BLASTX nr result
ID: Rehmannia25_contig00000018
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00000018
(1209 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 593 e-167
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 590 e-166
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 588 e-165
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 585 e-164
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 585 e-164
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 584 e-164
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 584 e-164
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 584 e-164
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 582 e-164
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 530 e-148
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 445 e-122
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 278 3e-72
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 273 8e-71
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 261 4e-67
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 259 2e-66
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 259 2e-66
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 258 3e-66
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 256 2e-65
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 252 2e-64
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 248 4e-63
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 593 bits (1528), Expect = e-167
Identities = 300/403 (74%), Positives = 325/403 (80%), Gaps = 1/403 (0%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTI 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNC
Sbjct: 228 GHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF AS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRR 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNTRLRGPPGF +PFT+P PVNP+DA+T +FREF S T+ + LE S E+ +
Sbjct: 408 VNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVT 467
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
HTSLKV LS EQL ALHELG++R GGP+LP+ +N T
Sbjct: 468 HTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPK--------------------RSSNHT 507
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWL-PKLNALGFEALEIQTDP 1207
D + +T P + L K +GFEALEIQTDP
Sbjct: 508 HTSSDLLRRRHPRQQRSTNPPMGSLAAKAKRIGFEALEIQTDP 550
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 590 bits (1522), Expect = e-166
Identities = 299/402 (74%), Positives = 322/402 (80%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLTA T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRGPPGF +PFT+P PVNP+DA+T +F+ F A + +LE AE
Sbjct: 408 VNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETTLEQQAETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL++ LS QL ALH+LG+ R GGPLLP+ PD + A
Sbjct: 463 HQSLRLDCPTLSEHQLWALHKLGNARCGGPLLPQ-RPD-TSTVVEPCPDLPPETHAAPEP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
S + A P DP TLPWVAWLPKLNALGFEALEIQ DP
Sbjct: 521 SQRNTQAPNLPSPQDPTTLPWVAWLPKLNALGFEALEIQNDP 562
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 588 bits (1515), Expect = e-165
Identities = 298/402 (74%), Positives = 320/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +LE AE
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + L QL ALHELG+TR GGPLLP+ P + +
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK-GPAKLTTVEPCPDLPAENSANPEPP 521
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
D P DP TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 522 RKTTQTLD-LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 585 bits (1508), Expect = e-164
Identities = 294/402 (73%), Positives = 320/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEXTLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + + L QL ALHELG+ R GGPLLP+ +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 585 bits (1507), Expect = e-164
Identities = 294/402 (73%), Positives = 320/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + + L QL ALHELG+ R GGPLLP+ +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 584 bits (1505), Expect = e-164
Identities = 294/402 (73%), Positives = 319/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + L QL ALHELG+ R GGPLLP+ +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 584 bits (1505), Expect = e-164
Identities = 294/402 (73%), Positives = 319/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + L QL ALHELG+ R GGPLLP+ +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 584 bits (1505), Expect = e-164
Identities = 294/402 (73%), Positives = 319/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + L QL ALHELG+ R GGPLLP+ +E
Sbjct: 463 HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 582 bits (1501), Expect = e-164
Identities = 293/402 (72%), Positives = 319/402 (79%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTV
Sbjct: 168 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTV 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNC
Sbjct: 228 GHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNC 287
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS
Sbjct: 288 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 347
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 348 LDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRK 407
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+ +L +E
Sbjct: 408 VNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAF-----CQATATVEATLAQQSETPDE 462
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
H SL + + L QL ALHELG+ R G PLLP+ +E
Sbjct: 463 HQSLSLKCSTLPEHQLWALHELGNARCGAPLLPKGPAKLTRAEPCPDLPAEPQAVP--EP 520
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
++ + P DP+TLPWVAWLPKLNALGFEALEIQTDP
Sbjct: 521 PHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDP 562
