BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000094
         (8561 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]            1833   0.0  
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus...  1833   0.0  
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc...  1829   0.0  
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc...  1825   0.0  
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]      1803   0.0  
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]      1802   0.0  
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]      1801   0.0  
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]      1798   0.0  
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc...   946   0.0  
ref|YP_008997790.1| replication-associated polyprotein [Apricot ...   944   0.0  
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc...   942   0.0  
gb|AGK63259.1| replicase [Cherry mottle leaf virus]                   665   0.0  
ref|NP_062428.1| replicase [Cherry mottle leaf virus] gi|9294781...   662   0.0  
ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf ...   655   0.0  
gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus]       649   0.0  
ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi...   646   0.0  
sp|P54891.1|RDRP_ACLSA RecName: Full=RNA-directed RNA polymerase...   641   e-180
dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]      638   e-179
ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus] gi|...   635   e-178
gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus]           634   e-178

>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
          Length = 1962

 Score = 1833 bits (4748), Expect = 0.0
 Identities = 976/1863 (52%), Positives = 1249/1863 (67%), Gaps = 29/1863 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+HHW+K  
Sbjct: 138  INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 196  MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ +DM  IF
Sbjct: 256  LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 316  LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGTL ++VER
Sbjct: 376  RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF+N +  D
Sbjct: 436  KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495

Query: 1229 PRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSKAVFPCEE 1390
             ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S   F   E
Sbjct: 496  LKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLLE 555

Query: 1391 GIENGKHFDAYASTLKRLVKEGEMCT-NAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSF 1567
             +  GK  D      K+     + CT + Y+  +  E L+   +  EE +E   L A   
Sbjct: 556  ALL-GKRIDP-----KKYSYSKQACTLSNYLTFLCAEGLDG--FNLEEHLERR-LKAAGH 606

Query: 1568 DVNELVDGVDHDKKNGLKDAGP----NPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHG 1735
            D+++     + ++    + AGP      P G   +  E + +    + +   + + + H 
Sbjct: 607  DISD----DEEEELTSAEQAGPIKILADPLGFMKECLEEIPIETEPSLEERGQFSTDYH- 661

Query: 1736 YQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDIPIDPHQDR 1915
                SEK +    +NY ++F    C   HG+ I  P+DGNCFF+A    F++   P   R
Sbjct: 662  ----SEKFE----INYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFEVE-RPDTLR 712

Query: 1916 EELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVH----QDDKCFEY 2074
             + + +L+E NG  +  L E IRPNGV+ E E IY +  FR V +++H    + +  +  
Sbjct: 713  SDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAV 772

Query: 2075 GEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYGERSELLNFKFVESDFNCFV 2245
              G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + E  E+  F F    FNC  
Sbjct: 773  HRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE--EITKFHFRPDHFNCAQ 830

Query: 2246 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2425
            ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC    D+N AL+ FY+  S L
Sbjct: 831  FRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSL 889

Query: 2426 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2605
            G+HRDNE+VY DDPILTV   G   F++EF+  V    M   SF +MPKG QK+ARH V 
Sbjct: 890  GFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVS 949

Query: 2606 AYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALESF 2785
                R+SITFRKHVR L+G+ I+  E +     KN CLI A ++ +K     +   L++ 
Sbjct: 950  NEMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLINAFSKAMKRSKQAIIAKLKTV 1005

Query: 2786 DKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQFRKGHYTL 2965
            +   WS +  E +G ++ DC    EAL + ++++ + K  V+  G   + +  +  H+++
Sbjct: 1006 NSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKYVVLGKGALRISMALKNNHFSV 1065

Query: 2966 LREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYNAIQFNAEAEKFLKLRKSFL 3136
            +     + R+  SH  +KGNVNV++G  E +S        N IQF A  E    L  SFL
Sbjct: 1066 INAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANFEFARILANSFL 1125

Query: 3137 QRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKK 3316
              TTGI LG+ LDNG K+F   H L    K +      + GFAGSGKSR +Q WL  RKK
Sbjct: 1126 NMTTGICLGKALDNGEKYF--LHILKDRVKQIGTDVTMVCGFAGSGKSRKLQSWLHSRKK 1183

Query: 3317 GNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYL 3496
            GNF VV PR  L  DW FKL  EP +  KV TFE FIK +KSKLDLI++DELTLFPNGYL
Sbjct: 1184 GNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYL 1243

Query: 3497 DWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRL 3676
            D L +EL  +    +++L+FDPLQARYHN+ D  IL FEHDVD L G + ++Y+Y + R+
Sbjct: 1244 DLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRM 1303

Query: 3677 NKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGT 3853
            ++ F+  F       +    + ++W+  +  SI     D+++P DVLLV+S +EK  +  
Sbjct: 1304 SRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSP 1363

Query: 3854 QFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLV 4033
                +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRA+ R S C + LGG+++F V
Sbjct: 1364 IINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKV 1423

Query: 4034 SCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIY 4213
              K  L    L+ EKI   +L  M + NL+  + + GC  DE+DREERL GDPFLKPFI+
Sbjct: 1424 KRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-DEVDREERLEGDPFLKPFIF 1482

Query: 4214 LGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQF 4393
            LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD IR KE+REYREDMLVT+QF
Sbjct: 1483 LGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQF 1542

Query: 4394 CDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLG 4564
            CDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAV+KRL+FREE EN  RL 
Sbjct: 1543 CDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVRKRLIFREEEENYQRLS 1599

Query: 4565 DAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWAL 4744
             AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+KS  TIKSHSIRSD+DWAL
Sbjct: 1600 RAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWAL 1659

Query: 4745 NDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYI 4924
            NDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR QLPEEIYI
Sbjct: 1660 NDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYI 1719

Query: 4925 HSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYV 5104
            HSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSFE+HLMKDA FP ++IDAY+
Sbjct: 1720 HSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYI 1779

Query: 5105 DLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNN 5284
            DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYEWR GQPIAFAGDDMCALNN
Sbjct: 1780 DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNN 1839

Query: 5285 LPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVME 5464
            L + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQ+AIEEGKV+E
Sbjct: 1840 LAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLE 1899

Query: 5465 CLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSE 5644
            CLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVTH+DKLKTKVR LF EQSS+
Sbjct: 1900 CLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSD 1959

Query: 5645 EDI 5653
            EDI
Sbjct: 1960 EDI 1962



 Score = 68.2 bits (165), Expect = 6e-08
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGYLPHSHP SK  ENH+L DV PGVVN    + C IKE K
Sbjct: 63  LYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
            gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
            replication protein; Includes: RecName: Full=RNA-directed
            RNA polymerase; Includes: RecName: Full=Helicase
            gi|14270249|emb|CAC39422.1| hypothetical protein [Citrus
            leaf blotch virus]
          Length = 1962

 Score = 1833 bits (4747), Expect = 0.0
 Identities = 977/1863 (52%), Positives = 1249/1863 (67%), Gaps = 29/1863 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+HHW+K  
Sbjct: 138  INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 196  MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ +DM  IF
Sbjct: 256  LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 316  LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGTL ++VER
Sbjct: 376  RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF+N +  D
Sbjct: 436  KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495

Query: 1229 PRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSKAVFPCEE 1390
             ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S   F   E
Sbjct: 496  LKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLLE 555

Query: 1391 GIENGKHFDAYASTLKRLVKEGEMCT-NAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSF 1567
             +  GK  D      K+     + CT + Y+  +  E L+   +  EE +E   L A   
Sbjct: 556  ALL-GKRIDP-----KKYSYSKQACTLSNYLTFLCAEGLDG--FNLEEHLERR-LKAAGH 606

Query: 1568 DVNELVDGVDHDKKNGLKDAGP----NPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHG 1735
            DV++     + ++    + AGP      P G   +  E + +    + +   + + + H 
Sbjct: 607  DVSD----DEEEELTSAEQAGPIKILADPLGFMKECLEEIPIETEPSLEERGQFSTDYH- 661

Query: 1736 YQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDIPIDPHQDR 1915
                SEK +    +NY ++F    C   HG+ I  P+DGNCFF+A    F++   P   R
Sbjct: 662  ----SEKFE----INYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFEVE-RPDTLR 712

Query: 1916 EELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVH----QDDKCFEY 2074
             + + +L+E NG  +  L E IRPNGV+ E E IY +  FR V +++H    + +  +  
Sbjct: 713  SDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAV 772

Query: 2075 GEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYGERSELLNFKFVESDFNCFV 2245
              G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + E  E+  F F    FNC  
Sbjct: 773  HRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE--EITKFHFRPDHFNCAQ 830

Query: 2246 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2425
            ++GR++AF+ T  + DYGHNGMVYP N W+ S++EII+IC    D+N AL+ FY+  S L
Sbjct: 831  FRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSL 889

Query: 2426 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2605
            G+HRDNE+VY DDPILTV   G  +F++EF+  V    M   SF +MPKG QK+ARH V 
Sbjct: 890  GFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSVS 949

Query: 2606 AYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALESF 2785
                R+SITFRKHVR L+G+ I+  E +     KN CLI A ++ +K     +   L++ 
Sbjct: 950  NEMSRVSITFRKHVRRLNGSPIAIREENY----KNTCLINAFSKAMKRSKQAIIAKLKTV 1005

Query: 2786 DKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQFRKGHYTL 2965
            +   WS +  E +G ++ DC    EAL + ++++ + K  V+  G   + +  R  H+++
Sbjct: 1006 NSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGALRISMALRNNHFSV 1065

Query: 2966 LREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYNAIQFNAEAEKFLKLRKSFL 3136
            +     + R+  SH  +KGNVNV++G    +S        N IQF A  E    L  SFL
Sbjct: 1066 INAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVGAAGVNKIQFAANFEFARILANSFL 1125

Query: 3137 QRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKK 3316
              TTGI LG+ LDNG K+F   H L    K +      + GFAGSGKSR +Q WL  RKK
Sbjct: 1126 NMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVCGFAGSGKSRKLQSWLHSRKK 1183

Query: 3317 GNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYL 3496
            GNF VV PR  L  DW FKL  EP +  KV TFE FIK +KSKLDLI++DELTLFPNGYL
Sbjct: 1184 GNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYL 1243

Query: 3497 DWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRL 3676
            D L +EL  +    +++L+FDPLQARYHN+ D  IL FEHDVD L G + ++Y+Y + R+
Sbjct: 1244 DLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLIGGQNIEYIYSTHRM 1303

Query: 3677 NKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGT 3853
            ++ F+  F       +    + ++W+  +  SI     D+++P DVLLV+S +EK  +  
Sbjct: 1304 SRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSP 1363

Query: 3854 QFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLV 4033
                +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRA+ R S C + LGG+++F V
Sbjct: 1364 IINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRARTRFSLCSTFLGGIEEFKV 1423

Query: 4034 SCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIY 4213
              K  L    L+ EKI   +L  M + NL+  + + GC  DE+DREERL GDPFLKPFI+
Sbjct: 1424 KRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-DEVDREERLEGDPFLKPFIF 1482

Query: 4214 LGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQF 4393
            LGQR+ + E    E +  EP CQTHL+I+EPNF  CYNFD IR KE+REYREDMLVT+QF
Sbjct: 1483 LGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQF 1542

Query: 4394 CDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLG 4564
            CDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAV+KRLVFREE EN  RL 
Sbjct: 1543 CDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLS 1599

Query: 4565 DAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWAL 4744
             AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+KS  TIKSHSIRSD+DWAL
Sbjct: 1600 RAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWAL 1659

Query: 4745 NDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYI 4924
            NDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR QLPEEIYI
Sbjct: 1660 NDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYI 1719

Query: 4925 HSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYV 5104
            HSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSFE+HLMKDA FP ++IDAY+
Sbjct: 1720 HSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFPQKIIDAYI 1779

Query: 5105 DLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNN 5284
            DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYEWR GQPIAFAGDDMCALNN
Sbjct: 1780 DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNN 1839

Query: 5285 LPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVME 5464
            L + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQ+AIEEGKV+E
Sbjct: 1840 LAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVLE 1899

Query: 5465 CLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSE 5644
            CLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVTH+DKLKTKVR LF EQSS+
Sbjct: 1900 CLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSD 1959

Query: 5645 EDI 5653
            EDI
Sbjct: 1960 EDI 1962



 Score = 68.2 bits (165), Expect = 6e-08
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGYLPHSHP SK  ENH+L DV PGVVN    + C IKE K
Sbjct: 63  LYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1829 bits (4737), Expect = 0.0
 Identities = 973/1863 (52%), Positives = 1246/1863 (66%), Gaps = 29/1863 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+HHW+K  
Sbjct: 138  INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 196  MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ +DM  IF
Sbjct: 256  LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 316  LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGTL ++VER
Sbjct: 376  RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFN---YS 1222
             VC+ H+++ + F+VV  D + +LDPL            R DDGYLER+R+PF+N   Y 
Sbjct: 436  KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLERIRLPFWNLNDYD 495

