BLASTX nr result
ID: Rehmannia24_contig00029634
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00029634
(402 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 63 3e-08
ref|XP_006404675.1| hypothetical protein EUTSA_v10000670mg [Eutr... 63 5e-08
gb|EOY00433.1| Uncharacterized protein TCM_010295 [Theobroma cacao] 63 5e-08
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 63 5e-08
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 62 1e-07
ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutr... 61 1e-07
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 60 4e-07
ref|XP_006404270.1| hypothetical protein EUTSA_v10011157mg, part... 59 5e-07
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ... 59 9e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 57 2e-06
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 57 3e-06
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 57 3e-06
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A... 57 3e-06
ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, part... 57 3e-06
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 57 3e-06
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 57 3e-06
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 56 4e-06
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 55 7e-06
emb|CAN79789.1| hypothetical protein VITISV_039779 [Vitis vinifera] 55 7e-06
emb|CAN75374.1| hypothetical protein VITISV_029152 [Vitis vinifera] 55 7e-06
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 63.2 bits (152), Expect = 3e-08
Identities = 32/103 (31%), Positives = 49/103 (47%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKN 138
+H +PV L+ RGI+ D C C ET++H+LF C A+ VW + ++ G N
Sbjct: 1062 LHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSN 1121
Query: 137 ISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQ 9
+ L N +S ++LW+LWK RN F+
Sbjct: 1122 SVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFE 1164
>ref|XP_006404675.1| hypothetical protein EUTSA_v10000670mg [Eutrema salsugineum]
gi|557105803|gb|ESQ46128.1| hypothetical protein
EUTSA_v10000670mg [Eutrema salsugineum]
Length = 226
Score = 62.8 bits (151), Expect = 5e-08
Identities = 36/96 (37%), Positives = 51/96 (53%)
Frame = -2
Query: 311 DVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNIS 132
D LPV L RR I+VD C CG +T+ HVL NC+ A+ VW LAP+ ++ +
Sbjct: 14 DALPVRVELVRRRIQVDFGCKICGN-PKTITHVLKNCQFARKVWDLAPLKARPHLNMVLC 72
Query: 131 LKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
L +SLL + + +L ++ W LW TRN
Sbjct: 73 LDFLAFILSLLSFPLTGISATSLPVWICWNLWTTRN 108
>gb|EOY00433.1| Uncharacterized protein TCM_010295 [Theobroma cacao]
Length = 290
Score = 62.8 bits (151), Expect = 5e-08
Identities = 34/104 (32%), Positives = 52/104 (50%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKN 138
IHD+LP S L +RG+ +++ C C ET H L NC+ +++VW + I + +
Sbjct: 82 IHDILPTRSELIKRGVNIELMCPLCEIEVETAFHCLCNCQFSRLVWLTTKCGFRDISNFH 141
Query: 137 ISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQK 6
S+ +W V + D LLW +WKTRNV F +
Sbjct: 142 DSIIDWLQGV----FEVLNKDETEEFICLLWAIWKTRNVVVFNQ 181
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 62.8 bits (151), Expect = 5e-08
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNISLK 126
+PV NL++RGI D C CG EE+++H LF C A+ +W L+ + I + S+
Sbjct: 849 VPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSI- 907
Query: 125 EWWMSVSLLPWN-PAFVDRINLSTYLLWWLWKTRNVWQFQKV 3
+ ++ L W P+ VD +++W++WK RN F+ V
Sbjct: 908 --FTNLDHLFWRIPSGVDSAPY-PWIIWYIWKARNEKVFENV 946
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVN-------- 162
IH+ L V +N+++RG+ +D C CGE EET +H+++ C+ + W ++P+
Sbjct: 1071 IHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEA 1130
Query: 161 -----WEGIIHKNISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQK 6
