BLASTX nr result
ID: Rehmannia24_contig00029105
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00029105
(385 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006828672.1| hypothetical protein AMTR_s04653p00000520, p... 67 2e-09
gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subc... 67 3e-09
gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Jap... 67 3e-09
gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Jap... 67 3e-09
emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group] 67 3e-09
gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Jap... 67 3e-09
gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica... 66 4e-09
ref|NP_001050456.1| Os03g0439900 [Oryza sativa Japonica Group] g... 66 4e-09
gb|ABF96839.1| retrotransposon protein, putative, Ty3-gypsy subc... 66 4e-09
gb|AAK50400.1|AC021891_1 Putative retroelement [Oryza sativa Jap... 66 4e-09
gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Jap... 66 6e-09
emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group] g... 66 6e-09
emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group] 66 6e-09
emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group] 66 6e-09
gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subc... 66 6e-09
gb|ABF97503.1| retrotransposon protein, putative, unclassified [... 66 6e-09
gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Ja... 66 6e-09
ref|NP_001172941.1| Os02g0455725 [Oryza sativa Japonica Group] g... 65 1e-08
gb|AAU10841.1| putative polyprotein [Oryza sativa Japonica Group] 65 1e-08
gb|AAO73254.1| putative GAG-POL precursor [Oryza sativa Japonica... 64 2e-08
>ref|XP_006828672.1| hypothetical protein AMTR_s04653p00000520, partial [Amborella
trichopoda] gi|548833479|gb|ERM96088.1| hypothetical
protein AMTR_s04653p00000520, partial [Amborella
trichopoda]
Length = 563
Score = 67.0 bits (162), Expect = 2e-09
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Frame = -3
Query: 335 EDRRSNRK--RKADVRQATNAERQVRVAEIKEGQPTGHFVFSDADADQVVHPHSDPLVIT 162
+ R+S + R+A + TN E + VF ++DA V HPHSD LVI
Sbjct: 219 DSRKSQERYAREAKEKPLTNVNNLGERPEKLFKRECEDIVFMESDARWVHHPHSDALVIV 278
Query: 161 APILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
A I G VHRIL+D+GS +++ +AF+++ + + +RP SI GF G
Sbjct: 279 ANIGGDNVHRILVDNGSSVNLLNFQAFKQMGLQEKDLRPMTSSIYGFTG 327
>gb|ABA99442.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1767
Score = 66.6 bits (161), Expect = 3e-09
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHPHSDPLVITAPI 153
S R+RK +R + + EG P F DA+ V+ PH DPLVI+A I
Sbjct: 654 SKRQRKMQIRMVHS------ITSAGEGAPQYVNQLISFGPEDAEGVLFPHQDPLVISAEI 707
Query: 152 LGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 708 AGFEVRRILVDGGSSADVIFAEAYAKMGLPTQTLAPAPTSLRGFGG 753
>gb|AAM01123.1|AC108884_5 Putative retroelement [Oryza sativa Japonica Group]
gi|31431922|gb|AAP53628.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1292
Score = 66.6 bits (161), Expect = 3e-09
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Frame = -3
Query: 380 ILMMSSVSRINTNTMEDRRSNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDA 210
++ + V + + SN ++ A ++ + EG P F
Sbjct: 291 VMAVEEVQALRKEFDAQQASNHQQPAHKKKKMQTRMVHSITSAGEGAPQYLNQLISFGPE 350
Query: 209 DADQVVHPHSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSI 30
DA+ V+ PH DPLVI+A I G V RIL+D GS + VI+ A+ ++ + + P S+
Sbjct: 351 DAEGVIFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPVSL 410
Query: 29 LGFGG 15
GFGG
Sbjct: 411 RGFGG 415
>gb|AAL58173.1|AC093181_19 putative polyprotein [Oryza sativa Japonica Group]
Length = 1931
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/100 (35%), Positives = 55/100 (55%)
Frame = -3
Query: 314 KRKADVRQATNAERQVRVAEIKEGQPTGHFVFSDADADQVVHPHSDPLVITAPILGIPVH 135
+++ D +QA+N ++ R + + F DA+ V+ PH DPLVI+A I G V
Sbjct: 748 RKEFDAQQASNHQQPARKKYLNQ-----LISFGPEDAEGVMFPHQDPLVISAEIAGFEVR 802
Query: 134 RILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
RIL+D GS + VI+ A+ + + + P S+ GFGG
Sbjct: 803 RILVDGGSSADVIFAEAYATMGLPTQSLTPAPTSLHGFGG 842
>emb|CAE02458.1| OSJNBa0042D13.11 [Oryza sativa Japonica Group]
Length = 992
Score = 66.6 bits (161), Expect = 3e-09