Query: 1223 GDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSKAVFPCEE 1390
               R+  ++  L  + + ER   S  +      +I WH   +++   F+S S   F   E
Sbjct: 496  LKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKVDPFISNSITEFTLLE 555

Query: 1391 GIENGKHFDAYASTLKRLVKEGEMCT-NAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSF 1567
             +  GK  D      K+     + CT + Y+  +  E L+   +  EE +E   L A   
Sbjct: 556  ALL-GKRIDP-----KKYSYSKQACTLSNYLTFLCAEGLDG--FNLEEHLERR-LKAAGH 606

Query: 1568 DVNELVDGVDHDKKNGLKDAGP----NPPEGRQNDESEAVTLNEGGTKDGEHKENGEMHG 1735
            D+++     + ++    + AGP      P G   +  E + +        E + + E  G
Sbjct: 607  DISD----DEEEELTSAEQAGPIKILADPLGFMKECLEEIPI--------ETEPSLEERG 654

Query: 1736 YQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDIPIDPHQDR 1915
             Q  ++   +  ++NY ++F    C   HG+ I  P+DGNCFF+A    F++   P   R
Sbjct: 655  -QFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFEVE-RPDTLR 712

Query: 1916 EELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVH----QDDKCFEY 2074
             + + +L+E NG  +  L E IRP+GV+ E E IY +  FR V +++H    + +  +  
Sbjct: 713  SDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAV 772

Query: 2075 GEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYGERSELLNFKFVESDFNCFV 2245
              G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + E  E+  F+F    FNC  
Sbjct: 773  HRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSE--EITKFRFRPDHFNCAQ 830

Query: 2246 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2425
            ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC    D+N AL+ FY+  S L
Sbjct: 831  FRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEANSSL 889

Query: 2426 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2605
            G+HRDNE+VY DDPILTV   G   F++EF+G V    M   SF +MPKG QK+ARH V 
Sbjct: 890  GFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTAGSFFLMPKGFQKKARHSVS 949

Query: 2606 AYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALESF 2785
                R+SITFRKHVR L+G+ I+  E +     KN  LI+A ++ +K     +   L++ 
Sbjct: 950  NEMSRVSITFRKHVRRLNGSPIAIREENY----KNTRLIDAFSKAMKRSKQAIIAKLKTV 1005

Query: 2786 DKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQFRKGHYTL 2965
            +   WS +  E +G ++ DC    EAL + ++++ + K  V+  G   + +  +  H+++
Sbjct: 1006 NSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVNGKCVVLGKGAFRISMALKNNHFSV 1065

Query: 2966 LREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYNAIQFNAEAEKFLKLRKSFL 3136
            +     + R+  SH  +KG++NV++G  E +S        N IQF A  E    L  SFL
Sbjct: 1066 INAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVGAAGVNKIQFAANFEFARILANSFL 1125

Query: 3137 QRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKK 3316
              TTGI LG+ LDNG K+F   H L    K +      + GFAGSGKSR +Q WL  RKK
Sbjct: 1126 NMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTVVCGFAGSGKSRKLQSWLHSRKK 1183

Query: 3317 GNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYL 3496
            GNF VV PR  L  DW FKL  EP +  KV TFE FIK +KSKLDLI++DELTLFPNGYL
Sbjct: 1184 GNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDELTLFPNGYL 1243

Query: 3497 DWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRL 3676
            D L +EL  +    +++L+FDPLQARYHN+ D  IL FEHDVD L G + ++Y+Y + R+
Sbjct: 1244 DLLVYELADVNRHCQIILLFDPLQARYHNKMDESILTFEHDVDRLVGGQSIEYIYSTHRM 1303

Query: 3677 NKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGT 3853
            ++ F+  F       +    + ++W+  +  SI     D+++P DVLLV+S +EK  +  
Sbjct: 1304 SRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESDLEKKAFSP 1363

Query: 3854 QFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLV 4033
                +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR++ R S C + LGG+++F V
Sbjct: 1364 IMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFLGGIEEFKV 1423

Query: 4034 SCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIY 4213
              K  L    L+ EKI   +L  M + NL+  + + GC  DE+DREERL GDPFLKPFI+
Sbjct: 1424 KRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-DEVDREERLEGDPFLKPFIF 1482

Query: 4214 LGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQF 4393
            LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD IR KE+REYREDMLVT+QF
Sbjct: 1483 LGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYREDMLVTNQF 1542

Query: 4394 CDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLG 4564
            CDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAV+KRLVFREE EN  RL 
Sbjct: 1543 CDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREEEENYQRLS 1599

Query: 4565 DAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWAL 4744
             AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+KS  TIKSHSIRSD+DWAL
Sbjct: 1600 RAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSIRSDIDWAL 1659

Query: 4745 NDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYI 4924
            NDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR QLPEEIYI
Sbjct: 1660 NDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRNQLPEEIYI 1719

Query: 4925 HSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYV 5104
            HSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSFE+HLMKDA FP ++IDAY+
Sbjct: 1720 HSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEVHLMKDAHFPQKIIDAYI 1779

Query: 5105 DLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNN 5284
            DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYEWR GQPIAFAGDDMCALNN
Sbjct: 1780 DLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNN 1839

Query: 5285 LPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVME 5464
            L + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPEL YNRFQ+AIEEGKV+E
Sbjct: 1840 LAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELAYNRFQVAIEEGKVLE 1899

Query: 5465 CLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSE 5644
            CLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVTH+DKLKTKVR LF EQSS+
Sbjct: 1900 CLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRDLFLEQSSD 1959

Query: 5645 EDI 5653
            EDI
Sbjct: 1960 EDI 1962



 Score = 68.2 bits (165), Expect = 6e-08
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGYLPHSHP SK  ENH+L DV PGVVN    + C IKE K
Sbjct: 63  LYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
          Length = 1962

 Score = 1825 bits (4727), Expect = 0.0
 Identities = 974/1871 (52%), Positives = 1245/1871 (66%), Gaps = 37/1871 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +DV RY E     +F  S       FSR   K L   ++ FFHDE+HHW+K  
Sbjct: 138  INRLVASKDVSRYTEEA--DAFFQSKKGGPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + +R +F+VVYPPEIL  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 196  MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +L  GD  WT+ RH S YAHHLFEI  G L T+S  FF+D++ +DM  IF
Sbjct: 256  LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 316  LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FGH+  E L    ++ LP  + R    WK  N FEFL+ LGTL ++VER
Sbjct: 376  RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ H+++ + F+VV  D + +LDPL            RVDDGYLER+R+PF+N +  D
Sbjct: 436  KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495

Query: 1229 PRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FLSFSKAVFPCEE 1390
             ++K +  +  L  + + ER+  S  +      +I W+   +++   F+S S   F   E
Sbjct: 496  LKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLLE 555

Query: 1391 GIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEGLDAFSFD 1570
             +  GK  D      K+     + CT           L+  L F    +  EGLD F+ +
Sbjct: 556  ALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----LCAEGLDGFNLE 594

Query: 1571 --VNELVDGVDHDKKN-------GLKDAGP----NPPEGRQNDESEAVTLNEGGTKDGEH 1711
              +   +    HD  +        ++  GP      P    N+  E + +    + +   
Sbjct: 595  EHLERRLKAAGHDTSDDEEEELTSVEQTGPIKILADPLSFMNECLEEIPIETEPSLEERG 654

Query: 1712 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 1891
            + + + H     SEK +    +NY ++F    C   HG+ I  P+DGNCFF+A    F++
Sbjct: 655  QFSTDYH-----SEKFE----INYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFEV 705

Query: 1892 PIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVH---- 2050
               P   R + + +L+E NG  +  L E IRP+G++ E E IY +  FR V +++H    
Sbjct: 706  E-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFCVFRGVTLIIHDRTH 764

Query: 2051 QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLPIIYGERSELLNFKFV 2221
            + +  +    G +EGH++ RGNHF+ +  Y+  +  S   + D+P  + E  E+  F F 
Sbjct: 765  KKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPCGFSE--EITKFHFR 822

Query: 2222 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 2401
               FNC  ++GR++AF+ T  + DYGHNGMVYP N W+ S+DEII+IC    D+N AL+ 
Sbjct: 823  PDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALIN 881

Query: 2402 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 2581
            FY+  S LG+HRDNE+VY DDPILTV   G   F++EF+  V    M   SF +MPKG Q
Sbjct: 882  FYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQ 941

Query: 2582 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 2761
            K+ARH V     R+SITFRKHVR L+G+ I+  E +     KN CLI+A ++ +K     
Sbjct: 942  KKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENY----KNTCLIDAFSKAMKRSKQA 997

Query: 2762 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 2941
            +   L++ +   WS +  E +G ++ DC    EAL + ++++   K  V+  G   + + 
Sbjct: 998  IIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSGKYVVLGKGAFRISMA 1057

Query: 2942 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---VEHYNAIQFNAEAEKF 3112
             +  H++++     + R+  SH  +KGNVNV++G  E +S        N IQF A  E  
Sbjct: 1058 LKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGAAGVNKIQFAANFEFA 1117

Query: 3113 LKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQ 3292
              L  SFL  TTGI LG+ LDNG K+F   H L    K +      + GFAGSGKSR +Q
Sbjct: 1118 RILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVTMVCGFAGSGKSRKLQ 1175

Query: 3293 DWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDEL 3472
             WL  RKKGNF VV PR  L  DW FKL  EP +  KV TFE FIK +KSKLDLI++DEL
Sbjct: 1176 SWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFIKTDKSKLDLIVIDEL 1235

Query: 3473 TLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELK 3652
            TLFPNGYLD L +EL  +    +++L+FDPLQAR+HN+ D  IL FEHDVD L G + ++
Sbjct: 1236 TLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILTFEHDVDRLVGGQSIE 1295

Query: 3653 YLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSR 3829
            Y+Y + R+++ F+  F       +    + ++W+  +  SI     D+++P DVLLV+S 
Sbjct: 1296 YIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSICSDRQEPCDVLLVESD 1355

Query: 3830 VEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHL 4009
            +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTR++ R S C + L
Sbjct: 1356 LEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRSRTRFSLCSTFL 1415

Query: 4010 GGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGD 4189
            GG+++F V  K  L    L+ EKI   +L  M + NL+  + + GC  DE+DREERL GD
Sbjct: 1416 GGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENGCR-DEVDREERLEGD 1474

Query: 4190 PFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRE 4369
            PFLKPFI+LGQRI + E    E +  EP CQTHL+I+EPNF  CYNFD IR KE+REYRE
Sbjct: 1475 PFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRE 1534

Query: 4370 DMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREE 4540
            DMLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAV+KRLVFREE
Sbjct: 1535 DMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVRKRLVFREE 1591

Query: 4541 NENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSI 4720
             EN  RL  AHL+GGLLY NFK+   ++F  DQ LLE+  N FE KKL+KS  TIKSHSI
Sbjct: 1592 EENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEKKKLEKSCGTIKSHSI 1651

Query: 4721 RSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIRE 4900
            RSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR 
Sbjct: 1652 RSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLETQIRN 1711

Query: 4901 QLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFP 5080
            QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEYILSFE+HLMKDA FP
Sbjct: 1712 QLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKDAHFP 1771

Query: 5081 DEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAG 5260
             ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTMCRYEWR GQPIAFAG
Sbjct: 1772 RKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAG 1831

Query: 5261 DDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIA 5440
            DDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQ+A
Sbjct: 1832 DDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYGIVKEPELVYNRFQVA 1891

Query: 5441 IEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRL 5620
            IEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VRFIVTH+DKLKTKVR 
Sbjct: 1892 IEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVRFIVTHIDKLKTKVRD 1951

Query: 5621 LFEEQSSEEDI 5653
            LF EQSS+EDI
Sbjct: 1952 LFLEQSSDEDI 1962



 Score = 68.2 bits (165), Expect = 6e-08
 Identities = 29/44 (65%), Positives = 32/44 (72%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGYLPHSHP SK  ENH+L DV PGVVN    + C IKE K
Sbjct: 63  LYPNGYLPHSHPLSKIFENHLLFDVLPGVVNTSRLVMCSIKESK 106


>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1803 bits (4671), Expect = 0.0
 Identities = 966/1870 (51%), Positives = 1227/1870 (65%), Gaps = 36/1870 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  INRLVASKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 1229 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 1390
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 1391 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 1543
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESES 614

Query: 1544 EGLDAFSFDVNELVDGVD---HDKKNGLKDAGPN-PPEGRQNDESEAVTLNEGGTKDGEH 1711
            EGL   + + +   D  +     + +GL    P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 1712 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 1891
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 1892 PIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 2056
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 2057 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 2221
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 2222 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 2401
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 2402 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 2581
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 2582 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 2761
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 2762 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 2941
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 2942 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 3115
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 3116 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 3295
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 3296 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 3475
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 3476 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 3655
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 3656 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 3832
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 3833 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4012
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4013 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDP 4192
            GMD+F +     L    L  ++I   +   M + NL+ ++ K GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4193 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4372
            FLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4373 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4543
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4544 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 4723
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 4724 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 4903
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 4904 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 5083
            LPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFDACQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHLMKDAHFPQ 1797