W + EWW ++ WN +W RN W F+K
Sbjct: 1131 GSFRIWVESLLDTHKDTEWWALFWMICWN----------------IWLGRNKWVFEK 1171
>ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutrema salsugineum]
gi|557106756|gb|ESQ47071.1| hypothetical protein
EUTSA_v10028075mg [Eutrema salsugineum]
Length = 343
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = -2
Query: 311 DVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNIS 132
+ PV L RRGI+VD C CG ET+ HVL +C+ A+ VW LAP+ + ++ +
Sbjct: 83 EAFPVGVELVRRGIQVDFACKICGN-PETITHVLRDCQLARKVWNLAPLRTQSHLNTVLC 141
Query: 131 LKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
L +S++ P V +L ++ W LW RN
Sbjct: 142 LDFLAHILSMVSLPPIEVSTTSLPAWICWNLWTPRN 177
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 59.7 bits (143), Expect = 4e-07
Identities = 35/97 (36%), Positives = 46/97 (47%)
Frame = -2
Query: 314 HDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNI 135
H LP + L +R I CG CGEGEET+ H L C AK VWK W G ++K+
Sbjct: 662 HAFLPCVERLFKRNICSHSGCGRCGEGEETVVHSLCWCRVAKKVWKC--TYWRG-VYKSW 718
Query: 134 SLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
+ + L+ + L + WWLWK RN
Sbjct: 719 QISSFADLFGLVAME-GNIKNTELFALICWWLWKDRN 754
>ref|XP_006404270.1| hypothetical protein EUTSA_v10011157mg, partial [Eutrema
salsugineum] gi|557105389|gb|ESQ45723.1| hypothetical
protein EUTSA_v10011157mg, partial [Eutrema salsugineum]
Length = 259
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNISLK 126
LPV +NL R + D +C CG+ E T DH+LF+C+ A+ VW AP + IH++
Sbjct: 13 LPVGTNLASRILGTDPSCHRCGQPEST-DHLLFHCDFARTVWHTAPFSPPISIHQDQQFH 71
Query: 125 EWWMSVSLLPWNPAF-VDRINLSTYLLWWLWKTRN 24
W V +P + + L+ ++ W LWK RN
Sbjct: 72 YLWKDVKDTSCSPPLDLPKGLLAPWICWNLWKARN 106
>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 1555
Score = 58.5 bits (140), Expect = 9e-07
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNISLK 126
+PV L R I +D C CG E ++ H+LF+C+ A+ VW LAP+ I L
Sbjct: 1272 VPVGERLLERHIDIDPRCKRCGSNE-SITHLLFHCQFAQRVWHLAPLATAPDFRGMIDLM 1330
Query: 125 EWWMSVS-LLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQKV 3
W ++S L P + NL ++ W +WK RN + F+ V
Sbjct: 1331 ADWPALSNLKALPPTGIASGNLVPWIFWNIWKARNRFVFEGV 1372
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 57.4 bits (137), Expect = 2e-06
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKN 138
+ LPV + RRG+ +D C CGE E+++HVLF C A+ VW L+ V +N
Sbjct: 1065 LSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQN 1124
Query: 137 ISLKEWWMSVSLLPWNPAFVDRINLS-TYLLWWLWKTRNVWQFQ 9
S+ + L ++I S ++LW LWK R+ F+
Sbjct: 1125 SSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFE 1168
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 57.0 bits (136), Expect = 3e-06
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLA--PVNWEGIIHKNIS 132
LP L RG+++D C C E+++H LF C A M W+L+ P+ I+ NI
Sbjct: 688 LPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNI- 746
Query: 131 LKEWWMSVSLLPWNPAFVDRINLSTY-LLWWLWKTRN 24
++ ++ LL N D L + LLW +WK RN
Sbjct: 747 -EDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARN 782
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 57.0 bits (136), Expect = 3e-06
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = -2
Query: 320 CIHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLA---------- 171
C+ L + L+ R I D C C EET+ H++FNC + VW+ A
Sbjct: 53 CVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGP 112
Query: 170 PVNWEGIIHKNISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQK 6
P ++E +++ I L + + SL DR L +++W LWK+RNV+ FQ+
Sbjct: 113 PSSFEDNLNRLIQLSKTQTTNSL--------DRF-LPFWIMWRLWKSRNVFLFQQ 158
>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 491
Score = 56.6 bits (135), Expect = 3e-06
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVW-KLAPVNWEGIIHK 141
+HD L + + RR I +D C CG ET HVL +C AK +W +L P W +
