BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00030174
         (626 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia...   141   7e-46
gb|AAC35532.1| contains similarity to proteases [Arabidopsis tha...   141   7e-46
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...   127   5e-42
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...   127   2e-41
emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]   113   7e-40
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   127   6e-39
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           115   3e-38
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]         117   5e-38
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...   123   4e-37
ref|XP_006367809.1| PREDICTED: uncharacterized protein LOC102582...   159   8e-37
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   110   3e-34
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   115   5e-34
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...   110   9e-34
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   114   2e-33
emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|72697...   145   9e-33
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   105   5e-32
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   104   3e-31
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  104   3e-31
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G...   105   3e-31
gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japo...   105   3e-31

>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
           gi|7267767|emb|CAB81170.1| retrotransposon like protein
           [Arabidopsis thaliana]
          Length = 1515

 Score =  141 bits (356), Expect(2) = 7e-46
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           +   +G L L+DVLV P +TK+LLSV KLT D  C+F F +++ V+KD R Q+++ +G+K
Sbjct: 371 LNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNK 430

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LYVL D   +   + R+ SS    WHQRLGHPN ++L  L +   I +    T  ++
Sbjct: 431 HKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNK--TSSNM 488

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +CQMGK C+LPF  S  +S  PLE+IH DLWGPAP
Sbjct: 489 CEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAP 525



 Score = 68.9 bits (167), Expect(2) = 7e-46
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +1

Query: 478 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQF 618
           ++S QG ++Y IF+D+YSRFTW YPLK KS+FF  F  FQ+LVENQ+
Sbjct: 526 VTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQY 572


>gb|AAC35532.1| contains similarity to proteases [Arabidopsis thaliana]
          Length = 1392

 Score =  141 bits (356), Expect(2) = 7e-46
 Identities = 73/157 (46%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           +   +G L L+DVLV P +TK+LLSV KLT D  C+F F +++ V+KD R Q+++ +G+K
Sbjct: 374 LNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNK 433

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LYVL D   +   + R+ SS    WHQRLGHPN ++L  L +   I +    T  ++
Sbjct: 434 HKGLYVLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNK--TSSNM 491

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +CQMGK C+LPF  S  +S  PLE+IH DLWGPAP
Sbjct: 492 CEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAP 528



 Score = 68.9 bits (167), Expect(2) = 7e-46
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +1

Query: 478 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQF 618
           ++S QG ++Y IF+D+YSRFTW YPLK KS+FF  F  FQ+LVENQ+
Sbjct: 529 VTSAQGFQYYVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQY 575


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score =  127 bits (319), Expect(2) = 5e-42
 Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARGHK 185
           I +  G++ LK+VLV P++ K+LLSV KLTSD  C+ EF A++  + D+  ++++  G  
Sbjct: 373 IASSSGKIPLKEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRN 432

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
           R  LY L++   + L + R+ S+SS  WH+RLGH N+++L  L     I I + V + ++
Sbjct: 433 RDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSIIIINKVVK-TV 491

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +C +GKS +LPF  S   +  PLE+IH DLWGP+P
Sbjct: 492 CEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSP 528



 Score = 70.5 bits (171), Expect(2) = 5e-42
 Identities = 31/45 (68%), Positives = 35/45 (77%)
 Frame = +1

Query: 481 SSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQ 615
           SS QG R+Y +F+D YSRFTW YPLK KS+FF  F  FQKLVENQ
Sbjct: 530 SSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQ 574


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score =  127 bits (319), Expect(2) = 2e-41
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 2/158 (1%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARGHK 185
           + +  G + L DVLV P++TK+LLSV KLT D  CT EF ++   + D+  ++++  G  
Sbjct: 379 LASSSGNVPLTDVLVCPSITKSLLSVSKLTQDYPCTVEFDSDGVRINDKATKKLLIMGST 438

