BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000012
         (1320 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 662   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   661   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   659   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   658   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   657   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   657   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   657   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   656   0.0  
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   655   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   594   e-167
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   492   e-136
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   318   3e-84
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   309   2e-81
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               295   3e-77
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   291   4e-76
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             288   5e-75
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 284   7e-74
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   283   9e-74
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   283   9e-74
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 282   2e-73

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  662 bits (1707), Expect = 0.0
 Identities = 335/439 (76%), Positives = 361/439 (82%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVN
Sbjct: 370  LRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T  +FREF      S   T+ + LE S E+  +HTSLKV    LS EQL ALHEL
Sbjct: 430  PDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHEL 489

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN+R GGP+LPK +                  T  S+ L +  H    P        P  
Sbjct: 490  GNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQQRSTNPPMG 530

Query: 58   AWLPKLNALGFEALEIQTD 2
            +   K   +GFEALEIQTD
Sbjct: 531  SLAAKAKRIGFEALEIQTD 549


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  661 bits (1706), Expect = 0.0
 Identities = 336/443 (75%), Positives = 362/443 (81%), Gaps = 4/443 (0%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            L+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   + T+       +LE  AE    H SL +    L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLP----KITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPAT 71
            GNTR GGPLLP    K+T  E   +          P + +        T  +P   DP T
Sbjct: 485  GNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLDLPHPEDPTT 538

Query: 70   LPWVAWLPKLNALGFEALEIQTD 2
            LPWVAWLPKLNALGFEALEIQTD
Sbjct: 539  LPWVAWLPKLNALGFEALEIQTD 561


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  659 bits (1699), Expect = 0.0
 Identities = 331/439 (75%), Positives = 359/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R GGPLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  658 bits (1698), Expect = 0.0
 Identities = 331/439 (75%), Positives = 359/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R GGPLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  657 bits (1696), Expect = 0.0
 Identities = 331/439 (75%), Positives = 358/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +    L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R GGPLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  657 bits (1696), Expect = 0.0
 Identities = 331/439 (75%), Positives = 358/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +    L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R GGPLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  657 bits (1696), Expect = 0.0
 Identities = 331/439 (75%), Positives = 358/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +    L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R GGPLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  656 bits (1692), Expect = 0.0
 Identities = 330/439 (75%), Positives = 358/439 (81%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETKGAN
Sbjct: 190  YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370  LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T ++F+ F   +      T+  +L   +E    H SL +  + L   QL ALHEL
Sbjct: 430  PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            GN R G PLLPK  P +  R                   ++   +  +P   DP+TLPWV
Sbjct: 485  GNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALEIQTD
Sbjct: 543  AWLPKLNALGFEALEIQTD 561


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  655 bits (1690), Expect = 0.0
 Identities = 330/440 (75%), Positives = 357/440 (81%), Gaps = 1/440 (0%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            Q+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130  QETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            +PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TAQRLETKGAN
Sbjct: 190  HPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGAN 249

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRP 369

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
            L S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVN
Sbjct: 370  LTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVN 429

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            PDDA+T  +F+ F   +       +  +LE  AE    H SL++    LS  QL ALH+L
Sbjct: 430  PDDAETTHSFQAFCQAA-----AAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHKL 484

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQ-GDHTDQVPVNSDPATLPW 62
            GN R GGPLLP+                    T A+   +Q       +P   DP TLPW
Sbjct: 485  GNARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPW 541

Query: 61   VAWLPKLNALGFEALEIQTD 2
            VAWLPKLNALGFEALEIQ D
Sbjct: 542  VAWLPKLNALGFEALEIQND 561


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  594 bits (1531), Expect = e-167
 Identities = 302/439 (68%), Positives = 339/439 (77%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            Q+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPPE     RSL
Sbjct: 130  QETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSL 188

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 959
            YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA   PT+TAQRLETKGAN
Sbjct: 189  YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGAN 248

Query: 958  HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 779
            HLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA
Sbjct: 249  HLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEA 308