Query: 5084 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 5263
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 5264 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 5443
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 5444 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 5623
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 5624 FEEQSSEEDI 5653
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987



 Score = 64.3 bits (155), Expect = 9e-07
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGY+PHSHP SK  ENHIL DV P VV+    I C IKE K
Sbjct: 63  LYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1802 bits (4667), Expect = 0.0
 Identities = 966/1870 (51%), Positives = 1227/1870 (65%), Gaps = 36/1870 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 1229 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 1390
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 1391 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 1543
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESES 614

Query: 1544 EGLDAFSFDVNELVDGVD---HDKKNGLKDAGPN-PPEGRQNDESEAVTLNEGGTKDGEH 1711
            EGL   + + +   D  +     + +GL    P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 1712 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 1891
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 1892 PIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 2056
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 2057 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 2221
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 2222 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 2401
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 2402 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 2581
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 2582 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 2761
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 2762 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 2941
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 2942 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 3115
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 3116 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 3295
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 3296 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 3475
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 3476 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 3655
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 3656 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 3832
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 3833 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4012
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4013 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDP 4192
            GMD+F +     L    L  ++I   +L  M + NL+ ++ K GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4193 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4372
            FLKPFI+LGQRI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4373 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4543
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4544 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 4723
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 4724 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 4903
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 4904 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 5083
            LPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQ 1797

Query: 5084 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 5263
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 5264 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 5443
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 5444 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 5623
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 5624 FEEQSSEEDI 5653
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987



 Score = 64.3 bits (155), Expect = 9e-07
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGY+PHSHP SK  ENHIL DV P VV+    I C IKE K
Sbjct: 63  LYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1801 bits (4664), Expect = 0.0
 Identities = 965/1870 (51%), Positives = 1226/1870 (65%), Gaps = 36/1870 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 1229 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 1390
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 1391 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 1543
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESEL 614

Query: 1544 EGLDAFSFDVNELVDGVD---HDKKNGLKDAGPN-PPEGRQNDESEAVTLNEGGTKDGEH 1711
            EGL   + + +   D  +     + +GL    P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 1712 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 1891
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 1892 PIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 2056
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 2057 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 2221
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 2222 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 2401
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 2402 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 2581
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 2582 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 2761
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 2762 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 2941
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 2942 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 3115
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 3116 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 3295
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 3296 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 3475
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 3476 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 3655
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 3656 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 3832
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 3833 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4012
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4013 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDP 4192
            GMD+F +     L    L  ++I   +   M + NL+ ++ K GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4193 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4372
            FLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4373 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4543
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4544 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 4723
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 4724 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 4903
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 4904 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 5083
            LPEEIYIHSN+NFDDLNRWVK  F +DICVESDYEAFD CQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQ 1797

Query: 5084 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 5263
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 5264 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 5443
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 5444 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 5623
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 5624 FEEQSSEEDI 5653
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987



 Score = 64.3 bits (155), Expect = 9e-07
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGY+PHSHP SK  ENHIL DV P VV+    I C IKE K
Sbjct: 63  LYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
          Length = 1987

 Score = 1798 bits (4656), Expect = 0.0
 Identities = 964/1870 (51%), Positives = 1225/1870 (65%), Gaps = 36/1870 (1%)
 Frame = +2

Query: 152  LNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSKKS 331
            +N ++  +D+ RY E      F+    ++   FS    + +   ++ FFHDE+HHW+K  
Sbjct: 139  VNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKAQ 197

Query: 332  IFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYEQP 511
            +F FL   + RR +F++VYPPE+L  + NSQNPK+Y FK+ + RLFFFPDGV +E YEQ 
Sbjct: 198  MFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 257

Query: 512  ANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDMHHIF 691
             N+ WLF   +   GD+TWT+ RH S Y+HHLFE+  G L ++S  FF+D+  +DM  IF
Sbjct: 258  LNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKIF 317

Query: 692  KNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQLCK 871
             +RF+ Y++FP+  +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQ CK
Sbjct: 318  LDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 377

Query: 872  RLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLNIEVER 1051
            RLIER TS+G+FG++  + L    ++ +P  + R    WK  N FEFL+ LGTL +E+ER
Sbjct: 378  RLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIER 437

Query: 1052 GVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPFFNYSG-D 1228
             VC+ HI++ + F+VV  D + +LDPL            RVDDGYL+RV++PF+N    D
Sbjct: 438  RVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDYD 497

Query: 1229 PRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFSKAVFPCEE 1390
            P++    +     +K  +  +  +    P+K   +I W+     D  F++   + F   E
Sbjct: 498  PKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANGISEFTILE 556

Query: 1391 GIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEGVEP----- 1543
             +   + H + Y+ + +  V       +C      +  +  L   L  +  G +P     
Sbjct: 557  ALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAGRDPIESEL 614

Query: 1544 EGLDAFSFDVNELVDGVD---HDKKNGLKDAGPN-PPEGRQNDESEAVTLNEGGTKDGEH 1711
            EGL   + + +   D  +     + +GL    P    EG     ++    +EG     E 
Sbjct: 615  EGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESEGEIGKEES 674

Query: 1712 KENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFNALQHIFDI 1891
             E G +   +     K + D   + ++F    C   HG  I  P DGNCFF+A    FD 
Sbjct: 675  FEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDC 731

Query: 1892 PIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVKIVVHQD-- 2056
            P D    R   A +L       +  +G  IRPNGV+ E E IY +  +R V +++H    
Sbjct: 732  P-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTN 790

Query: 2057 --DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERSELLNFKFV 2221
              +  F    G +EGH++ RG+HFL +  Y      S  ++ +LP  Y E  EL NF F 
Sbjct: 791  DRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE--ELRNFHFK 848

Query: 2222 ESDFNCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQ 2401
               FNC  ++GR+ AFL T  + DYGHNGMVYP N W+ S+DEII+ICD   D+N AL+ 
Sbjct: 849  PEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALIN 907

Query: 2402 FYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQ 2581
            FY   S LG+HRDNE+VY DDPILTV   G   FS+EF+       M   SF +MP+G Q
Sbjct: 908  FYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQ 967

Query: 2582 KQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIK 2761
            ++ARH V     R+SITFRKH+R L G+ I+ I  D+    +N+CLI A+++ L      
Sbjct: 968  RKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSKALNRGMQA 1023

Query: 2762 VKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQ 2941
            +   L++ +   WS F  + +G ++ DC    EAL + +++  D K  V+  G   V + 
Sbjct: 1024 IIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGEGAVRVSLA 1083

Query: 2942 FRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQFNAEAEKFL 3115
             +  H++++ E  ++ R+  SH  KK N+ V+ GL E +        N +QF A+ E   
Sbjct: 1084 LKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQFIADFEHAR 1143

Query: 3116 KLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQD 3295
             L  SFL  TTGI L   LDNG K+F   H      K +      + GFAGSGKSR +Q 
Sbjct: 1144 VLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGSGKSRQLQS 1201

Query: 3296 WLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELT 3475
            WL  RK+GNF VV PR  L  DW FKL  EP +  KV TFE+FIK +KSKLD+I+LDELT
Sbjct: 1202 WLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLDMIVLDELT 1261

Query: 3476 LFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKY 3655
            LFPNGYLD L +EL +  S   ++L+FDPLQARYHN+ D  +L+FEHDVD L G ++L+Y
Sbjct: 1262 LFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRLIGGQDLRY 1321

Query: 3656 LYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRV 3832
            +Y S R++K F+  F       + T  + ++W++ +  SI     D+ +P DVLLV+S +
Sbjct: 1322 IYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCDVLLVESDL 1381

Query: 3833 EKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLG 4012
            EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+SFC + LG
Sbjct: 1382 EKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRLSFCSTFLG 1441

Query: 4013 GMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDP 4192
            GMD+F +     L    L  ++I   +   M + NL+ ++ K GC  DE+DREERL GDP
Sbjct: 1442 GMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDREERLEGDP 1500

Query: 4193 FLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYRED 4372
            FLKPFI+LG RI +      E E  EP CQTHL+I+EPNF  CYNFD IR KE+REYRED
Sbjct: 1501 FLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREKEQREYRED 1560

Query: 4373 MLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREEN 4543
            MLVT+QFCDSY+   I G R    T GP+RFKAIYPKHS  DDMTFWMAVKKRLVFREE 
Sbjct: 1561 MLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKKRLVFREEE 1617

Query: 4544 ENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIR 4723
            EN  RL  AHL+GGLLY NFK    ++F  DQ L E+  N FE KKL+KS  TIKSHSIR
Sbjct: 1618 ENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCGTIKSHSIR 1677

Query: 4724 SDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQ 4903
            SDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRYLE+QIR Q
Sbjct: 1678 SDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLEAQIRNQ 1737

Query: 4904 LPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPD 5083
            LPEEIYIHSN+NFDDL RWVK  F +DICVESDYEAFD CQDEYILSFE+HLMKDA FP 
Sbjct: 1738 LPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHLMKDAHFPQ 1797

Query: 5084 EVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGD 5263
             VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR GQPIAFAGD
Sbjct: 1798 RVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRGQPIAFAGD 1857

Query: 5264 DMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAI 5443
            DMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELVYNRFQIAI
Sbjct: 1858 DMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELVYNRFQIAI 1917

Query: 5444 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLL 5623
            EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DKLKT+V+ L
Sbjct: 1918 EEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKTRVKDL 1977

Query: 5624 FEEQSSEEDI 5653
            F EQSS+EDI
Sbjct: 1978 FLEQSSDEDI 1987



 Score = 64.3 bits (155), Expect = 9e-07
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L+PNGY+PHSHP SK  ENHIL DV P VV+    I C IKE K
Sbjct: 63  LYPNGYMPHSHPLSKIFENHILFDVLPDVVSTSKLIMCSIKESK 106


>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  946 bits (2444), Expect = 0.0
 Identities = 467/618 (75%), Positives = 518/618 (83%), Gaps = 3/618 (0%)
 Frame = +2

Query: 3809 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3988
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 3989 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDR 4168
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ K GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4169 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4348
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4349 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4519
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4520 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4699
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 4700 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4879
            TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 4880 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5059
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDI VESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHL 416

Query: 5060 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5239
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 5240 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5419
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 5420 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5599
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 5600 LKTKVRLLFEEQSSEEDI 5653
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
            virus] gi|571026291|emb|CDF66416.2|
            replication-associated polyprotein [Apricot vein clearing
            associated virus]
          Length = 1679

 Score =  944 bits (2441), Expect = 0.0
 Identities = 531/1178 (45%), Positives = 717/1178 (60%), Gaps = 44/1178 (3%)
 Frame = +2

Query: 2246 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2425
            ++GR S F + S EIDYGHNG  Y    W + +D+ I     D  +NA LVQ YD+GS +
Sbjct: 511  FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567

Query: 2426 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2605
            G+H+DNE+ Y   PILTVN  G+A F  EF  G     + D   +++     ++ RH+V 
Sbjct: 568  GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLRKKRHRVT 623

Query: 2606 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 2776
            + +  RIS+TFR+HV  ++ + +    +++    KN C+I AVA  L   S+ +  K   
Sbjct: 624  SLSDSRISLTFRRHVCRMNKSPLEFF-SNNGKLGKNKCIIHAVAMALGQTSNTVANKIVA 682

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 2947
            +  D ++      +D          +   + L+  +  +++   M      L+K  F   
Sbjct: 683  QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 739

Query: 2948 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3127
              H  +L +  N             ++        +    ++   IQ+ A+ E+ +KL  
Sbjct: 740  DEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 799

Query: 3128 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3283
            SFL  TTG +L E++  G +FF     +             + GFAGSGKS        R
Sbjct: 800  SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 859

Query: 3284 VMQD-WLVKRKKG--------------------NFIVVCPRVTLMHDWLFKLGSEPRDAH 3400
            + ++  L K KKG                    +  ++ PR  L  DW  KLG    +  
Sbjct: 860  ISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 919

Query: 3401 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3580
             V TFE   K   SK+ LI++DELTLFPNGY+D L F +       +++LIFDPLQARY 
Sbjct: 920  SVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYD 979

Query: 3581 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPM--------PSGTAS 3736
            +  D  IL  EHDVD + G+ E+ Y+Y S R         +E+L           +G  +
Sbjct: 980  SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKNEVDAESRETGKGA 1039

Query: 3737 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 3913
              +  + +N  +++    ++  P DVLLV S  E  ++ +  +T+TFGE+QGLT +H  I
Sbjct: 1040 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1099

Query: 3914 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4093
            +LSE++A S++ RW VALTRA+++V+F   HL G++ FL + ++ L    + K  + K +
Sbjct: 1100 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKR 1159

Query: 4094 LQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4273
            L  M RA L +   K   G DE+DRE+RL GD FLK  I+LGQR    E   +EP   + 
Sbjct: 1160 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKE 1219

Query: 4274 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4453
              +TH F+ + NFAQCYNFD IR KE RE+R    VT+QF D+Y I        T GP+R
Sbjct: 1220 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKHTAGPLR 1279

