BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00000001
         (1923 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1031   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1023   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1018   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...  1015   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1015   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1014   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1014   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1014   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1014   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1012   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   909   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             750   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   747   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   719   0.0  
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   684   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               673   0.0  
gb|AFM77886.1| replicase [Hosta virus X]                              669   0.0  
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   669   0.0  
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   669   0.0  
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   640   0.0  

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1031 bits (2665), Expect = 0.0
 Identities = 506/546 (92%), Positives = 520/546 (95%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQ
Sbjct: 820  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQ 879

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEFSA                VE+ TT LDDF+E
Sbjct: 880  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFRE 939

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+E
Sbjct: 940  ELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIE 999

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS+NQ+KGGERRQ
Sbjct: 1000 EFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQ 1059

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1060 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1119

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
            SPNNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1120 SPNNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1179

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAG
Sbjct: 1180 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAG 1239

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1240 DDCAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1299

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDLVKF
Sbjct: 1300 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDLVKF 1359

Query: 1623 GGSPFL 1640
            GGSPFL
Sbjct: 1360 GGSPFL 1365


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1023 bits (2646), Expect = 0.0
 Identities = 504/546 (92%), Positives = 514/546 (94%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL 
Sbjct: 952  ELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+ QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+AL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
            SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGSPFL
Sbjct: 1372 GGSPFL 1377


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1018 bits (2632), Expect = 0.0
 Identities = 501/546 (91%), Positives = 513/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score = 1015 bits (2625), Expect = 0.0
 Identities = 496/546 (90%), Positives = 515/546 (94%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQ
Sbjct: 163  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQ 222

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVRED++ EFSA                VED TTTLDDF+E
Sbjct: 223  SSAFWEKLEATPYLKTFLSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFRE 282

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF +AHGHTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL 
Sbjct: 283  ELQDKFDREIFNQAHGHTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLA 342

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS+ QIKGG+RRQ
Sbjct: 343  EFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQ 402

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 403  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 462

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 463  RPNNIMINCEKTPQDLSRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 522

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAG
Sbjct: 523  EWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAG 582

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAI+QVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 583  DDCAISQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 642

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKF
Sbjct: 643  SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKF 702

Query: 1623 GGSPFL 1640
            GGSPFL
Sbjct: 703  GGSPFL 708


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1015 bits (2624), Expect = 0.0
 Identities = 499/546 (91%), Positives = 512/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 500/546 (91%), Positives = 512/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 500/546 (91%), Positives = 512/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 500/546 (91%), Positives = 512/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1014 bits (2621), Expect = 0.0
 Identities = 499/546 (91%), Positives = 511/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ
Sbjct: 832  KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 891

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKIEEF+A                VED TTTLDDFKE
Sbjct: 892  SSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKE 951

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL 
Sbjct: 952  ELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLA 1011

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQ
Sbjct: 1012 EFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQ 1071

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1072 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1131

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1132 RPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1191

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1192 EWVIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAG 1251

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1252 DDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1311

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKF
Sbjct: 1312 SLELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKF 1371

Query: 1623 GGSPFL 1640
            GGS FL
Sbjct: 1372 GGSSFL 1377


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1012 bits (2617), Expect = 0.0
 Identities = 496/546 (90%), Positives = 513/546 (93%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQ
Sbjct: 837  KAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQ 896

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVREDKI EF A                VE+  TTLDDFKE
Sbjct: 897  SSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKE 956

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+E
Sbjct: 957  ELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIE 1016

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK++ Q+KGGERRQ
Sbjct: 1017 EFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQ 1076

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDAL
Sbjct: 1077 SPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 1136

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
            SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP
Sbjct: 1137 SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1196

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAG
Sbjct: 1197 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAG 1256

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA
Sbjct: 1257 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1316

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKF
Sbjct: 1317 SLELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKF 1376

Query: 1623 GGSPFL 1640
            GGSPFL
Sbjct: 1377 GGSPFL 1382


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  909 bits (2350), Expect = 0.0
 Identities = 445/546 (81%), Positives = 483/546 (88%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAF DAGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQ
Sbjct: 813  KAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQ 872