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 530 bits (1364), Expect = e-148
Identities = 271/402 (67%), Positives = 299/402 (74%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV
Sbjct: 168 RLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 226
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
GHLTA PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNC
Sbjct: 227 GHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNC 286
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEITLLVNYFEFTA+
Sbjct: 287 RTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTAT 346
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 LDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRD 405
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
V T +RGPPGF NPFT+P PVNPEDAD F++FS ++ T+ LE SAE+
Sbjct: 406 VRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDH 465
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTT 1081
HT LKV + LS QL A+H LG +R GGPLLP + E ++A+
Sbjct: 466 HTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPA 525
Query: 1082 SNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
S+ D P +P TLPWVAWLPKLNALGFEALE+Q DP
Sbjct: 526 SSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDP 567
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 445 bits (1145), Expect = e-122
Identities = 242/408 (59%), Positives = 278/408 (68%), Gaps = 6/408 (1%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT
Sbjct: 168 KLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTA 227
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
G+L + + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N
Sbjct: 228 GYLISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANA 286
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+
Sbjct: 287 RTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVAN 346
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL WQP+ LEF V T
Sbjct: 347 LDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVST 406
Query: 722 VNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADSLEGSAENLAS 901
V R PPGF +P +P PVN DA T A A S P
Sbjct: 407 VLVHKRTPPGFRHPLCRPLPVNEVDALTTAA------CANQSLPLD-------------- 446
Query: 902 HTSLKVGHADLSTEQLRALHELGSTRLGGPLLPRIAPDEQDSE---XXXXXXXXXXXTKA 1072
+LS +QL ALH LGS R G LP +P + E TK
Sbjct: 447 ---------NLSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTPTISAAGPTKT 495
Query: 1073 NTTSNQGDHADQ---APVNSDPATLPWVAWLPKLNALGFEALEIQTDP 1207
T N A+ P+ DP TLPW AWLP L ALGFEA EIQTDP
Sbjct: 496 VPTPNVEVSANPLTGTPL-PDPDTLPWKAWLPHLRALGFEASEIQTDP 542
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 278 bits (711), Expect = 3e-72
Identities = 138/250 (55%), Positives = 179/250 (71%), Gaps = 6/250 (2%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ V
Sbjct: 170 KLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKV 229
Query: 182 GHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 349
G A++ +T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IFLP+
Sbjct: 230 GRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPK 289
Query: 350 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 529
++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVNYF
Sbjct: 290 QFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFL 349
Query: 530 FTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITL 703
A L S TCF++VLSG + ++L +P + +IQ+ F G F +L++AL+W +TL
Sbjct: 350 LIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTL 407
Query: 704 EFPVRTVNTR 733
+P +T + R
Sbjct: 408 TYPTKTFDNR 417
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 273 bits (699), Expect = 8e-71
Identities = 134/253 (52%), Positives = 172/253 (67%), Gaps = 12/253 (4%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL V
Sbjct: 168 KLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDV 227
Query: 182 GHLT--AANQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVT 325
G + N P +TAQR+ETKGANHLF+FQRG TP+ R+ T Y+T
Sbjct: 228 GLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYIT 287
Query: 326 VPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI 505
VP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+
Sbjct: 288 VPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDEL 347
Query: 506 TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALD 685
LL NYF + L S E+VL+G+L ++L RP++S + + G+P F +L++AL
Sbjct: 348 VLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALL 407
Query: 686 WQPITLEFPVRTV 724
W + L PVR V
Sbjct: 408 WTNVDLILPVRYV 420
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 261 bits (667), Expect = 4e-67
Identities = 131/242 (54%), Positives = 167/242 (69%), Gaps = 1/242 (0%)
Frame = +2
Query: 5 LQTLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
LQTL AT+VLP EA YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL V
Sbjct: 167 LQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRV 226
Query: 182 GHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNC 361
G + NQ ITAQR+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+K+N
Sbjct: 227 GRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNT 285
Query: 362 RTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTAS 541
R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F A
Sbjct: 286 RVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAK 345
Query: 542 LDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 721
DS TCF D+LSG+L ++L +PL + + F G P F KL+KAL WQ IT+ V
Sbjct: 346 QDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVAD 405
Query: 722 VN 727
+N
Sbjct: 406 IN 407
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 259 bits (662), Expect = 2e-66
Identities = 125/244 (51%), Positives = 169/244 (69%), Gaps = 4/244 (1%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL V
