BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000031
         (7219 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...  3637   0.0  
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]       1216   0.0  
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v...   970   0.0  
ref|YP_227370.1| helicase [Strawberry latent ringspot virus]          946   0.0  
ref|YP_227372.1| protease [Strawberry latent ringspot virus]          495   e-136
gb|AAZ76594.1| polyprotein [Stocky prune virus]                       318   3e-83
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]...   311   2e-81
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]                   311   2e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270...   306   1e-79
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe...   301   4e-78
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523...   299   1e-77
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ...   296   1e-76
gb|AAY56484.1| unknown [Strawberry latent ringspot virus]             280   5e-72
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]         278   2e-71
dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus]                255   2e-64
gb|ACE06773.1| polyprotein [Radish mosaic virus]                      254   5e-64
gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]     253   7e-64
gb|AAX12375.1| polyprotein 1 [Broad bean wilt virus 1]                251   4e-63
gb|ADZ55760.1| polyprotein [Radish mosaic virus]                      251   4e-63
ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt v...   250   8e-63

>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 2227

 Score = 3637 bits (9430), Expect = 0.0
 Identities = 1780/2229 (79%), Positives = 1944/2229 (87%), Gaps = 20/2229 (0%)
 Frame = +1

Query: 184  MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 363
            MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 364  KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 543
            +NL+VE DR  +    ++ L   D+EM FMS+L  F   FS   IT           G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 544  YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 717
            Y  + I++A GL V +Y  FQ  +     R FL  DR  DAEVLT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 718  SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 897
            +FDYTGLGGD  KYRFD D L++D + GL RFVSAGFTE +K  G     L+ +D+D +T
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238

Query: 898  QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 1026
            QALSDEW EW+YFEED EE L E    ++     + A  QK                   
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 1027 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIVPVDQFYNKRFDLDFEDYCDTEYQKQ 1206
              P+SP  VL SA SY  GTKW YDS++EDY+P+ P+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 1207 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 1386
            P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 1387 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 1566
            D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 1567 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 1746
            NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 1747 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1926
            VWDLIIKAKD+AF  L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 1927 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 2106
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 2107 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 2283
            ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL  +KC+++K+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 2284 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 2463
            SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG 
Sbjct: 719  SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778

Query: 2464 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 2643
            KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779  KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838

Query: 2644 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 2823
            SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839  SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898

Query: 2824 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 3003
            DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR     
Sbjct: 899  DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958

Query: 3004 XXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGR 3183
                     EAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959  PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018

Query: 3184 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXX 3363
            YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF   
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078

Query: 3364 XXXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDP 3543
                     GF+ AGI +PF MLK + G  +TYY EEK  E+T  L+  DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138

Query: 3544 GVITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLE 3723
             +ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198

Query: 3724 QHKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTF 3903
              KRGF  + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258

Query: 3904 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXXYLLEASGSGAVEAKTQDVESELASLSKHL 4083
            A LGTM+ASGSLSSSQDQ             YLLEASG GA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318

Query: 4084 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 4263
            +GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378

Query: 4264 LGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEAD 4443
            +GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438

Query: 4444 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 4623
            YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498

Query: 4624 KIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGE 4803
            KIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558

Query: 4804 EFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLH 4983
            EFFDAETVFPEGLL PS APRQAT+SEI KSSIS  LE L GEKRKTEPAII NRDTRL 
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618

Query: 4984 DRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLN 5163
            DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI  KC LLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678

Query: 5164 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 5343
            GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D 
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738

Query: 5344 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 5523
            L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798

Query: 5524 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 5703
            N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858

Query: 5704 NQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 5883
                RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918

Query: 5884 TSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEF 6063
            +SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNKEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978

Query: 6064 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFH 6243
            NPPEKCDFLKRCFKARGDRYLAP          HWVRETN++NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038

Query: 6244 YGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRD 6423
            YGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE++V++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098

Query: 6424 SASDVAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRN 6603
            +ASDVAP VHIVP Q CLKW+  EVP VVWCGPNCPNQLRNA+ CF IQAPQGS+YPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158

Query: 6604 TVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 6783
            TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218

Query: 6784 ESTIAAKGW 6810
            E+  AAKGW
Sbjct: 2219 EAVTAAKGW 2227


>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
          Length = 675

 Score = 1216 bits (3147), Expect = 0.0
 Identities = 585/675 (86%), Positives = 621/675 (92%)
 Frame = +1

Query: 4786 GCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHN 4965
            GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS  LE L GEKRKTEPAII N
Sbjct: 1    GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60

Query: 4966 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLS 5145
            RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI  KC LLS
Sbjct: 61   RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120

Query: 5146 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 5325
            EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121  EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180

Query: 5326 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 5505
            ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181  ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240

Query: 5506 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 5685
            ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241  ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300

Query: 5686 TLLYNDNQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 5865
            T LY D    RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301  TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360

Query: 5866 EHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNK 6045
            EHMMAS+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNK
Sbjct: 361  EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420

Query: 6046 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGF 6225
            EILPEFNPPEKCDFLKRCFKARGDRYLAP          HWVRETN++NA ATQNNVEGF
Sbjct: 421  EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480

Query: 6226 LRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPE 6405
            LRELFHYGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE
Sbjct: 481  LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540

Query: 6406 VIVIRDSASDVAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGS 6585
            ++V++D+ASDVAP VHIVP Q CLKW+  EVP VVWCGPNCPNQLRNA+ CF IQAPQGS
Sbjct: 541  IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600

Query: 6586 KYPLRNTVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 6765
            +YPLR+TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601  RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660

Query: 6766 NDAGLLESTIAAKGW 6810
            ND GLLE+  AAKGW
Sbjct: 661  NDKGLLEAVTAAKGW 675


>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
          Length = 719

 Score =  970 bits (2507), Expect = 0.0
 Identities = 482/721 (66%), Positives = 564/721 (78%), Gaps = 20/721 (2%)
 Frame = +1