Sbjct: 296 LHDRLKTKAEIGRRHIHIDWTCDHCGVASETTLHVLRDCFMAKRLWNQLLPSEWRQVFFS 355
Query: 140 NISLKEWWMSVSL---------LPWNPAFVDRINLSTYLLWWLWKTRNVWQFQKV 3
+ L W++++L L W+ F +W LW RN +QF KV
Sbjct: 356 SNLLD--WLTLNLRSNQCMENGLEWSCMF-------GVAIWRLWFWRNQYQFNKV 401
>ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, partial [Capsella rubella]
gi|482554155|gb|EOA18348.1| hypothetical protein
CARUB_v10006875mg, partial [Capsella rubella]
Length = 438
Score = 56.6 bits (135), Expect = 3e-06
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = -2
Query: 299 VLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNISLKEW 120
V NL+RR I ++ C WC E+ +H+ F C R +W++ V + NISL++
Sbjct: 131 VADNLRRRNININPYCSWCCSDFESSEHIFFTCPRVHPIWRMVGVPLTLLGDPNISLEDK 190
Query: 119 WMSVSLLPWNPAFVDRINLSTYL-LWWLWKTRNVWQFQK 6
+ L + + S +L LW LWKTRN F +
Sbjct: 191 LRYLFRLHNDSSLPIFKRTSPFLVLWRLWKTRNNLVFNR 229
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 56.6 bits (135), Expect = 3e-06
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = -2
Query: 314 HDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVN-WEGIIHKN 138
H+ LP NLKRR + D C CGE E ++H+LF C +K +W+ A + G +
Sbjct: 519 HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMS 578
Query: 137 ISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
S + S+ L N + ++L ++ W +WK RN
Sbjct: 579 NSFNQNLESIQKL--NQSARKDVSLFPFIGWRIWKMRN 614
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 56.6 bits (135), Expect = 3e-06
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPV--NWEGIIHKNIS 132
LPV L RR I+ +V C CG+ E +L H++ C AK VW+LAPV N H +++
Sbjct: 995 LPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVWELAPVLFNPSEATHSSVA 1053
Query: 131 LKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
L + ++ P + L +LLW LWK RN
Sbjct: 1054 LL-LVDAKRMVALPPTGLGSAPLYPWLLWHLWKARN 1088
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 56.2 bits (134), Expect = 4e-06
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = -2
Query: 305 LPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNWEGIIHKNISL- 129
LPV + RRG+ +D C CG+ E+ +HVLF C A+ VW L+ V +N S+
Sbjct: 843 LPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIF 902
Query: 128 --KEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRN 24
++ + + P V R ++LW LWK RN
Sbjct: 903 ANIQFLFELKKMILVPDLVKR--SWPWVLWRLWKNRN 937
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = -2
Query: 317 IHDVLPVLSNLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLAPVNW-EGIIHK 141
I LP S L RG+ +D +C C EET++HVLF C A +W L+ W G
Sbjct: 1379 ISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFS 1438
Query: 140 NISLKEWWMSVSLLPWNPAFVDRINLSTYLLWWLWKTRNVWQFQK 6
+ + ++ N ++ +L+W LWK RN F K
Sbjct: 1439 QDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNK 1483
>emb|CAN79789.1| hypothetical protein VITISV_039779 [Vitis vinifera]
Length = 1566
Score = 55.5 bits (132), Expect = 7e-06
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Frame = -2
Query: 290 NLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLA----PVNWEGIIHKNISLKE 123
+LKRRG + C C + EET++H+L +C +AK++W L VNW + +
Sbjct: 1430 HLKRRGWSLANRCFLCCDDEETINHILIHCPKAKVLWNLMFTMFRVNW---------VLQ 1480
Query: 122 WWMSVSLLPWNPAFVDRINLSTY------LLWWLWKTRN 24
+ LL W+ +FVD+ + L W +WK RN
Sbjct: 1481 XTVKDILLGWSDSFVDKKRGKIWRAAPLCLFWTMWKARN 1519
>emb|CAN75374.1| hypothetical protein VITISV_029152 [Vitis vinifera]
Length = 655
Score = 55.5 bits (132), Expect = 7e-06
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Frame = -2
Query: 290 NLKRRGIKVDVNCGWCGEGEETLDHVLFNCERAKMVWKLA----PVNWEGIIHKNISLKE 123
+LKRRG + C C + EET++H+L +C +AK++W L VNW +++K+
Sbjct: 519 HLKRRGWSLANKCFLCCDDEETINHILIHCPKAKVLWNLMFTMFRVNWV----LQLTVKD 574
Query: 122 WWMSVSLLPWNPAFVDRINLSTY------LLWWLWKTRN 24
LL W+ +FVD+ + L W +WK RN
Sbjct: 575 -----ILLGWSDSFVDKKRGKIWRAAPLCLFWTMWKARN 608