Sbjct: 170 KLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKV 229
Query: 182 GHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 349
G ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+
Sbjct: 230 GKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPK 289
Query: 350 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 529
KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 290 KYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYL 349
Query: 530 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 709
+ LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+W ++L +
Sbjct: 350 LISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSY 409
Query: 710 PVRT 721
V T
Sbjct: 410 KVET 413
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 259 bits (662), Expect = 2e-66
Identities = 125/244 (51%), Positives = 169/244 (69%), Gaps = 4/244 (1%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL V
Sbjct: 170 KLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKV 229
Query: 182 GHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 349
G ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+
Sbjct: 230 GKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPK 289
Query: 350 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 529
KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 290 KYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYL 349
Query: 530 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 709
+ LDS TCF++VL+G ++++L +P+ + G+ F +L++AL+W ++L +
Sbjct: 350 LISKLDSVTCFDNVLTGGVLKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSY 409
Query: 710 PVRT 721
V T
Sbjct: 410 KVET 413
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 258 bits (659), Expect = 3e-66
Identities = 125/244 (51%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL V
Sbjct: 170 KLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKV 229
Query: 182 GHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 349
G ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+
Sbjct: 230 GKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPK 289
Query: 350 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 529
KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 290 KYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYL 349
Query: 530 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 709
+ LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++L +
Sbjct: 350 LISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSLSY 409
Query: 710 PVRT 721
V T
Sbjct: 410 KVET 413
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 256 bits (653), Expect = 2e-65
Identities = 124/244 (50%), Positives = 167/244 (68%), Gaps = 4/244 (1%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV 181
KL TLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+WL V
Sbjct: 170 KLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKV 229
Query: 182 GHLTAANQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 349
G ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IFLP+
Sbjct: 230 GKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPK 289
Query: 350 KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 529
KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VNY+
Sbjct: 290 KYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYL 349
Query: 530 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 709
+ LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++L +
Sbjct: 350 LISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSY 409
Query: 710 PVRT 721
V T
Sbjct: 410 RVET 413
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 252 bits (644), Expect = 2e-64
Identities = 130/268 (48%), Positives = 174/268 (64%), Gaps = 10/268 (3%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYD 160
K+QT+ AT+VLP EALY L SLYP +Y+L+Y + F Y PGGH GA Y H+
Sbjct: 168 KIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELK 227
Query: 161 QLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 340
Q++WL GH+ + ITAQ+LETK ANHLFI++RG Y TPE R F T YVT+P IF
Sbjct: 228 QIDWLRFGHIIDG-KVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIF 286
Query: 341 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 520
LP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI LVN
Sbjct: 287 LPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVN 346
Query: 521 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 700
YF F A + T F+ +L G++I+++ RP+ + + Q G F +L++AL W I
Sbjct: 347 YFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEID 406
Query: 701 LE---FPVRTVNTRLRGPPGFHNPFTKP 775
L PV+T + R G ++PFT P
Sbjct: 407 LTLDVLPVKTHDWRRMGVADSNDPFTYP 434
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 248 bits (633), Expect = 4e-63
Identities = 125/257 (48%), Positives = 166/257 (64%), Gaps = 6/257 (2%)
Frame = +2
Query: 2 KLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIPGGHAGASYFHKYDQ 163
+L+TL AT+VLP EA + L S+YP IYTL Y F Y PGGH GA Y H+ Q
Sbjct: 168 QLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAPGGHKGAEYVHELKQ 227
Query: 164 LEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFL 343
L+WL+VG LT TITAQ++ETK ANHLFIFQRG+ +TP R F+T +VT+P IFL
Sbjct: 228 LDWLSVGRLTDG-VTTITAQKIETKAANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFL 286
Query: 344 PEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNY 523
PEK+N R PI KT++MQMF Y+K VK+ ERDIWAK+RQLI T++LQ + E+ L NY
Sbjct: 287 PEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNY 346
Query: 524 FEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 703
F F S CF+DVL G + R +P+++ + V Q G FV+L++AL+W + L
Sbjct: 347 FVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDL 406
Query: 704 EFPVRTVNTRLRGPPGF 754
+ + + + R GF
Sbjct: 407 KLDTKNYDFKRREGNGF 423