BLASTX nr result
ID: Rehmannia25_contig00000002
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00000002
(4556 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 2158 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2138 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2138 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2138 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2137 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2135 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2133 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2128 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 2054 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1763 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1269 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1046 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1046 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1043 0.0
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 925 0.0
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 923 0.0
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 915 0.0
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 911 0.0
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 909 0.0
gb|AFM77886.1| replicase [Hosta virus X] 909 0.0
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 2158 bits (5592), Expect = 0.0
Identities = 1072/1278 (83%), Positives = 1130/1278 (88%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
+GHL APNQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYN
Sbjct: 227 IGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF A
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNTRLRGPPGF +PFT+P PVNPDDA+T +FREF T+ + LE S E+
Sbjct: 407 RVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDV 466
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
+HTSLKV LS EQL ALHELGN+R GGP+LPK + T S+
Sbjct: 467 THTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSS 511
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
L + H P P + K +GFEALEIQTDPSTG+ IMPI D R+LP+
Sbjct: 512 DLLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPR 567
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A +P HW+ P K++ TLR LNRFPTPW PDRARARAFTSDVKNSRTGKALHRE+QTWK
Sbjct: 568 AIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWK 627
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLT+N + AISVIHGAGGSGKSQALQTLLRQNP+LPIEVVLPTNELRLDWLKKL
Sbjct: 628 ETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKL 687
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTH
Sbjct: 688 PHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTH 747
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HEANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQ
Sbjct: 748 HEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQ 807
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 808 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 867
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS PV
Sbjct: 868 VDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPV 927
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
E+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKA
Sbjct: 928 EECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKA 987
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKK
Sbjct: 988 RLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKK 1047
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1048 SLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1107
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQ
Sbjct: 1108 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQ 1167
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1168 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1227
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1228 NIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITP 1287
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1288 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAH 1347
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGSPFL
Sbjct: 1348 LHQVTVRDLVKFGGSPFL 1365
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2138 bits (5540), Expect = 0.0
Identities = 1065/1278 (83%), Positives = 1116/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + L QL ALHELGN R GGPLLPK P
Sbjct: 462 EHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKL
Sbjct: 640 ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2138 bits (5540), Expect = 0.0
Identities = 1065/1278 (83%), Positives = 1117/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEXTLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + + L QL ALHELGN R GGPLLPK P
Sbjct: 462 EHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKL
Sbjct: 640 ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2138 bits (5539), Expect = 0.0
Identities = 1065/1278 (83%), Positives = 1117/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + + L QL ALHELGN R GGPLLPK P
Sbjct: 462 EHQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKL
Sbjct: 640 ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2137 bits (5537), Expect = 0.0
Identities = 1066/1283 (83%), Positives = 1116/1283 (86%), Gaps = 21/1283 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F +LE AE
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + L QL ALHELGNTR GGPLLPK A
Sbjct: 462 EHQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPK-------GPAKLTTVEPCPDLPAEN 514
Query: 3294 SLN-----QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADV 3130
S N + T + P DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D
Sbjct: 515 SANPEPPRKTTQTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDT 574
Query: 3129 RDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRE 2950
R+LP+A HW P + ++++TLR NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE
Sbjct: 575 RELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRE 634
Query: 2949 TQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLD 2770
+Q WKETQTML EN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLD
Sbjct: 635 SQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLD 694
Query: 2769 WLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDP 2590
WLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDP
Sbjct: 695 WLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDP 754
Query: 2589 RQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTY 2410
RQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTY
Sbjct: 755 RQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTY 814
Query: 2409 GFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYT 2230
GFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYT
Sbjct: 815 GFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYT 874
Query: 2229 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXX 2050
ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+
Sbjct: 875 ALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPC 934
Query: 2049 XXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLW 1870
PVED TTTLDDFKE L DKF+REIF HGHTNCVQ DDPTTQLFSHQQAKDEALLW
Sbjct: 935 THFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLW 994
Query: 1869 ETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQN 1690
ETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQN
Sbjct: 995 ETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQN 1054
Query: 1689 TYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1510
TYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV
Sbjct: 1055 TYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAV 1114
Query: 1509 MLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1330
MLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD
Sbjct: 1115 MLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQD 1174
Query: 1329 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAY 1150
GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAY
Sbjct: 1175 GAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAY 1234
Query: 1149 THTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCG 970
THTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCG
Sbjct: 1235 THTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCG 1294
Query: 969 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS---------- 820
YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1295 YLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
Query: 819 ------XXXXXXXXVKFGGSPFL 769
VKFGGSPFL
Sbjct: 1355 PHQAHLHQVTVRDLVKFGGSPFL 1377
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2135 bits (5533), Expect = 0.0
Identities = 1064/1278 (83%), Positives = 1116/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + + L QL ALHELGN R G PLLPK P
Sbjct: 462 EHQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P + ++L+TLRGLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKL
Sbjct: 640 ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2133 bits (5526), Expect = 0.0
Identities = 1062/1278 (83%), Positives = 1114/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + L QL ALHELGN R GGPLLPK P
Sbjct: 462 EHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKL
Sbjct: 640 ETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQ
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQ 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2128 bits (5514), Expect = 0.0
Identities = 1060/1278 (82%), Positives = 1113/1278 (87%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLT
Sbjct: 167 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYN
Sbjct: 227 VGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 287 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 346
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
SLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 347 SLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVR 406
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
VNT LRG PGF +PF +P PVNPDDA+T ++F+ F + +L +E
Sbjct: 407 KVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATAT-----VEATLAQQSETPD 461
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
H SL + L QL ALHELGN R GGPLLPK P
Sbjct: 462 EHQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPE 519
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
++ + + P DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+
Sbjct: 520 PPHKTTQSSDLPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPR 579
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
A HW P ++++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WK
Sbjct: 580 ADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWK 639
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQ MLTEN NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDW KKL
Sbjct: 640 ETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKL 699
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTH
Sbjct: 700 PHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTH 759
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+
Sbjct: 760 HESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPR 819
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRA
Sbjct: 820 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRA 879
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PV
Sbjct: 880 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPV 939
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
ED TTTLDDFKE L DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI A
Sbjct: 940 EDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINA 999
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1000 RLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKK 1059
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
S+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT
Sbjct: 1060 SVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1119
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1120 MARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1179
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF
Sbjct: 1180 FEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRF 1239
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1240 DIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1299
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYS
Sbjct: 1300 KGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQAR 1359
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGS FL
Sbjct: 1360 LHQVTVRDLVKFGGSSFL 1377
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 2054 bits (5322), Expect = 0.0
Identities = 1026/1278 (80%), Positives = 1092/1278 (85%), Gaps = 16/1278 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHS
Sbjct: 107 RGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
P+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT
Sbjct: 167 PRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 225
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGHLTAP PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YN
Sbjct: 226 VGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYN 285
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
CRTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEITLLVNYFEFTA
Sbjct: 286 CRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTA 345
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
+LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR
Sbjct: 346 TLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVR 404
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
V T +RGPPGF NPFT+P PVNP+DAD F++F T+ LE SAE+
Sbjct: 405 DVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPD 464
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASA 3295
HT LKV + LS QL A+H LG++R GGPLLP++T +QAS
Sbjct: 465 HHTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASP 524
Query: 3294 SLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK 3115
+ + D P +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+
Sbjct: 525 ASSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPR 584
Query: 3114 ATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWK 2935
ATLP HW L ++L+TLR LNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWK
Sbjct: 585 ATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWK 644
Query: 2934 ETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 2755
ETQTMLTEN LAISVIHGAGGSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKL
Sbjct: 645 ETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKL 704
Query: 2754 PHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 2575
PHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTH
Sbjct: 705 PHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTH 764
Query: 2574 HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 2395
HE+NEEALISKL PATTI+S SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP
Sbjct: 765 HESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPL 824
Query: 2394 PGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 2215
PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA
Sbjct: 825 PGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 884