Query: 4454 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 4633
            F+AIYP+H   DD+TF MAV KRL F  E + R +L  AH  G +L++N  +   ++F  
Sbjct: 1280 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1339

Query: 4634 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 4813
            D  L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1340 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1399

Query: 4814 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 4993
            AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKKH   D+CV
Sbjct: 1400 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCV 1459

Query: 4994 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 5173
            ESDYEAFDA QD+YILSFE+ +M+    P+++I AY+DLK  LGCKLGHFA+MRFTGEF 
Sbjct: 1460 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1519

Query: 5174 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 5353
            TFLFNTLAN+AFTMCRYEW  G PIAFAGDDMCAL NL +   F  +FEKISLKAK + T
Sbjct: 1520 TFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQIT 1579

Query: 5354 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 5533
            E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1580 EVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1639

Query: 5534 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5647
            K E Q++YHQA VRFIV HL  L+TKV+ LF EQS+E+
Sbjct: 1640 KREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677



 Score =  229 bits (585), Expect(2) = 4e-64
 Identities = 119/298 (39%), Positives = 174/298 (58%), Gaps = 7/298 (2%)
 Frame = +2

Query: 143  IEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKILGLHKSFFFHD 304
            ++ +N ++  +D GRY   V   S    S+S +        F R  K      ++   HD
Sbjct: 120  LKTINRLLCAKDFGRYD--VDTDSSVIRSISREAPDILPEPFVRAVKG-----RNVMIHD 172

Query: 305  EIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIR-DRLFFFPD 481
            E+HHW+   +  FL+  +P R VFSVVYP E+L G   SQNPKMY F+  + D++ FFPD
Sbjct: 173  EVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIVFFPD 232

Query: 482  GVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFND 661
            G  SEGYEQ ANL WLF   +       WT+ R  S Y+HHLFE+VPG   T+   FFND
Sbjct: 233  GRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIRFFND 292

Query: 662  FDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIK 841
            F+ +D+  IFK+RF   D  P++   V +VYSYL+CLKKPD++S +AKL+Q++GDD++++
Sbjct: 293  FETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDDLDVR 352

Query: 842  EFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFL 1015
              +FF  L  R++     F +F  +++     K ++  P +L+    TWK  N  + L
Sbjct: 353  VQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGNFIKKL 410



 Score = 47.0 bits (110), Expect(2) = 4e-64
 Identities = 24/44 (54%), Positives = 28/44 (63%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISCPIKEKK 134
           L P  YL HSHPFSK LENHIL +V PG +   S++   IK  K
Sbjct: 65  LHPTPYLAHSHPFSKMLENHILLNVLPGHITG-SWVFSSIKPSK 107


>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
          Length = 614

 Score =  942 bits (2434), Expect = 0.0
 Identities = 465/618 (75%), Positives = 517/618 (83%), Gaps = 3/618 (0%)
 Frame = +2

Query: 3809 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3988
            VLLV+S +EK  +      +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R 
Sbjct: 1    VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60

Query: 3989 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMKFGCGIDEMDR 4168
            SFC + LGG+DDF +     L    L+ EKI   +L  M + NL+ ++ K GC  DE+DR
Sbjct: 61   SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119

Query: 4169 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4348
            EERL GDPFLKPFI+LGQRI + +    E E EEPRCQTHL+I+EPNF  CYNFD IR K
Sbjct: 120  EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179

Query: 4349 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4519
            E+REYREDMLVT+QFCDSY+   I G R    T GPMRFKAIYPKHS  DDMTFWMAVKK
Sbjct: 180  EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236

Query: 4520 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4699
            RL+FREE EN  RL  AHL+GGLLY NFK    ++F  DQ LLE   N FE KKL+KS+ 
Sbjct: 237  RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296

Query: 4700 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4879
            TI+SHSIRSD+DWALNDVFLFMKSQL TK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297  TIRSHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356

Query: 4880 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 5059
            LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDICVESDYEAFDA QDEYILSFE+HL
Sbjct: 357  LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHL 416

Query: 5060 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5239
            MKDA FP  VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417  MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476

Query: 5240 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5419
            QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477  QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536

Query: 5420 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5599
            YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537  YNRFQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDK 596

Query: 5600 LKTKVRLLFEEQSSEEDI 5653
            LKTKVR LF EQSS+EDI
Sbjct: 597  LKTKVRDLFLEQSSDEDI 614


>gb|AGK63259.1| replicase [Cherry mottle leaf virus]
          Length = 1887

 Score =  665 bits (1716), Expect = 0.0
 Identities = 444/1172 (37%), Positives = 641/1172 (54%), Gaps = 49/1172 (4%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSD 2422
            K ++S +++    + Y HN + YP       + E I+K  D  G  +NAALVQ Y++G  
Sbjct: 703  KLKKSIYVTLDSPMVYFHNSISYPSMEASGLIKEWILKKADDYGVPFNAALVQVYEKGCI 762

Query: 2423 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2602
            LG H+DNE  Y + PILTVN+SG A FS +  G    +E+     L+MP+  Q++ RH V
Sbjct: 763  LGMHKDNESCYGNHPILTVNVSGEATFSTDCCGNT--IELKSGDELLMPENFQRKFRHGV 820

Query: 2603 HAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVK-RAL 2776
             + +  R+S+T R H RD S       E      KK  CL  A+AE +   P +V  R L
Sbjct: 821  RSDSDGRMSVTLRVHERDFSFE-----EKRKFVDKKYDCLFIAIAEMISKKPEEVMLRCL 875

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
             + D+   +       G  L D   +    ++ +E   D   I V   G  L K+  R  
Sbjct: 876  NTLDRCIMNK------GCDLTDLRSICNGYEIKVECQGDCGLIEVGDTGLPLGKLLLRGN 929

Query: 2954 HYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVEHYNAI-QFNAEAEKFL 3115
            H++L  +      +L  S    +   G ++ V+   I+ +  +E   +I +   + ++  
Sbjct: 930  HFSLCSKRRSNLDSLANSMKEVSSLAGGLDYVMFNFIKRLKLIEPDISISETKVDIKRGG 989

Query: 3116 KLRKSFLQRTTGILLGEVLDNGGKFFKEAH----------------DLAIETKVVSNL-- 3241
            KL K  ++  TGI+      +G +  K                   D   + K++S L  
Sbjct: 990  KLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSSDMRSLIGAMRGNVDGIEKNKLLSELEE 1049

Query: 3242 -------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 3394
                    + + GFAGSGKS  +Q+ + K  +G+   +VVCPR  L  DW  K G E  D
Sbjct: 1050 LNFQKVPIYGIFGFAGSGKSHTIQNLISKEFRGSQGLMVVCPRKFLAKDWSEK-GVEEMD 1108

Query: 3395 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSC--AEVVLIFDPLQ 3568
               + TFE+ +K +     + ILDE+TL P G+ D L  ++    +   + ++ + DPLQ
Sbjct: 1109 ---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKNSTIICLGDPLQ 1165

Query: 3569 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SGTASDGK 3745
            A Y ++ D   L+ E +V  L  E  ++Y + S R+NK    Q       P +G     +
Sbjct: 1166 ASYFSQKDDSYLEREAEVKRLFPEG-VEYKWFSHRINKFVAKQLSIQTTNPFAGIDGQSQ 1224

Query: 3746 IW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3919
            I+  + S   SIR++  + E   ++LV S +EK +Y    RT+TFGE+QGLTF    IVL
Sbjct: 1225 IYGDVQSAICSIRKTGVEVE---IILVASMIEKELYNNLGRTITFGESQGLTFGVGVIVL 1281

Query: 3920 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINK--VK 4093
            SE T   ++    VA+TR  +  SF +   G  D+++   K+ L          +K  + 
Sbjct: 1282 SEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFIL 1341

Query: 4094 LQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4273
                 + NL  + +K G GIDEMDREERLSGDP+LK  IYLG+R +  E +      E+ 
Sbjct: 1342 SSSSVKLNLSEKLIKKGAGIDEMDREERLSGDPWLKTQIYLGKRFHLREPLGQVCNLEDS 1401

Query: 4274 RCQTHLFI--SEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDT--TV 4441
              + HL I  S+  + +  N   ++ +E+RE++     + QF +     GP  +      
Sbjct: 1402 AIKCHLPICNSQTLYVELSN---MKAREDREFKGKDGWSKQFREE---AGPNWSSPYKIA 1455

Query: 4442 GPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKI 4621
             PM F+AIYP+H   DD+TF+ A+KKRL F     N  +   +   G  L   F    ++
Sbjct: 1456 QPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVASNYVKFKQSQSRGQYLLKVFLEHIEL 1515

Query: 4622 DFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 4801
                +Q LL +CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+F
Sbjct: 1516 RPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRF 1575

Query: 4802 CDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMR 4981
             DAKAGQTLACFQH ILV+F+PWCRY+E  +   +PE  YIH  +NF +L  + K+    
Sbjct: 1576 EDAKAGQTLACFQHRILVEFSPWCRYVEKILSACMPENFYIHQRKNFSELESFAKRFSDG 1635

Query: 4982 DICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFT 5161
              CVESDY AFD  QD  IL+FE+ L++  G+ + ++++Y+ +KC LGCKLG FA+MRFT
Sbjct: 1636 STCVESDYTAFDVSQDHTILAFEVELLRYVGWDESILNSYIKMKCTLGCKLGGFAIMRFT 1695

Query: 5162 GEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAK 5341
            GEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E I EK+SLKAK
Sbjct: 1696 GEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREMSKHEHILEKLSLKAK 1755

Query: 5342 VERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 5521
            V RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E S+AY L ERL
Sbjct: 1756 VNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERL 1815

Query: 5522 YEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 5617
            ++ L+   Q+ YHQ   RF V +   L+   R
Sbjct: 1816 FQYLEI-GQLNYHQVLARFSVKNSHLLRGSAR 1846



 Score =  118 bits (295), Expect(2) = 4e-27
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 13/281 (4%)
 Frame = +2

Query: 140 NIEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 319
           N ++ N ++  RD  RY ++           S                 ++F HDEIH+W
Sbjct: 120 NYDIFNRLVTSRDKSRYGDLTQPSRIGGPKGS-----------------NYFIHDEIHYW 162

Query: 320 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 499
           S+  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I +  L + PDG  SE 
Sbjct: 163 SRPQLETFLDLKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES 222

Query: 500 YEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPG-RLHTESTFF 652
           Y Q     +L       FKNK   DG  K +++    +  +HH+F I P   L  +    
Sbjct: 223 YTQSIENGYLLSTNCISFKNK---DGVRKQYSVSLVYTLGSHHVFHIFPNLGLIEDEVRR 279

Query: 653 FNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDD 829
           F  +D+ D+  +FK   +     FP++     K++ Y+  LKKPD +S +AKLRQ+   +
Sbjct: 280 FGPYDLFDVGSLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQLCDSE 337

Query: 830 VEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 943
           + I+     ++  KR IE+G        F   L +H F K+
Sbjct: 338 ISIEAVFLIQEFAKR-IEKGGVLSWSCSFFEYLKDHFFDKI 377



 Score = 34.7 bits (78), Expect(2) = 4e-27
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISC 116
           L P  +  HSHP  KTLENHIL +V    ++   +++C
Sbjct: 62  LSPFSFEVHSHPGCKTLENHILYNVVAPNISKYPYVAC 99


>ref|NP_062428.1| replicase [Cherry mottle leaf virus]
            gi|9294781|gb|AAF86666.1|AF170028_1 216kDa protein
            [Cherry mottle leaf virus]
          Length = 1887

 Score =  662 bits (1708), Expect = 0.0
 Identities = 437/1183 (36%), Positives = 639/1183 (54%), Gaps = 60/1183 (5%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPR-------NGWLSSMDEIIKICDPDGDYNAALVQFY 2407
            KG++S +++    + Y HN + YP          W+ S  E     D    +NAALVQ Y
Sbjct: 703  KGKKSVYVTLDSPMVYFHNSISYPSIEATGLIKDWILSKAE-----DYGVPFNAALVQVY 757

Query: 2408 DEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQ 2587
            ++   LG H+DNE  Y + PILTVN+SG A FS +  G   +++  D   L+MP+  Q++
Sbjct: 758  EKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTMELDSGDE--LLMPEDFQRK 815

Query: 2588 ARHKVHAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKV 2764
             RH V + T  R+S+T R H RD S       E     + K  CL  A+A  +   P  +
Sbjct: 816  FRHGVKSITDGRMSVTLRVHERDFSFE-----EKRKFIEGKYDCLFVAMAAMISKKPEDI 870

Query: 2765 K-RALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKI 2938
              + L + D+   +       G  L D   +    ++ +E   D   + +   G  L K+
Sbjct: 871  MFKCLNTLDRCVMNK------GCDLTDLRSICSGYEIKVECQGDCGLVEIGDIGLPLGKL 924