Query: 186 RGQLYVLDDNFQ-EALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPS 362
              LY L D+ Q +A  + R+ S+S   WH+RLGHP+ ++L  L + N I+I    T  S
Sbjct: 439 CDGLYCLKDDSQFKAFFSTRQQSASDEVWHRRLGHPHPQVLQQLVKTNSISINK--TSKS 496

Query: 363 ICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           +C +CQ+GKS +LPF  S+  S  PLE++H DLWGP+P
Sbjct: 497 LCEACQLGKSTRLPFVSSSFTSNRPLERVHCDLWGPSP 534



 Score = 68.6 bits (166), Expect(2) = 2e-41
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +1

Query: 478 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFD 621
           ++S QG R+YA+F+D YSRF+W+YPLK KS+F++ F  F KLVENQ +
Sbjct: 535 ITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAFHKLVENQLN 582


>emb|CAN74381.1| hypothetical protein VITISV_007944 [Vitis vinifera]
          Length = 1884

 Score =  113 bits (282), Expect(2) = 7e-40
 Identities = 58/140 (41%), Positives = 83/140 (59%)
 Frame = +3

Query: 57  PNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQRIIARGHKRGQLYVLDDNFQEALSA 236
           PN   +  +   +T+D     EF++  FV+KD+LQ+++ARG K+G LY L++N  +A++ 
Sbjct: 354 PNFYVDSGATAHITNDP----EFSSTGFVIKDQLQQVLARGTKKGGLYALEENVIQAMTV 409

Query: 237 IRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSICASCQMGKSCKLPFQQS 416
            R   +SS  WHQR+ HP +K + LL +   I               ++GKSCKLPF   
Sbjct: 410 TRSSKASSEVWHQRMXHPQTKSIKLLXDKKFI---------------ELGKSCKLPFGLR 454

Query: 417 NKISKYPLEKIHSDLWGPAP 476
           NKIS  PL+KIH DLWG AP
Sbjct: 455 NKISSNPLDKIHCDLWGXAP 474



 Score = 77.4 bits (189), Expect(2) = 7e-40
 Identities = 30/48 (62%), Positives = 42/48 (87%)
 Frame = +1

Query: 481 SSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           +S QG ++Y +F+DD++R+TWLYPL+RKS+FF+CF KFQ LVENQ +R
Sbjct: 476 NSTQGYKYYXVFIDDHTRYTWLYPLRRKSDFFECFLKFQILVENQLER 523


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  127 bits (320), Expect(2) = 6e-39
 Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
 Frame = +3

Query: 3   ACITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQ-RIIARG 179
           A + +  G L LKDVLV PN+ K+LLSV KLT D  C+F F A+  +VKD+   +++ +G
Sbjct: 359 ANLPSTSGNLPLKDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCKVLTKG 418

Query: 180 HKRGQ-LYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTR 356
               + LY L++   +   + R+  ++   WH RLGHPN ++L LL     I I    ++
Sbjct: 419 SSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQINKSTSK 478

Query: 357 PSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
             +C SC++GKS +LPF  S+ I+  PLE++H DLWGPAP
Sbjct: 479 --MCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAP 516



 Score = 59.7 bits (143), Expect(2) = 6e-39
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +1

Query: 478 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVEN 612
           +SS QG ++Y IF+D+ SRF W YPLK KS+F   F KFQ  VEN
Sbjct: 517 VSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVEN 561


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  115 bits (288), Expect(2) = 3e-38
 Identities = 67/161 (41%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           I++  G L L +VLV P++ K+LLSV KL  D  C   F AN   + D   Q+++++G +
Sbjct: 372 ISSDSGTLPLNEVLVCPDIQKSLLSVSKLCDDYPCGVYFDANKVCIIDINTQKVVSKGPR 431

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LYVL++    A  + R+ ++S   WH RLGH NS+IL  LK    I+       P +
Sbjct: 432 SNGLYVLENQEFVAFYSNRQCAASEEIWHHRLGHSNSRILQQLKSSKEISFNKSRMSP-V 490

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFVFK 488
           C  CQMGKS KL F  SN      L +IH DLWGP+P V K
Sbjct: 491 CEPCQMGKSSKLQFFSSNSRELDLLGRIHCDLWGPSPVVSK 531



