BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00028423
         (416 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot...   248   5e-64
gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform v...   221   1e-55
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] gi|82...   192   3e-47
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]             191   1e-46
gb|AHA10984.1| 1a protein [Tomato aspermy virus]                      159   5e-37
emb|CAC86463.1| 1a protein [Tomato aspermy virus]                     159   5e-37
ref|NP_620760.1| 1a protein [Tomato aspermy virus] gi|137257|sp|...   157   1e-36
ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus] gi...   157   2e-36
gb|ADR82073.1| 1a protein [Tomato aspermy virus]                      155   4e-36
gb|AAR89468.1| 1a protein [Peanut stunt virus]                        154   9e-36
emb|CAP19049.1| 1a protein [Peanut stunt virus]                       153   2e-35
sp|P28726.1|ORF1A_PSVJ RecName: Full=Replication protein 1a; Inc...   152   3e-35
gb|AFG28425.1| 1a protein [Peanut stunt virus]                        152   3e-35
gb|ADN83830.1| 1a protein [Peanut stunt virus]                        152   3e-35
dbj|BAF80085.1| 1a protein [Peanut stunt virus]                       152   3e-35
gb|ACF34993.1| 1a protein [Peanut stunt virus]                        150   1e-34
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|5131...   149   3e-34
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] g...   147   1e-33
gb|AAC36495.1| viral replication protein 1a [Peanut stunt virus]      147   2e-33
emb|CAA71832.1| 1a protein [Cucumber mosaic virus]                    147   2e-33

>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
           gi|398650492|dbj|BAM34543.1| replication protein 1a
           [Amazon lily mild mottle virus]
          Length = 945

 Score =  248 bits (634), Expect = 5e-64
 Identities = 115/138 (83%), Positives = 124/138 (89%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC  +AE+C VQCPYAI IHGGYDMGFQTLC+AMHKHGCVMLRGTMMFD+EMLLY+ G
Sbjct: 159 PNFCDQRAEECSVQCPYAICIHGGYDMGFQTLCAAMHKHGCVMLRGTMMFDAEMLLYKDG 218

Query: 182 FISDLNCVWSKRNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEF 361
           FI DLNCVWS R   +AFDFRDESTLSY HSFKNVKSFLTDQ+HVIGTTAYILERC I+ 
Sbjct: 219 FIPDLNCVWSIRGDKIAFDFRDESTLSYCHSFKNVKSFLTDQAHVIGTTAYILERCVIDM 278

Query: 362 GIMSYKITAVSGDIPRIK 415
           GIMSYK+TAVSGDIPR K
Sbjct: 279 GIMSYKVTAVSGDIPRTK 296


>gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
          Length = 943

 Score =  221 bits (562), Expect = 1e-55
 Identities = 99/135 (73%), Positives = 119/135 (88%)
 Frame = +2

Query: 5   NFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESGF 184
           +FC L+AE+C+VQCPYAI IHG YDMGF+T+C AM++HG V+LRGTMMFDSEMLLY+ GF
Sbjct: 160 DFCTLRAEECKVQCPYAICIHGAYDMGFETMCKAMNRHGTVLLRGTMMFDSEMLLYKEGF 219

Query: 185 ISDLNCVWSKRNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEFG 364
           ++DLNCVWS     ++FDFRDESTLSYTHSFKNVKSFLTDQ+ V    AY+LERC+IE+G
Sbjct: 220 MADLNCVWSISGDRISFDFRDESTLSYTHSFKNVKSFLTDQAFVYNNVAYLLERCSIEYG 279

Query: 365 IMSYKITAVSGDIPR 409
           IMS+KITAVSGD+PR
Sbjct: 280 IMSFKITAVSGDVPR 294


>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
           gi|82004832|sp|Q9DUT3.1|1A_PZSVT RecName:
           Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase gi|10185102|emb|CAC08526.1|
           unnamed protein product [Pelargonium zonate spot virus]
          Length = 962

 Score =  192 bits (489), Expect = 3e-47
 Identities = 91/150 (60%), Positives = 109/150 (72%), Gaps = 12/150 (8%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC LKAEDCEVQ PYAISIHG YDMGF+ LC AMH HG +MLRGTMMFD+ ML++  G
Sbjct: 160 PDFCLLKAEDCEVQSPYAISIHGAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFNEG 219

Query: 182 FISDLNCVWSKRNG------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGT 325
            + DLNC W+K  G            +V FDF DESTLSY+HS+KN+KSFLT+  + IG 
Sbjct: 220 VMEDLNCRWTKEKGDPYGLRGAPCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIGN 279