Query: 2939 QFRKGHYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVE-HYNAIQFNAE 3100
              R  H+TL  +      +L  SS   +   G ++ V+   I+ +  +E   +  +   +
Sbjct: 925  ILRGNHFTLCSKRRSNLDSLANSSKDVSSLSGGIDYVMVNFIKRLRSIEPDLSRSEIKVD 984

Query: 3101 AEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAI----------------ETKVV 3232
             ++  KL K  ++  TGI+      +G +  K   + A                 + K++
Sbjct: 985  IKRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLIGAMRGNVDGMEKNKLL 1044

Query: 3233 SNL---------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLG 3379
            + L          + + GFAGSGKS  +Q+ + K  +G+   ++VCPR  L  DW  K G
Sbjct: 1045 NELEELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGSQGLMIVCPRKFLAKDWSEK-G 1103

Query: 3380 SEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ---MKSCAEVVL 3550
             E  D   + TFE+ +K +     + ILDE+TL P G+ D L  ++     +KS + ++ 
Sbjct: 1104 VEEMD---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKS-STIIC 1159

Query: 3551 IFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SG 3727
            + DPLQA Y ++ D   L+ E +V  L  +  ++Y + S R+NK    Q          G
Sbjct: 1160 LGDPLQASYFSQKDDSYLEREPEVKRLFKDG-VEYKWFSHRVNKFTARQLSITTTNTFPG 1218

Query: 3728 TASDGKIW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFN 3901
              S  +I+  + S   SI+++  D E   ++LV S +EK +Y    RT+TFGE+QGLTF 
Sbjct: 1219 IDSQSQIYGDVQSAICSIQKTGIDVE---IILVASMIEKELYCNLGRTITFGESQGLTFG 1275

Query: 3902 HVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKI 4081
               +VLSE T   ++    VA+TR  +  SF +   G  D+++   K+ L          
Sbjct: 1276 VGVVVLSEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGA 1335

Query: 4082 NK--VKLQRMTRANLVFEDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEV 4243
            +K  +      + NL  + +K G GIDEMDREERLSGDP+LK  I+LG+R +     G+V
Sbjct: 1336 SKDFIMSSSSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLKSQIFLGKRFHLREPLGQV 1395

Query: 4244 VQIEP---ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIR 4414
            V +E    +C  P C       E           +R +E+RE++     + QF +     
Sbjct: 1396 VNLEDSAIKCHLPICNNQTLYVE--------LSKMRAREDREFKGKDGWSKQFREE---A 1444

Query: 4415 GPRCNDT--TVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGL 4588
            GP          PM F+AIYP+H   DD+TF+ A+KKRL F     N ++   +   G  
Sbjct: 1445 GPNWKSPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVANNYAKFKQSQSRGQY 1504

Query: 4589 LYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMK 4768
            L   F     +    +Q LL +CR +FE  KL KS ATI +HS RSD DW L+ +FLFMK
Sbjct: 1505 LLKVFLEHVNLKPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMK 1564

Query: 4769 SQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDD 4948
            SQLCTKFEK+F DAKAGQTLACFQH ILV+F+PWCRY+E  +    P+  YIH  +NF +
Sbjct: 1565 SQLCTKFEKRFEDAKAGQTLACFQHRILVEFSPWCRYVEKILTACTPDNFYIHQRKNFSE 1624

Query: 4949 LNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGC 5128
            L  + K+     ICVESDY AFD  QD  IL+FE+ L++  G+ ++++++Y+ +KC LGC
Sbjct: 1625 LENFAKRFSDGSICVESDYTAFDVSQDHTILAFEVELLRFIGWDEKILNSYIKMKCTLGC 1684

Query: 5129 KLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFE 5308
            +LG FA+MRFTGEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E
Sbjct: 1685 RLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREVSTHE 1744

Query: 5309 EIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIE 5488
             I +K+SLKAKV RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E
Sbjct: 1745 HILDKLSLKAKVNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLE 1804

Query: 5489 VSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 5617
             S+AY L ERL++ L+ E Q+ YHQ   RF V +   L+   R
Sbjct: 1805 FSFAYKLGERLFQYLEIE-QLNYHQVLARFFVKNSHLLRGSAR 1846



 Score =  117 bits (292), Expect = 1e-22
 Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 13/281 (4%)
 Frame = +2

Query: 140 NIEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 319
           N ++ N ++  RD  RY ++           S                 ++F HDEIH+W
Sbjct: 120 NYDIFNRLVTSRDKSRYGDLTQPTRVGGPKGS-----------------NYFIHDEIHYW 162

Query: 320 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 499
           S+  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I +  L + PDG  SE 
Sbjct: 163 SRTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES 222

Query: 500 YEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPGR-LHTESTFF 652
           Y Q     +L       FKNK   DG  K +++    +  +HH+F I P   L  +    
Sbjct: 223 YTQSIENGYLLSTNCISFKNK---DGLRKQYSVTLVYTLGSHHVFHIFPNMGLIEDEIRR 279

Query: 653 FNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDD 829
           F  +D+ D+  +FK   +     FP++     K++ Y+  LKKPD +S +AKLRQ+   +
Sbjct: 280 FGPYDLFDVGTLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQLCDAE 337

Query: 830 VEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 943
           + I+     ++  KR IE+G        F   L +H F K+
Sbjct: 338 ISIEAVFLIQEFAKR-IEKGGILSWSCSFFDYLKDHFFDKI 377


>ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
            gi|57639322|gb|AAW55581.1| 216 kDa protein [Apricot
            pseudo-chlorotic leaf spot virus]
          Length = 1892

 Score =  655 bits (1689), Expect = 0.0
 Identities = 428/1186 (36%), Positives = 636/1186 (53%), Gaps = 52/1186 (4%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG--DYNAALVQFYDEGSD 2422
            KG++  +      + Y HN + YP       + E I     D   D+NA+L+Q Y++GS 
Sbjct: 707  KGKKGGYFVLDYPMVYFHNNVSYPSFEATMKIKECILKARRDWNIDFNASLIQIYEKGSI 766

Query: 2423 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2602
            +G H+DNE+ Y DD +LT+N+ G A FS+     V  +E+ + + L+MP G QK+ +H V
Sbjct: 767  IGMHKDNEECYDDDGVLTLNVKGNATFSVSCHDNV--IELKEGNELLMPPGYQKKFKHGV 824

Query: 2603 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 2776
             + +  RIS+T R H RD S  S +  I+   D      C+I ++A  ++ D  ++   +
Sbjct: 825  KSESEGRISVTLRVHKRDFSFRSKVGFIKGKYD------CMISSLASLIRKDQDEMCAFV 878

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
             +       N    + G ++ D  ++  A +  + V  D   I V S G  L ++  R  
Sbjct: 879  PNV-----LNRCISNKGCSIDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNLRGN 933

Query: 2954 HYTLL-REFTNLPRSSFSHAQKKG---NVNVIKGLIEHISKVE-HYNAIQFNAEAEKFLK 3118
            H++++    +NL   + S + K     N +V     +    VE  Y   +   +  + +K
Sbjct: 934  HFSVVSSRRSNLDSLANSKSDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLLRAVK 993

Query: 3119 LRKSFLQRTTGIL--------------------------LGEVLDNGGKFFKEAHDLAIE 3220
            L KS  +  TGI+                          + + LD+    +KE  +L  E
Sbjct: 994  LLKSLNEGMTGIVSHNAAHEGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKERSNLIKE 1053

Query: 3221 TKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 3394
               ++   + + GFAGSGKS  +Q+ +    KG+   +VVCPR  L  DW  K G + +D
Sbjct: 1054 LNFINKTVYGVFGFAGSGKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEK-GVDSKD 1112

Query: 3395 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDW--LTFELTQMKSCAEVVLIFDPLQ 3568
               + TFE+ +K +    ++ I DE++L P GY+D   L   +  +   + ++ + DPLQ
Sbjct: 1113 ---IKTFESALKMDIKGKNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGDPLQ 1169

Query: 3569 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGK- 3745
            A Y +  D +IL  E ++  L  +  + Y + S+R+NK F A       M      D + 
Sbjct: 1170 ASYFSAKDDNILSKESEIKRLF-KDGVNYKWYSYRINK-FIASKLGVCGMNEFIGIDNQS 1227

Query: 3746 IWLVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSE 3925
            +     P +       K  P+V+LV S +EK +Y      +TFGE+QGLTF    IVLSE
Sbjct: 1228 VTYKDMPSAFHFMDSAKNHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIVLSE 1287

Query: 3926 STAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRM 4105
                 ++    VA+TR ++   F +   GG +D L + K  L +  +     ++  +  M
Sbjct: 1288 EAKLCSDAHIMVAITRFRKGFCFVLGSKGGKEDNLRTLKGGLLQRIVSNLGASREFITNM 1347

Query: 4106 TRANLVFED--MKFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP--- 4258
            +   L   +   K G GIDEMDREERL GD +LK  I+LG+R +     G+VV++E    
Sbjct: 1348 SSVPLKLSEKVTKKGAGIDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVELEDSAI 1407

Query: 4259 ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTT 4438
            +C  P C       E           I+ +E RE++     ++Q          R     
Sbjct: 1408 KCHIPVCSVQTLGPE--------LGRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKV 1459

Query: 4439 VGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFK 4618
               M  +AIYP+H   DD+TF  A+KKRL F    EN ++   +   G  L   F    +
Sbjct: 1460 NQAMSHEAIYPRHRMDDDLTFLAAIKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQ 1519

Query: 4619 IDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 4798
            I    +Q LL+ CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+
Sbjct: 1520 IKSGRNQSLLDLCRQEFEETKLSKSSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKR 1579

Query: 4799 FCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFM 4978
            F +AKAGQTLACFQH ILV+F+PWCRY E  +   LP+  Y+H  +NF +L ++ K+   
Sbjct: 1580 FTEAKAGQTLACFQHEILVKFSPWCRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFSN 1639

Query: 4979 RDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRF 5158
              +CVESDY AFD  QD  IL+FE+  ++  G+ +++I++Y+ +KC LGC+LG FA+MRF
Sbjct: 1640 GSVCVESDYTAFDVSQDHTILAFEVEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIMRF 1699

Query: 5159 TGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKA 5338
            TGEF TFLFNTLAN+AFT CRY+   G PI FAGDDMCAL ++    + E I EK+SLKA
Sbjct: 1700 TGEFSTFLFNTLANMAFTFCRYQVPSGTPICFAGDDMCALRDIKEIPNHEHILEKLSLKA 1759

Query: 5339 KVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSER 5518
            KV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE  ++ME +++Y +E S+AY L ER
Sbjct: 1760 KVNRTKVPMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMEVIDSYFLEFSFAYKLGER 1819

Query: 5519 LYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5650
            LY  L+ E Q+ YHQ   RF +   HL + ++K  +      S+ED
Sbjct: 1820 LYSYLEIE-QLNYHQVLTRFFIKNKHLLRGESKANISELIWLSDED 1864



 Score =  130 bits (327), Expect(2) = 3e-32
 Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 8/286 (2%)
 Frame = +2

Query: 125 REEXPNIEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHD 304
           R    N +++N ++  +D  RY   V                  GC K    + + F HD
Sbjct: 115 RSSVRNYDIINRLVVSKDKARYGPSVSPERV-------------GCPK----NSNLFIHD 157

Query: 305 EIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDG 484
           EIH+W+K  +  FL+  +PR L  ++V+PPEIL GY +S  P +Y F+I    L + PDG
Sbjct: 158 EIHYWNKGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLPDG 217

Query: 485 VTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVP-GRLHTES 643
           V SE Y QP  N + L  N   V+  KT    R+      S  +HHLF I P   L  E 
Sbjct: 218 VRSESYSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIPEE 277

Query: 644 TFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQII 820
           T  F  +D+ D+  +F    +     FP++     K++ YL  LKKPD +S +AKLRQ+ 
Sbjct: 278 TRRFGPYDLFDVGALFVKPVRVPIQDFPLS--TFKKIFIYLSSLKKPDEQSAVAKLRQLC 335

Query: 821 GDDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLP 958
             DV I+     ++  +R+ + G     +  +  EH+  +  + LP
Sbjct: 336 DSDVSIESVFLIQEFAQRVEKDGIQ--RWSCSFWEHIKDRFFDALP 379



 Score = 39.7 bits (91), Expect(2) = 3e-32
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISC 116
           L P  Y  HSHP  KTLENHIL +V+   ++  ++++C
Sbjct: 62  LSPYSYNVHSHPCCKTLENHILYNVAASYLSKYAYVAC 99


>gb|AGW07342.1| RNA polymerase [Apple chlorotic leaf spot virus]
          Length = 1878

 Score =  649 bits (1675), Expect = 0.0
 Identities = 434/1193 (36%), Positives = 630/1193 (52%), Gaps = 61/1193 (5%)
 Frame = +2

Query: 2255 RRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSDLG 2428
            RR+A+      + Y H+ + YP       + + II   D  G D+N+ALVQ Y++G  L 
Sbjct: 698  RRAAYFCLDFPMVYFHDKVSYPTFEATGPIRQAIINAKDKWGIDFNSALVQVYEDGCSLP 757