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFWEKLEATPYLKTFLSLVRE K+EEF+A                VE+ + TL   ++
Sbjct: 873  SSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQD 932

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
            SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL 
Sbjct: 933  SLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLA 992

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQ
Sbjct: 993  EFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQ 1052

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL
Sbjct: 1053 SPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDAL 1112

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLP
Sbjct: 1113 GPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLP 1172

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+  AQ+YAG
Sbjct: 1173 EWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAG 1232

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+
Sbjct: 1233 DDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHS 1292

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP QAHLHQVTVRDL KF
Sbjct: 1293 SLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAHLHQVTVRDLTKF 1352

Query: 1623 GGSPFL 1640
            GGSPFL
Sbjct: 1353 GGSPFL 1358


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  750 bits (1937), Expect = 0.0
 Identities = 375/546 (68%), Positives = 423/546 (77%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            K+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+   
Sbjct: 839  KSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPT 898

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
             S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  + E
Sbjct: 899  HSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAYME 958

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN E
Sbjct: 959  KVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWE 1018

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K +N +K GERRQ
Sbjct: 1019 EFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQ 1078

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+ L
Sbjct: 1079 SPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREVL 1138

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQDGAMLQFEILKAK+FN+P
Sbjct: 1139 GPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIP 1198

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            E +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAG
Sbjct: 1199 EEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAG 1258

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL A
Sbjct: 1259 DDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFA 1318

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR LVK 
Sbjct: 1319 SLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLVKL 1376

Query: 1623 GGSPFL 1640
                +L
Sbjct: 1377 TKGTYL 1382


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  747 bits (1928), Expect = 0.0
 Identities = 374/546 (68%), Positives = 422/546 (77%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            K+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+   
Sbjct: 839  KSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPT 898

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
             S+FWEKLEATPYLK FLS VRE+ I                     VE+ +  L  + E
Sbjct: 899  HSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYME 958

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN E
Sbjct: 959  KVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWE 1018

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K +N +K GERRQ
Sbjct: 1019 EFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQ 1078

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL
Sbjct: 1079 SPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREAL 1138

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             PN+I INCE TP+DLSR++ NYWDF   SYANDFTAFDQSQD AMLQFEILKAK+FN+P
Sbjct: 1139 GPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIP 1198

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
              +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAG
Sbjct: 1199 GEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAG 1258

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD AIA V PE+PSF L+   +AL+AKP Y PQ  G WAEFCGYLITPKGLIKDP KL A
Sbjct: 1259 DDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFA 1318

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            SL+L +A   +G K  +     NY  D  LAY+L D L ++LSP QA LHQ TVR LVK 
Sbjct: 1319 SLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQETVRTLVKL 1376

Query: 1623 GGSPFL 1640
                +L
Sbjct: 1377 TKGAYL 1382


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  719 bits (1856), Expect = 0.0
 Identities = 368/551 (66%), Positives = 419/551 (76%), Gaps = 5/551 (0%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KAAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+   
Sbjct: 907  KAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPT 966

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SS FWEKLEATPYLKTFLS+VREDKI E+                  VE+  T L++F E
Sbjct: 967  SSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTE 1026

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L+ K EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIKARL IS  + N  
Sbjct: 1027 ELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWT 1086

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q+TYL KS   +K GERRQ
Sbjct: 1087 EFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQ 1145

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD  
Sbjct: 1146 SPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIY 1205

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+P
Sbjct: 1206 MPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIP 1265

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWV+EGYLDIKL  +IFLGTLSIMRLTGE  TFDANTECNIAYTHTRF+IPEG AQ    
Sbjct: 1266 EWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ---- 1321

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDP 1427
             D A+   C EKPSF L+++ ++L+      KP    Q  G+WAEFCGYLITPKGLIKDP
Sbjct: 1322 -DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDP 1380

