BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00025842
         (729 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469883.1| PREDICTED: RNA polymerase II subunit 5-media...    61   4e-07
ref|XP_006447280.1| hypothetical protein CICLE_v10015278mg [Citr...    61   4e-07
ref|XP_004300695.1| PREDICTED: uncharacterized protein LOC101303...    57   5e-06

>ref|XP_006469883.1| PREDICTED: RNA polymerase II subunit 5-mediating protein homolog
           isoform X3 [Citrus sinensis]
           gi|568831243|ref|XP_006469884.1| PREDICTED: RNA
           polymerase II subunit 5-mediating protein homolog
           isoform X4 [Citrus sinensis]
          Length = 401

 Score = 60.8 bits (146), Expect = 4e-07
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
 Frame = +3

Query: 153 DEDEQTQNEANSTISQNSMNQEVRSSPVEASDVPGVSKDGSSHGDHIALN----NSTMDK 320
           +EDEQ    ++   +Q S++  +R S      V    +D       +A N     ++ +K
Sbjct: 265 NEDEQANTVSDQFSNQISLDHNLRHSECTGLTVQAALEDAKPRTKSLATNVNVEANSAEK 324

Query: 321 ALELPQDAKKVQTPLSSSNT-------------AFTGSIVEHAHNIGMQLPEQ------K 443
           AL LP++      PLS                 AFT SI+EH +N+     EQ       
Sbjct: 325 ALVLPKEDNVATAPLSIQEISAQASKPEFDRYKAFTESIIEHNYNLQTDQQEQIRNTSKP 384

Query: 444 SGARSSKPVSRFKMQRK 494
           SG++SSKPVSRFKMQRK
Sbjct: 385 SGSQSSKPVSRFKMQRK 401


>ref|XP_006447280.1| hypothetical protein CICLE_v10015278mg [Citrus clementina]
           gi|568831237|ref|XP_006469881.1| PREDICTED: RNA
           polymerase II subunit 5-mediating protein homolog
           isoform X1 [Citrus sinensis]
           gi|568831239|ref|XP_006469882.1| PREDICTED: RNA
           polymerase II subunit 5-mediating protein homolog
           isoform X2 [Citrus sinensis] gi|557549891|gb|ESR60520.1|
           hypothetical protein CICLE_v10015278mg [Citrus
           clementina]
          Length = 438

 Score = 60.8 bits (146), Expect = 4e-07
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
 Frame = +3

Query: 153 DEDEQTQNEANSTISQNSMNQEVRSSPVEASDVPGVSKDGSSHGDHIALN----NSTMDK 320
           +EDEQ    ++   +Q S++  +R S      V    +D       +A N     ++ +K
Sbjct: 302 NEDEQANTVSDQFSNQISLDHNLRHSECTGLTVQAALEDAKPRTKSLATNVNVEANSAEK 361

Query: 321 ALELPQDAKKVQTPLSSSNT-------------AFTGSIVEHAHNIGMQLPEQ------K 443
           AL LP++      PLS                 AFT SI+EH +N+     EQ       
Sbjct: 362 ALVLPKEDNVATAPLSIQEISAQASKPEFDRYKAFTESIIEHNYNLQTDQQEQIRNTSKP 421

Query: 444 SGARSSKPVSRFKMQRK 494
           SG++SSKPVSRFKMQRK
Sbjct: 422 SGSQSSKPVSRFKMQRK 438


>ref|XP_004300695.1| PREDICTED: uncharacterized protein LOC101303426 [Fragaria vesca
           subsp. vesca]
          Length = 369

 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 56/176 (31%), Positives = 74/176 (42%), Gaps = 62/176 (35%)
 Frame = +3

Query: 153 DEDEQTQNEANSTISQNSMNQEV-------------------------RSSPVEASD--- 248
           DE E+ + EA S +SQ+  N+EV                         R SP +  D   
Sbjct: 194 DELEKEEREAESQMSQSDENEEVQLGLHQLSDQKSLHGNLKTSGQSQSRKSPQQTKDGIA 253

Query: 249 --------------VPGVSKDGSSHGDHIALN-NSTMDKALELPQ-------DAKKVQTP 362
                         +  +S D  SHG+ +A N  S  +K    P         + + Q P
Sbjct: 254 SNKDSFTDEPSCSGLETISADKLSHGNILARNVKSVAEKDFVSPVVENFQTVPSSRSQVP 313

Query: 363 LSSSNT------AFTGSIVEHAHNIGMQLPE------QKSGARSSKPVSRFKMQRK 494
           L SS        AFTGSIVEHA N+ ++  E      Q S ++ SKPVSRFKMQRK
Sbjct: 314 LESSKPKFEREKAFTGSIVEHADNLQIKSRERTTATSQSSASQVSKPVSRFKMQRK 369