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQPTGH---FVFSDADADQVVHPHSDPLVITAPI 153
S R++K +R + + EG P F DA++V+ PH DPLVI+A I
Sbjct: 106 SKRQKKMQIRMVHS------ITSAGEGVPQYQNQLISFGPEDAEEVMFPHQDPLVISAEI 159
Query: 152 LGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 160 AGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGG 205
>gb|AAK51571.1|AC022352_7 Putative retroelement [Oryza sativa Japonica Group]
Length = 1497
Score = 66.6 bits (161), Expect = 3e-09
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = -3
Query: 356 RINTNTMEDRRSNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHP 186
R + T + R +++K +R N + EG P F DA+ V+ P
Sbjct: 385 RSSHTTEQCRNIRQRKKMQIRMVHN------ITSAGEGAPQYVNQLISFGPEDAEGVLFP 438
Query: 185 HSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
H DPLVI+A I G V RIL+D GS + +I+ A+ ++ + + P S+ GFGG
Sbjct: 439 HQDPLVISAEIAGFEVRRILVDEGSSADIIFAEAYAKMGLPTQALTPAPASLRGFGG 495
>gb|AAO23086.1| putative gag-pol precursor [Oryza sativa Japonica Group]
Length = 971
Score = 66.2 bits (160), Expect = 4e-09
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQPTGHFV-FSDADADQVVHPHSDPLVITAPILG 147
S R++K +R A + A + Q + F DA+ V+ PH DPLVI+A I G
Sbjct: 686 SKRQKKMHIR----AVHSITSAGKRAPQYVNQLISFGPEDAEGVMFPHQDPLVISAEIAG 741
Query: 146 IPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
V RIL+D GS + VI+V A+ ++ + + P SI GFGG
Sbjct: 742 FEVWRILVDGGSSADVIFVEAYAKMGLPTQALTPAPASIRGFGG 785
>ref|NP_001050456.1| Os03g0439900 [Oryza sativa Japonica Group]
gi|113548927|dbj|BAF12370.1| Os03g0439900, partial
[Oryza sativa Japonica Group]
Length = 420
Score = 66.2 bits (160), Expect = 4e-09
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQPTGHFV-FSDADADQVVHPHSDPLVITAPILG 147
S R++K +R A + A + Q + F DA+ V+ PH DPLVI+A I G
Sbjct: 135 SKRQKKMHIR----AVHSITSAGKRAPQYVNQLISFGPEDAEGVMFPHQDPLVISAEIAG 190
Query: 146 IPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
V RIL+D GS + VI+V A+ ++ + + P SI GFGG
Sbjct: 191 FEVWRILVDGGSSADVIFVEAYAKMGLPTQALTPAPASIRGFGG 234
>gb|ABF96839.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
[Oryza sativa Japonica Group]
Length = 406
Score = 66.2 bits (160), Expect = 4e-09
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQPTGHFV-FSDADADQVVHPHSDPLVITAPILG 147
S R++K +R A + A + Q + F DA+ V+ PH DPLVI+A I G
Sbjct: 121 SKRQKKMHIR----AVHSITSAGKRAPQYVNQLISFGPEDAEGVMFPHQDPLVISAEIAG 176
Query: 146 IPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
V RIL+D GS + VI+V A+ ++ + + P SI GFGG
Sbjct: 177 FEVWRILVDGGSSADVIFVEAYAKMGLPTQALTPAPASIRGFGG 220
>gb|AAK50400.1|AC021891_1 Putative retroelement [Oryza sativa Japonica Group]
Length = 1291
Score = 66.2 bits (160), Expect = 4e-09
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Frame = -3
Query: 338 MEDRRSNRKRKADVRQATNAERQVR------VAEIKEGQP---TGHFVFSDADADQVVHP 186
++++ +++ DV Q + +++++ + EG P F DA+ V+ P
Sbjct: 366 VQEQTPPAEQRQDVHQLSKRQKKMQTRMVHSITSAGEGAPQYLNQLISFGPEDAEGVIFP 425
Query: 185 HSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
H DPLVI+A I G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 426 HQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPVSLRGFGG 482
>gb|AAL86511.1|AC099040_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1722
Score = 65.9 bits (159), Expect = 6e-09
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHPHSDPLVITAPI 153
S R++K +R + + EG P F DA+ V+ PH DPLVI+A I
Sbjct: 489 SKRQKKMQIRMVHS------ITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEI 542
Query: 152 LGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 543 AGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGG 588
>emb|CAD40452.2| OSJNBa0041M21.10 [Oryza sativa Japonica Group]
gi|38343994|emb|CAD40359.2| OSJNBa0093P23.5 [Oryza sativa
Japonica Group]
Length = 2074
Score = 65.9 bits (159), Expect = 6e-09
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Frame = -3
Query: 365 SVSRINTNTMEDRRSNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQV 195
+V T + + + R+RK +R + + EG P F DA+ V
Sbjct: 1407 AVQEQTTPAKQRQDTQRRRKMQIRMVHS------ITSAGEGAPQYVNQLISFGPEDAEGV 1460
Query: 194 VHPHSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
+ PH DPLVI+A I G V RIL+D GS + VIY A+ ++ + + P S+ GF G
