BLASTX nr result
ID: Rehmannia25_contig00000020
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00000020
(3726 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot... 1384 0.0
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v... 1072 0.0
gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus] 924 0.0
gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus] 924 0.0
gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus] 921 0.0
gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus] 918 0.0
gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus] 915 0.0
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la... 598 e-168
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ... 519 e-144
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ... 281 2e-72
gb|ABC58719.1| coat protein [Strawberry latent ringspot virus] g... 255 1e-64
gb|ABC58721.2| coat protein [Strawberry latent ringspot virus] 254 2e-64
gb|AAR99477.1| coat protein [Strawberry latent ringspot virus] g... 253 4e-64
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot... 236 6e-59
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot... 234 2e-58
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot... 232 8e-58
gb|AEF97400.1| coat protein [Strawberry latent ringspot virus] 222 8e-55
gb|AEF97401.1| coat protein [Strawberry latent ringspot virus] 221 2e-54
gb|AAY56484.1| unknown [Strawberry latent ringspot virus] 69 1e-08
>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 989
Score = 1384 bits (3583), Expect = 0.0
Identities = 683/994 (68%), Positives = 786/994 (79%)
Frame = -2
Query: 3386 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3207
M SFF RRS EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1 MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60
Query: 3206 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 3027
+ LKSL+ATT+T +A RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++
Sbjct: 61 NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120
Query: 3026 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2847
KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121 RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180
Query: 2846 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2667
IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181 IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240
Query: 2666 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2487
NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241 NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300
Query: 2486 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2307
VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP KC FHN+VGCPC QHT
Sbjct: 301 VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360
Query: 2306 GNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2127
G EASG HEELVPA+ GGTE FFSP+ + P +KFVGSHPFSFPINSNVG VYTL
Sbjct: 361 GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419
Query: 2126 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1947
P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420 PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479
Query: 1946 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1767
AL LQGTWFMPGRHDS +LT+ ELATP+G+ M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480 ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539
Query: 1766 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1587
LSL+L+V+ IG+G +F PLRQVV+D++LSTTT KGKA P D A
Sbjct: 540 LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599
Query: 1586 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1407
Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG E+ FA D+ E DAYR FGS+
Sbjct: 600 QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659
Query: 1406 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1227
VVDLRAHR+LRARVP LF V P T +G L+ V+LFTAPLHISD +K
Sbjct: 660 VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719
Query: 1226 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVP 1047
KGSV+VRYLGLED +Y++P TS+GRLNP TTLV ASG PV++VGT +W EP + R+P
Sbjct: 720 KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPPLFRLP 775
Query: 1046 LGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 867
LGL QR FRL+TI+KW SGFL+FP TPS H+P+ G FE +EQ PLMHRSQEN QW
Sbjct: 776 LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835
Query: 866 GTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 687
G+L Y+L+ R GAT Q VLP R + A +L I+ PCF++ TF ++P+ R+T
Sbjct: 836 GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895
Query: 686 SLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 507
L + TPP RW NTHFGATE Y RTCP WVLLQFP + + L VRD+SLWVE
Sbjct: 896 YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955
Query: 506 PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P + +RH +GGFP+ P P+PA YY+ENTF VG
Sbjct: 956 PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989
>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
Length = 890
Score = 1072 bits (2773), Expect(2) = 0.0
Identities = 544/832 (65%), Positives = 628/832 (75%)
Frame = -2
Query: 2999 DTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLGIGVLPLYEA 2820
DT EEEPKY V + V S S SNQIAGVVLLDGNR+TQE AVLGIGVLPLYEA
Sbjct: 11 DTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVLGIGVLPLYEA 68
Query: 2819 HSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRHNIADAHYLP 2640
HSHALF PRL I F +RLQLLTTFSD VLGGGSPAMSYSTISVVRHN+ DAH+LP
Sbjct: 69 HSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVRHNVRDAHFLP 127
Query: 2639 EPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKTVLTFENNMA 2460
EPLPYSK KEK GV+GLSNFQ AEIAPLQPARLTR ASYMPIQR+G KTVLTFE+N A
Sbjct: 128 EPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEKTVLTFEDNQA 186