Query: 778  KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 599
            +      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    L  +    
Sbjct: 309  QREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPA 367

Query: 598  LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 419
                I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVN
Sbjct: 368  PPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVN 427

Query: 418  PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 239
            P+DAD    F++FS  + ++   T+   LE SAE+   HT LKV  + LS  QL A+H L
Sbjct: 428  PEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHAL 487

Query: 238  GNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNSDPATLPWV 59
            G++R GGPLLP++T +    E           ++AS A +     D  P   +P TLPWV
Sbjct: 488  GHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWV 547

Query: 58   AWLPKLNALGFEALEIQTD 2
            AWLPKLNALGFEALE+Q D
Sbjct: 548  AWLPKLNALGFEALEVQHD 566


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  492 bits (1267), Expect = e-136
 Identities = 263/447 (58%), Positives = 310/447 (69%), Gaps = 9/447 (2%)
 Frame = -3

Query: 1315 DTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 1136
            DTVI  +  I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLY
Sbjct: 131  DTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLY 190

Query: 1135 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 956
            P++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + +  T+TAQRLETKGANH
Sbjct: 191  PEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGANH 249

Query: 955  LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 776
            LFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSVKE +
Sbjct: 250  LFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECR 309

Query: 775  ERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPL 596
            ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP 
Sbjct: 310  ERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPA 369

Query: 595  RSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNP 416
            R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P PVN 
Sbjct: 370  RVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNE 429

Query: 415  DDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELG 236
             DA T  A                            ++ SL + +  LS +QL ALH LG
Sbjct: 430  VDALTTAA---------------------------CANQSLPLDN--LSEDQLEALHVLG 460

Query: 235  NTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNS--------- 83
            + R  G  LP  +P +   E           T ++A   +   T  V V++         
Sbjct: 461  SLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPNVEVSANPLTGTPLP 514

Query: 82   DPATLPWVAWLPKLNALGFEALEIQTD 2
            DP TLPW AWLP L ALGFEA EIQTD
Sbjct: 515  DPDTLPWKAWLPHLRALGFEASEIQTD 541


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  318 bits (815), Expect = 3e-84
 Identities = 156/291 (53%), Positives = 200/291 (68%), Gaps = 12/291 (4%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            + TV+  +  I T+IAFMGDTLHFL+P FV  LFA SPKL+T YAT+VLPPEAL+++ SL
Sbjct: 130  EQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSL 189

Query: 1138 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP----------T 995
            YPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +     N P           
Sbjct: 190  YPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWA 249

Query: 994  ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 815
            +TAQR+ETKGANHLF+FQRG   TP+ R+  T   Y+TVP +FLP+++N R P+ KTI  
Sbjct: 250  VTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQ 309

Query: 814  QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDV 635
            QMF YIKSVK+  ERDI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+V
Sbjct: 310  QMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEV 369

Query: 634  LSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 482
            L+G+L ++L RP++S +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 370  LAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  309 bits (791), Expect = 2e-81
 Identities = 154/278 (55%), Positives = 198/278 (71%), Gaps = 6/278 (2%)
 Frame = -3

Query: 1288 IPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYS 1109
            I TN AFMGDTLHFL  + +  +F  SPKLQTLYAT+VLPPEAL+RL SL+P IY L + 
Sbjct: 142  ITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFH 201

Query: 1108 EDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQ 941
            ++ F+Y PGGHAGA+Y HKY+QLEW+ VG    A++      +T+Q LETKGANHLFIFQ
Sbjct: 202  QEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQ 261

Query: 940  RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 761
            RG +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+KSVK   ERDIW
Sbjct: 262  RGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIW 321

Query: 760  AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--D 587
            AK RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + ++L +P  +  +
Sbjct: 322  AKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWE 381

Query: 586  IQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 473
            IQ+   F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 382  IQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  295 bits (755), Expect = 3e-77
 Identities = 151/306 (49%), Positives = 201/306 (65%), Gaps = 10/306 (3%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            +DT+ S +  I T   F+GDTLHFL PSF+T LFA +PK+QT+ AT+VLP EALY L SL
Sbjct: 130  EDTLHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARNPKIQTVLATMVLPTEALYGLTSL 189