Query: 326 TAYILERCTIEFGIMSYKITAVSGDIPRIK 415
             Y+LERC I +GIMS+KI AVSG IP  +
Sbjct: 280 VQYVLERCVISYGIMSFKIFAVSGKIPHTR 309


>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
          Length = 962

 Score =  191 bits (484), Expect = 1e-46
 Identities = 90/150 (60%), Positives = 110/150 (73%), Gaps = 12/150 (8%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC LKAEDCEV+ PYAISIHG YDMGF+ LC AMH HG +MLRGTMMFD+ ML+++ G
Sbjct: 161 PDFCLLKAEDCEVRSPYAISIHGAYDMGFEGLCKAMHSHGTIMLRGTMMFDANMLVFDEG 220

Query: 182 FISDLNCVWSKRNG------------IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGT 325
            + DLNC W+K  G            +V FDF DESTLSY+HS+KN+KSFLT+  + I  
Sbjct: 221 VMEDLNCRWTKEKGDPFGLRGAPCEDMVHFDFIDESTLSYSHSWKNIKSFLTEGGYQIEN 280

Query: 326 TAYILERCTIEFGIMSYKITAVSGDIPRIK 415
             Y+LERC I +GIMS+KI AVSG IPR +
Sbjct: 281 VQYVLERCVISYGIMSFKIFAVSGKIPRTR 310


>gb|AHA10984.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  159 bits (401), Expect = 5e-37
 Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 27/162 (16%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC L AEDC+VQ  +AISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G
Sbjct: 164 PDFCTLPAEDCKVQAHFAISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEG 223

Query: 182 FISDLNCVWSK---------------------------RNGIVAFDFRDESTLSYTHSFK 280
           +++DL C W K                            + ++AFDF DESTLSY H ++
Sbjct: 224 YLADLKCKWKKIKPRTYESEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWE 283

Query: 281 NVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           NVKSFLTDQ++      Y LERC I+ GIM+YKI AV G  P
Sbjct: 284 NVKSFLTDQTYSYKGMTYGLERCLIQHGIMTYKIIAVPGTCP 325


>emb|CAC86463.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  159 bits (401), Expect = 5e-37
 Identities = 81/162 (50%), Positives = 98/162 (60%), Gaps = 27/162 (16%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC L AEDC+VQ  +AISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G
Sbjct: 164 PDFCTLPAEDCKVQAHFAISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEG 223

Query: 182 FISDLNCVWSK---------------------------RNGIVAFDFRDESTLSYTHSFK 280
           +++DL C W K                            + ++AFDF DESTLSY H ++
Sbjct: 224 YLADLKCKWKKIKPRTYESEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWE 283

Query: 281 NVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           NVKSFLTDQ++      Y LERC I+ GIM+YKI AV G  P
Sbjct: 284 NVKSFLTDQTYSYKGMTYGLERCLIQHGIMTYKIIAVPGTCP 325


>ref|NP_620760.1| 1a protein [Tomato aspermy virus] gi|137257|sp|P28931.1|ORF1A_TAV
           RecName: Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase gi|222673|dbj|BAA00936.1| ORF
           [Tomato aspermy virus]
          Length = 993

 Score =  157 bits (397), Expect = 1e-36
 Identities = 80/162 (49%), Positives = 97/162 (59%), Gaps = 27/162 (16%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC L AEDC+VQ  + ISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G
Sbjct: 164 PDFCTLPAEDCKVQAHFVISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEG 223

Query: 182 FISDLNCVWSK---------------------------RNGIVAFDFRDESTLSYTHSFK 280
           +++DL C W K                            + ++AFDF DESTLSY H ++
Sbjct: 224 YLADLKCKWKKIKPRTYESEDQTPLLSRISDNLTTTIKDHTLIAFDFVDESTLSYVHKWE 283

Query: 281 NVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           NVKSFLTDQ++      Y LERC I+ GIM+YKI AV G  P
Sbjct: 284 NVKSFLTDQTYSYKGMTYGLERCLIQHGIMTYKIIAVPGTCP 325


>ref|YP_002640500.1| 1a protein [Gayfeather mild mottle virus]
           gi|224492618|emb|CAT02556.1| 1a protein [Gayfeather mild
           mottle virus]
          Length = 988

 Score =  157 bits (396), Expect = 2e-36
 Identities = 81/162 (50%), Positives = 95/162 (58%), Gaps = 27/162 (16%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   A DC+V+  +AISIHGGYDMGFQ LC AMH HG  +L+GTMMFD  ML    G
Sbjct: 164 PNFCTSPAADCDVKAHFAISIHGGYDMGFQGLCQAMHAHGTTILKGTMMFDGAMLFDTEG 223