Query: 2429 YHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVHA 2608
             HRD+E+ Y DD ILT+N+ G AKF       +  +++   + ++MP G QK+ +H V  
Sbjct: 758  LHRDDEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQV 815

Query: 2609 YTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALES 2782
             +  R+S+T R H RD S  S +  ++   D      CL  +VAE +   P +V   +  
Sbjct: 816  MSEGRVSVTVRVHKRDFSFESKVRFVKGRLD------CLFSSVAEVIHKSPEEVMAFVPH 869

Query: 2783 FDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKGHY 2959
                  SN      G ++ D   + EA ++ LE   D   +   + G ++ ++  R  H+
Sbjct: 870  ILDRCISN-----RGCSIDDARAICEAYEIKLECEGDCGLVECGTVGLSVGRLLLRGNHF 924

Query: 2960 TLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAEKF 3112
             +     ++ RSS +            G+++H+    H          N+++     E+ 
Sbjct: 925  RV----ASVRRSSINSLANSSKEIKANGVLDHVMLHFHERLKEVEPDLNSVEVKVNLERA 980

Query: 3113 LKLRKSFLQRTTGI----------------------------LLGEVLDNGGKFFKEAHD 3208
             KL KS +   TGI                            + G+  D   +  ++   
Sbjct: 981  GKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRNFMKMIKGDTSDEKSEMLEKVQG 1040

Query: 3209 LAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGS 3382
            L    K V  ++    GFAGSGKS  +Q+ +    K +   ++VCPR  L  DW  K G 
Sbjct: 1041 LNFFKKKVYGIF----GFAGSGKSHAIQNLIYSEFKNSQGVLIVCPRKFLAKDWNEK-GV 1095

Query: 3383 EPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIF 3556
              RD   + TFE+ +K +     L ILDE++L P G+ D L  +L    +   + +V I 
Sbjct: 1096 NERD---IKTFESALKSDTKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKTSTIVCIG 1152

Query: 3557 DPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTAS 3736
            DPLQA Y    D   L  E ++  L  E  ++Y + S+R+NK F A+      M   T  
Sbjct: 1153 DPLQAGYFCPKDDGYLAKEGEITRLFKEG-IRYKWYSYRINK-FVAKKLGIETMNDFTGI 1210

Query: 3737 DGKIWLVSNPDSIRESFGD-KEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 3913
            D +  +  +  S      + K  P+V+LV S +EK +Y      +TFGE+QGLTFN   I
Sbjct: 1211 DQQSLIYKDMPSAHHFMKEGKNHPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGII 1270

Query: 3914 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4093
            VLSE     ++    VA+TR      F +   G  +D++ S KS L +        ++  
Sbjct: 1271 VLSEEAKLCSDAHIMVAITRFGRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASREF 1330

Query: 4094 LQRMTRANLVF--EDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEVVQIE 4255
            +   +   L+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++ 
Sbjct: 1331 ILSSSSVELILSEKDIAKGAGLDEMDRETRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLT 1390

Query: 4256 P---ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCD--SYNIRGP 4420
                +C  P C   + + E         + I+ +E RE++     ++QF +  S N + P
Sbjct: 1391 DSAIKCHIPMCSHQILMPE--------LEKIQAREYREFKGKNGWSNQFREEASSNWKFP 1442

Query: 4421 -RCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYN 4597
             R N      M F+A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L  
Sbjct: 1443 YRVNQA----MGFEAVYPRHRMDDDLTFLAAIKKRLRFDSIANNYAKFKAAESRGKYLAK 1498

Query: 4598 NFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQL 4777
             F +   I+   DQ LL++CR +FE  KL KS ATI  H+ RSD DW L+ +FLFMKSQL
Sbjct: 1499 IFLKHVPINCGRDQRLLDQCRQEFEETKLSKSAATIGVHAQRSDSDWPLDKIFLFMKSQL 1558

Query: 4778 CTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNR 4957
            CTKFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  
Sbjct: 1559 CTKFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELED 1618

Query: 4958 WVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLG 5137
            + K+      CVESDY AFD  QD  IL+FE+ L+K  G+ D ++ +Y+ +KC LGC+LG
Sbjct: 1619 FAKRFSNGSTCVESDYTAFDVSQDHTILAFEVELLKHFGWDDSILQSYIRMKCTLGCRLG 1678

Query: 5138 HFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIF 5317
             FA+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I 
Sbjct: 1679 GFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFIL 1738

Query: 5318 EKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSY 5497
             K+SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+
Sbjct: 1739 NKLSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSF 1798

Query: 5498 AYSLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5650
            AY L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1799 AYKLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1850



 Score =  119 bits (299), Expect = 2e-23
 Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
 Frame = +2

Query: 287 SFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRL 466
           + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEI  GY +S  P +Y F+I    L
Sbjct: 152 NIFIHDEIHYWSRAQLESFLAVHRPKNLWATLVFPPEIFAGYKSSVLPFLYQFEIHGKDL 211

Query: 467 FFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR 628
            + PDGV SE Y QP  N + L  +  LV   KT   +R+      S  +HHLF I P  
Sbjct: 212 VYMPDGVRSESYTQPLENGYLLSSSSILVQNKKTGAELRYQVSLIYSLGSHHLFHIFPTE 271

Query: 629 -LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLA 802
            L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S +A
Sbjct: 272 DLLKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVA 329

Query: 803 KLRQIIGDDVEIKEFLFFEQLCKRLIERG 889
           KLRQ+   D+ I+     ++   R+   G
Sbjct: 330 KLRQLSDADISIESVFMVQEFASRIERNG 358


>ref|YP_002308565.1| putative polyprotein [Peach mosaic virus] gi|75266362|gb|ABA18636.1|
            putative polyprotein [Peach mosaic virus]
          Length = 1886

 Score =  646 bits (1667), Expect = 0.0
 Identities = 428/1172 (36%), Positives = 635/1172 (54%), Gaps = 50/1172 (4%)
 Frame = +2

Query: 2252 GRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII--KICDPDGDYNAALVQFYDEGSDL 2425
            GRR+ ++     + Y HN + YP       + + I  K  D D  +NAALVQ Y +   +
Sbjct: 705  GRRAMYVCLDSAMVYFHNTISYPSIEAHGKIKDWILRKAKDYDVPFNAALVQVYRKDYTM 764

Query: 2426 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2605
            G H+DNE  Y ++PILTVN  G A FS +    V  + + D   L+MP   Q++ RH V 
Sbjct: 765  GMHKDNEACYGEEPILTVNAFGSAVFSTDCCNNV--INLEDGDELLMPAKFQRKFRHGVK 822

Query: 2606 AYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 2776
            + +  R+SIT R H RD S       E       K  CL +AV++ +  KS+ + ++   
Sbjct: 823  SLSEGRVSITLRVHSRDFSFE-----EKRKFVNGKFDCLFDAVSKLISKKSEEVMIRNP- 876

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
               D+   +       G  L D   +    ++ +E   D   + V S G  L +   R  
Sbjct: 877  HILDRCIMNR------GCDLDDLRSICNNYEIKVECQGDCGLLEVGSIGMPLGRFMLRGN 930

Query: 2954 HYTLL-REFTNLPRSSFSHAQKKGNVN------VIKGLIEHISKVE-HYNAIQFNAEAEK 3109
            H++L  +  +NL   S +++ K  +V+      V    ++ +  +E   N+ +   +  +
Sbjct: 931  HFSLCSKRRSNL--DSLANSVKDVSVSSCGIDYVQMKFLDRLRAIEPDLNSTKVKVDIRR 988

Query: 3110 FLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNL---------------- 3241
              KL K  ++  TGI+      +G +  K   + A    +VS +                
Sbjct: 989  GGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLVSAMRGSSAGIEKNKLMEEL 1048

Query: 3242 ---------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 3388
                      H + GFAGSGKS  +QD + K  +G+   +VVCPR  L  DW  K G + 
Sbjct: 1049 EELNFQQVSIHGIFGFAGSGKSHAIQDLISKEFRGSQGLMVVCPRKFLAKDWSEK-GVDD 1107

Query: 3389 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAE--VVLIFDP 3562
            +D   + TFE+ +K +     + ILDE+TL P G+ D L  ++    +  +  +V + DP
Sbjct: 1108 QD---IKTFESALKSDLKGKRVFILDEVTLLPRGFTDLLMMKIHMEGNLKKSTIVCLGDP 1164

Query: 3563 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 3742
            LQA Y ++ D   L+ E +V  L  E  ++Y + S+R+N+ F A+             D 
Sbjct: 1165 LQASYFSQKDESYLEREPEVKRLFPEG-VEYKWFSYRINR-FVARQLSITTRNEFPGIDN 1222

Query: 3743 KIWLVSN-PDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3919
            +  +  + P +I        + +V+LV S +EK +Y    +T+TFGE+QGLTF    IVL
Sbjct: 1223 QSQVYGDVPSAIHSIQKSGVKVEVILVASMIEKELYCNLCQTMTFGESQGLTFGVGIIVL 1282

Query: 3920 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4099
            SE     ++    VA+TR     S+ +   G  ++++   K+ L          +K  + 
Sbjct: 1283 SEEAKLCSDAHIMVAVTRFNRGFSYALGSKGTKEEYMRGIKNGLLSRLCSSIGASKDFIL 1342

Query: 4100 RMTRANLVFED--MKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4273
              +   L F +  ++ G G+DEMDREERLSGDP+LK  I+LG+R +  E +    + E+ 
Sbjct: 1343 SSSPIPLNFSEKMIQKGAGLDEMDREERLSGDPWLKTQIFLGKRFHLREPLGQVCQIEDS 1402

Query: 4274 RCQTHLFISEPNFAQCYNFDLIRLK--EEREYREDMLVTDQFCDSYNIRGPRCNDT--TV 4441
              + H+ +S     Q    +L R+K  E+RE++     ++QF +     GP         
Sbjct: 1403 AIKCHVPLSNQ---QTLYVELSRMKAREDREFKGRDGWSNQFREE---AGPNWKFPYKVA 1456

Query: 4442 GPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKI 4621
             PM F+AIYP+H   DD+TF+ A+KKRL F     N ++   +   G  L   F +   +
Sbjct: 1457 QPMNFEAIYPRHRMDDDITFYAAIKKRLRFDSVANNYTKFKQSQSRGQYLLQVFLKHVDL 1516

Query: 4622 DFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 4801
                +Q LL +C+ +FE  KL KS ATI +H+ RSD DW L+ +FLFMKSQLCTKFEK+F
Sbjct: 1517 KPSRNQALLNQCKQEFEETKLSKSAATIGAHAQRSDPDWPLDRIFLFMKSQLCTKFEKRF 1576

Query: 4802 CDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMR 4981
             DAKAGQTLACFQH ILV+F+PWCRY+E  +   LPE  YIH  +NF +L  + K++   
Sbjct: 1577 EDAKAGQTLACFQHKILVEFSPWCRYVEKILTSCLPENFYIHQRKNFSELEAFAKRYSDG 1636

Query: 4982 DICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFT 5161
             +CVESDY AFD  QD  IL+FE+ L++  G+ + V+++Y+ +KC LGC+LG FA+MRFT
Sbjct: 1637 SVCVESDYTAFDVSQDHTILAFEVELLRYIGWDEAVLNSYIKMKCTLGCRLGGFAIMRFT 1696

Query: 5162 GEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAK 5341
            GEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL      E I  K+SLKAK
Sbjct: 1697 GEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREIASHEHILNKLSLKAK 1756

Query: 5342 VERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 5521
            V RT  PMFCGWRL Q G++KEP L+Y R  +AIE G++++ +++Y +E S+AY L ERL
Sbjct: 1757 VNRTNVPMFCGWRLCQDGLIKEPCLIYERLNVAIENGRLLDVIDSYYLEFSFAYKLGERL 1816

Query: 5522 YEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 5617
            ++ L+ E Q+ YHQ   RF V +   L+   R
Sbjct: 1817 FQYLEIE-QLNYHQVLTRFFVKNSHLLRGGAR 1847



 Score =  121 bits (303), Expect(2) = 5e-28
 Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 8/258 (3%)
 Frame = +2

Query: 140 NIEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 319
           N +++N ++  RD  RY +           L+E  +   G K       ++F HDEIH+W
Sbjct: 120 NYDIINRLVTSRDKSRYGD-----------LTEPSRVG-GPKST-----NYFIHDEIHYW 162

Query: 320 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 499
           ++K +  FL    P+ L  ++V+PPEIL GY NS  P +Y F+I  D + F PDGV SE 
Sbjct: 163 TRKQLETFLELKSPKNLWVTMVFPPEILKGYKNSVLPFLYKFEIEGDNMVFMPDGVRSES 222

Query: 500 YEQPANLFWLFKNKYL--VDGDKTWTIVRHTSKY---AHHLFEIVPGRLHT--ESTFFFN 658
           Y QP    +L     +   D +K       T  Y   +HH+F I P +L T  +    F 
Sbjct: 223 YTQPIENGYLLSTNCISFTDSNKRKRQYSVTLVYTLGSHHVFHIFP-KLGTMEDEVRRFG 281