Query: 2459 QIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHTGNTEASGNH 2280
++EQQP + RASFSF+ +SYGQQDRAALP KC FHN+VGCPC QHTG EASG H
Sbjct: 187 SLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQHTGEAEASGLH 246
Query: 2279 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2100
EELVPAS GGTE FFSP+ + P +KFVGSHPFSFPINSNVG VYTLP+I+TSLKD
Sbjct: 247 -EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 305
Query: 2099 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1920
TEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 306 TEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 365
Query: 1919 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1740
MPGRHDS +LT+ ELATP+G+ M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+
Sbjct: 366 MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 425
Query: 1739 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1560
IG+G +F PLRQVV+D++LSTTT KGKA P D AQ+YPSCSSS
Sbjct: 426 IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 485
Query: 1559 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1380
ILENHRYWKGTL LEV+FNLPAM GG E+ FA D+ E DAYR FGS+VVDLRAHR+
Sbjct: 486 ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRL 545
Query: 1379 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1200
LRA+VP LF V P T +G L+ V+LFTAPLHISD +K GSV+VRYL
Sbjct: 546 LRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKTGSVMVRYL 605
Query: 1199 GLEDLDYLEPATSIGRLNPKTTLVPNVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFR 1020
GLED +Y++P TS+GRLNP TTLV ASG PV++VGT +W EP + R+PLGL Q+ FR
Sbjct: 606 GLEDCEYIQPTTSLGRLNPATTLV----ASGAPVVQVGTSDWVEPLLFRLPLGLLQKRFR 661
Query: 1019 LMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTA 840
L+TI+KW SGFL+FP TPS H+P+ AG FE +EQ PLMHRSQEN QW G+L Y+L+
Sbjct: 662 LLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQWSGSLTYYLSI 721
Query: 839 RLEGATEQSVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFV 660
R GAT Q VLP R + A +L I+ PCF++ TF ++P+ R+T L
Sbjct: 722 RYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETIYLPTTDSIA 781
Query: 659 EFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVEP 504
+ TPP RW NTHFGATE Y RTCP WVLLQFP + + L VRD+SLWVEP
Sbjct: 782 SYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWVEP 833
Score = 33.1 bits (74), Expect(2) = 0.0
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 396 LFLGISLGEYPWPR 355
LFLGIS GEYPWPR
Sbjct: 873 LFLGISQGEYPWPR 886
>gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]
Length = 712
Score = 924 bits (2389), Expect = 0.0
Identities = 458/720 (63%), Positives = 539/720 (74%), Gaps = 3/720 (0%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP PQKC FHN+VGCPC QHTG E SG H EELVPAS GGTE FFSP+ + P +
Sbjct: 61 LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2016
KFVGSHPFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179
Query: 2015 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1836
AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+ M++D
Sbjct: 180 AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239
Query: 1835 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1665
NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G G EL +F PLRQVV+D+
Sbjct: 240 NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296
Query: 1664 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1485
+LSTTT KGKA P D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297 DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356
Query: 1484 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1305
G E+ FA ++ E DAYR FGS+VVDLRAHR+LRA+VP LF V
Sbjct: 357 GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416
Query: 1304 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1125
P T +G L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV
Sbjct: 417 PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475
Query: 1124 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 945
ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW SGFL+ P+TPS H+P+
Sbjct: 476 ---ASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532
Query: 944 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSK 765
AG FE +EQ PLMHRSQEN QW G+L Y+L+ R GAT Q VLP R + F A +L
Sbjct: 533 LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592
Query: 764 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 585
IL PCFV+ TF ++P+ +T L + TPP RW NTHFGATE Y RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652
Query: 584 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P WVLLQFP + + L VRDVSLWVEP+I YRH +GGFP+ P P PA YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712
>gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]
Length = 712
Score = 924 bits (2387), Expect = 0.0
Identities = 458/720 (63%), Positives = 538/720 (74%), Gaps = 3/720 (0%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP PQKC FHN+VGCPC QHTG E SG H EELVPAS GGTE FFSP+ + P +
Sbjct: 61 LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2016
KFVGSHPFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179
Query: 2015 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1836
AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+ M++D
Sbjct: 180 AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239
Query: 1835 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1665
NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G G EL +F PLRQVV+D+
Sbjct: 240 NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296
Query: 1664 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1485
+LSTTT KGKA P D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297 DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356
Query: 1484 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1305
G E+ FA ++ E DAYR FGS+VVDLRAHR+LRA+VP LF V
Sbjct: 357 GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416