Query: 182 FISDLNCVWSK---------------------------RNGIVAFDFRDESTLSYTHSFK 280
           FI DL C W K                            N ++AFDF DESTLSY H ++
Sbjct: 224 FIPDLKCKWKKIKPFTFEKEDQTSKVGKLNSVVFSAARVNTLIAFDFVDESTLSYVHEWE 283

Query: 281 NVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           NVKSFLTDQ++      Y +ERC I+ GIM+YKI A  G  P
Sbjct: 284 NVKSFLTDQTYHYKGMTYGIERCLIQNGIMTYKIIATPGSCP 325


>gb|ADR82073.1| 1a protein [Tomato aspermy virus]
          Length = 993

 Score =  155 bits (393), Expect = 4e-36
 Identities = 80/162 (49%), Positives = 97/162 (59%), Gaps = 27/162 (16%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC L AEDC+VQ  +AISIHGGYDMGF+ LC AMH HG   L+GTMMFD  ML    G
Sbjct: 164 PDFCTLPAEDCKVQAHFAISIHGGYDMGFKGLCRAMHAHGTTFLKGTMMFDGAMLFDTEG 223

Query: 182 FISDLNCVWSK---------------------------RNGIVAFDFRDESTLSYTHSFK 280
           +++DL C W K                            + ++A DF DESTLSY H ++
Sbjct: 224 YLADLKCKWKKIKPRTYESEDQTPLLSRISDNLTTTIKDHTLIASDFVDESTLSYVHKWE 283

Query: 281 NVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           NVKSFLTDQ++      Y LERC I+ GIM+YKI AV G  P
Sbjct: 284 NVKSFLTDQTYSYKGMTYGLERCLIQHGIMTYKIIAVPGTCP 325


>gb|AAR89468.1| 1a protein [Peanut stunt virus]
          Length = 1004

 Score =  154 bits (390), Expect = 9e-36
 Identities = 78/158 (49%), Positives = 95/158 (60%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNTAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H ++N+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASAFSSKLNLSIGGRTLIAFDFENESTMSYVHEWRNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ++  G   Y +ERC I  GIM+YKI  V G  P
Sbjct: 284 FLTDQTYSYGGYTYGIERCVIYAGIMTYKIIGVPGVCP 321


>emb|CAP19049.1| 1a protein [Peanut stunt virus]
          Length = 997

 Score =  153 bits (387), Expect = 2e-35
 Identities = 78/158 (49%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG + L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTIFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASSLSSKLNLVVSGKTLIAFDFENESTMSYVHEWKNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GIM+YKI  V G  P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGIMTYKIIGVPGVCP 321


>sp|P28726.1|ORF1A_PSVJ RecName: Full=Replication protein 1a; Includes: RecName:
           Full=ATP-dependent helicase; Includes: RecName:
           Full=Methyltransferase gi|222418|dbj|BAA01900.1| 1a
           protein [Peanut stunt virus]
          Length = 1005

 Score =  152 bits (385), Expect = 3e-35
 Identities = 77/158 (48%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GI++YKI  V G+ P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGILTYKIIGVPGECP 321


>gb|AFG28425.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  152 bits (385), Expect = 3e-35
 Identities = 77/158 (48%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GI++YKI  V G+ P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGILTYKIIGVPGECP 321


>gb|ADN83830.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  152 bits (385), Expect = 3e-35
 Identities = 77/158 (48%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GI++YKI  V G+ P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGILTYKIIGVPGECP 321


>dbj|BAF80085.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  152 bits (385), Expect = 3e-35
 Identities = 77/158 (48%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASTFTSKLNLAVSGKTLIAFDFENESTMSYIHEWKNIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GI++YKI  V G+ P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGILTYKIIGVPGECP 321


>gb|ACF34993.1| 1a protein [Peanut stunt virus]
          Length = 1005

 Score =  150 bits (380), Expect = 1e-34
 Identities = 76/158 (48%), Positives = 94/158 (59%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+VQ  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 164 PNFCTNPAEKCDVQAHYAISIHGGYDMGFKGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 223

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H ++N+KS
Sbjct: 224 FIPELKCHWRKIKNAFSEKENASAFTSKLNLAISGKTLIAFDFENESTMSYIHEWENIKS 283

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLTDQ+       Y +ERC I  GI++YKI  V G+ P
Sbjct: 284 FLTDQTFSYNGYTYGIERCVIYAGILTYKIIGVPGECP 321