 Score = 69.7 bits (169), Expect(2) = 3e-38
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = +1

Query: 484 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFD 621
           S QG ++Y +FVDDYSR++W YPLK KS+FF  F  FQ LVENQF+
Sbjct: 530 SKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFN 575


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  117 bits (293), Expect(2) = 5e-38
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           I++ +G + L +VLV P + K+LLSV KL  D  C   F AN   + D   Q+++++G +
Sbjct: 371 ISSSKGTIPLNEVLVCPAIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLTTQKVVSKGPR 430

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LY+L+++   AL + R+ ++S   WH RLGH NSKIL  L     I +    T P +
Sbjct: 431 NNGLYMLENSEFVALYSNRQCAASMETWHHRLGHSNSKILQQLLTRKEIQVNKSRTSP-V 489

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFV 482
           C  CQMGKS +L F  S+  +  PL+++H DLWGP+P V
Sbjct: 490 CEPCQMGKSTRLQFFSSDFRALKPLDRVHCDLWGPSPVV 528



 Score = 67.0 bits (162), Expect(2) = 5e-38
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +1

Query: 484 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQ 615
           SNQG ++YA+FVDD+SRF+W +PL+ KS+F   F  +QKLVENQ
Sbjct: 529 SNQGFKYYAVFVDDFSRFSWFFPLRMKSKFISVFIAYQKLVENQ 572


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score =  123 bits (308), Expect(2) = 4e-37
 Identities = 66/161 (40%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   ACITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARG 179
           A I +  G L L DVLV P + K LLSV K T+D  C F+F A+N  + D+  ++++ +G
Sbjct: 376 ASIASSSGNLILNDVLVCPQIAKPLLSVSKFTTDYPCGFDFDADNVCIYDKATKKVLLQG 435

Query: 180 HKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRP 359
                LY + +    A  + R+ ++S   WHQRLGHPN  IL  L     + I       
Sbjct: 436 RNTKGLYSIKEPAFHAFFSTRQVAASDEVWHQRLGHPNPHILQRLASIKSVFINK--RSK 493

Query: 360 SICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFV 482
           S+C SCQM KS +LPF  S  ++  PLE+IH D+WGP+P V
Sbjct: 494 SLCVSCQMAKSSRLPFSASQFVATRPLERIHCDVWGPSPVV 534



 Score = 58.2 bits (139), Expect(2) = 4e-37
 Identities = 22/45 (48%), Positives = 33/45 (73%)
 Frame = +1

Query: 484 SNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQF 618
           S Q  ++Y + +D+YSR+ W+YP+K+KS+F   F  FQ LV+NQF
Sbjct: 535 SVQEFKYYVVLIDNYSRYCWMYPMKKKSDFHSIFIAFQSLVQNQF 579


>ref|XP_006367809.1| PREDICTED: uncharacterized protein LOC102582397, partial [Solanum
            tuberosum]
          Length = 794

 Score =  159 bits (401), Expect = 8e-37
 Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
 Frame = +3

Query: 30   LNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHKRGQLYVL 206
            L LK+VL VP + K +LSV KL  DN CT EF   NFVVKD+  R ++A+G KR +LY L
Sbjct: 636  LKLKEVLEVPKIKKKILSVSKLAKDNCCTLEFDETNFVVKDKRTRTLLAKGSKRNELYAL 695

Query: 207  DDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSICASCQMG 386
            ++N   AL+A    ++S   WH +LGHP+ K L +L  ++ INI+SW   P++C+SCQ+G
Sbjct: 696  ENNNLYALTAAHDWNTSGNMWHTKLGHPSLKYLKVLSSNSFINISSWNKMPTVCSSCQLG 755

Query: 387  KSCKLPFQQSNKISKYPLEKIHSDLWGPA 473
            KSCKLPF   NKI K PL KI  DLWG A
Sbjct: 756  KSCKLPFGLRNKIEKEPLLKIPCDLWGLA 784


