  IGFHKDNEQCYAGYPILTVNF-GLALFEFDSGEA---FNLTDGDTILLSGDYLRKKRHRV 622

Query: 2846 TA-TKNRVSITFRTHVRMMSGKAISE-SKELKKKRNKCLIVAVAGALKSSEEKVCQALIS 3019
            T+ + +R+S+TFR HV  M+   +   S   K  +NKC+I AVA AL  +   V   ++ 
Sbjct: 623  TSLSDSRISLTFRRHVCRMNKSPLEFFSNNGKLGKNKCIIHAVAMALGQTSNTVANKIV- 681

Query: 3020 ANKSYWLNFIQSDAGASLEDCNELAECLKVNLEVHMNDEIKVMDFG-QTVIKIKFEA--N 3190
            A +   L  +  D     +    +   + ++  +   DE + M+   + +IK  F     
Sbjct: 682  AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVLDE 741

Query: 3191 HFSALREFINMPRSSFSHLQKKANVSAVKGLVEKISKCPHYNLLPFNANGEFFQMLRKSF 3370
            H   L +  N        +    +++           C +  ++ + A+ E    L  SF
Sbjct: 742  HMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMNSF 801

Query: 3371 LQRTTGVVLGEVLDNGAKFFERSFKLSEECSNISTELHCMIGFAGSGKSKVMQD------ 3532
            L  TTG VL E++  G++FF     ++E  S+   EL  + GFAGSGKS  + +      
Sbjct: 802  LAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKRIS 861

Query: 3533 ---WLGKVKKS--------------------SFCVVSPRTVLTSDWIFKLGLSGRDGNKV 3643
                L K KK                     S C++SPR  L  DW  KLG S  +   V
Sbjct: 862  REIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHCSV 921

Query: 3644 CTFESFIKRERSNLELIVIDEVTLFPNGYIDWLIYDLQASKSKAEVVLLFDPLQARYHNE 3823
             TFE   K   S ++LIV+DE+TLFPNGYID LI+ ++      +++L+FDPLQARY + 
Sbjct: 922  TTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYDSA 981

Query: 3824 KDKDILTFTHDVDRLVNDMNINYLYGSFRLNKNFFDRFNVDLPMIRRDESDSKIWIVNGP 4003
            +D+ IL   HDVD ++ D  ++Y+Y S R      + FN+    ++++E D++       
Sbjct: 982  QDRAILGSEHDVDLILGDSEVDYMYQSKRFESE--ELFNL-FEDLKKNEVDAE-----SR 1033

Query: 4004 EDIKGS-FGERPFP----------------DVLLVDSQVEKEMYNRQIRTITFGESQGLT 4132
            E  KG+ F  R +                 DVLLV S  E  ++   I+T+TFGESQGLT
Sbjct: 1034 ETGKGAKFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLT 1093

Query: 4133 FNHVCIVLSESTASSNELRWNVAWTRAKERVSFLVSHLGGLDDFLTNCKAELPRRIMNGE 4312
             +H  I+LSE++A S++ RW VA TRA+++V+FL  HL GL+ FL+  +  L   ++N  
Sbjct: 1094 VDHAAILLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKG 1153

Query: 4313 KLDHAFYRKMVRSNLIFKDLVMGGAIDEMDREERLEGDPFLKPFIFIGQRINEQEIECGT 4492
             +       MVR+ L +         DE+DRE+RLEGD FLK  IF+GQR    E E   
Sbjct: 1154 LVTKKRLSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVE 1213

Query: 4493 VSIQEPRCQTHLYISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDNYNKKGPKCNAS 4672
              + +   +TH ++ + NFAQCYNFD IR KE RE+R    VT+QF DNY          
Sbjct: 1214 PVMAKEDMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKH 1273

Query: 4673 TVGPLRFKAIYPKHSHDDEMTFWMAVKKRLVFRSEDENRRRLSDAHLIGGLIYRNFKRSF 4852
            T GPLRF+AIYP+H  DD++TF MAV KRL F +E + R +L  AH  G +++ N  +  
Sbjct: 1274 TAGPLRFEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKL 1333

Query: 4853 DLKFVHDQGLLERCVNDFEVKKLKKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEK 5032
             L F  D  L E CVNDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EK
Sbjct: 1334 GLNFTWDNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEK 1393