Query: 184  MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 363
            MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 364  KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 543
            +NL+VE DR  +    ++ L   D+EM FMS+L  F   FS   IT           G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 544  YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 717
            Y  + I++A GL V +Y  FQ  +     R FL  DR  DAEVLT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 718  SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 897
            +FDYTGLGGD  KYRFD D L++D + GL RFVSAGFTE +K  G     L+ +D+D +T
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238

Query: 898  QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 1026
            QALSDEW EW+YFEED EE L E    ++     + A  QK                   
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 1027 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIVPVDQFYNKRFDLDFEDYCDTEYQKQ 1206
              P+SP  VL SA SY  GTKW YDS++EDY+P+ P+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 1207 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 1386
            P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 1387 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 1566
            D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 1567 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 1746
            NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 1747 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1926
            VWDLIIKAKD+AF  L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 1927 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 2106
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 2107 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 2283
            ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL  +KC+++K+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 2284 S 2286
            S
Sbjct: 719  S 719


>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
          Length = 548

 Score =  946 bits (2445), Expect = 0.0
 Identities = 463/548 (84%), Positives = 492/548 (89%)
 Frame = +1

Query: 2287 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 2466
            GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1    GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60

Query: 2467 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 2646
            SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61   SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120

Query: 2647 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 2826
            RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121  RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180

Query: 2827 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 3006
            DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR      
Sbjct: 181  DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240

Query: 3007 XXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRY 3186
                    EAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241  LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300

Query: 3187 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXX 3366
            RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF    
Sbjct: 301  RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360

Query: 3367 XXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPG 3546
                    GF+ AGI +PF MLK + G  +TYY EEK  E+T  L+  DADII SRLDP 
Sbjct: 361  QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420

Query: 3547 VITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQ 3726
            +ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE 
Sbjct: 421  MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480

Query: 3727 HKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFA 3906
             KRGF  + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TFA
Sbjct: 481  SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540

Query: 3907 TLGTMKAS 3930
             LGTM+AS
Sbjct: 541  ALGTMRAS 548


>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
          Length = 257

 Score =  495 bits (1274), Expect = e-136
 Identities = 235/257 (91%), Positives = 252/257 (98%)
 Frame = +1

Query: 4015 GSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 4194
            G GA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1    GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60

Query: 4195 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAG 4374
            YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAG
Sbjct: 61   YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120

Query: 4375 SGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 4554
            SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121  SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180

Query: 4555 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASL 4734
            NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASL
Sbjct: 181  NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240

Query: 4735 LLGEIKHPLETDRIQAS 4785
            LLG+IKHPLETDRIQAS
Sbjct: 241  LLGDIKHPLETDRIQAS 257


>gb|AAZ76594.1| polyprotein [Stocky prune virus]
          Length = 795

 Score =  318 bits (814), Expect = 3e-83
 Identities = 214/609 (35%), Positives = 319/609 (52%), Gaps = 31/609 (5%)
 Frame = +1

Query: 4555 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITREEYL 4722
            + +     CG    A  G    G G+    + ++H  +  ++   +  G G+ +T+E+ +
Sbjct: 22   HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81

Query: 4723 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SNAPRQATTSEI 4887
               +LL         D +    CL   E        + V   G L+  S+AP  +  +++
Sbjct: 82   GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132

Query: 4888 RKSSISADLEILTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 5058
             +S IS  +++      +T PAII N D R+    +   D+F  GM KYK +A     V 
Sbjct: 133  ERSLISDIVDLPC----ETVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188

Query: 5059 -EEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5235
              +EQ+ +    D IFD      +    +SE+  L G+     +  +V STSEG+P +L 
Sbjct: 189  GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248

Query: 5236 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 5412
            R +G  GK   L G+PGC++++      +   +++  L    +P ++G++  KDER+   
Sbjct: 249  RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308

Query: 5413 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5592
            K+    KTRLFT+LP EYN LVR+YF  FV++ M+ HN  P KVGINP   +WT L + +
Sbjct: 309  KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368

Query: 5593 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR------RLHLMLAATTRL 5754
             +KGTNWFNGD+ RFDG+TPR +++++  RI  LY      R      R  LML A+ R 
Sbjct: 369  RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428

Query: 5755 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAST-------SLFFSDCVE 5913
             +AG  LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ ++              V 
Sbjct: 429  AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488

Query: 5914 LAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNP-PEKCDFL 6090
             AV GDDNLVSV +  +S +NL  +S+FL + G  LK+G  K++E  P F+P P  CDFL
Sbjct: 489  FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548

Query: 6091 KRCF-KARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE--LFHYGDKDL 6261
            KR F      R LAP          HWVR++        Q NV+G LRE   F     + 
Sbjct: 549  KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607

Query: 6262 YCKWRRDLI 6288
            +   RR L+
Sbjct: 608  FHDMRRKLL 616


>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
            gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
            spherical virus]
          Length = 2079

 Score =  311 bits (798), Expect = 2e-81
 Identities = 260/820 (31%), Positives = 395/820 (48%), Gaps = 38/820 (4%)
 Frame = +1

Query: 4045 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV-GSLTKT 4221
            D    + +L KH +   + ++    Y  IALG    L   HVW  + +  Y + G     
Sbjct: 1150 DQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAK 1208

Query: 4222 FPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS-SHDPFMAGSGWFM-EM 4395
                +N       +L  +DLV+V  P +   F  L  + +L + +  P +A +   + E 
Sbjct: 1209 NKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEP 1268

Query: 4396 LFRDNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFF 4566
            L+    V ++ ++   +  L    + D Y    L    +  C  YT   DT  G      
Sbjct: 1269 LYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLGSKPMPACYSYTF--DTFAGL----- 1321