Query: 2214 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPV 2035
VDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF PV
Sbjct: 885 VDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPV 944
Query: 2034 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKA 1855
E+ TTLDDFKE L DKF+REIFT GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+A
Sbjct: 945 EEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRA 1004
Query: 1854 RLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKK 1675
RL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK
Sbjct: 1005 RLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKK 1064
Query: 1674 SISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGT 1495
+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGT
Sbjct: 1065 TMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGT 1124
Query: 1494 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1315
MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ
Sbjct: 1125 MARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQ 1184
Query: 1314 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1135
FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF
Sbjct: 1185 FEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF 1244
Query: 1134 EIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 955
+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP
Sbjct: 1245 DIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITP 1304
Query: 954 KGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS--------------- 820
KGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYS
Sbjct: 1305 KGLIKDPLKLHASLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAH 1364
Query: 819 -XXXXXXXXVKFGGSPFL 769
VKFGGSPFL
Sbjct: 1365 LHQVTVRDLVKFGGSPFL 1382
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 1763 bits (4567), Expect = 0.0
Identities = 888/1282 (69%), Positives = 1003/1282 (78%), Gaps = 20/1282 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGP H D FLNA++EPKDVPRYP DTVI + I T +AFMGDTLHFL PSF+T+LFA S
Sbjct: 107 RGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT
Sbjct: 167 PKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLT 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
G+L + + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N
Sbjct: 227 AGYLISEST-TVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSAN 285
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A
Sbjct: 286 ARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVA 345
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVR 3655
+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL WQP+ LEF V
Sbjct: 346 NLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVS 405
Query: 3654 TVNTRLRGPPGFHNPFTKPHPVNPDDADTMRAFREFXXXXXXXXXXTIADSLEGSAENLA 3475
TV R PPGF +P +P PVN DA T A
Sbjct: 406 TVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA---------------------------C 438
Query: 3474 SHTSLKVGHADLSTEQLRALHELGNTRLGG---PLLPKITXXXXXXXXXXXXXXXXXPTQ 3304
++ SL + + LS +QL ALH LG+ R G P PK T
Sbjct: 439 ANQSLPLDN--LSEDQLEALHVLGSLRTDGESLPSPPKAPLETGPHPTPTISAAGPTKTV 496
Query: 3303 ASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRD 3124
+ ++ + DP TLPW AWLP L ALGFEA EIQTDP IMPI D++
Sbjct: 497 PTPNVEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQT 556
Query: 3123 LPKATLPEHWNEPG-LSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 2947
LP T E+ + KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+
Sbjct: 557 LPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKES 616
Query: 2946 QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDW 2767
Q WKETQT LTE L +SVIHGAGGSGKSQALQT+LR +P+LP+EVVLPTNELR DW
Sbjct: 617 QNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDW 676
Query: 2766 LKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPR 2587
L+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+ L+L ILTGDPR
Sbjct: 677 LRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPR 736
Query: 2586 QSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYG 2407
QSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN PL V+YG
Sbjct: 737 QSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYG 796
Query: 2406 FQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTA 2227
F+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTA
Sbjct: 797 FRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTA 856
Query: 2226 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXX 2047
LSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+
Sbjct: 857 LSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVT 916
Query: 2046 XXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 1867
PVE+ + TL ++SL+DK++REI HG TNCVQ +D T QLFSHQQAKDEALLWE
Sbjct: 917 HFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWE 976
Query: 1866 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 1687
TI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ T
Sbjct: 977 TIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQT 1036
Query: 1686 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 1507
YL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVM
Sbjct: 1037 YLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVM 1096
Query: 1506 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 1327
LYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDG
Sbjct: 1097 LYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDG 1156
Query: 1326 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 1147
AMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYT
Sbjct: 1157 AMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYT 1216
Query: 1146 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 967
HTRF IP+ AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGY
Sbjct: 1217 HTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGY 1276
Query: 966 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSXXXXXXXXV-- 793
LITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYS +
Sbjct: 1277 LITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSP 1336
Query: 792 --------------KFGGSPFL 769
KFGGSPFL
Sbjct: 1337 EQAHLHQVTVRDLTKFGGSPFL 1358
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1269 bits (3283), Expect = 0.0
Identities = 626/708 (88%), Positives = 652/708 (92%), Gaps = 16/708 (2%)
Frame = -3
Query: 2844 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 2665
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 2664 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 2485
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 2484 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 2305
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 2304 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 2125
GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 2124 SLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1945
SLVRED++AEFS PVED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 1944 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 1765
NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 1764 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 1585
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 1584 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 1405
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 1404 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 1225
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 1224 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 1045
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 1044 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 865