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score =  110 bits (274), Expect(2) = 3e-34
 Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
 Frame = +3

Query: 3   ACITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARG 179
           A + T    L+LK+VL VP   KNL+SV KL +DN+   E     F++KD+  +R I  G
Sbjct: 358 AIVPTPSHPLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEG 417

Query: 180 HKRGQLYVLDDNFQEALSAIRKG---SSSSTRWHQRLGHPNSKILSLLKEHNIINITSWV 350
             R  LY L      A S++R+    + S  RWH RLGHP+  I+  +   N +   S  
Sbjct: 418 PCRRGLYPLP-----ARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNS 472

Query: 351 TRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 473
              S+C +CQ  K  +LPF +S  +S  PLE IHSD+WGPA
Sbjct: 473 VNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGPA 513



 Score = 61.6 bits (148), Expect(2) = 3e-34
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           ++Y  F+DDYS+F W+Y LK KSE F  F +FQKLVE QFDR
Sbjct: 521 KYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVERQFDR 562


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
           Group]
          Length = 1399

 Score =  115 bits (288), Expect(2) = 5e-34
 Identities = 65/157 (41%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHK 185
           I T   EL+LK++L VP   KNL+S  +L  DNF   E  +N F++KDR  R  I +G  
Sbjct: 335 IHTPTRELHLKNILHVPQAKKNLISAHRLAMDNFAFLEVHSNYFLIKDRATRNTILKGRC 394

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
           R +LY L  +  + + A    S S  RWH RLGHP   I++ +   N +  ++   + SI
Sbjct: 395 RRRLYSLPTSPAKQVHAATTPSFS--RWHSRLGHPAVPIVTRVLSKNNLPCSTVANKDSI 452

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +CQ GKS +LP+ +S+ +S  PLE I S++WGPAP
Sbjct: 453 CDACQKGKSHQLPYPKSSSVSSQPLELIFSNVWGPAP 489



 Score = 55.5 bits (132), Expect(2) = 5e-34
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = +1

Query: 493 GCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQF 618
           G +FY  F+DDYS+FTW+Y LK KSE F  F +FQ LVE  F
Sbjct: 494 GKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQTLVERFF 535


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1202

 Score =  110 bits (274), Expect(2) = 9e-34
 Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
 Frame = +3

Query: 3   ACITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARG 179
           A + T    L+LK+VL VP   KNL+SV KL +DN+   E     F++KD+  +R I  G
Sbjct: 367 AIVPTPSRPLHLKNVLHVPEAAKNLVSVHKLVADNYAFLEIHGKYFLIKDKATRRTILEG 426

Query: 180 HKRGQLYVLDDNFQEALSAIRKG---SSSSTRWHQRLGHPNSKILSLLKEHNIINITSWV 350
             R  LY L      A S++R+    + S  RWH RLGHP+  I+  +   N +   S  
Sbjct: 427 PCRRGLYPLP-----ARSSLRQAFVATPSFVRWHGRLGHPSKPIVLRILSQNKLPCLSNS 481

Query: 351 TRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 473
              S+C +CQ  K  +LPF +S  +S  PLE IHSD+WGPA
Sbjct: 482 VNESVCDACQQAKCHQLPFPRSTSVSNNPLELIHSDVWGPA 522



 Score = 60.1 bits (144), Expect(2) = 9e-34
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           ++Y  F+DDYS+F W+Y LK KSE F  F +FQKLVE QFDR
Sbjct: 530 KYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVEWQFDR 571


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score =  114 bits (285), Expect(2) = 2e-33
 Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 9/164 (5%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           + T   +++L+++L VPN  KNL+S  +L SDN    E  +  F +KD   ++++ RG  
Sbjct: 366 VRTPNRDIHLRNILYVPNANKNLVSANRLVSDNSAYMELYSKYFNLKDLATKKLLFRGPC 425