Query: 4567 YVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLL--- 4737
                C +PL++  G G+ + +  +HV         D    G   ++T E++ + +     
Sbjct: 1322 ----CTSPLISMDG-GRCV-LLGLHVA-------GDKSKMGYAQIVTLEDFSDINFSEKV 1368

Query: 4738 -LGEIKHPLETDRIQASG--CLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISA 4908
              G  +  + T R ++ G  CL G ++   +  F E           + T  +    I  
Sbjct: 1369 GQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFLE---------NSSLTPSLIHDCIDI 1418

Query: 4909 DLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIW 5079
            D+         TEPAI+  +D RL   +++  D F  GM KY   A       +E+++++
Sbjct: 1419 DM--------TTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELF 1466

Query: 5080 DLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAG 5256
            +   D +F ++P      C  LS D+  NG+  D+   G+V+ T+EG+P    R  G  G
Sbjct: 1467 EDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTG 1523

Query: 5257 KERFLLGLPGCYTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 5430
            K     G PG + +  N  L     + +++ L       ++G+D  KDE++  SK+Y   
Sbjct: 1524 KTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQ 1582

Query: 5431 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5610
            KTRLFTILP++YN LVRKYF SFV++LM LHN +PTKVGI+P+  +W+IL   +H+KGTN
Sbjct: 1583 KTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTN 1642

Query: 5611 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 5751
            WFNGDYSRFDG+TPR +L  I +RI+  Y +             N    R  LM   +TR
Sbjct: 1643 WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTR 1702

Query: 5752 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCV 5910
             G+    L+ V+ GIPSGF LTVIVNSLVN F V +++  + +S    +L+    F   V
Sbjct: 1703 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLV 1762

Query: 5911 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6090
              AV GDDNL+SV +     FNL  +S  L + G TLK+G+DKN+EIL  F P EK DFL
Sbjct: 1763 SYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFL 1822

Query: 6091 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCK 6270
            KR F       +AP          HWVR+  + +A AT  N +  L E   +G  +LY  
Sbjct: 1823 KRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYN 1879

Query: 6271 WRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFE 6390
              R  I+   K +        +++    +L+G S A   +
Sbjct: 1880 DLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 1919



 Score = 68.2 bits (165), Expect = 5e-08
 Identities = 67/237 (28%), Positives = 96/237 (40%), Gaps = 10/237 (4%)
 Frame = +1

Query: 2506 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 2673
            DF  W   V      T  S+ L P +RL+ +R   D+             + K P   +T
Sbjct: 605  DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664

Query: 2674 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 2838
             F    Q L   L +C  ALS        R  P  I LY ++   GKS+    L + +LD
Sbjct: 665  EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720

Query: 2839 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 3018
            S++  +T R  +RN +  F + Y +Q   L D+FGA  +  + DE  ++           
Sbjct: 721  SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780

Query: 3019 XXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEGGRY 3186
                  K N   TS  +  TAN+    P   +      F  RR ILAEV   +G  Y
Sbjct: 781  MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPY 836


>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
          Length = 2235

 Score =  311 bits (798), Expect = 2e-81
 Identities = 253/772 (32%), Positives = 365/772 (47%), Gaps = 34/772 (4%)
 Frame = +1

Query: 4030 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 4203
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C     
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360

Query: 4204 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 4383
            G         +  +     +L  +DLVIV  P +   F  L  + +L +        +  
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420

Query: 4384 FM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4548
             +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T   
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475

Query: 4549 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEA 4728
                  Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ + 
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDV 1520

Query: 4729 SLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 4905
            +L     + P E     + S C        A T      LE +          +  S IS
Sbjct: 1521 ALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTT---------LIPSLIS 1571

Query: 4906 ADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQKI 5076
              +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ ++
Sbjct: 1572 TSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623

Query: 5077 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5253
            ++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R  G +
Sbjct: 1624 FEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680

Query: 5254 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5430
            GK     G PG + +     +   +   +  L       ++G+D  KDE++  SK+Y   
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740

Query: 5431 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5610
            KTRLFTILP++YN LVRKYF SFV+ +M  HN IP KVGI+ L  +W+IL  ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800

Query: 5611 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 5751
            WFNGDYSRFDG+TPR +L  I +RI   YN+             N    R  LM  A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860

Query: 5752 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSDCV 5910
             G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F   V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920

Query: 5911 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 6090
              A  GDDNLVSV +V    FNL K++  LA+ G TLK+G+DKN+EIL  F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980

Query: 6091 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6243
            KR F       +AP          HW+R+  +  A AT  N      E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031



 Score = 72.4 bits (176), Expect = 3e-09
 Identities = 65/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
 Frame = +1

Query: 2506 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2673
            DF  W  +V      T  S+ + P ERLK LR   D+ +       +     K P   +T
Sbjct: 766  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825

Query: 2674 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2850
             FN L   L  A     +A    + R  P  + LY ++   GKS+    L + +LD++  
Sbjct: 826  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885

Query: 2851 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3030
             +T R  +RN +  F + Y+++   L D+FGA  +  + DE  ++               
Sbjct: 886  PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945

Query: 3031 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3177
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 946  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994


>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
            gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            Contains: RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|50399319|emb|CAF21713.1| polyprotein
            [Cherry rasp leaf virus]
          Length = 2250

 Score =  306 bits (783), Expect = 1e-79
 Identities = 251/774 (32%), Positives = 366/774 (47%), Gaps = 36/774 (4%)
 Frame = +1

Query: 4030 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 4197
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C    Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375

Query: 4198 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGS 4377
                       +   + C   +L  +DLVIV  P +   F  L  + +L +        +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433

Query: 4378 GWFM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 4542
               +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T 
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490

Query: 4543 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYL 4722
                    Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ 
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533