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 864 NVIANYSLDAKLAYS----------------XXXXXXXXVKFGGSPFL 769
NV+ANYSLDAKLAYS VKFGGSPFL
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1046 bits (2706), Expect = 0.0
Identities = 530/823 (64%), Positives = 613/823 (74%), Gaps = 1/823 (0%)
Frame = -3
Query: 3285 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 3109
+G PV++ LPW W P L LGF+A EIQ P VIMPI + V LP +
Sbjct: 535 EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594
Query: 3108 LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 2929
+ H V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKET
Sbjct: 595 IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648
Query: 2928 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 2749
QT+ E + + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P
Sbjct: 649 QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708
Query: 2748 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 2569
PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE
Sbjct: 709 VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768
Query: 2568 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 2389
NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP
Sbjct: 769 NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828
Query: 2388 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVD 2209
+HLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV
Sbjct: 829 LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888
Query: 2208 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVED 2029
SIHF+N+ S+FWEKLEATPYLK FLS VRE+ IA PVE+
Sbjct: 889 SIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVEN 948
Query: 2028 KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARL 1849
+ L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARL
Sbjct: 949 TSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARL 1008
Query: 1848 TISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 1669
TIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K +
Sbjct: 1009 TISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPM 1068
Query: 1668 SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 1489
+ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMA
Sbjct: 1069 NMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMA 1128
Query: 1488 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 1309
RYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFE
Sbjct: 1129 RYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFE 1188
Query: 1308 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 1129
ILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+I
Sbjct: 1189 ILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDI 1248
Query: 1128 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 949
P GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKG
Sbjct: 1249 PPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKG 1308
Query: 948 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS 820
LIKDP KL ASL+L +A +G K + NY D LAY+
Sbjct: 1309 LIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYA 1349
Score = 305 bits (782), Expect = 9e-80
Identities = 156/307 (50%), Positives = 202/307 (65%), Gaps = 3/307 (0%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF S
Sbjct: 107 RGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
P L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL
Sbjct: 167 PHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLD 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGH+ +P+ ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N
Sbjct: 227 VGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFE 3844
RTP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P LL + E
Sbjct: 287 SRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLE 346
Query: 3843 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 3664
S +LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT
Sbjct: 347 ARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTE 402
Query: 3663 PVRTVNT 3643
V +T
Sbjct: 403 QVMAYHT 409
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 1046 bits (2704), Expect = 0.0
Identities = 526/816 (64%), Positives = 621/816 (76%), Gaps = 5/816 (0%)
Frame = -3
Query: 3255 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 3076
N+ A LPW W+PKLNALGFEA E Q P T +IMPI D+ K +P H
Sbjct: 612 NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667
Query: 3075 KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 2896
++L L+ L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ ++
Sbjct: 668 ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727
Query: 2895 LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 2716
+ +SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728 VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787
Query: 2715 AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 2536
A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L
Sbjct: 788 AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847
Query: 2535 PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 2356
P+T IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KK
Sbjct: 848 PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907
Query: 2355 AAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 2176
AAF++AGHK STYAGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+ S
Sbjct: 908 AAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTS 967
Query: 2175 SAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKES 1996
S FWEKLEATPYLKTFLS+VREDKI E+ PVE+ T L++F E
Sbjct: 968 SNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEE 1027
Query: 1995 LSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEE 1816
L+ K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIKARL IS + N E
Sbjct: 1028 LAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTE 1087
Query: 1815 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQS 1636
F KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS +K GERRQS
Sbjct: 1088 FVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQS 1146
Query: 1635 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 1456
PDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD
Sbjct: 1147 PDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYM 1206
Query: 1455 PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1276
P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PE
Sbjct: 1207 PEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPE 1266
Query: 1275 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 1096
WV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG AQ
Sbjct: 1267 WVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ----- 1321
Query: 1095 DCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPL 931
D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPKGLIKDPL
Sbjct: 1322 DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPL 1381
Query: 930 KLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
KL AS LAK + K + N + NY+ D KLAY
Sbjct: 1382 KLAASFRLAKERGKR----ELDNCLENYARDMKLAY 1413
Score = 352 bits (904), Expect = 7e-94
Identities = 172/314 (54%), Positives = 218/314 (69%), Gaps = 12/314 (3%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGP H D F+N+ VEPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV LFA S
Sbjct: 107 RGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
PKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL
Sbjct: 167 PKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLD 226