Sbjct: 1461 LFPHQDPLVISAEIAGFEVRRILVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSG 1520
>emb|CAE01996.2| OSJNBb0033G08.12 [Oryza sativa Japonica Group]
Length = 1847
Score = 65.9 bits (159), Expect = 6e-09
Identities = 30/69 (43%), Positives = 43/69 (62%)
Frame = -3
Query: 221 FSDADADQVVHPHSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPC 42
F DA++V+ PH DPLVI+A I G V RIL+D GS + VI+ A+ ++ + + P
Sbjct: 768 FGPEDAEEVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKIGLPTQALTPA 827
Query: 41 NDSILGFGG 15
S+ GFGG
Sbjct: 828 PASLRGFGG 836
>emb|CAH66268.1| OSIGBa0136B09.4 [Oryza sativa Indica Group]
Length = 1348
Score = 65.9 bits (159), Expect = 6e-09
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Frame = -3
Query: 365 SVSRINTNTMEDRRSNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQV 195
+V T + + + R+RK +R + + EG P F DA+ V
Sbjct: 681 AVQEQTTPAKQRQDTQRRRKMQIRMVHS------ITSAGEGAPQYVNQLISFGPEDAEGV 734
Query: 194 VHPHSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
+ PH DPLVI+A I G V RIL+D GS + VIY A+ ++ + + P S+ GF G
Sbjct: 735 LFPHQDPLVISAEIAGFEVRRILVDGGSSADVIYAEAYAKMGLPTQALTPALTSLRGFSG 794
>gb|AAP52706.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1735
Score = 65.9 bits (159), Expect = 6e-09
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHPHSDPLVITAPI 153
S R++K +R + + EG P F DA+ V+ PH DPLVI+A I
Sbjct: 502 SKRQKKMQIRMVHS------ITSAGEGAPQYLNQLIYFGPEDAEGVMFPHQDPLVISAEI 555
Query: 152 LGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 556 AGFEVRRILVDGGSSADVIFAEAYAKMGLTSQALTPAPASLRGFGG 601
>gb|ABF97503.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1172
Score = 65.9 bits (159), Expect = 6e-09
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Frame = -3
Query: 308 KADVRQATNAERQVRVAE-----IKEGQPTGHFVFS-DADADQVVHPHSDPLVITAPILG 147
KA V A A++QV+VAE +++ QP DA+ V PH DPLVI+A I G
Sbjct: 325 KASVTTA-QAQQQVQVAEPPPLVVRQPQPAIQAQPPRQEDAEGVTFPHQDPLVISAEIAG 383
Query: 146 IPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 384 FEVRRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGG 427
>gb|AAT81681.1| putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1168
Score = 65.9 bits (159), Expect = 6e-09
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Frame = -3
Query: 308 KADVRQATNAERQVRVAE-----IKEGQPTGHFVFS-DADADQVVHPHSDPLVITAPILG 147
KA V A A++QV+VAE +++ QP DA+ V PH DPLVI+A I G
Sbjct: 321 KASVTTA-QAQQQVQVAEPPPLVVRQPQPAIQAQPPRQEDAEGVTFPHQDPLVISAEIAG 379
Query: 146 IPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 380 FEVRRILVDGGSSTDVIFAEAYAKMGLTTQALTPAPTSLRGFGG 423
>ref|NP_001172941.1| Os02g0455725 [Oryza sativa Japonica Group]
gi|255670866|dbj|BAH91670.1| Os02g0455725 [Oryza sativa
Japonica Group]
Length = 752
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = -3
Query: 323 SNRKRKADVRQATNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHPHSDPLVITAPI 153
S R++K +R + + EG P F DA+ V+ PH DPLVI+A I
Sbjct: 399 SKRQKKMQIRMVHS------ITSAGEGAPQYLNQLISFRPEDAEGVMFPHQDPLVISAEI 452
Query: 152 LGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
G V RIL+D GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 453 AGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPAPASLRGFGG 498
>gb|AAU10841.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1528
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Frame = -3
Query: 287 TNAERQVRVAEIKEGQP---TGHFVFSDADADQVVHPHSDPLVITAPILGIPVHRILIDS 117
+NAE VA +EG P F DA+ V+ PH DPLVI+A I G V RIL++
Sbjct: 464 SNAETFGNVAT-REGAPQYLNQQIFFGPEDAEGVMFPHQDPLVISAEIAGFEVRRILVNG 522
Query: 116 GSYSSVIYVRAFRRLNVDDSYIRPCNDSILGFGG 15
GS + VI+ A+ ++ + + P S+ GFGG
Sbjct: 523 GSSADVIFAEAYAKMGLTTQALTPALTSLRGFGG 556
>gb|AAO73254.1| putative GAG-POL precursor [Oryza sativa Japonica Group]
gi|108709218|gb|ABF97013.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 908
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = -3
Query: 221 FSDADADQVVHPHSDPLVITAPILGIPVHRILIDSGSYSSVIYVRAFRRLNVDDSYIRPC 42
F DA V+ PH DPLVI+A I G V RIL+D GS + VI+ A+ ++ + + P
Sbjct: 698 FGPEDAKGVMFPHQDPLVISAEIAGFEVRRILVDGGSSADVIFAEAYAKMGLPTQALTPA 757
Query: 41 NDSILGFGG 15
+S+ GFGG
Sbjct: 758 PESLHGFGG 766