Query: 4723 EASLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSS 4899
            + +L     + P E     + S C        A T      LE ++         +  S 
Sbjct: 1534 DVALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTS---------LIPSL 1584

Query: 4900 ISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQ 5070
            IS  +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ 
Sbjct: 1585 ISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636

Query: 5071 KIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 5247
            ++++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R  G
Sbjct: 1637 EVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693

Query: 5248 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 5424
             +GK     G PG + +     +   +   +   +  +   ++G+D  KDE++  SK+Y 
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753

Query: 5425 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 5604
              KTRLFTILP++YN LVRKYF S V+ +M  HN IP KVGI+ L  +W+IL  ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813

Query: 5605 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAAT 5745
            TNWFNGDYSRFDG+TPR +L  I +RI   YN+             N    R  L   A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873

Query: 5746 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSD 5904
            TR G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F  
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933

Query: 5905 CVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCD 6084
             V  A  GDDNLVSV +V    FNL K++  LA+ G TLK+G+DKN+EIL  F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993

Query: 6085 FLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6243
            FLKR F       +AP          HW+R+  +  A AT  N      E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046



 Score = 74.7 bits (182), Expect = 6e-10
 Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
 Frame = +1

Query: 2506 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2673
            DF  W  +V      T  S+ + P ERLK LR   D+ +       +     K P   +T
Sbjct: 781  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840

Query: 2674 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2850
             FN L   L  A     +A    + R  P  + LY ++   GKS+    L + +LD++  
Sbjct: 841  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900

Query: 2851 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3030
             +T R  +RN +  F + Y++Q   L D+FGA  +  + DE  ++               
Sbjct: 901  PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960

Query: 3031 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3177
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 961  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009


>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
          Length = 709

 Score =  301 bits (770), Expect = 4e-78
 Identities = 197/509 (38%), Positives = 280/509 (55%), Gaps = 26/509 (5%)
 Frame = +1

Query: 4942 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIF-DL 5109
            TEPAI+  +D RL   +++  D F  GM KY   A       +E++++++   D +F ++
Sbjct: 52   TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107

Query: 5110 PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 5289
            P      C  LS D+  NG+  D+   G+V+ T+EG+P    R  G  GK     G PG 
Sbjct: 108  PMFT---CEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164

Query: 5290 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
            + +  N  L     + +++ L       ++G+D  KDE++  SK+Y   KTRLFTILP++
Sbjct: 165  WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN LVRKYF SFV++LM LHN +PTKVGI+P+  +W+IL   +H+KGTNWFNGDYSRFDG
Sbjct: 224  YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283

Query: 5644 VTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTRLGVAGIGLYRV 5784
            +TPR +L  I +RI+  Y +             N    R  LM   +TR G+    L+ V
Sbjct: 284  ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343

Query: 5785 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCVELAVVGDDNLV 5943
            + GIPSGF LTVIVNSLVN F V +++  + +S    +L+    F   V  AV GDDNL+
Sbjct: 344  TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403

Query: 5944 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 6123
            SV +     FNL  +S  L + G TLK+G+DKN+EIL  F P EK DFLKR F       
Sbjct: 404  SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463

Query: 6124 LAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 6303
            +AP          HWVR+  + +A AT  N +  L E   +G  +LY    R  I+   K
Sbjct: 464  VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520

Query: 6304 NRVPHPTTYSFEELERSWLSGRSVASIFE 6390
             +        +++    +L+G S A   +
Sbjct: 521  VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549


>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
            polyprotein [Arracacha virus B]
          Length = 2314

 Score =  299 bits (765), Expect = 1e-77
 Identities = 254/793 (32%), Positives = 377/793 (47%), Gaps = 39/793 (4%)
 Frame = +1

Query: 4054 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 4227
            SEL S  KH+    +I   +  Y  + + G + L V HV+  +  G Y+  VG       
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288

Query: 4228 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDP--------FMAGSGW 4383
            F  NR   + + L  KDL IV    T   F  L   K LL   +         F   S  
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVPPFAPLA--KRLLFDEEEKLPRQALGFFCHSEP 1346

Query: 4384 FMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4563
            ++E L R +G+     ++ + T+ +  D+        + L K  +Y +    G       
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398

Query: 4564 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITRE-EYLEASLLL 4740
                 CG  L+       G+KI  +H     +   K +I   + ++  ++ E    S  +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446

Query: 4741 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEI 4920
            GE +  L         C +GE    A     EGL      P   T + +  S IS+DL+ 
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496

Query: 4921 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDL 5085
                   +   PAI+H+RD R+ +      D FK GMLKY   A       E+ Q   D 
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556

Query: 5086 TWDSIFDL-------PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5244
             +  I DL              CR+L+E++ LNG    +    +V  T+EG+P    R  
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616

Query: 5245 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 5421
            G++GK   L G+PG ++L ++ P+   I  + D L       ++G+D  KDE++  +K+ 
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676

Query: 5422 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5601
               K RLFTILP  YN +VR+++  FVA LM+ HN  P KVG+N    +W  L  ++ A 
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736

Query: 5602 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQ-----GSRRLHLMLA-------AT 5745
            G NWFNGDYSRFDG+TPRC+L  +A RI+  Y  ++       +++   +A       A 
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796

Query: 5746 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---STSLFFSDCVEL 5916
            +R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++  +M+    +  +F+  V  
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856

Query: 5917 AVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKR 6096
            AV GDDNLVSV E   + +NLK ++ FL  FG TLK+G++K++EIL  F P E  DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916

Query: 6097 CFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWR 6276
             F       L            HWVR+       A  +N    L E   +G  + Y   R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974

Query: 6277 RDLIDLCSKNRVP 6315
              L+ +  K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987



 Score = 63.2 bits (152), Expect = 2e-06
 Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
 Frame = +1

Query: 2497 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 2670
            V  DFQ W   V +    T  +  + P +RL+ LR   D  K    IL M     P    
Sbjct: 669  VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728