Query: 1304 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1125
P T +G L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV
Sbjct: 417 PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475
Query: 1124 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 945
ASG PV++VGT +W EP R+PLGL Q+ FRL+TI+KW SGFL+ P+TPS H+P+
Sbjct: 476 ---ASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532
Query: 944 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSK 765
AG FE +EQ PLMHRSQEN QW G+L Y+L+ R GAT Q VLP R + F A +L
Sbjct: 533 LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592
Query: 764 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 585
IL PCFV+ TF ++P+ +T L + TPP RW NTHFGATE Y RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652
Query: 584 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P WVLLQFP + + L VRDVSLWVEP+I YRH +GGFP+ P P PA YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712
>gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]
Length = 712
Score = 921 bits (2381), Expect = 0.0
Identities = 455/720 (63%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP KC FHN+VGCPC QHTG E SG H E+LVPA+ GGTE FFSP+ V P +
Sbjct: 61 LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2016
KFVGSHPFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179
Query: 2015 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1836
AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+ M++D
Sbjct: 180 AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239
Query: 1835 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1665
NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G G EL +F PLRQVV+D+
Sbjct: 240 NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296
Query: 1664 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1485
+LSTTT KGKA P D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297 DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356
Query: 1484 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1305
G E+ FA ++ E DAYR FGS+VVDLRAHR+LRA+VP LF V
Sbjct: 357 GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416
Query: 1304 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1125
P T +G L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV
Sbjct: 417 PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475
Query: 1124 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 945
ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW SGFL+FP+TPS H+P+
Sbjct: 476 ---ASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532
Query: 944 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSK 765
G FE +EQ PLMHRSQEN QW G+L Y+L+ R GAT Q VLP R + F A +L
Sbjct: 533 LVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592
Query: 764 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 585
IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC
Sbjct: 593 ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652
Query: 584 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P WVLLQFP + + L VRD+SLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712
>gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]
Length = 712
Score = 918 bits (2372), Expect = 0.0
Identities = 453/720 (62%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMP+QR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1 PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP KC FHN+VGCPC QHTG E SG H E+LVPA+ GGTE FFSP+ + P +
Sbjct: 61 LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2016
KFVGSHPFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179
Query: 2015 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1836
AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+ M++D
Sbjct: 180 AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239
Query: 1835 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGELT---TFYPLRQVVLDY 1665
NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G G EL +F PLRQVV+D+
Sbjct: 240 NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296
Query: 1664 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1485
+LSTTT KGKA P D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297 DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356
Query: 1484 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1305
G E+ FA ++ E DAYR FGS+VVDLRAHR+LRA+VP LF V
Sbjct: 357 GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416
Query: 1304 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1125
P T +G L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P TS+GRLNP TTLV
Sbjct: 417 PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475
Query: 1124 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 945
ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW SGFL+FP+TPS H+P+
Sbjct: 476 ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532
Query: 944 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSK 765
AG FE +EQ PLMHRSQEN QW G+L Y+L+ R GAT Q VLP R + F A +L
Sbjct: 533 LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592
Query: 764 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 585
IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC
Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652
Query: 584 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P WVLLQFP + + L VRDVSLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712
>gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]
Length = 712
Score = 915 bits (2365), Expect = 0.0
Identities = 451/720 (62%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP KC FHN+VGCPC QHTG E SG H E+LVPA+ GGTE FFSP+ + P +
Sbjct: 61 LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 2016
KFVGSHPFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179
Query: 2015 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1836
AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+ M++D