Query: 1428 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVR 1607
            LKL AS  LAK + K      + N + NY+ D KLAY LGDDL +LL+P QA LHQVTVR
Sbjct: 1381 LKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTPEQAQLHQVTVR 1436

Query: 1608 DLVKFGGSPFL 1640
            D++K G S  L
Sbjct: 1437 DMIKLGASDIL 1447


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  684 bits (1764), Expect = 0.0
 Identities = 338/546 (61%), Positives = 408/546 (74%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            K  + + G+K STYAGCQGITAPR+QILLD DTT+C  EVLYTALSRAV  IHF+N+ A 
Sbjct: 1160 KRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVHGIHFINTGAT 1219

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            S AFW+KL ATPYLKTFL   RE++++E                   VE++   L++  E
Sbjct: 1220 SGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVENEKFVLEEQVE 1279

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL IS P+AN+ 
Sbjct: 1280 ELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIA 1339

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K IN +K GE RQ
Sbjct: 1340 EFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPINMLKNGEYRQ 1399

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+A 
Sbjct: 1400 SPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMREAF 1459

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P  IMINCEK PQ LS W+ NYW F+  +YANDFT FDQSQDGAMLQFEILKAK+ ++P
Sbjct: 1460 QPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQDGAMLQFEILKAKHHSIP 1519

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIAYTH RF++P+GTAQ+YAG
Sbjct: 1520 EWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIAYTHLRFDVPKGTAQLYAG 1579

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD A++ + PE+PSFA  K ++ L +KPA   Q+RG WAEFCGYLITP G++KDP KL A
Sbjct: 1580 DDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFCGYLITPLGIMKDPAKLAA 1639

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            ++ LA+ Q K      +     +++LD KLAY   D L ++LS +Q  LHQ+TVR LVK 
Sbjct: 1640 TVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVLSEKQQELHQLTVRTLVKS 1693

Query: 1623 GGSPFL 1640
            G S  L
Sbjct: 1694 GASEIL 1699


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  673 bits (1737), Expect = 0.0
 Identities = 327/546 (59%), Positives = 410/546 (75%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            K ++T+ G+K STYAGCQGITA RVQ+LLD DTT+C+ +VLYTALSRAV ++HF+N++A 
Sbjct: 1128 KRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSDQVLYTALSRAVHAVHFINTSAT 1187

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            SSAFW+KL +TPYLKTFLS +RED++ E                   VE++  +L+D  E
Sbjct: 1188 SSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEEPKPATTHFPVENENLSLEDKVE 1247

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L +K ERE+++  HG++NCVQ DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+E
Sbjct: 1248 ELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANME 1307

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            EFR KK++GD+LW NY +AMKLP +  EFS +LW  CAEEVQ TYL K +N IK GE RQ
Sbjct: 1308 EFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQ 1367

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASFQQ  VMLYGTMARYMRR R A 
Sbjct: 1368 SPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAF 1427

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P NI +NCE+TPQ L+ ++ + W F +P+YANDFT FDQSQDGAMLQFE+LKAK+ N+P
Sbjct: 1428 QPPNIQLNCEQTPQQLTTFIKDQWSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHHNIP 1487

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            E +I+GY+DIK + K+F G L+IMRLTGEGPTFDANTECNIA+ HTRF I + TAQ+YAG
Sbjct: 1488 EAIIQGYIDIKTNAKVFTGVLAIMRLTGEGPTFDANTECNIAFNHTRFHISDDTAQLYAG 1547

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD A +++  EK SF  +  ++AL +KP +  Q++G+WAEFCGY ITP GLIK+P KL A
Sbjct: 1548 DDTAFSKIPIEKVSFQGVAKQLALTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKKLQA 1607

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            +L LA  Q K  +KD ++    +YS D  LAY   D+L ++    Q   HQ TVR LVKF
Sbjct: 1608 NLTLAIKQNK--IKDTVN----SYSQDVALAYQHKDELYEIFDENQMRDHQTTVRTLVKF 1661