Query: 659 DFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVE 835
            +D+ D+  +FK   +     FP++     K++ YL  LKKPD +S +AKLRQ+  +++ 
Sbjct: 282 PYDLFDVGVLFKQPVRVPIQDFPLS--TFKKIFIYLSSLKKPDEQSAVAKLRQLCDNEIS 339

Query: 836 IKEFLFFEQLCKRLIERG 889
            +     ++  +R +E+G
Sbjct: 340 FEAVALIQEFARR-VEKG 356



 Score = 34.7 bits (78), Expect(2) = 5e-28
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISC 116
           L P  +  HSHP  KTLENHIL ++    ++   +I+C
Sbjct: 62  LSPFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIAC 99


>sp|P54891.1|RDRP_ACLSA RecName: Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
            protein; AltName: Full=ORF1 protein; AltName: Full=RNA
            replicase gi|453240|dbj|BAA03641.1| 216.5K protein [Apple
            chlorotic leaf spot virus]
          Length = 1885

 Score =  641 bits (1654), Expect = e-180
 Identities = 432/1191 (36%), Positives = 625/1191 (52%), Gaps = 57/1191 (4%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII-KICDPDG-DYNAALVQFYDEGSD 2422
            K R++A+      + Y H+ + YP       + +II +  D  G ++N+AL+Q Y++G  
Sbjct: 703  KNRKAAYFCIDYPMVYFHDKISYPTFEATGEIKQIIMRARDKWGANFNSALIQVYNDGCR 762

Query: 2423 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2602
            L  H DNE+ Y DD ILT+N+ G AKF     G + D+   D   ++MP G QK  +H V
Sbjct: 763  LPLHSDNEECYDDDEILTINVVGDAKFHTTCHGEIIDLRQGDE--ILMPGGYQKMNKHAV 820

Query: 2603 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 2776
               +  R S+T R H RD S  S +  I+   D      CL  ++AE +   P +V   +
Sbjct: 821  EVASEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSIAEIIHKKPEEVMMFI 874

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 875  PHIVDRCVSN-----RGCSLDDARAICEKYEIKIECEGDCGLVECGTIGLSVGRMLLRGN 929

Query: 2954 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAE 3106
            H+T+     ++ RSS              G+++H+    H             +   ++ 
Sbjct: 930  HFTV----ASVRRSSMDSLANSSKELKSNGVLDHVMFNFHKRLRSVEPDLTVEEIKVDSS 985

Query: 3107 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 3214
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 986  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMIKGKSEETRGDLFDRV 1045

Query: 3215 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 3388
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1046 QELNFMKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGVMVICPRRFLAKDWSEK-GVDE 1104

Query: 3389 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 3562
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1105 KD---IKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDP 1161

Query: 3563 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 3742
            LQA Y    D + L  E ++  L  +  + Y + S+R+NK F A+      M      D 
Sbjct: 1162 LQAGYFCPKDDNYLSREGEIKRLFKDG-VNYKWYSYRINK-FIAKKLAIETMNDFIGIDE 1219

Query: 3743 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3919
            +  +  +  S      +K    +V+LV S +EK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1220 QNLIYKDMPSAHHFMENKGNHIEVILVPSMIEKELYSNYGNVMTFGESQGLTFNCGVIVL 1279

Query: 3920 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4099
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1280 SEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFIL 1339

Query: 4100 RMTRANLVF--EDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP- 4258
              +   L+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++   
Sbjct: 1340 GSSSVKLILSEKDVSKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIVEPLGQVIKLTEN 1399

Query: 4259 --ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4423
              +C  P C +     E         D I+ +E RE++     ++QF +    N + P R
Sbjct: 1400 AIKCHIPVCSSQTLGPE--------LDNIQAREFREFKGKNGWSNQFREEAGPNWKHPYR 1451

Query: 4424 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 4603
             N      M ++AIYP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1452 VNQA----MSYEAIYPRHRMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLAKVF 1507

Query: 4604 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 4783
             R   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1508 LRHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1567

Query: 4784 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 4963
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1568 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFA 1627

Query: 4964 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 5143
            K+     +CVESDY AFD  QD  IL+FE+ L+K  G+ D+V+ +Y+ +KC LGC+LG F
Sbjct: 1628 KRFSNGSMCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKVLQSYIKMKCTLGCRLGGF 1687

Query: 5144 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 5323
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1688 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHECILSK 1747

Query: 5324 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 5503
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1748 LSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1807

Query: 5504 SLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5650
             L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1808 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1857



 Score =  121 bits (303), Expect = 6e-24
 Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 8/209 (3%)
 Frame = +2

Query: 287 SFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRL 466
           + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I    L
Sbjct: 152 NIFIHDEIHYWSRDQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDL 211

Query: 467 FFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR 628
            + PDGV SE Y QP  N F L  +  LV    T   +R+      S  +HHLF I P  
Sbjct: 212 VYMPDGVRSESYTQPLENGFLLSSSSILVRNKATGVEIRYQVSLVYSLGSHHLFHIYPTE 271

Query: 629 -LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLA 802
            L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S +A
Sbjct: 272 DLMKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVA 329

Query: 803 KLRQIIGDDVEIKEFLFFEQLCKRLIERG 889
           KLRQ+   D+ I+     ++   R+ + G
Sbjct: 330 KLRQLSDADISIESVFMVQEFASRVEKNG 358


>dbj|BAF64465.1| RNA polymerase [Apple chlorotic leaf spot virus]
          Length = 1877

 Score =  638 bits (1646), Expect = e-179
 Identities = 428/1189 (35%), Positives = 628/1189 (52%), Gaps = 57/1189 (4%)
 Frame = +2

Query: 2255 RRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSDLG 2428
            R++A+      + Y H+ + YP       + + II   +  G D+N+ALVQ Y++G +L 
Sbjct: 697  RKAAYFCLDFPLVYFHDKVSYPTFEATGPIKQAIINAKNKWGIDFNSALVQVYEDGCNLP 756

Query: 2429 YHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVHA 2608
             H+DNE+ Y DD ILT+N+ G AKF       +  +++   + ++MP G QK+ +H V  
Sbjct: 757  LHKDNEECYDDDGILTINVCGDAKFHTTCHDEI--IDLKQGNEILMPAGFQKRNKHAVQV 814

Query: 2609 YTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALES 2782
             +  R S+T R H RD S  S +  ++   D      CL  ++AE +   P +V   +  
Sbjct: 815  ISEGRTSVTMRVHKRDFSFESKVKFVKGRLD------CLFSSIAEVIHKKPEEVMAFVPH 868

Query: 2783 FDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKGHY 2959
                  SN      G ++ D   + EA ++ +E   D   +   S G ++ ++  R  H+
Sbjct: 869  ILDRCISN-----KGCSIDDARAICEAYEIKIECEGDCGLVECGSVGLSVGRLLLRGNHF 923

Query: 2960 TLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAEKF 3112
             +     ++ RSS              G+++H+    H          N+++     E+ 
Sbjct: 924  RV----ASVRRSSIDSLANSSKEIKANGVLDHVMFNFHDRLKAVEPDLNSVEVKVNLERA 979

Query: 3113 LKLRKSFLQRTTGILLGEVLDNGGKFFKEAH--------------DLAIETKVVSNLYHC 3250
             KL KS +   TGI+       G +  K  +              D + E   VS     
Sbjct: 980  GKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMKMIKDDDSNEKNEVSEKLQG 1039

Query: 3251 LT----------GFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 3394
            L           GFAGSGKS  +Q+ +    K +   +VVCPR  L  DW  K G   +D
Sbjct: 1040 LNFFKKKIYGIFGFAGSGKSHAIQNLIHSEFKNSQGILVVCPRKFLAKDWSEK-GVNEKD 1098

Query: 3395 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDPLQ 3568
               + TFE+ +K +     L ILDE++L P G+ D L  +L    +   + +V I DPLQ
Sbjct: 1099 ---IKTFESALKSDIKGKRLFILDEVSLLPKGFTDLLMLKLHMDGVLKVSTIVCIGDPLQ 1155

Query: 3569 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKI 3748
            A Y    D   L  + ++  L  E  +KY + S+R+N+ F A+      M   T  D + 
Sbjct: 1156 AGYFCPKDDGYLSKDGEITRLFKE-GVKYKWYSYRINR-FMAKKLGISTMNDFTGIDQQS 1213

Query: 3749 WLVSNPDSIRESFGD-KEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSE 3925
             +  +  S +    +    P+V+LV S +EK +Y      +TFGE+QGLTFN   IVLSE
Sbjct: 1214 LIYKDMPSAQHFLREGNNHPEVILVASMIEKELYSNYGNVMTFGESQGLTFNCGVIVLSE 1273

Query: 3926 STAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRM 4105
                 ++    VA+TR +    F +   G  +D++ S KS L +        +K  +   
Sbjct: 1274 EAKLCSDAHVMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFILNS 1333

Query: 4106 TRANLVF--EDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP--- 4258
            +   LV   +D+  G GIDEMDRE RL GD +LK  IYLG+R +     G+V+++     
Sbjct: 1334 SSVKLVLSEKDVAKGAGIDEMDREVRLEGDVWLKSMIYLGKRYHLVEPLGQVIKLTESAI 1393

Query: 4259 ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-RCN 4429
            +C  P C     + E         + I+ +E RE++     ++QF +    N + P + N
Sbjct: 1394 KCHIPVCSHQTLMPE--------LEKIQAREYREFKGRDGWSNQFREEAGPNWKFPYKVN 1445

Query: 4430 DTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKR 4609
                  M F+A+YP+H   DD+TF  A+KKRL F     N ++L  +   G  L   F +
Sbjct: 1446 QA----MNFEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKLKASENRGKYLAKVFLK 1501

Query: 4610 CFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKF 4789
               I    DQ LL++CR +FE  KL KS ATI +H+ RSD DW L+ +FLFMKSQLCTKF
Sbjct: 1502 HVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHAQRSDSDWPLDKIFLFMKSQLCTKF 1561

Query: 4790 EKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKK 4969
            EK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + ++
Sbjct: 1562 EKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFARR 1621

Query: 4970 HFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAV 5149
                 +CVESDY AFD  QD  IL+FE+ L++  G+ + ++ +Y+ +KC LGC+LG FA+
Sbjct: 1622 FSNGSMCVESDYTAFDVSQDHTILAFEVELLRHFGWDENILQSYIRMKCTLGCRLGGFAI 1681

Query: 5150 MRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKIS 5329
            MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL        I  K+S
Sbjct: 1682 MRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHNFILSKLS 1741

Query: 5330 LKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSL 5509
            LKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY L
Sbjct: 1742 LKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAYKL 1801

Query: 5510 SERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5650
             ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1802 GERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1849



 Score =  121 bits (303), Expect = 6e-24
 Identities = 75/209 (35%), Positives = 112/209 (53%), Gaps = 8/209 (3%)
 Frame = +2

Query: 287 SFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRL 466
           + F HDEIH+WS+  +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I    L
Sbjct: 152 NIFIHDEIHYWSRTQLESFLMVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDL 211

Query: 467 FFFPDGVTSEGYEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR 628
            + PDGV SE Y QP  N + L  +  LV   KT   +R+      S  +HHLF I P  
Sbjct: 212 VYMPDGVRSESYTQPLENGYLLSSSSILVHNKKTGVELRYQVSLVYSLGSHHLFHIFPTE 271

Query: 629 -LHTESTFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLA 802
            L  E    F  +D+ D+  +F    +     FP++     K++ YL  LKKPD++S +A
Sbjct: 272 DLLKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYLSSLKKPDVQSAVA 329

Query: 803 KLRQIIGDDVEIKEFLFFEQLCKRLIERG 889
           KLRQ+   D+ I+     ++   R+ + G
Sbjct: 330 KLRQLSDADISIESVFMVQEFASRIEKNG 358


>ref|NP_040551.1| replicase [Apple chlorotic leaf spot virus]
            gi|137259|sp|P27738.1|RDRP_ACLSP RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=216.5 kDa
            protein; AltName: Full=ORF1 protein; AltName: Full=RNA
            replicase gi|210294|gb|AAA42587.1| putative [Apple
            chlorotic leaf spot virus]
          Length = 1884

 Score =  635 bits (1637), Expect = e-178
 Identities = 427/1191 (35%), Positives = 624/1191 (52%), Gaps = 57/1191 (4%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII-KICDPDG-DYNAALVQFYDEGSD 2422
            +G+++A+      + Y H+ + YP       +  ++ K     G D+N+AL+Q Y++G  
Sbjct: 702  RGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIRHVMMKARSKWGIDFNSALIQVYNDGCR 761

Query: 2423 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2602
            L  H DNE+ Y DD ILT+N+ G AKF       V  +++   + ++MP G QK+ RH V
Sbjct: 762  LPLHSDNEECYDDDGILTINVVGDAKFHTTCHDEV--IDLKQGNEILMPAGYQKKNRHAV 819

Query: 2603 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 2776
               +  R S+T R H RD S  S +  I+   D      CL  +VAE +   P ++   +
Sbjct: 820  EVASEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSVAEIIHKKPEEIMMFI 873

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 874  PHIMDRCVSN-----RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGN 928

Query: 2954 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNA---------IQFNAEAE 3106
            H+++     ++ RSS              G+++H++   H                 ++ 
Sbjct: 929  HFSV----ASVRRSSMDSLANSSKEIKSDGVLDHVTFNFHKRLKLVEPDLTNADIKVDSS 984

Query: 3107 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 3214
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 985  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMNMVRGQIEEPKSDLFDKV 1044

Query: 3215 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 3388
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1045 QELNFMKVKIYGIFGFAGSGKSHAIQNLIQTEFKGSQGIMVICPRRFLAKDWSEK-GVDE 1103

Query: 3389 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 3562
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1104 KD---IKTFESALKSDVKGKRLFILDEISLLPKGFTDLLMLKMHMEGILKKSTIVCIGDP 1160

Query: 3563 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 3742
            LQA Y    D + L  E ++  L  +  + Y + S+R+NK F A+      M      D 
Sbjct: 1161 LQAGYFCPKDDNYLSREGEIKRLF-KGGVNYKWYSYRINK-FIAKKLAIETMNDFIGIDE 1218

Query: 3743 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3919
            +  +  +  S       K    +V+LV S VEK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1219 QSSIYKDMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVL 1278

Query: 3920 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4099
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1279 SEEAKLCSDAHIMVAITRFRRGFCFALGSKGSKEDYMRSMKSGLLQRICSGVGASKEFIL 1338

Query: 4100 RMTRANLVF--EDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEVVQIEPE 4261
              +  NL+   +D+  G GIDEMDRE RL GD +LK  IYLG+R +     G+V+++  +
Sbjct: 1339 GSSSVNLILSEKDIAKGAGIDEMDREARLEGDVWLKSMIYLGKRYHMVEPLGQVIKLTDD 1398

Query: 4262 ---CEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4423
               C  P C +     E         D I+ +E RE++     ++QF +    N + P +
Sbjct: 1399 AIKCHIPVCSSQTLGPE--------LDNIQAREYREFKGKNGWSNQFREEAGPNWKFPYK 1450

Query: 4424 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 4603
             N      M ++A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1451 VNQA----MSYEAVYPRHKMDDDLTFLAAIKKRLRFDNVANNYAKFKAAESRGKYLTKIF 1506

Query: 4604 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 4783
             +   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1507 LKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1566

Query: 4784 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 4963
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1567 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFSELEDFA 1626

Query: 4964 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 5143
            ++     ICVESDY AFD  QD  IL+FE+ L++  G+ D V+ +Y+ +KC LGC+LG F
Sbjct: 1627 RRFSNGSICVESDYTAFDVSQDHTILAFEVELLRHFGWDDRVLQSYIKMKCTLGCRLGGF 1686

Query: 5144 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 5323
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1687 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILSK 1746

Query: 5324 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 5503
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1747 LSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1806

Query: 5504 SLSERLYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5650
             L ERLY  L+ E Q+ YHQ   RF +   HL +  ++  +   E  S+ED
Sbjct: 1807 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHNISELEWLSDED 1856



 Score =  120 bits (302), Expect(2) = 9e-30
 Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 8/256 (3%)
 Frame = +2

Query: 146 EVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSK 325
           ++LN ++  +D  RY             L++  +    C K      + F HDEIH+WS+
Sbjct: 122 DILNRLVTAKDKARY-----------GPLAKPERSP--CPK----KTNIFIHDEIHYWSR 164

Query: 326 KSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYE 505
             +  FL   +P+ L  ++V+PPEIL GY +S  P +Y F+I    L + PDGV SE Y 
Sbjct: 165 DQLETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSESYT 224

Query: 506 QP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVPGR-LHTESTFFFNDF 664
           QP  N F L  +  ++    T   +R+      S  +HHLF I P   L  E    F  +
Sbjct: 225 QPLENGFLLSSSSIIIKNRVTGVEIRYQVSLVYSLGSHHLFHIYPAEDLMKEEVRRFGPY 284

Query: 665 DVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIK 841
           D+ D+  +F    +     FP++     K++ Y+  LKKPD++S +AKLRQ+   D+ I+
Sbjct: 285 DLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQLSDADISIE 342

Query: 842 EFLFFEQLCKRLIERG 889
                ++   R+ + G
Sbjct: 343 SVFMIQEFASRIEKNG 358



 Score = 40.8 bits (94), Expect(2) = 9e-30
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISC-PIKEKK 134
           L P  Y+ HSHP  KTLENH+L +V    ++  S+++C  IK  K
Sbjct: 62  LSPFAYVNHSHPGCKTLENHLLFNVVASYISKYSYVACLSIKSNK 106


>gb|AEY80037.1| polymerase [Apple chlorotic leaf spot virus]
          Length = 1883

 Score =  634 bits (1636), Expect = e-178
 Identities = 425/1191 (35%), Positives = 621/1191 (52%), Gaps = 57/1191 (4%)
 Frame = +2

Query: 2249 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG--DYNAALVQFYDEGSD 2422
            KG+++A+      + Y H+ + YP       + +++         ++N+ALVQ Y +G  
Sbjct: 701  KGKKAAYFCLDFPMVYFHDKVSYPTFEATGEIKQVMMRAKEKWGINFNSALVQVYSDGCR 760

Query: 2423 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2602
            L  H DNE+ Y DD ILT+N+ G AKF       + D++  +   ++MP G QK+ +H V
Sbjct: 761  LPLHSDNEECYDDDGILTINIKGDAKFHTTCHDEITDLKQGNE--ILMPAGYQKKNKHAV 818

Query: 2603 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 2776
               +  R S+T R H RD S  S +  I+   D      CL  ++AE +   P +V   +
Sbjct: 819  EVNSEGRTSVTLRVHKRDFSFESKLRFIKGKFD------CLFVSIAEIIHKKPEEVMMFI 872

Query: 2777 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2953
                    SN      G +L D   + E  ++ +E   D   +   + G ++ ++  R  
Sbjct: 873  PHIMDRCISN-----RGCSLDDAKAICEKYEIKIECEGDCGLVECGTSGLSIGRMLLRGN 927

Query: 2954 HYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH---------YNAIQFNAEAE 3106
            H+++     ++ RSS              G+++H++   H            +    ++ 
Sbjct: 928  HFSV----ASVRRSSMDSLANSSKEIKSNGVLDHVTFNFHKRLKLVEPDLTIVDVKVDSS 983

Query: 3107 KFLKLRKSFLQRTTGILLGEVLDNGGKFFK------------------------EAHDLA 3214
            +  KL KS +   TGI+       G +  K                        +  D  
Sbjct: 984  RAGKLLKSLMDGMTGIVSHNSTHEGWRMIKGINSTSEMRSFMSMVRGQSEEIKGDLFDKV 1043

Query: 3215 IETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEP 3388
             E   +    + + GFAGSGKS  +Q+ +    KG+   +V+CPR  L  DW  K G + 
Sbjct: 1044 QELNFMKVRIYGIFGFAGSGKSHAIQNLIQSEFKGSQGVMVICPRRFLAKDWNEK-GVDE 1102

Query: 3389 RDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ--MKSCAEVVLIFDP 3562
            +D   + TFE+ +K +     L ILDE++L P G+ D L  ++    +   + +V I DP
Sbjct: 1103 KD---IKTFESALKSDVKGKRLFILDEVSLLPKGFTDLLMLKMHMEGILRKSTIVCIGDP 1159

Query: 3563 LQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDG 3742
            LQA Y    D + L  E ++  L  E  + Y + S+R+NK F A+      M      D 
Sbjct: 1160 LQAGYFCPKDDNYLSREGEIKRLFKEG-VNYKWYSYRINK-FVAKKLAIETMNDFIGIDE 1217

Query: 3743 KIWLVSNPDSIRESFGDK-EQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3919
            +  +  +  S       K    +V+LV S VEK +Y      +TFGE+QGLTFN   IVL
Sbjct: 1218 QSSIYKDMPSAHHFMEKKGNHIEVILVASMVEKELYSNYGNVMTFGESQGLTFNCGVIVL 1277

Query: 3920 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQ 4099
            SE     ++    VA+TR +    F +   G  +D++ S KS L +        +K  + 
Sbjct: 1278 SEEAKLCSDAHIMVAVTRFRRGFCFALGSKGSKEDYMRSMKSGLLQRMCSGIGASKEFIL 1337

Query: 4100 RMTRANLVF--EDMKFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP- 4258
              +  NL+   +D+  G G+DEMDRE RL GD +LK  IYLG+R +     G+V+++   
Sbjct: 1338 GSSSVNLILSEKDITKGAGVDEMDREARLEGDVWLKSMIYLGKRYHIIEPLGQVIKLTDG 1397

Query: 4259 --ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSY--NIRGP-R 4423
              +C  P C +     E         D I+ +E RE++     ++QF +    N + P R
Sbjct: 1398 AIKCHIPVCSSQTLGPE--------LDRIQAREFREFKGKNGWSNQFREEAGPNWKFPYR 1449

Query: 4424 CNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNF 4603
             N      M ++A+YP+H   DD+TF  A+KKRL F     N ++   A   G  L   F
Sbjct: 1450 VNQA----MSYEAVYPRHKMDDDLTFLAAIKKRLRFDNAANNYAKFKAAESRGKYLAKVF 1505

Query: 4604 KRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCT 4783
             +   I    DQ LL++CR +FE  KL KS ATI +HS RSD DW L+ +FLFMKSQLCT
Sbjct: 1506 LKHVPIKCGRDQRLLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCT 1565

Query: 4784 KFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWV 4963
            KFEK+F +AKAGQTLACF H ILV+F+PWCRY E  +   LP+  YIH  +NF +L  + 
Sbjct: 1566 KFEKRFTEAKAGQTLACFPHKILVEFSPWCRYTEKVLTANLPDNYYIHQRKNFCELEDFA 1625

Query: 4964 KKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHF 5143
            ++      CVESDY AFD  QD  IL+FE+ L+K  G+ D+++ +Y+ +KC LGC+LG F
Sbjct: 1626 RRFSNGSTCVESDYTAFDVSQDHTILAFEVELLKHFGWDDKILQSYIKMKCTLGCRLGGF 1685

Query: 5144 AVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEK 5323
            A+MRFTGEF TFLFNTLAN+ FT CRYE  +G PI FAGDDMCAL NL      E I  K
Sbjct: 1686 AIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGDDMCALRNLREIDTHEFILNK 1745

Query: 5324 ISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAY 5503
            +SLKAKV RT+ PMFCGWRL   G++KEP L+Y R Q+AIE G++M+ +++Y +E S+AY
Sbjct: 1746 LSLKAKVNRTKVPMFCGWRLCCDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1805

Query: 5504 SLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQS--SEED 5650
             L ERLY  L+ E Q+ YHQ   RF + +   L+   R    E    S+ED
Sbjct: 1806 KLGERLYSHLEIE-QLNYHQVLTRFFIRNKHLLRGDSRHSISELEWLSDED 1855



 Score =  119 bits (298), Expect(2) = 1e-28
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 8/256 (3%)
 Frame = +2

Query: 146 EVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHWSK 325
           ++LN ++  +D  RY             L++  +    C K      + F HDEIH+WS+
Sbjct: 122 DILNRLVTAKDKARY-----------GPLAKPERSP--CPK----KTNVFIHDEIHYWSR 164

Query: 326 KSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEGYE 505
             +  FL  ++P+ L  ++V PPEIL GY +S  P +Y F+I    L + PDGV SE Y 
Sbjct: 165 DQLETFLQIYKPKNLWATLVSPPEILAGYKSSVLPFLYQFEIHGKDLVYMPDGVRSESYT 224

Query: 506 QPANLFWLFKNKYLVDGDKTWTI-VRHT-----SKYAHHLFEIVP-GRLHTESTFFFNDF 664
           QP    +L  +  ++  D+T  + VR+      S  +HHLF I P   L  E    F  +
Sbjct: 225 QPLENGYLLSSSSILVKDRTTGVEVRYQVSLTYSLGSHHLFHIYPTENLMKEEVRRFGPY 284

Query: 665 DVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIK 841
           D+ D+  +F    +     FP++     K++ Y+  LKKPD++S +AKLRQ+   D+ I+
Sbjct: 285 DLFDVGSLFVKPVRVPIQDFPLSV--FKKIFIYMSSLKKPDVQSAVAKLRQLSDADISIE 342

Query: 842 EFLFFEQLCKRLIERG 889
                ++   R+ + G
Sbjct: 343 SIFMVQEFASRIEKDG 358



 Score = 38.9 bits (89), Expect(2) = 1e-28
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 3   LFPNGYLPHSHPFSKTLENHILCDVSPGVVNADSFISC-PIKEKK 134
           L P  Y+ HSHP  KTLENH+L +V    ++   +++C  IK  K
Sbjct: 62  LSPFAYVNHSHPGCKTLENHLLFNVVASYISKYPYVACLSIKSNK 106