Query: 4194 VGHLT--APNQP----------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYV 4051
VG + N P +TAQR+ETKGANHLF+FQRG TP+ R+ T Y+
Sbjct: 227 VGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYI 286
Query: 4050 TVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSE 3871
TVP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E
Sbjct: 287 TVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDE 346
Query: 3870 ITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKAL 3691
+ LL NYF + L S E+VL+G+L ++L RP++S + + G+P F +L++AL
Sbjct: 347 LVLLANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEAL 406
Query: 3690 DWQPITLEFPVRTV 3649
W + L PVR V
Sbjct: 407 LWTNVDLILPVRYV 420
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1043 bits (2697), Expect = 0.0
Identities = 529/823 (64%), Positives = 612/823 (74%), Gaps = 1/823 (0%)
Frame = -3
Query: 3285 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 3109
+G PV++ LPW W P L LGF+A EIQ P VIMPI + V LP +
Sbjct: 535 EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594
Query: 3108 LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 2929
+ H V+ L L+R PTPW P RAR++TSD+KN RTG L +E+ TWKET
Sbjct: 595 IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648
Query: 2928 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 2749
QT+ E + + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P
Sbjct: 649 QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708
Query: 2748 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 2569
PE+ +T+ERAF SPVV+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE
Sbjct: 709 VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768
Query: 2568 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 2389
NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP
Sbjct: 769 NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828
Query: 2388 MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVD 2209
+HLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV
Sbjct: 829 LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888
Query: 2208 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVED 2029
SIHF+N+ S+FWEKLEATPYLK FLS VRE+ IA PVE+
Sbjct: 889 SIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVEN 948
Query: 2028 KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARL 1849
+ L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARL
Sbjct: 949 TSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARL 1008
Query: 1848 TISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 1669
TIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K +
Sbjct: 1009 TISSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPM 1068
Query: 1668 SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 1489
+ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMA
Sbjct: 1069 NMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMA 1128
Query: 1488 RYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFE 1309
RYMRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFE
Sbjct: 1129 RYMRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFE 1188
Query: 1308 ILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEI 1129
ILKAK+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+I
Sbjct: 1189 ILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDI 1248
Query: 1128 PEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKG 949
P GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKG
Sbjct: 1249 PPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKG 1308
Query: 948 LIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYS 820
LIKDP KL ASL+L +A +G K + NY D LAY+
Sbjct: 1309 LIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYA 1349
Score = 305 bits (782), Expect = 9e-80
Identities = 156/307 (50%), Positives = 202/307 (65%), Gaps = 3/307 (0%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF S
Sbjct: 107 RGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRS 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
P L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL
Sbjct: 167 PHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLD 226
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VGH+ +P+ ITAQR+ETK ANHLF+F RG TP R+F Y T+P IFLP ++N
Sbjct: 227 VGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFN 286
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFE 3844
RTP +KT + QMF Y+KS+K+ E D++AKFRQL T +LQ P LL + E
Sbjct: 287 SRTPYTKTFLQQMFLYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLE 346
Query: 3843 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 3664
S +LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT
Sbjct: 347 ARFS----HLLRCILSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTE 402
Query: 3663 PVRTVNT 3643
V +T
Sbjct: 403 QVMAYHT 409
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 925 bits (2391), Expect = 0.0
Identities = 471/830 (56%), Positives = 583/830 (70%), Gaps = 1/830 (0%)
Frame = -3
Query: 3309 TQASASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPIAD 3133
T+ S G H P N P LPW W+PKLNALGF L +DP ++I PI
Sbjct: 846 TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904
Query: 3132 VRDLPKATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHR 2953
++ LPE + + +LTT+ +R P + + +RA+A+ SDV+NSRTG L
Sbjct: 905 IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961
Query: 2952 ETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRL 2773
+ WKE TM E +A+SVIHGAGGSGKS ALQ L+R+NPEL VV PTNELRL
Sbjct: 962 QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021
Query: 2772 DWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2593
DWL KLP + +TFE+A S + +IF DY KLP GYIE + + L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081
Query: 2592 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 2413
PRQS++HE+NE A+IS+LAP+T+ F + RYYINATHRN + LA LGVYS + ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141
Query: 2412 YGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 2233
+P HLLVPS++KK + + G+K STYAGCQGITAP++QILLD DTT+C EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201
Query: 2232 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 2053
TALSRAV IHF+N+ A S AFW+KL ATPYLKTFL RE+++ E
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261
Query: 2052 XXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 1873
PVE++ L++ E L +K +REI HGHTNCVQ +D QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321
Query: 1872 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 1693
W TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP + F EDLW CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381
Query: 1692 NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 1513
TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441
Query: 1512 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 1333
VMLYGTMARYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQ
Sbjct: 1442 VMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQ 1501
Query: 1332 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 1153
DGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIA
Sbjct: 1502 DGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIA 1561
Query: 1152 YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 973
YTH RF++P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFC
Sbjct: 1562 YTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFC 1621
Query: 972 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
GYLITP G++KDP KL A++ LA+ Q K + +++LD KLAY
Sbjct: 1622 GYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAY 1665