Query: 1623 GGSPFL 1640
            GG+  L
Sbjct: 1662 GGNEIL 1667


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  669 bits (1726), Expect = 0.0
 Identities = 332/542 (61%), Positives = 396/542 (73%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KA   + GHK STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS   
Sbjct: 912  KATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNSGPF 971

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            +  FW KLEATPYLKTFL L RE+KI E +                 VE          E
Sbjct: 972  NGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITE 1031

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++
Sbjct: 1032 EMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQ 1091

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K IN IK GE+RQ
Sbjct: 1092 ELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQ 1151

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
             PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD  
Sbjct: 1152 GPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRF 1211

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+P
Sbjct: 1212 CPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIP 1271

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            E +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAG
Sbjct: 1272 EDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAG 1331

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHA
Sbjct: 1332 DDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHA 1391

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            S  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q   HQVTVR+LVKF
Sbjct: 1392 SWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCRTHQVTVRELVKF 1447

Query: 1623 GG 1628
             G
Sbjct: 1448 AG 1449


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  669 bits (1726), Expect = 0.0
 Identities = 323/546 (59%), Positives = 402/546 (73%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            K  +T+ G+K STYAGCQGITAP+VQ+LL++DTT+CT +VLYTALSRAV SIHF+N++A 
Sbjct: 959  KKTYTELGYKTSTYAGCQGITAPKVQVLLNSDTTLCTDKVLYTALSRAVHSIHFINTSAS 1018

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            S+AFW+KL ATPYLKTFLS VRE  +                     VE+    L+   E
Sbjct: 1019 SAAFWDKLNATPYLKTFLSTVREQSLASAKPREEGPTPVAAPKTHVPVENSNLCLEGAVE 1078

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             L +K +REIF   HGH+NCVQ D+PT QL SHQQAKD+ LLW TI+ARL ISTPE NL 
Sbjct: 1079 KLLEKHDREIFRADHGHSNCVQTDNPTIQLSSHQQAKDQTLLWATIEARLKISTPERNLA 1138

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            E+  K+++GD+LW +Y  AM LP+E   F + LW  CAEEVQ TYL K ++ +K GE RQ
Sbjct: 1139 EYLMKREVGDVLWLHYKNAMNLPEEPIPFEQTLWDTCAEEVQKTYLSKPMHMLKNGELRQ 1198

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
            SPDFH++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+  
Sbjct: 1199 SPDFHKNTIALFLKSQWVKKMEKLGADKIKPGQTIASFQQAAVMLYGTMARYMRRMREVF 1258

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P ++ INCE++P+ +S W+ N W+F   +YANDFT FDQSQDGAMLQFEILKAK+ ++P
Sbjct: 1259 QPTHVFINCEQSPEGMSDWIKNEWNFKGNAYANDFTQFDQSQDGAMLQFEILKAKHHSIP 1318

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            EWV+EGYLDIK +  +F GTL IMRLTGEGPTFDANTECNIAYTH RF +P+GTAQ YAG
Sbjct: 1319 EWVLEGYLDIKTNAHVFTGTLGIMRLTGEGPTFDANTECNIAYTHLRFNVPKGTAQAYAG 1378

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD  +A +  E+ SF + KN++ L AKP Y PQ +G+WA+FCG+L TP G +K+PLK+ A
Sbjct: 1379 DDSVLACIPEERESFKMWKNKLELTAKPEYFPQMQGEWAQFCGFLFTPLGALKEPLKMLA 1438

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
             +ELAK       +  +   + +Y+LD  L Y  GD LQ + S +Q   HQ+TVR+L+KF
Sbjct: 1439 VVELAKQ------RGELKKNMRSYALDVLLNYQHGDALQHVFSEKQLEAHQITVRNLIKF 1492

Query: 1623 GGSPFL 1640
            GGS  L
Sbjct: 1493 GGSSIL 1498


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  669 bits (1726), Expect = 0.0
 Identities = 332/542 (61%), Positives = 396/542 (73%)
 Frame = +3

Query: 3    KAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 182
            KA   + GHK STYAGCQG+T  +VQI LD++TT+C+ EVLYTALSRAV+ I+FVNS   
Sbjct: 946  KATLEELGHKCSTYAGCQGVTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNSGPF 1005