Query: 1138 YPQIYTLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQR 980
            YP +Y+L+Y +         F Y PGGH GA Y H+  Q++WL  GH+    +  ITAQ+
Sbjct: 190  YPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHIIDG-KVCITAQK 248

Query: 979  LETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFY 800
            LETK ANHLFI++RG Y TPE R F T   YVT+P IFLP ++N R PI KT++MQ+F Y
Sbjct: 249  LETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLFMY 308

Query: 799  IKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNL 620
            +K+V  AKERDIWAK RQLI T++LQ Y P+EI  LVNYF F A   + T F+ +L G++
Sbjct: 309  VKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFDSMLDGSI 368

Query: 619  IQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---FPVRTVNTRLRGPPGFH 449
            I+++ RP+ +  +   Q   G   F +L++AL W  I L     PV+T + R  G    +
Sbjct: 369  IKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKTHDWRRMGVADSN 428

Query: 448  NPFTKP 431
            +PFT P
Sbjct: 429  DPFTYP 434


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  291 bits (745), Expect = 4e-76
 Identities = 149/281 (53%), Positives = 193/281 (68%), Gaps = 1/281 (0%)
 Frame = -3

Query: 1318 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 1139
            +DT+I  L ++ T +AFMGDTLHFLS  F+  LF  +  LQTL AT+VLP EA YR+ SL
Sbjct: 129  EDTLIDSL-HVNTEVAFMGDTLHFLSFHFLGRLFHLNKNLQTLVATMVLPAEAKYRMASL 187

Query: 1138 YPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGA 962
            +P +YTL+Y  E  F+Y PGGH GA Y H + QL+WL VG +   NQ  ITAQR+E+K A
Sbjct: 188  HPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKAA 246

Query: 961  NHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKE 782
            NHLF+FQRGN  TP  R F T + YVT+P IFLP+++N R PI KT++MQ+F Y+K V +
Sbjct: 247  NHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAK 306

Query: 781  AKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 602
              ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  DS TCF D+LSG+L ++L +
Sbjct: 307  VTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQ 366

Query: 601  PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 479
            PL + +     F  G P F KL+KAL WQ IT+   V  +N
Sbjct: 367  PLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  288 bits (736), Expect = 5e-75
 Identities = 180/452 (39%), Positives = 241/452 (53%), Gaps = 16/452 (3%)
 Frame = -3

Query: 1315 DTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 1136
            DT+ S +  I T +AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+
Sbjct: 131  DTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLH 190

Query: 1135 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 956
            P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + +   ITAQR+ETK ANH
Sbjct: 191  PLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANH 250

Query: 955  LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 776
            LF+F RG   TP  R+F     Y T+P IFLP  +N RTP +KT + QMF Y+KS+K+  
Sbjct: 251  LFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPT 310

Query: 775  ERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 605
            E D++AKFRQL  T +LQ   P       LL  + E   S         +LSG+ ++RLL
Sbjct: 311  ETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLL 366

Query: 604  RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTK 434
            +PL   ++++ Q   GR  FV+L+KAL+W  IT    V    T +T  R   G       
Sbjct: 367  KPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPL 426

Query: 433  PHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTE 263
             + + P   + +RA     Y +   T     D    +   L ++   T+L   H     E
Sbjct: 427  GNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEE 486

Query: 262  Q-------LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHT 104
                    L+  H       GGP        EQ++E            +      +G   
Sbjct: 487  DITHRVLALKVPHGSPPPGFGGP--SSAAQPEQEKEVARPATPPEQEKQP-----EGQKM 539

Query: 103  DQVPVNSDPATLPWVAWLPKLNALGFEALEIQ 8
               PV++    LPW  W P L  LGF+A EIQ
Sbjct: 540  ITRPVSTLEDALPWNKWTPILRGLGFQAREIQ 571