Score = 327 bits (837), Expect = 4e-86
Identities = 166/304 (54%), Positives = 210/304 (69%), Gaps = 1/304 (0%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGP GD FLN VEPKD+ RYP+DT+I L ++ T +AFMGDTLHFLS F+ LF +
Sbjct: 106 RGPQQGDIFLNKIVEPKDIARYPEDTLIDSL-HVNTEVAFMGDTLHFLSFHFLGRLFHLN 164
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWL 4198
LQTL AT+VLP EA YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL
Sbjct: 165 KNLQTLVATMVLPAEAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWL 224
Query: 4197 TVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKY 4018
VG + NQ ITAQR+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+K+
Sbjct: 225 RVGRVRYKNQ-IITAQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKF 283
Query: 4017 NCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFT 3838
N R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F
Sbjct: 284 NTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFI 343
Query: 3837 ASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV 3658
A DS TCF D+LSG+L ++L +PL + + F G P F KL+KAL WQ IT+ V
Sbjct: 344 AKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTV 403
Query: 3657 RTVN 3646
+N
Sbjct: 404 ADIN 407
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 923 bits (2385), Expect = 0.0
Identities = 471/808 (58%), Positives = 579/808 (71%), Gaps = 3/808 (0%)
Frame = -3
Query: 3237 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 3058
LPW AW+PKL LGF+ ++Q DP+ G +I PI ++R +PK PE E V TL
Sbjct: 707 LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760
Query: 3057 RGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 2878
GL R PTP+ P+ RARA+TSDVKN R G L ++ + W L E LAISVI
Sbjct: 761 DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820
Query: 2877 HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 2698
HGAGGSGKSQALQTL++ NPEL I VVLPTNELRLDWL+KLP P E+F+TFE+A +
Sbjct: 821 HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880
Query: 2697 SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 2518
+P+VIFDDYGKLP GY+EAF + ++++L+ILTGD +QS HHE+NE A S + P
Sbjct: 881 TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940
Query: 2517 SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDA 2338
SEL RYYINATHRN K LANKLGVYS + +VT+G P PG+H+LVPSL KK AF++
Sbjct: 941 SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000
Query: 2337 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 2158
GHKVSTYAGCQGITAPK+QILL +T++C++EVLYTALSRAV SIHFVN++ + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060
Query: 2157 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFE 1978
LE TPYLK FLS +RE+ ED ++ E + +K E
Sbjct: 1061 LECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHE 1120
Query: 1977 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 1798
REIF+E HGH+NCVQ +DP Q+FSHQQAKD+ LLW TI+ARL IS P+AN +E+ K+
Sbjct: 1121 REIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTLLWATIEARLVISNPKANWQEYLEKRP 1180
Query: 1797 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 1618
+G++L+ +Y +AM LPK F EDLW EVQ TYL K + IK G RQSPD+ +
Sbjct: 1181 VGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEVQKTYLSKPENMIKNGMARQSPDYDPN 1240
Query: 1617 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 1438
I +FLKSQWVKKMEKLGA KIKPGQTIASF Q VML+GTMARYMRR R+ P +I I
Sbjct: 1241 VISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQATVMLFGTMARYMRRMREVFQPAHIRI 1300
Query: 1437 NCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVI 1267
NCE TP+DLS W +W F PS ANDFTAFDQSQDGAMLQFEILKA++ ++PE ++
Sbjct: 1301 NCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHHSIPEDIL 1360
Query: 1266 EGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCA 1087
+ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+THT+F IPEGTAQ+YAGDD A
Sbjct: 1361 DAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQLYAGDDSA 1420
Query: 1086 IAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLEL 907
I + +PSF +++ ++ L++KP Q++G WAEFCG+ ITPKGLIKDP KLHAS L
Sbjct: 1421 IDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKLHASWML 1480
Query: 906 AKAQKKAGVKDAISNVIANYSLDAKLAY 823
K KK VK NV+ +Y LD LAY
Sbjct: 1481 EK--KKGNVK----NVLRSYELDLALAY 1502
Score = 340 bits (871), Expect = 5e-90
Identities = 171/313 (54%), Positives = 218/313 (69%), Gaps = 8/313 (2%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPTNIAFMGDTLHFLSPSFVTALFA 4381
RGP D FLNAH+EPKDV RY DT+ + I TN AFMGDTLHFL + + +F
Sbjct: 107 RGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFK 166
Query: 4380 HSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEW 4201
SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW
Sbjct: 167 SSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEW 226
Query: 4200 LTVGHLTAPNQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 4033
+ VG ++ +T+Q LETKGANHLFIFQRG +LTPE R F+T YVT+P IF
Sbjct: 227 IKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIF 286
Query: 4032 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 3853
LP+++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLLVN
Sbjct: 287 LPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVN 346
Query: 3852 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQP 3679
YF A L S TCF++VLSG + ++L +P + +IQ+ F G F +L++AL+W
Sbjct: 347 YFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVD 404
Query: 3678 ITLEFPVRTVNTR 3640
+TL +P +T + R
Sbjct: 405 VTLTYPTKTFDNR 417
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 915 bits (2365), Expect = 0.0
Identities = 460/818 (56%), Positives = 584/818 (71%), Gaps = 3/818 (0%)
Frame = -3
Query: 3267 EAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPK--ATLPEHW 3094
E + LPW WL LN+L F+ + D G++I PI D + LPK LPE
Sbjct: 830 EPDTKQETPELPWKLWLGVLNSLNFKGNQRILD-GNGQLIFPIKDNKSLPKYEGRLPE-- 886
Query: 3093 NEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 2914
+L L+ +R+P P+ D + RAF SDVKN+RTG ++ WKE T +
Sbjct: 887 -----PHLLEQLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSLTTKQPDEWKEAFTRMA 941
Query: 2913 ENVTAN-LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPE 2737
E+ +A++VIHGAGGSGKSQ LQ L +NPE I +LPTNELR DWL KLP P
Sbjct: 942 ESPEQRTVALTVIHGAGGSGKSQLLQRYLMENPECKINTILPTNELRNDWLTKLPKMPLT 1001
Query: 2736 QFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEE 2557
+TFERA + + PVVIFDDY KLP GYI+AF H ++E ILTGDPRQST HE+NE+
Sbjct: 1002 AIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAILTGDPRQSTFHESNEQ 1061
Query: 2556 ALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLL 2377
A+I+ L+ +T FS+ SRYYINATHRN + LA LGVYS + ++ +P+P HLL
Sbjct: 1062 AMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLGVYSEKTGLTSISMSSRPEPDWHLL 1121
Query: 2376 VPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHF 2197
VPSL+KK ++T+ G+K STYAGCQGITA +VQ+LLD DTT+C+ +VLYTALSRAV ++HF
Sbjct: 1122 VPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHF 1181
Query: 2196 VNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTT 2017
+N++A SSAFW+KL +TPYLKTFLS +RED++ E PVE++ +
Sbjct: 1182 INTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLS 1241
Query: 2016 LDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTIST 1837
L+D E L +K ERE+++ HG++NCVQ DDP QLFSHQQAKD+ LLW TI+ARL IS
Sbjct: 1242 LEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISN 1301
Query: 1836 PEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIK 1657
P+AN+EEFR KK++GD+LW NY +AMKLP + EFS +LW CAEEVQ TYL K ++ IK
Sbjct: 1302 PKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIK 1361
Query: 1656 GGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMR 1477
GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ VMLYGTMARYMR
Sbjct: 1362 NGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMR 1421
Query: 1476 RFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKA 1297
R R A P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQFE+LKA
Sbjct: 1422 RIRQAFQPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKA 1481
Query: 1296 KYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGT 1117
K+ N+PE +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF I + T
Sbjct: 1482 KHHNIPEAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDT 1541
Query: 1116 AQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKD 937
AQ+YAGDD A +++ EK SF + ++AL +KP + Q++G+WAEFCGY ITP GLIK+
Sbjct: 1542 AQLYAGDDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKE 1601
Query: 936 PLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
P KL A+L LA Q K +KD ++ +YS D LAY
Sbjct: 1602 PKKLQANLTLAIKQNK--IKDTVN----SYSQDVALAY 1633
Score = 323 bits (828), Expect = 4e-85
Identities = 165/329 (50%), Positives = 216/329 (65%), Gaps = 10/329 (3%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGP D F+N VEPKDV RY +DT+ S + I T F+GDTLHFL PSF+T LFA +
Sbjct: 107 RGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFLTKLFARN 166
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMYIPGGHAGASYFHKY 4216
PK+QT+ AT+VLP EALY L SLYP +Y+L+Y + F Y PGGH GA Y H+
Sbjct: 167 PKIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHEL 226
Query: 4215 DQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDI 4036
Q++WL GH+ + ITAQ+LETK ANHLFI++RG Y TPE R F T YVT+P I
Sbjct: 227 KQIDWLRFGHII-DGKVCITAQKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKI 285
Query: 4035 FLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLV 3856
FLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI LV
Sbjct: 286 FLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLV 345
Query: 3855 NYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPI 3676
NYF F A + T F+ +L G++I+++ RP+ + + Q G F +L++AL W I
Sbjct: 346 NYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEI 405
Query: 3675 TLE---FPVRTVNTRLRGPPGFHNPFTKP 3598
L PV+T + R G ++PFT P
Sbjct: 406 DLTLDVLPVKTHDWRRMGVADSNDPFTYP 434
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 911 bits (2355), Expect = 0.0
Identities = 470/828 (56%), Positives = 580/828 (70%), Gaps = 3/828 (0%)
Frame = -3
Query: 3297 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 3118
+++ QG ++E +P LPW AWL KL LGF ++Q DP+ G +I PI ++ LP
Sbjct: 682 STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739
Query: 3117 KATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 2938
K + PE N P L K+L R PTP+ P RA+A++SDVKNSR G L ++ + W
Sbjct: 740 KCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
Query: 2937 KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKK 2758
L EN LAISVIHGAGGSGKS+ALQ L+ NP+ + +VLPTNELRLDWLKK
Sbjct: 795 GHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKK 854
Query: 2757 LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 2578
LP P +Q +TFE+A + P VIFDDYGKLP GYIEAF+ +S+EL++LTGD +QS
Sbjct: 855 LPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSV 914
Query: 2577 HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 2398
HHE+NE A+ S + P T + SRYYINATHRN + LANKLGVYS + +T G P
Sbjct: 915 HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHP 974
Query: 2397 QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSR 2218
PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAP+VQILL +T+MC++EV+YTALSR
Sbjct: 975 VPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSR 1034
Query: 2217 AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXP 2038
AV SIHFVN + AFW KLE+TPYLK FLS +RED P
Sbjct: 1035 AVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIP 1094
Query: 2037 VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 1858
V+ +D + + +K EREIF+E HGH+NCVQ +D Q+FSHQQAKDE LLW TI+
Sbjct: 1095 VDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIE 1154
Query: 1857 ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 1678
ARL IS P+AN +EF K+ +GD+L+ Y +AM LP E F LW C EVQ TYL
Sbjct: 1155 ARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQRTYLA 1214
Query: 1677 KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 1498
K I+ +K G+ RQSPD+ + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q VML+G
Sbjct: 1215 KPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFG 1274
Query: 1497 TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDG 1327
TMARYMRR R+ P NI INCE TP+DL+ W + W F+ PS ANDFTAFDQSQDG
Sbjct: 1275 TMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGSAGQWKFAGPSLANDFTAFDQSQDG 1334
Query: 1326 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 1147
AMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+T
Sbjct: 1335 AMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLTIMRLTGEGPTFDANTECNIAFT 1394
Query: 1146 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 967
H +F+IP+GTAQ+YAGDD AI P + SF L++ ++ L++KPA QE+G WAEFCGY
Sbjct: 1395 HAKFQIPKGTAQLYAGDDSAIDGNPPVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGY 1454
Query: 966 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
ITPKG IKDP KLHASL L +KK G + NV+ +Y LD LAY
Sbjct: 1455 RITPKGFIKDPKKLHASLVL---EKKRG---NLKNVLRSYELDLALAY 1496
Score = 313 bits (803), Expect = 3e-82
Identities = 156/307 (50%), Positives = 205/307 (66%), Gaps = 6/307 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFA 4381
RGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL + +F
Sbjct: 107 RGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFT 166
Query: 4380 HSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEW 4201
S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+W
Sbjct: 167 SSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQW 226
Query: 4200 LTVGHLT----APNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 4033
L VG + +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IF
Sbjct: 227 LKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIF 286
Query: 4032 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 3853
LP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VN
Sbjct: 287 LPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVN 346
Query: 3852 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 3673
Y+ + LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++
Sbjct: 347 YYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVS 406
Query: 3672 LEFPVRT 3652
L + V T
Sbjct: 407 LSYKVET 413
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 909 bits (2348), Expect = 0.0
Identities = 467/828 (56%), Positives = 576/828 (69%), Gaps = 3/828 (0%)
Frame = -3
Query: 3297 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 3118
+++ QG ++E +P LPW AWL KL LGF ++Q DP+ G +I PI ++ LP
Sbjct: 682 STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739
Query: 3117 KATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 2938
K + PE N P L K+L + R PTP+ P RA+A++SDVKNSR G L ++ + W
Sbjct: 740 KCS-PEKVN-PSLLKMLNSQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794
Query: 2937 KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKK 2758
L EN LAISVIHGAGGSGKS+ALQ L+ NP+ + +VLPTNELRLDWLKK
Sbjct: 795 GHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKK 854
Query: 2757 LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 2578
LP P +Q +TFE+A + P VIFDDYGKLP GYIEAF+ +S EL++LTGD +QS
Sbjct: 855 LPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSV 914
Query: 2577 HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 2398