Query: 183  SSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 362
            +  FW KLEATPYLKTFL L RE+KI E +                 VE          E
Sbjct: 1006 NGPFWAKLEATPYLKTFLRLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITE 1065

Query: 363  SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 542
             + +K  REI+ + HGHTNCVQ D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++
Sbjct: 1066 EMPEKHAREIYNKTHGHTNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQ 1125

Query: 543  EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQ 722
            E   K+D+GD+L+  YHKAM LPK+   F  DLW  CA+EVQ TYL K IN IK GE+RQ
Sbjct: 1126 ELNEKRDIGDLLFHAYHKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQ 1185

Query: 723  SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 902
             PDF ++ I++FLKSQWVKKMEKLGA  IKPGQTIASF Q  VMLYGTMARYMRR RD  
Sbjct: 1186 GPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRF 1245

Query: 903  SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 1082
             P +I+INCEKTP  +S +V   WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+P
Sbjct: 1246 CPKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIP 1305

Query: 1083 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 1262
            E +I GY+DIK + KIFLGTL+IMRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAG
Sbjct: 1306 EDIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAG 1365

Query: 1263 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 1442
            DD A+++VCPEK SF    +R+ L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHA
Sbjct: 1366 DDSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHA 1425

Query: 1443 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKF 1622
            S  LA    K G    I   + +Y  D KL+Y LGD LQ+LLS  Q   HQVTVR+LVKF
Sbjct: 1426 SWVLA---TKLGTLQQI-KCVNSYGEDLKLSYDLGDHLQELLSESQCRTHQVTVRELVKF 1481

Query: 1623 GG 1628
             G
Sbjct: 1482 AG 1483


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  640 bits (1652), Expect = 0.0
 Identities = 309/529 (58%), Positives = 392/529 (74%)
 Frame = +3

Query: 39   TYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATP 218
            TYAGCQG+T P+VQI+LD++T +C+  V+YTALSRA D IHFVN++A SSAFWEKL++TP
Sbjct: 921  TYAGCQGLTKPKVQIVLDHNTQVCSTNVMYTALSRATDRIHFVNTSANSSAFWEKLDSTP 980

Query: 219  YLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFT 398
            YLKTFLS+VRE  ++E+                  VE++ + L+++KE L +KF+REI +
Sbjct: 981  YLKTFLSVVREQTLKEYEPAEVEPIREPEPQTHMCVENEESVLEEYKEELLEKFDREIHS 1040

Query: 399  EAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDIL 578
            E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL  S  E N  EF +KKD+GD+L
Sbjct: 1041 ESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVL 1100

Query: 579  WANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSINQIKGGERRQSPDFHEHQILIF 758
            + NY KAM LPKE+  FS+++W  CA EVQ+ YL KS   +  G  RQSPDF E++I++F
Sbjct: 1101 FLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVF 1160

Query: 759  LKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKT 938
            LKSQWV K+EKLG  KIKPGQTIA+F Q  VML+GTMARYMR FR A  P  + INCE T
Sbjct: 1161 LKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETT 1220

Query: 939  PQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKL 1118
            P+D+S W LN W+F +PS AND+TAFDQSQDGAMLQFE+LKAK+  +PE +I+ Y+DIK 
Sbjct: 1221 PEDMSAWALNNWNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKT 1280

Query: 1119 SPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEK 1298
            + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTAQ+YAGDD A+  V   K
Sbjct: 1281 NAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVK 1340

Query: 1299 PSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAG 1478
            PSF  L++++ L++KP  T Q++G W EFCG+LITPKG++KDP+KLH SL+LA+A     
Sbjct: 1341 PSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEA----- 1395

Query: 1479 VKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFG 1625
             K  +     +Y +D   AY   D L DL   +Q   H +T R L+K G
Sbjct: 1396 -KGELKKCQDSYEIDLSYAYDHKDSLHDLFDEKQCQAHTLTCRTLIKSG 1443