Query: 2671 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 2847
              F+    +L   + E  +A      R  P  I+LY      GKS C+  L + +LDS +
Sbjct: 729  RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788

Query: 2848 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 3027
              +  R+ +RN + S+ + Y +Q  ++ D+FGA  E     +  II              
Sbjct: 789  EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848

Query: 3028 XEAKGNTCCTSDFVFITANQAGLTPGA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 3204
                      S  +  T+N     P   + + K  F  RR I AEV A   G    ++ F
Sbjct: 849  AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908


>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
          Length = 707

 Score =  296 bits (757), Expect = 1e-76
 Identities = 189/476 (39%), Positives = 261/476 (54%), Gaps = 26/476 (5%)
 Frame = +1

Query: 4894 SSISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEE 5064
            S IS  +++    +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E
Sbjct: 40   SLISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DE 91

Query: 5065 EQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRK 5241
            + ++++   D +F ++P      C  L+ D+  NG+  D    G+V+ T+EG+P    R 
Sbjct: 92   DLEVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRP 148

Query: 5242 NGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKI 5418
             G +GK     G PG + +     +   +   +   +  +   ++G+D  KDE++  SK+
Sbjct: 149  AGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKV 208

Query: 5419 YQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHA 5598
            Y   KTRLFTILP++YN LVRKYF S V+ +M  HN IP KVGI+ L  +W+IL  ++ +
Sbjct: 209  YIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRS 268

Query: 5599 KGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLA 5739
            KGTNWFNGDYSRFDG+TPR +L  I +RI   YN+             N    R  L   
Sbjct: 269  KGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDM 328

Query: 5740 ATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FF 5898
            A+TR G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F
Sbjct: 329  ASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSF 388

Query: 5899 SDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEK 6078
               V  A  GDDNLVSV +V    FNL K++  LA+ G TLK+G+DKN+EIL  F P EK
Sbjct: 389  RQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEK 448

Query: 6079 CDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRE-LFH 6243
             DFLKR F       +AP          HW+R+  +  A AT  N      E LFH
Sbjct: 449  VDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503


>gb|AAY56484.1| unknown [Strawberry latent ringspot virus]
          Length = 173

 Score =  280 bits (717), Expect = 5e-72
 Identities = 130/164 (79%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
 Frame = +1

Query: 6436 VAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRN 6615
            VAP VHIVPVQ CLKW+  EVP VVWCGPNCPNQL+N + CF IQAPQGS+YPLRNTV+N
Sbjct: 3    VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62

Query: 6616 LLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTI 6795
            LLK+VHQR DEVYFTG+LNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+  
Sbjct: 63   LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122

Query: 6796 AAKGW*VVL-PS*AFLLENIPGPEGH*LGKPVNFLCHYHGSTWF 6924
            AAKGW   L  S  FL ENIPGP+GH LGKPVNF+CHYHG+TWF
Sbjct: 123  AAKGWCAFLFFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWF 166


>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
          Length = 2223

 Score =  278 bits (712), Expect = 2e-71
 Identities = 205/582 (35%), Positives = 302/582 (51%), Gaps = 27/582 (4%)
 Frame = +1

Query: 4855 NAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAV 5034
            N P + T   +RKS I   +  + G    TEP+I+ + D R      D + KG+ K+   
Sbjct: 1158 NVPHKTT---LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNET 1213

Query: 5035 AADMSPVTEE---EQKIWDLTWDSI-FDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVV 5202
            A      T E   +    DL  + +  D+PGG   K  + SE E LNG+ G+  Y  M +
Sbjct: 1214 ACCFDHETVEVALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDM 1270

Query: 5203 STSEGWPEVLNRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIV 5373
            ST+ G+P  L+    E GK +  +L G PG Y L+R+ P++   +++DE +    I  IV
Sbjct: 1271 STACGYPYTLS----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIV 1326

Query: 5374 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 5553
              + AKDERLPL KIYQ  KTRLFTILP  YN LVRKYF  F A LM+ HN +P KVGIN
Sbjct: 1327 SCECAKDERLPLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGIN 1386

Query: 5554 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR----R 5721
            P G +WT+L K         F+ DYS FDG  P  +       +   Y D  GS     R
Sbjct: 1387 PSGLEWTVLAKNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLAR 1446

Query: 5722 LHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM--------- 5874
              L++ A+  L + G  L+RV GG+PSGF+LTV+ NSL+N F +R+++E +         
Sbjct: 1447 HALLMMASNHLTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITR 1506

Query: 5875 -MASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEI 6051
             M  T   FS+ + +A+ GDDNLV+V  +    ++L  ++  L      +K+G DKN+++
Sbjct: 1507 TMGMTQRTFSE-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDV 1564

Query: 6052 LP-EFNPPEKCDFLKRCFKARG-DRYLAPXXXXXXXXXXHWVRETNVSNAV-ATQNNVEG 6222
               +F P  +  FL R F+      Y AP           W+R T  +  + A   N+EG
Sbjct: 1565 AQVQFQPLGELTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEG 1624

Query: 6223 FLRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS---GRSVASIFEK 6393
             LRE + +G K ++  +R  ++ + ++ R+P  T   FEELER W+S     +  ++ E 
Sbjct: 1625 SLREAYMHG-KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEP 1683

Query: 6394 EEPEVIVIRDSASDVAPGVHIVPVQQCLKWRAGEVPNVVWCG 6519
             E E++ +        P V  + V+Q  +     VP V +CG
Sbjct: 1684 SEHELLSL--------PTVEQLTVEQYSREINEFVPGVHFCG 1717



 Score = 91.7 bits (226), Expect = 5e-15
 Identities = 91/359 (25%), Positives = 145/359 (40%), Gaps = 16/359 (4%)
 Frame = +1