Query: 186 RGQLYVLDDN--------FQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINIT 341
           RG+LY L  +         +EA  AI+    S  RWH RLGHP S I+  +   N +   
Sbjct: 426 RGRLYALPSSSPHERPRPLKEAFGAIKP---SFERWHSRLGHPASPIVEKVISKNNLPCL 482

Query: 342 SWVTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPA 473
           +   + S+C +CQ GKS +LP+ +S+ +S +PLE I+SD+WGPA
Sbjct: 483 AESNKQSVCDACQQGKSHQLPYSRSSSMSSHPLELIYSDVWGPA 526



 Score = 54.3 bits (129), Expect(2) = 2e-33
 Identities = 25/49 (51%), Positives = 33/49 (67%)
 Frame = +1

Query: 478 LSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           L+S  G ++Y  F+ DYS+FTWLY +K KSE    F +FQ LVE  F+R
Sbjct: 527 LTSVGGKQYYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQALVERLFNR 575


>emb|CAB43904.1| putative protein [Arabidopsis thaliana] gi|7269745|emb|CAB81478.1|
           putative protein [Arabidopsis thaliana]
          Length = 1415

 Score =  145 bits (366), Expect = 9e-33
 Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
 Frame = +3

Query: 3   ACITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRL-QRIIARG 179
           A +T+ +G L L+DVLV PN+TK+LLSV KLTSD  C  EF ++  +VKD+L ++++ +G
Sbjct: 338 AVLTSNQGNLPLRDVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTKQLLTKG 397

Query: 180 HKRGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRP 359
            +   LY+L++    A  + R+ ++S   WH RLGHPN  +L  L  +  I I+   T  
Sbjct: 398 TRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVISK--TSH 455

Query: 360 SICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAPFV 482
           S+C +CQMGK CKLPF  S+ +S   LE++H DLWGPAP V
Sbjct: 456 SLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVV 496



 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 33/64 (51%), Positives = 46/64 (71%)
 Frame = +1

Query: 424 SQNILLKRYIVIFGVLHLLSSNQGCRFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKL 603
           S  +L + +  ++G   ++SS QG R+Y IF+D+YSRFTW YPL+ KS+FF  F  FQK+
Sbjct: 478 SSRLLERVHCDLWGPAPVVSS-QGFRYYVIFIDNYSRFTWFYPLRLKSDFFSVFLTFQKM 536

Query: 604 VENQ 615
           VENQ
Sbjct: 537 VENQ 540


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score =  105 bits (262), Expect(2) = 5e-32
 Identities = 63/163 (38%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKD-RLQRIIARGHK 185
           + T    L+LKDVL VP   KNL+S  KLTSDN    E     F +KD  ++R + RG  
Sbjct: 366 VKTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRC 425

Query: 186 RGQLYVL---DDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILS-LLKEHNI--INITSW 347
              LY L     +  +          S  RWH RLGHP+  ++  ++K  N+  ++++  
Sbjct: 426 HKGLYALPSPSSHHHQVKQVYGVTKPSFERWHSRLGHPSYTVVEKVIKSQNLPCLDVSEQ 485

Query: 348 VTRPSICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           V   S+C +CQ  KS +L F +S   SKYPLE + SD+WGPAP
Sbjct: 486 V---SVCDACQKAKSHQLSFPKSTSESKYPLELVFSDVWGPAP 525



 Score = 58.9 bits (141), Expect(2) = 5e-32
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           ++Y  F+DDYS+FTW+Y LK KSE FD F +FQ LVE  F+R
Sbjct: 532 KYYVSFIDDYSKFTWIYLLKYKSEVFDKFHEFQSLVERLFNR 573


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
           sativa Japonica Group]
          Length = 1448

 Score =  104 bits (259), Expect(2) = 3e-31
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHK 185
           + T    ++L +VL VP   KNL+S  +L +DN    E  +  F +KD++ R ++  G  
Sbjct: 372 VHTPSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKC 431

Query: 186 RGQLYVLDDNFQEALSAIRKGSS--SSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRP 359
           R  LY +  +F  + +    G++  S +RWH RLGHP+  I+  +   N +  +      
Sbjct: 432 RHGLYPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQ 491