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  284 bits (726), Expect = 7e-74
 Identities = 138/277 (49%), Positives = 187/277 (67%), Gaps = 4/277 (1%)
 Frame = -3

Query: 1303 SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIY 1124
            S    I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY
Sbjct: 137  STTPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIY 196

Query: 1123 TLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANH 956
             L + E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETKGANH
Sbjct: 197  ELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANH 256

Query: 955  LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 776
            LF+FQRGN+ TP  RTF     +VT+P IFLP++YN R PI KT+  Q+F YIKSVK   
Sbjct: 257  LFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVT 316

Query: 775  ERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPL 596
            ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+
Sbjct: 317  ERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPI 376

Query: 595  RSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 485
             +          G+  F +L++AL+W  ++L + V T
Sbjct: 377  VAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  283 bits (725), Expect = 9e-74
 Identities = 137/272 (50%), Positives = 186/272 (68%), Gaps = 4/272 (1%)
 Frame = -3

Query: 1288 IPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYS 1109
            I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY L + 
Sbjct: 142  IQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFH 201

Query: 1108 EDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQ 941
            E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQ
Sbjct: 202  EKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQ 261

Query: 940  RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 761
            RGN+ TP  RTF     +VT+P IFLP++YN R PI KT+  Q+F YIKSVK   ERDIW
Sbjct: 262  RGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIW 321

Query: 760  AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 581
            AK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L +P+ +   
Sbjct: 322  AKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKLFKPIVAWWS 381

Query: 580  RVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 485
                   G+  F +L++AL+W  ++L + V T
Sbjct: 382  TFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  283 bits (725), Expect = 9e-74
 Identities = 175/445 (39%), Positives = 234/445 (52%), Gaps = 9/445 (2%)
 Frame = -3

Query: 1315 DTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 1136
            DT+ S +  I T +AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+
Sbjct: 131  DTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLH 190

Query: 1135 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 956
            P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + +   ITAQR+ETK ANH
Sbjct: 191  PLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANH 250

Query: 955  LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 776
            LF+F RG   TP  R+F     Y T+P IFLP  +N RTP +KT + QMF Y+KS+K+  
Sbjct: 251  LFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPT 310

Query: 775  ERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 605
            E D++AKFRQL  T +LQ   P       LL  + E   S         +LSG+ ++RLL
Sbjct: 311  ETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLL 366

Query: 604  RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTK 434
            +PL   ++++ Q   GR  FV+L+KAL+W  IT    V    T +T  R   G       
Sbjct: 367  KPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPL 426

Query: 433  PHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTE 263
             + + P   + +RA     Y +   T     D    +   L ++   T+L   H     E
Sbjct: 427  GNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEE 486

Query: 262  QLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVNS 83
             +           G P      P    +                    +G      PV++
Sbjct: 487  DITHRVLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKPATPPEQEKQPEGQKMITRPVSA 546

Query: 82   DPATLPWVAWLPKLNALGFEALEIQ 8
                LPW  W P L  LGF+A EIQ
Sbjct: 547  LENALPWNKWTPILRGLGFQAREIQ 571


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  282 bits (722), Expect = 2e-73
 Identities = 137/272 (50%), Positives = 185/272 (68%), Gaps = 4/272 (1%)
 Frame = -3

Query: 1288 IPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYS 1109
            I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++P IY L + 
Sbjct: 142  IQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFH 201

Query: 1108 EDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPT----ITAQRLETKGANHLFIFQ 941
            E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETKGANHLF+FQ
Sbjct: 202  ERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQ 261

Query: 940  RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 761
            RGN+ TP  RTF     +VT+P IFLP++YN R PI KT+  Q+F YIKSVK   ERDIW
Sbjct: 262  RGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIW 321

Query: 760  AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 581
            AK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L +P+ +   
Sbjct: 322  AKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWS 381

Query: 580  RVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 485
                   G+  F +L++AL+W  ++L + V T
Sbjct: 382  TFKGALFGKEEFEQLMEALEWVDVSLSYKVET 413