Query: 2608 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 2787
            KDKA     +     V       FN  +  LD+ L + Q    VG++R  P C+ LYG  
Sbjct: 344  KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403

Query: 2788 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 2967
              GK++   ++I+D+L+ L    T R++S +  D +WS Y +Q AVL DDFG + +  + 
Sbjct: 404  GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463

Query: 2968 DEA--EIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENR 3141
            ++   + I               E KG T  TS ++F+T+NQA       V    A + R
Sbjct: 464  NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522

Query: 3142 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3288
            R +L EV           T V+         FT+    +P+ R D      Y + L    
Sbjct: 523  RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576

Query: 3289 NQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXXGFRVAGIKVPFTMLKNLSGDQLTYYS 3468
               + H+++   L+                         GI+       + S D+LT   
Sbjct: 577  EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615

Query: 3469 EEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAY---VNLKNHFGLGTDPFE 3636
            +  M          D  I R      +I++  ++   + AY   +NL+N F +GT P E
Sbjct: 616  DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670


>dbj|BAG84602.1| RNA1-polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  255 bits (651), Expect = 2e-64
 Identities = 168/467 (35%), Positives = 249/467 (53%), Gaps = 16/467 (3%)
 Frame = +1

Query: 4948 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEQKIWDLTWDSIF 5103
            P+I+ N D RL        D FK G+LKYK     +       V EE ++ W    +   
Sbjct: 1202 PSILSNEDPRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEE-- 1259

Query: 5104 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 5283
                  G+    +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G  
Sbjct: 1260 ------GETFEEVSLEQAINGVKDVDYMDRIPLATSEGFPHILSRAHGEKGKIRFVEGDS 1313

Query: 5284 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
                L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPME
Sbjct: 1314 EEMMLIPGTSVSEALDIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 1373

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN LVR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG
Sbjct: 1374 YNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 1433

Query: 5644 VTPRCLLIEIARRITLLYNDNQGSRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 5817
            +  + ++  ++  I      N+ S+R   HL++A  +R  +    +++V  GIPSGF LT
Sbjct: 1434 LLSKQVMKAMSDMINNFCGGNESSKRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLT 1493

Query: 5818 VIVNSLVNHFLVRWSWEHMMAS------TSLFFSDCVELAVVGDDNLVSVKEVAASDFNL 5979
            VI NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV EV    F+ 
Sbjct: 1494 VICNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDG 1553

Query: 5980 KKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 6159
            K+L  FLA    T+ DG DK    L +F   E CDFLKR FK RG  + AP         
Sbjct: 1554 KRLKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQ 1612

Query: 6160 XHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCS 6300
             H+V   N+    A + N+   LRELF + DK+   + RR  +   S
Sbjct: 1613 LHYVNANNLEKHEAYKTNLVTVLRELFMW-DKNECAELRRKALQRIS 1658



 Score = 85.5 bits (210), Expect = 3e-13
 Identities = 88/346 (25%), Positives = 146/346 (42%), Gaps = 10/346 (2%)
 Frame = +1

Query: 2311 LLCPLSMFGVSKTLSCAKDLITIQGGQDA-AGRFFQDIVGGTQEVFYTLTGSKSEFLDYI 2487
            + C  ++  + KT      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKIFGMESRFLRDA 379

Query: 2488 YATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRL--ILQMDSRKVPG 2661
                  D   W  ++ E   +     +    + +K     K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPV 439

Query: 2662 AYITHFNNLLQSLDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVL 2835
               T    + +S+++ L E  CQ    V   RK P  ++ YG+S  GK++    LI D  
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 2836 DSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3015
            +     +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3016 XXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDR 3195
                 E KG     S F+F ++N    +P + +   +AF NRR +L  V  ++  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3196 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYTVNQSKQHFSEQ 3318
            + FT +Q  +    D+   V+      Y     Y + + ++H SEQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHESEQ 657


>gb|ACE06773.1| polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  254 bits (648), Expect = 5e-64
 Identities = 162/453 (35%), Positives = 243/453 (53%), Gaps = 16/453 (3%)
 Frame = +1

Query: 4948 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEQKIWDLTWDSIF 5103
            P+I+ + D RL        D FK G+LKYK     +       V EE ++ W    +   
Sbjct: 1202 PSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVLDNKLLIEVCEEIEQSWLDCKEE-- 1259

Query: 5104 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 5283
                  G+    +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G  
Sbjct: 1260 ------GETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDS 1313

Query: 5284 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
                L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPME
Sbjct: 1314 EAMMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 1373

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN LVR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG
Sbjct: 1374 YNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 1433

Query: 5644 VTPRCLLIEIARRITLLYNDNQGSRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 5817
            +  + ++  ++  I      ++ S+R   HL++A  +R  +    +++V  GIPSGF LT
Sbjct: 1434 LLSKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLT 1493

Query: 5818 VIVNSLVNHFLVRWSWEHMMAS------TSLFFSDCVELAVVGDDNLVSVKEVAASDFNL 5979
            VI NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV EV    F+ 
Sbjct: 1494 VICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDG 1553

Query: 5980 KKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 6159
            K+L  FLA    T+ DG DK    L +F   E CDFLKR FK RG  + AP         
Sbjct: 1554 KRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQ 1612

Query: 6160 XHWVRETNVSNAVATQNNVEGFLRELFHYGDKD 6258
             H+V   N+    A + N+   LRELF +  K+
Sbjct: 1613 LHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 1645



 Score = 82.8 bits (203), Expect = 2e-12
 Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 10/346 (2%)
 Frame = +1

Query: 2311 LLCPLSMFGVSKTLSCAKDLITIQGGQDA-AGRFFQDIVGGTQEVFYTLTGSKSEFLDYI 2487
            + C  ++  + KT      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 2488 YATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRL--ILQMDSRKVPG 2661
                  D   W  ++ E   +     +    + +K     K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQCLIKKGHDMRSKVLKVTSRISPV 439

Query: 2662 AYITHFNNLLQSLDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVL 2835
               T    + +S+++ L E  CQ    +   RK P  ++ YG+S  GK++    LI D  
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 2836 DSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3015
            +     +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3016 XXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDR 3195
                 E KG     S F+F ++N    +P + +   +AF NRR +L  V  ++  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3196 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYTVNQSKQHFSEQ 3318
            + FT +Q  +    D+   V+      Y     Y + + ++H +EQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQ 657


>gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]
          Length = 709

 Score =  253 bits (647), Expect = 7e-64
 Identities = 162/453 (35%), Positives = 243/453 (53%), Gaps = 16/453 (3%)
 Frame = +1

Query: 4948 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEQKIWDLTWDSIF 5103
            P+I+ + D RL        D FK G+LKYK     +       V EE ++ W    +   
Sbjct: 58   PSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEEIEQSWLDCKEE-- 115

Query: 5104 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 5283
                  G+    +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G  
Sbjct: 116  ------GETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDS 169

Query: 5284 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
                L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPME
Sbjct: 170  EAMMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 229

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN LVR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG
Sbjct: 230  YNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 289

Query: 5644 VTPRCLLIEIARRITLLYNDNQGSRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 5817
            +  + ++  ++  I      ++ S+R   HL++A  +R  +    +++V  GIPSGF LT
Sbjct: 290  LLSKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLT 349

Query: 5818 VIVNSLVNHFLVRWSWEHMMAS------TSLFFSDCVELAVVGDDNLVSVKEVAASDFNL 5979
            VI NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV EV    F+ 
Sbjct: 350  VICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDG 409

Query: 5980 KKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 6159
            K+L  FLA    T+ DG DK    L +F   E CDFLKR FK RG  + AP         
Sbjct: 410  KRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQ 468

Query: 6160 XHWVRETNVSNAVATQNNVEGFLRELFHYGDKD 6258
             H+V   N+    A + N+   LRELF +  K+
Sbjct: 469  LHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 501


>gb|AAX12375.1| polyprotein 1 [Broad bean wilt virus 1]
          Length = 1842

 Score =  251 bits (640), Expect = 4e-63
 Identities = 174/488 (35%), Positives = 254/488 (52%), Gaps = 11/488 (2%)
 Frame = +1

Query: 4858 APRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 5028
            AP     S  + S +   +E    +     P+I+   D RL    +   D F  GM KY 
Sbjct: 1170 APEHTVGSGGKTSYLETPVEWQLNKPCGKIPSILIKGDVRLAGTENADYDPFAVGMTKYA 1229

Query: 5029 AVAA--DMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVV 5202
              A   ++  + +  + I + TW    D     G +   +  +  LNG+     +  +V+
Sbjct: 1230 KEAGPFEVCGLDKVCESIVE-TWHDASD-----GFEFGPVDLETALNGIENMEYFDALVL 1283

Query: 5203 STSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLD 5382
            STSEG+P  L+RK GE GK R++ G PG   +  D  +   I   +E+  T +P +  ++
Sbjct: 1284 STSEGYPYRLDRKPGEKGKARYVEGEPGSMEIT-DERILADIHWFEEISKTQVPDLYCIE 1342

Query: 5383 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 5562
              KDERLP+ K+ ++ K+RLFT+LPM YN  VRK F +FV  +MK  +V+P +VGINP  
Sbjct: 1343 CVKDERLPIRKVLKEPKSRLFTVLPMSYNLAVRKKFLNFVRFIMKRRDVLPCQVGINPYS 1402

Query: 5563 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRR--LHLML 5736
              W  +  R+  KG +    DYSRFDG  P+C++++IA   + +  +   SR    +LML
Sbjct: 1403 RQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNVVGETGESREQTKNLML 1462

Query: 5737 AATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLF---FSDC 5907
            A  +R  + G  LYRV  GIPSGF LTVIVNS++N  L+++++     + SL    F   
Sbjct: 1463 ACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTH 1522

Query: 5908 VELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDF 6087
            V +AV GDDNL+SV E  +S FN   L  F+A+ G  + DG DK K I  EF   E CDF
Sbjct: 1523 VAMAVYGDDNLISVSEAISSRFNGNFLVNFMANLGIKVTDGVDKTK-IGIEFRTIENCDF 1581

Query: 6088 LKRCFKARGD-RYLAPXXXXXXXXXXHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLY 6264
            LKR FK   D  +             H+V+   V  + A  +N    LREL+   D    
Sbjct: 1582 LKRRFKENTDGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LEDPGKA 1640

Query: 6265 CKWRRDLI 6288
              +RR++I
Sbjct: 1641 ATFRREVI 1648



 Score = 82.4 bits (202), Expect = 3e-12
 Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 5/191 (2%)
 Frame = +1

Query: 2749 RKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVL 2928
            RKTP  ++  G S VGK+   Q +  + L   +   +  V+SRNG D FWS YK Q+ V 
Sbjct: 477  RKTPFMLFFTGKSGVGKTSVVQRMAANWLQQ-EQLGSNEVYSRNGLDPFWSGYKRQAVVT 535

Query: 2929 YDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPGA 3108
            YDDFGAV  G   +EAEII               + KG     S  +  ++N     P +
Sbjct: 536  YDDFGAV-PGNVSNEAEIINVVSSNPHSVMMADLKEKG-MYFDSRLIIASSNFLAANPES 593

Query: 3109 VVHCKKAFENRRLILAEVT-----AVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQF 3273
             VH  +A+E RR ++ +V+     A + G      R+TL     P++    F+   YE+ 
Sbjct: 594  GVHDSEAYERRRHVVVQVSLKEDVAYDPGNPCANQRYTLLDSKAPFAERAVFE--TYEEL 651