Query: 360 SICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           S+C +CQ  KS +LP+ +S  +S++PLE + SD+WGPAP
Sbjct: 492 SVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP 530



 Score = 57.4 bits (137), Expect(2) = 3e-31
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           ++Y  F+DD+S+FTW+Y LK KSE F+ F +FQ LVE  FDR
Sbjct: 537 KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDR 578


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  104 bits (259), Expect(2) = 3e-31
 Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHK 185
           + T    ++L +VL VP   KNL+S  +L +DN    E  +  F +KD++ R ++  G  
Sbjct: 372 VHTPSRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKC 431

Query: 186 RGQLYVLDDNFQEALSAIRKGSS--SSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRP 359
           R  LY +  +F  + +    G++  S +RWH RLGHP+  I+  +   N +  +      
Sbjct: 432 RHGLYPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQ 491

Query: 360 SICASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           S+C +CQ  KS +LP+ +S  +S++PLE + SD+WGPAP
Sbjct: 492 SVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP 530



 Score = 57.4 bits (137), Expect(2) = 3e-31
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +1

Query: 499 RFYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           ++Y  F+DD+S+FTW+Y LK KSE F+ F +FQ LVE  FDR
Sbjct: 537 KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDR 578


>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 572

 Score =  105 bits (262), Expect(2) = 3e-31
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHK 185
           + T+  +L LK++L VP   K+L+S  +L  DN    E     F +KD++ R ++ +G  
Sbjct: 315 VRTQHRDLILKNILYVPEANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRC 374

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LY L     + + A  K S S  +WH RLGHP+S I+  +  HN +   S   + S+
Sbjct: 375 ERGLYPLKSFPNKQVFAAIKLSPS--QWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSV 432

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +CQ GKS +LP+ +S   S  PLE IHSD+WGPAP
Sbjct: 433 CDACQKGKSHQLPYSKSLSRSSAPLELIHSDVWGPAP 469



 Score = 56.2 bits (134), Expect(2) = 3e-31
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 502 FYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           +Y  FVDD+S+F+W+Y LK KS+ F CF  FQ  VE  FDR
Sbjct: 477 YYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDR 517


>gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japonica Group]
          Length = 499

 Score =  105 bits (262), Expect(2) = 3e-31
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
 Frame = +3

Query: 9   ITTKEGELNLKDVLVVPNLTKNLLSVGKLTSDNFCTFEFTANNFVVKDRLQR-IIARGHK 185
           + T+  +L LK++L VP   K+L+S  +L  DN    E     F +KD++ R ++ +G  
Sbjct: 242 VRTQHRDLILKNILYVPEANKSLISAHRLAFDNQAFLELFPRYFSIKDQVTRKLLHQGRC 301

Query: 186 RGQLYVLDDNFQEALSAIRKGSSSSTRWHQRLGHPNSKILSLLKEHNIINITSWVTRPSI 365
              LY L     + + A  K S S  +WH RLGHP+S I+  +  HN +   S   + S+
Sbjct: 302 ERGLYPLKSFPNKQVFAAIKLSPS--QWHCRLGHPSSVIVQQVLSHNNLPCVSESNKHSV 359

Query: 366 CASCQMGKSCKLPFQQSNKISKYPLEKIHSDLWGPAP 476
           C +CQ GKS +LP+ +S   S  PLE IHSD+WGPAP
Sbjct: 360 CDACQKGKSHQLPYSKSLSRSSAPLELIHSDVWGPAP 396



 Score = 56.2 bits (134), Expect(2) = 3e-31
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 502 FYAIFVDDYSRFTWLYPLKRKSEFFDCFFKFQKLVENQFDR 624
           +Y  FVDD+S+F+W+Y LK KS+ F CF  FQ  VE  FDR
Sbjct: 404 YYVSFVDDFSKFSWIYLLKHKSDVFQCFHNFQNPVERLFDR 444