>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus]
           gi|513125395|dbj|BAD98316.2| 1a protein [Cassia yellow
           blotch virus]
          Length = 955

 Score =  149 bits (377), Expect = 3e-34
 Identities = 72/136 (52%), Positives = 90/136 (66%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC  KA DC VQ  +AI IHGGYDMGF+ LC +M  HG  +L+GT+MFD  ML  ESG
Sbjct: 157 PDFCLNKARDCNVQADWAICIHGGYDMGFKDLCHSMRSHGVRILKGTIMFDGAMLFDESG 216

Query: 182 FISDLNCVWSKRNGIVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERCTIEF 361
           F+  L C W K  G V FDF +ESTLSY HS+  + SF T+  + IG+T Y+LER  I+ 
Sbjct: 217 FLPLLKCRWKKEKGFVKFDFENESTLSYIHSWDKLGSFFTESVYRIGSTTYLLERELIKC 276

Query: 362 GIMSYKITAVSGDIPR 409
            IM+YKI A     P+
Sbjct: 277 NIMTYKIIATDLPCPK 292


>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
           gi|259651322|dbj|BAI40161.1| 1a protein [Melandrium
           yellow fleck virus]
          Length = 948

 Score =  147 bits (371), Expect = 1e-33
 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 4/139 (2%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC  KAEDC+VQ  +AI IHGGYDMGF+ LC AM+ HG  +LRGT+MFD  ML    G
Sbjct: 153 PDFCLNKAEDCKVQADWAICIHGGYDMGFKNLCKAMNSHGVRILRGTIMFDGAMLFDRQG 212

Query: 182 FISDLNCVWSKRNG----IVAFDFRDESTLSYTHSFKNVKSFLTDQSHVIGTTAYILERC 349
            I  LNC W +       ++ FDF +ESTLSY H+++N+ SFLT+    +G+T Y+LER 
Sbjct: 213 TIPLLNCRWMREGSGSSEVIKFDFVNESTLSYVHNWRNLGSFLTESVCCVGSTTYLLERE 272

Query: 350 TIEFGIMSYKITAVSGDIP 406
            +  GIMSYKI A +   P
Sbjct: 273 VLRCGIMSYKIIATNVKCP 291


>gb|AAC36495.1| viral replication protein 1a [Peanut stunt virus]
          Length = 1002

 Score =  147 bits (370), Expect = 2e-33
 Identities = 75/158 (47%), Positives = 92/158 (58%), Gaps = 23/158 (14%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           PNFC   AE C+++  YAISIHGGYDMGF+ LC AM+ HG   L+GTMMFD  ML  +SG
Sbjct: 162 PNFCTNPAEKCDIKAHYAISIHGGYDMGFEGLCRAMNAHGTTFLKGTMMFDGAMLFDDSG 221

Query: 182 FISDLNCVWSKRNG-----------------------IVAFDFRDESTLSYTHSFKNVKS 292
           FI +L C W K                          ++AFDF +EST+SY H +KN+KS
Sbjct: 222 FIPELKCHWRKIKNSFSEKENASSLSSKLNLAVSGKRLIAFDFENESTMSYVHEWKNIKS 281

Query: 293 FLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           FLT Q+       Y +ERC I  GIM+YKI  V G  P
Sbjct: 282 FLTCQTFSYNGYTYGIERCVIYAGIMTYKIIGVPGVCP 319


>emb|CAA71832.1| 1a protein [Cucumber mosaic virus]
          Length = 991

 Score =  147 bits (370), Expect = 2e-33
 Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 28/163 (17%)
 Frame = +2

Query: 2   PNFCCLKAEDCEVQCPYAISIHGGYDMGFQTLCSAMHKHGCVMLRGTMMFDSEMLLYESG 181
           P+FC   A +C+VQ  +AISIHGGYDMGF+ LC AM+ HG  +L+GTMMFD  M+  + G
Sbjct: 163 PDFCTKSAAECKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQG 222

Query: 182 FISDLNCVWSK--------------------------RNG--IVAFDFRDESTLSYTHSF 277
           FI +L C W K                          RNG  ++AFDF +EST+SY H +
Sbjct: 223 FIPELKCQWRKIKSAFSEEEVATCLAAKINSSVFSRVRNGKTLIAFDFVEESTMSYVHDW 282

Query: 278 KNVKSFLTDQSHVIGTTAYILERCTIEFGIMSYKITAVSGDIP 406
           +N+KSF+TDQ++      Y +ERC I  G+M+YKI  V G  P
Sbjct: 283 ENIKSFMTDQTYSFNGMTYGIERCVIYAGVMTYKIVGVPGMCP 325