Query: 3274 LQYTVNQSKQH 3306
              +  N  K H
Sbjct: 652  WSHVYNAFKAH 662


>gb|ADZ55760.1| polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  251 bits (640), Expect = 4e-63
 Identities = 166/467 (35%), Positives = 248/467 (53%), Gaps = 16/467 (3%)
 Frame = +1

Query: 4948 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEQKIWDLTWDSIF 5103
            P+I+ N D RL        D FK G+LKYK     +       V EE ++ W    +   
Sbjct: 1202 PSILSNEDPRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEE-- 1259

Query: 5104 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 5283
                  G+    +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G  
Sbjct: 1260 ------GETFEEVSLEQAINGVKDVDYMDRIPLATSEGFPHILSRAHGEKGKVRFVEGDS 1313

Query: 5284 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
                L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPME
Sbjct: 1314 EEMMLIPGTSVSEALDIMEAQLEKEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 1373

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN  VR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG
Sbjct: 1374 YNLAVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 1433

Query: 5644 VTPRCLLIEIARRITLLYNDNQGSRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 5817
            +  + ++  ++  I      ++ S+R   HL++A  +R  +    +++V  GIPSGF LT
Sbjct: 1434 LLSKQVMKAMSDMINNFCGGSESSKRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLT 1493

Query: 5818 VIVNSLVNHFLVRWSWEHMMAS------TSLFFSDCVELAVVGDDNLVSVKEVAASDFNL 5979
            VI NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV EV    F+ 
Sbjct: 1494 VICNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVSEVIKPYFDG 1553

Query: 5980 KKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 6159
            K+L  FLA    T+ DG DK    L +F   E CDFLKR FK RG    AP         
Sbjct: 1554 KRLKEFLATLHITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYLDAPERKKSLWAQ 1612

Query: 6160 XHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCS 6300
             H+V   ++    AT+ N+   LRELF + DK+   + RR  +   S
Sbjct: 1613 LHYVNANHLEKHEATRTNLVTVLRELFMW-DKNECAELRRKALQRIS 1658



 Score = 84.0 bits (206), Expect = 9e-13
 Identities = 87/346 (25%), Positives = 146/346 (42%), Gaps = 10/346 (2%)
 Frame = +1

Query: 2311 LLCPLSMFGVSKTLSCAKDLITIQGGQDA-AGRFFQDIVGGTQEVFYTLTGSKSEFLDYI 2487
            + C  ++  + KT      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 2488 YATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRL--ILQMDSRKVPG 2661
                  D   W  ++ E   +     +    + +K     K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQALIKKGHDMRSKVLKVTSRISPV 439

Query: 2662 AYITHFNNLLQSLDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVL 2835
               T    + +S+++ L E  CQ    V   RK P  ++ YG+S  GK++    LI D  
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GVKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 2836 DSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 3015
            +     +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 3016 XXXXXEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDR 3195
                 E KG     S F+F ++N    +P + +   +AF NRR +L  V  ++  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 3196 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYTVNQSKQHFSEQ 3318
            + FT +Q  +    D+   V+      Y     Y + + ++H +EQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQ 657


>ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt virus 1]
          Length = 699

 Score =  250 bits (638), Expect = 8e-63
 Identities = 165/461 (35%), Positives = 238/461 (51%), Gaps = 14/461 (3%)
 Frame = +1

Query: 4948 PAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSP-----VTEEEQKIWDLTWDSIF 5103
            P+I+   D RL    +   D F  GM KY   A    P     V E   + W    D   
Sbjct: 57   PSILVKGDVRLAGTENADYDPFAVGMTKYAKEAGPFEPNGLDRVCESIAETWHDASDGFE 116

Query: 5104 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 5283
              P  +         +  LNG+     +  +V+STSEG+P  L+RK GE GK R++ G P
Sbjct: 117  FGPVDL---------EAALNGIENMEYFDALVLSTSEGYPYRLDRKPGEKGKARYVEGEP 167

Query: 5284 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5463
            G   +  D  +   I   +E+  T +P +  ++  KDERLP+ K+ ++ K+RLFT+LPM 
Sbjct: 168  GNLEIT-DERILADIHWFEEISKTQVPDLYCIECVKDERLPVRKVIKEPKSRLFTVLPMS 226

Query: 5464 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5643
            YN  +RK F +FV  +MK  +V+P +VGINP    W  +  R+  KG +    DYSRFDG
Sbjct: 227  YNLAIRKKFLNFVRFIMKRRDVLPCQVGINPYSRQWGKVADRLLEKGNSILCCDYSRFDG 286

Query: 5644 VTPRCLLIEIARRITLLYNDNQGSRR--LHLMLAATTRLGVAGIGLYRVSGGIPSGFALT 5817
              P+C++++IA   + +  +    R    +LMLA  +R  + G  LYRV  GIPSGF LT
Sbjct: 287  FLPKCIMVKIAEMFSNIVGETGAEREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLT 346

Query: 5818 VIVNSLVNHFLVRWSWEHMMASTSLF---FSDCVELAVVGDDNLVSVKEVAASDFNLKKL 5988
            VIVNS++N  L+++++     + SL    F   V + V GDDNL+SV E  +S FN   L
Sbjct: 347  VIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFL 406

Query: 5989 SAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGD-RYLAPXXXXXXXXXXH 6165
              F+ + G  + DG DK K +  EF   E CDFLKR FK   D  +             H
Sbjct: 407  VNFMCNLGIKVTDGVDKTK-VGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLH 465

Query: 6166 WVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLI 6288
            +V+   V  + A  +N    LREL+  G  +    +RR++I
Sbjct: 466  FVKAKKVEMSEAYISNCNNILRELW-LGSPEKAAAFRREVI 505