Sbjct: 180 AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239
Query: 1835 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGELT---TFYPLRQVVLDY 1665
NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G G EL +F PLRQVV+D+
Sbjct: 240 NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296
Query: 1664 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1485
+LSTTT KGKA P D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297 DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356
Query: 1484 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1305
G E+ FA ++ E DAYR FGS+VVDLRAHR+LRA+VP LF V
Sbjct: 357 GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416
Query: 1304 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 1125
P T +G L+ V+LFTAPLHISD +KKGSV++R+LGLED +Y++P TS+GRLNP TTLV
Sbjct: 417 PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV- 475
Query: 1124 NVAASGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPR 945
ASG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW SGFL+FP+TPS H+P+
Sbjct: 476 ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532
Query: 944 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSK 765
AG FE +EQ PLMHRSQEN QW G+L Y+L+ R GAT + VLP R + F A +L
Sbjct: 533 LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDN 592
Query: 764 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTC 585
IL PCFV+ TF ++P+ R+T L + TPP RW NTHFGATE Y RTC
Sbjct: 593 ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652
Query: 584 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
P WVLLQFP + + L +RDVSLWVEP+I +RH +GGFP+ P P+P+ YY+ENTF VG
Sbjct: 653 PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712
>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
Length = 366
Score = 598 bits (1543), Expect = e-168
Identities = 294/366 (80%), Positives = 323/366 (88%)
Frame = -2
Query: 3386 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3207
M SFF RRS EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1 MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60
Query: 3206 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 3027
+ LKSL+ATT+T +A RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++
Sbjct: 61 NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120
Query: 3026 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2847
KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121 RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180
Query: 2846 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2667
IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181 IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240
Query: 2666 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2487
NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241 NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300
Query: 2486 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2307
VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP KC FHN+VGCPC QHT
Sbjct: 301 VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360
Query: 2306 GNTEAS 2289
G EAS
Sbjct: 361 GEAEAS 366
>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
Length = 388
Score = 519 bits (1337), Expect = e-144
Identities = 258/384 (67%), Positives = 299/384 (77%)
Frame = -2
Query: 2279 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2100
HEELVPA+ GGTE FFSP+ + P +KFVGSHPFSFPINSNVG VYTLP+I+TSLKD
Sbjct: 3 HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62
Query: 2099 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1920
TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63 TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122
Query: 1919 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1740
MPGRHDS +LT+ ELATP+G+ M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+
Sbjct: 123 MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182
Query: 1739 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1560
IG+G +F PLRQVV+D++LSTTT KGKA P D AQ+YPSCSSS
Sbjct: 183 IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242
Query: 1559 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1380
ILENHRYWKGTL LEV+FNLPAM GG E+ FA D+ E DAYR FGS+VVDLRAHR+
Sbjct: 243 ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302
Query: 1379 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1200
LRARVP LF V P T +G L+ V+LFTAPLHISD +KKGSV+VRYL
Sbjct: 303 LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362
Query: 1199 GLEDLDYLEPATSIGRLNPKTTLV 1128
GLED +Y++P TS+GRLNP TTLV
Sbjct: 363 GLEDCEYIQPTTSLGRLNPATTLV 386
>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
Length = 235
Score = 281 bits (719), Expect = 2e-72
Identities = 128/235 (54%), Positives = 161/235 (68%)
Frame = -2
Query: 1109 GGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 930
G PV++VGT +W EP + R+PLGL QR FRL+TI+KW SGFL+FP TPS H+P+ G F
Sbjct: 1 GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60
Query: 929 EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQSVLPHRSLTFSAVLLSKILPAP 750
E +EQ PLMHRSQEN QW G+L Y+L+ R GAT Q VLP R + A +L I+ P
Sbjct: 61 EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120
Query: 749 CFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 570
CF++ TF ++P+ R+T L + TPP RW NTHFGATE Y RTCP WVL
Sbjct: 121 CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180
Query: 569 LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 405
LQFP + + L VRD+SLWVEP + +RH +GGFP+ P P+PA YY+ENTF VG
Sbjct: 181 LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235
>gb|ABC58719.1| coat protein [Strawberry latent ringspot virus]
gi|84380737|gb|ABC58720.1| coat protein [Strawberry
latent ringspot virus]
Length = 165
Score = 255 bits (651), Expect = 1e-64
Identities = 119/166 (71%), Positives = 137/166 (82%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRA+