HHE+NE A+ S + P T + SRYYINATHRN + LANKLGVYS + +T G P
Sbjct: 915 HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHP 974
Query: 2397 QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSR 2218
PG+HLLVPSL KK AF++ GHK STYAGCQG+TAP+VQILL +T+MC++EV+YTALSR
Sbjct: 975 VPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSR 1034
Query: 2217 AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXP 2038
AV SIHFVN + AFW KLE+TPYLK FLS +RED P
Sbjct: 1035 AVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIP 1094
Query: 2037 VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 1858
V+ +D + + +K EREIF+E HGH+NCVQ +D Q+FSHQQAKDE LLW TI+
Sbjct: 1095 VDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLLWATIE 1154
Query: 1857 ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 1678
ARL IS P+AN +EF KK +GD+L+ Y +AM LP E F LW C E+Q TYL
Sbjct: 1155 ARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQRTYLA 1214
Query: 1677 KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 1498
K I+ +K G+ RQSPD+ + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q VML+G
Sbjct: 1215 KPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQATVMLFG 1274
Query: 1497 TMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL---NYWDFSKPSYANDFTAFDQSQDG 1327
TMARYMRR R+ P NI INCE TP+DL+ W + W F+ PS ANDFTAFDQSQDG
Sbjct: 1275 TMARYMRRMREIFQPKNIAINCEMTPEDLTDWAVGPAGQWKFAGPSLANDFTAFDQSQDG 1334
Query: 1326 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 1147
AMLQFE+LKAK+ ++PE V++ YL IK + KIFLGTL+IMRLTGEGPTFDANTECNIA+T
Sbjct: 1335 AMLQFEVLKAKHHSIPEDVLDAYLHIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFT 1394
Query: 1146 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 967
H +F+IP+GTAQ+YAGDD AI + SF L++ ++ L++KPA QE+G WAEFCGY
Sbjct: 1395 HAKFQIPKGTAQLYAGDDSAIDGNPTVRESFRLVEQKLKLRSKPAIAMQEKGDWAEFCGY 1454
Query: 966 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
ITPKG IKDP KLHASL L K K + NV+ +Y LD LAY
Sbjct: 1455 RITPKGFIKDPKKLHASLVLEKK------KGNLRNVLRSYELDLALAY 1496
Score = 312 bits (799), Expect = 1e-81
Identities = 155/307 (50%), Positives = 206/307 (67%), Gaps = 6/307 (1%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDTLHFLSPSFVTALFA 4381
RGP HGD FLNA +EPKDV RY + + S I T +AF+GDTLHFL + +F
Sbjct: 107 RGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFT 166
Query: 4380 HSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEW 4201
+S KL TLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHAGASY H+Y QL+W
Sbjct: 167 NSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHAGASYCHEYSQLQW 226
Query: 4200 LTVGHLTAPNQPT----ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIF 4033
L VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF +VT+P IF
Sbjct: 227 LKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTFGVETKFVTLPPIF 286
Query: 4032 LPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVN 3853
LP+KYN R PI KT+ Q+F YIKSVK ERDIWAK RQ+I T ELQ Y E+ L+VN
Sbjct: 287 LPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIWAKVRQIIKTAELQSYSAKELALIVN 346
Query: 3852 YFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPIT 3673
Y+ + LDS TCF++VL+G +++L +P+ + G+ F +L++AL+W ++
Sbjct: 347 YYLLISKLDSVTCFDNVLTGGALKKLFKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVS 406
Query: 3672 LEFPVRT 3652
L + V T
Sbjct: 407 LSYRVET 413
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 909 bits (2348), Expect = 0.0
Identities = 473/840 (56%), Positives = 583/840 (69%), Gaps = 11/840 (1%)
Frame = -3
Query: 3309 TQASASLNQG-----DHT-DEAPVNSDPA--TLPWVAWLPKLNALGFEALEIQTDPSTGE 3154
+QAS++ +G D T ++AP + P LPW WL +L A+GF+ E Q D G
Sbjct: 591 SQASSATTRGRDPVIDRTREQAPTSITPEEEALPWKHWLKQLKAVGFKGNETQMD-GDGT 649
Query: 3153 VIMPIADVRDLPKATLPEHWNEPGLSK-VLTTLRGLNRFPTPWCPDRARARAFTSDVKNS 2977
I PI ++ +P + N +SK +L TLR + R PT W PD +RARA+TSD+KN
Sbjct: 650 TISPIEQIKSMPVS------NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNR 703
Query: 2976 RTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIE-- 2803
RTG A+H Q WKET + EN L ISVIHGAGGSGKS+ LQ +L + L E
Sbjct: 704 RTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLNKFHFLFDETL 763
Query: 2802 VVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHA 2623
VV PTNELR DW+ KLP + P TFERA + VIFDDY KLP G+IEA+++
Sbjct: 764 VVCPTNELRRDWIDKLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSICQP 823
Query: 2622 SLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVY 2443
++ELVILTGD +Q++HHE+N+ A+I+ L PA FS+ RYY+NATHRN + LAN LG+Y
Sbjct: 824 NVELVILTGDAKQASHHESNDNAMIAGLDPAALEFSKFCRYYLNATHRNPRNLANALGIY 883
Query: 2442 SSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPKVQILLDND 2263
S LKVT+ P MH+LVPSL+KKA + GHK STYAGCQG+T KVQI LD++
Sbjct: 884 SEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSN 943
Query: 2262 TTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXX 2083
TT+C+ EVLYTALSRAV+ I+FVNS + FW KLEATPYLKTFL L RE+KI E +
Sbjct: 944 TTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPE 1003
Query: 2082 XXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFS 1903
PVE E + +K REI+ + HGHTNCVQ D+P Q+F+
Sbjct: 1004 EPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFA 1063
Query: 1902 HQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSED 1723
HQQAKDEAL WETI+ARL I+T EAN++E K+D+GD+L+ YHKAM LPK+ F D
Sbjct: 1064 HQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFEND 1123
Query: 1722 LWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPG 1543
LW CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA IKPG
Sbjct: 1124 LWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPG 1183
Query: 1542 QTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYA 1363
QTIASF Q VMLYGTMARYMRR RD P +I+INCEKTP +S +V WDFS +YA
Sbjct: 1184 QTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYA 1243
Query: 1362 NDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPT 1183
NDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPT
Sbjct: 1244 NDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPT 1303
Query: 1182 FDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTP 1003
FDANTECNIAYTH RF +PE AQ+YAGDD A+++VCPEK SF +R+ L++KP P
Sbjct: 1304 FDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFP 1363
Query: 1002 QERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 823
Q +G WAEFCG LITP+G+IKDP+KLHAS LA K G I + +Y D KL+Y
Sbjct: 1364 QTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSY 1419
Score = 288 bits (738), Expect = 1e-74
Identities = 144/295 (48%), Positives = 190/295 (64%)
Frame = -3
Query: 4554 RGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHS 4375
RGP H D F EPKDV RY + + + +PT+ AF+GDTLHFLS ++ LF +
Sbjct: 106 RGPQHNDLFFYTTHEPKDVIRYQSEDQTADMFRVPTSTAFIGDTLHFLSLKYLHRLFLKN 165
Query: 4374 PKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT 4195
P L TLYAT+VLPPEA+YR+ S+YP+IY + Y EDGF+YIPGGH GA+YFH YD L WL
Sbjct: 166 PNLNTLYATMVLPPEAMYRMASIYPEIYQIQYQEDGFLYIPGGHGGAAYFHTYDTLTWLR 225
Query: 4194 VGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYN 4015
VG A + T+T Q+LETKGANHLFI QR + TP+ RTF +VT+P+IFLP+ N
Sbjct: 226 VGQFQA-KEFTLTFQKLETKGANHLFIIQRADLKTPKYRTFVPRRKWVTLPNIFLPKHTN 284
Query: 4014 CRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTA 3835
R PI K MMQ+F Y KSVKE RD++AK RQLI TK+L+ + P E+ L NY T+
Sbjct: 285 ARKPILKQTMMQLFLYEKSVKEITFRDVFAKIRQLIQTKDLEQFDPDELVRLANYVMHTS 344
Query: 3834 SLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 3670
L +E + +Q L+ P+++ + Q + G + +L KAL W + L
Sbjct: 345 KLLEKNPYELIEGQGKLQDLVNPIKTWVSEKWQDWFGWKDYTRLTKALKWVDVDL 399