Query: 5033 QFVDAKAGQTLACFQHLILVQFAPWCRYLEQQIRDQLPEEIYIHSNKNFDDLNEWTKKFF 5212
            Q+VDAKAGQTLACFQH+ILV FAP+CRY+E+Q+R QLP EIYIHSNKNF+DLNEW KK  
Sbjct: 1394 QYVDAKAGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHA 1453

Query: 5213 MRDICVESDYEAFDACQDEYILSFEIHLMKDAGLPDALIDAYIDLKCKLSCKLGHFAVMR 5392
              D+CVESDYEAFDA QD+YILSFE+ +M+   +P+ +I AYIDLK  L CKLGHFA+MR
Sbjct: 1454 GDDLCVESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMR 1513

Query: 5393 FTGEFCTFLFNTLANMAFTMCRYEWRRGQPVAFAGDDMCALNNLPLRYDFEEVFKRISLK 5572
            FTGEF TFLFNTLANMAFTMCRYEW  G P+AFAGDDMCAL NL +   F  VF++ISLK
Sbjct: 1514 FTGEFSTFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLK 1573

Query: 5573 AKVERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSE 5752
            AK + TE PMFCGWRL+ +GIVKEPELVYNRF VA+E G V +CLENYAIEVSYAY+L E
Sbjct: 1574 AKTQITEVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGE 1633

Query: 5753 RLYEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQSSDE 5884
            RL+++LK E Q++YHQAVVRFIV H+  L+TKVKDLF EQS+++
Sbjct: 1634 RLFDILKREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  281 bits (718), Expect = 5e-72
 Identities = 162/405 (40%), Positives = 230/405 (56%), Gaps = 7/405 (1%)
 Frame = +2

Query: 92   MLGNFEKADIKRIYNPAVETLVSHSEFRNRHFAFAMDPFLKKKLSS---IGVELFPNGYL 262
            +LG+F +  ++ IYN   E        R   F    +   KK  S    +GV L P  YL
Sbjct: 12   LLGSFPQKHVEIIYNLQFERFKKICICRFCIFLTHSEKNQKKVASIRGWLGVPLHPTPYL 71

Query: 263  PHSHPFSKTLENHILYVVLPSVINNDKFLFCSIKEKKLNCVVARQNITLL---NEIVEGR 433
             HSHPFSK LENHIL  VLP  I    ++F SIK  K+  +  +   ++L   N ++  +
Sbjct: 72   AHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLKTINRLLCAK 130

Query: 434  DVSRYKEVEFVHSFSFNSNLDNYRFSNQAFKTMGKHKSFFFHDEVHHWGKKNLFKFLNRF 613
            D  RY +V+   S   + + +      + F    K ++   HDEVHHW   ++  FL+R 
Sbjct: 131  DFGRY-DVDTDSSVIRSISREAPDILPEPFVRAVKGRNVMIHDEVHHWTLDDMLGFLDRA 189

Query: 614  QPRRMVFTVVYPPELLGGYNNSQNPKMYTFKIVR-DKLFFFPDGVSSEGYQQPANLFWLF 790
            +P R VF+VVYP ELL G   SQNPKMY F+  + DK+ FFPDG +SEGY+Q ANL WLF
Sbjct: 190  RPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPDGRASEGYEQRANLRWLF 249

Query: 791  KNKYLVDGDRCWTIVRHTSKYAHHLFEIVPGKLITEDSLFFNDFDVVDMHHMFKNRFKRY 970
               +       WT+ R  S Y+HHLFE+VPG   T++  FFNDF+ +D+  +FK+RF   
Sbjct: 250  CASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIFKSRFLCR 309

Query: 971  DLFPVNYHHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCKRFIERGT 1150
            D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++V+  +FF  L  R +    
Sbjct: 310  DFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVHRILNESE 369

Query: 1151 SYGMFGHSLLEVLFGKFIKFCPDIFVRWTKTWKCSNIFDFLYDLG 1285
             + +F  S++     KF+ F PD  +    TWK  N   F+  LG
Sbjct: 370  CFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGN---FIKKLG 411


>gb|AFA43541.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  692 bits (1787), Expect = 0.0
 Identities = 346/364 (95%), Positives = 355/364 (97%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL+NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            LIEM
Sbjct: 360  LIEM 363


>gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271897|gb|AFA43540.1|
            coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  691 bits (1782), Expect = 0.0
 Identities = 346/364 (95%), Positives = 354/364 (97%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            LIEM
Sbjct: 360  LIEM 363


>gb|AFA43545.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  689 bits (1777), Expect = 0.0
 Identities = 344/364 (94%), Positives = 354/364 (97%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHL+RVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLRRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>ref|NP_624335.1| coat protein [Citrus leaf blotch virus]
            gi|81964039|sp|Q91QZ1.1|CAPSD_CLBVS RecName: Full=Capsid
            protein; Short=CP; AltName: Full=Coat protein
            gi|14270251|emb|CAC39424.1| coat protein [Citrus leaf
            blotch virus]
          Length = 363

 Score =  687 bits (1774), Expect = 0.0
 Identities = 342/364 (93%), Positives = 352/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNA TINYWLAIVEPFLTSDEDRNSDDII+KFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNAATINYWLAIVEPFLTSDEDRNSDDIIRKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL+NKLKDISQ+YASQ+EITADRE QLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQLEITADREQQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            SL KKKGHEQPLTGSGSSEP H E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSD+A
Sbjct: 121  SL-KKKGHEQPLTGSGSSEPVHAESAHAPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDIA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYNRG+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNRGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>gb|AFA43543.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  687 bits (1774), Expect = 0.0
 Identities = 344/364 (94%), Positives = 353/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQ YIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQLYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>gb|AFA43547.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  687 bits (1773), Expect = 0.0
 Identities = 342/364 (93%), Positives = 353/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKK++ELNESLKAAILAGAE EDL+NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKIEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGK HMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKGHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSV LIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVGLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>gb|AFA43544.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  686 bits (1771), Expect = 0.0
 Identities = 343/364 (94%), Positives = 353/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSD +RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDVERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL+NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDK PYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKGPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>gb|AFA43546.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  686 bits (1769), Expect = 0.0
 Identities = 343/364 (94%), Positives = 353/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL+NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGSGSSEPAH E  H PQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRSTSDKDPYDGIIKISGKSHM KDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMGKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEAD SVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADVSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363


>gb|AFA43542.1| coat protein [Citrus leaf blotch virus]
          Length = 363

 Score =  685 bits (1767), Expect = 0.0
 Identities = 342/364 (93%), Positives = 352/364 (96%)
 Frame = +1

Query: 7045 MKITNDNATTINYWLAIVEPFLTSDEDRNSDDIIQKFRAVVAEHGDTEEVDPEVFFTIFA 7224
            MKITNDNATTINYWLAIVEPFLTSDE+RNSDDIIQKFRAVVAEHGDTEEVDPEVFF IF+
Sbjct: 1    MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60

Query: 7225 ILATKYGRVYSKKVDELNESLKAAILAGAEVEDLKNKLKDISQKYASQIEITADRELQLE 7404
            ILATKYGRVYSKKV+ELNESLKAAILAGAE EDL+NKLKDISQ+YASQIEITADRELQLE
Sbjct: 61   ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120

Query: 7405 SLRKKKGHEQPLTGSGSSEPAHTELVHIPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVA 7584
            +LRKK GHEQPLTGS SSEPAH E  H PQLHVVND QQFYIPFNEYPSLTQSIGTSDVA
Sbjct: 121  NLRKK-GHEQPLTGSVSSEPAHNEPAHTPQLHVVNDFQQFYIPFNEYPSLTQSIGTSDVA 179

Query: 7585 NDEHLKRVQLTLKITDTKVFSRTGFEFTISCGSRSTSDKDPYDGIIKISGKSHMRKDIAY 7764
            NDEHLKRVQLTLKITDTKVFSRTGFEF ISCGSRS SDKDPYDGIIKISGKSHMRKDIAY
Sbjct: 180  NDEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSASDKDPYDGIIKISGKSHMRKDIAY 239

Query: 7765 AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 7944
            AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI
Sbjct: 240  AIRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAI 299

Query: 7945 PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNVKTAGHVTSSPLYNRGNSYESKSKAK 8124
            PTEADGSVRLIRPPTNEENEANSAMRYADIYEQN KTAGHVTSSPLYN+G+SYESK+KAK
Sbjct: 300  PTEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAK 359

Query: 8125 LIEM 8136
            L+EM
Sbjct: 360  LLEM 363