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP KC FHN+VGCPC QHTG EASG HEEL+PA+ GGTE FFSP+ + P +
Sbjct: 61 LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2058
KFVGSHPFSFPINSNVG VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165
>gb|ABC58721.2| coat protein [Strawberry latent ringspot virus]
Length = 165
Score = 254 bits (649), Expect = 2e-64
Identities = 119/166 (71%), Positives = 137/166 (82%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1 PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP P KC FHN+VGCPC QHTG TE+SG HEELVPAS GGTE FFSP+ + P +
Sbjct: 61 LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2058
KFVGS+PFSFPINSNVG VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120 KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165
>gb|AAR99477.1| coat protein [Strawberry latent ringspot virus]
gi|41745996|gb|AAS10194.1| coat protein [Strawberry
latent ringspot virus]
Length = 165
Score = 253 bits (646), Expect = 4e-64
Identities = 120/166 (72%), Positives = 137/166 (82%)
Frame = -2
Query: 2555 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2376
PLQPARLTR ASYMPI+R+G KTVLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAA
Sbjct: 1 PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60
Query: 2375 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2196
LP KC FHN+VGCPC QHTG EASG HEELVPA+ GGTE FFSP+ + P +
Sbjct: 61 LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119
Query: 2195 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2058
KFVGSHPFSFPINSNVG VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120 KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165
>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
Length = 152
Score = 236 bits (602), Expect = 6e-59
Identities = 111/153 (72%), Positives = 125/153 (81%)
Frame = -2
Query: 2534 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2355
TR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP PQ
Sbjct: 1 TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60
Query: 2354 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2175
KC FHN+VGCPC QHTG E SG HEELVPAS GGTE FFSP+ + P +KFVGSHP
Sbjct: 61 KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119
Query: 2174 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2076
FSFPINSNVG VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120 FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152
>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
gi|560369183|gb|AHB30926.1| coat protein, partial
[Strawberry latent ringspot virus]
Length = 152
Score = 234 bits (597), Expect = 2e-58
Identities = 110/153 (71%), Positives = 126/153 (82%)
Frame = -2
Query: 2534 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2355
TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP
Sbjct: 1 TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60
Query: 2354 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2175
KC FHN+VGCPC QHTG EASG HEELVPA+ GGTE FFSP+ + P +KFVGSHP
Sbjct: 61 KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119
Query: 2174 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2076
FSFPINSNVG VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120 FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152
>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
Length = 152
Score = 232 bits (592), Expect = 8e-58
Identities = 110/153 (71%), Positives = 125/153 (81%)
Frame = -2
Query: 2534 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2355
TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP
Sbjct: 1 TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60
Query: 2354 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2175
KC FHN+VGCPC QHTG EASG HEELVPA+ GGTE FFSP+ + P +K VGSHP
Sbjct: 61 KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119
Query: 2174 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2076
FSFPINSNVG VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120 FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152
>gb|AEF97400.1| coat protein [Strawberry latent ringspot virus]
Length = 148
Score = 222 bits (566), Expect = 8e-55
Identities = 103/147 (70%), Positives = 119/147 (80%)
Frame = -2
Query: 2510 IQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKV 2331
IQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP P KC FHN+V
Sbjct: 2 IQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRV 61
Query: 2330 GCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSN 2151
GCPC QHTG TE SG HEEL+PA+ GGTE FFSP+ + P +KFVGSHPFSFPINSN
Sbjct: 62 GCPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSN 120
Query: 2150 VGAVVYTLPIIKTSLKDTEWGRFYKGY 2070
VG VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 121 VGTTVYSLPLISTSLKDTEWGRYYRSY 147
>gb|AEF97401.1| coat protein [Strawberry latent ringspot virus]
Length = 146
Score = 221 bits (562), Expect = 2e-54
Identities = 102/146 (69%), Positives = 118/146 (80%)
Frame = -2
Query: 2507 QRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVG 2328
QR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP P KC FHN+VG
Sbjct: 1 QRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRVG 60
Query: 2327 CPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNV 2148
CPC QHTG TE SG HEEL+PA+ GGTE FFSP+ + P +KFVGSHPFSFPINSNV
Sbjct: 61 CPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSNV 119
Query: 2147 GAVVYTLPIIKTSLKDTEWGRFYKGY 2070
G VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 120 GTTVYSLPLISTSLKDTEWGRYYRSY 145
>gb|AAY56484.1| unknown [Strawberry latent ringspot virus]
Length = 173
Score = 69.3 bits (168), Expect = 1e-08
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -2
Query: 395 FS*AFLLENIPGPDGH*LGKPVNFVCHYHGFTWFIYFS 282
FS FL ENIPGPDGH LGKPVNFVCHYHG TWF F+
Sbjct: 133 FSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170