BLASTX nr result
ID: Rehmannia24_contig00025399
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00025399
(867 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 91 2e-34
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 89 6e-33
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 68 7e-22
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 69 1e-21
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 68 1e-20
dbj|BAA22288.1| polyprotein [Oryza australiensis] 69 1e-20
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 70 2e-19
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 63 4e-19
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 66 2e-18
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap... 66 2e-18
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 63 2e-18
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 63 2e-18
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 70 2e-18
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 70 2e-18
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 67 2e-17
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 68 5e-17
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 59 2e-16
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 64 6e-16
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 64 6e-16
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 68 9e-16
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 90.5 bits (223), Expect(4) = 2e-34
Identities = 47/85 (55%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A+YILGI M ++ KN+LL LSQA+YIDK+ + + M +SKKG L + + V LSKE+CPK
Sbjct: 372 GEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPK 431
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
PQ+E+ MRR+PYAS S+ Y +L
Sbjct: 432 TPQDEEKMRRVPYASAVGSLMYAML 456
Score = 55.1 bits (131), Expect(4) = 2e-34
Identities = 26/55 (47%), Positives = 32/55 (58%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDL 209
F+Q++ EPCVYKQI K N+VE+L+ VK W A QFQMKDL
Sbjct: 317 FEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKVKNWLASQFQMKDL 371
Score = 46.2 bits (108), Expect(4) = 2e-34
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR DI +A+G+ S++ SNP + H + VK++LKY+
Sbjct: 453 YAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYL 491
Score = 22.3 bits (46), Expect(4) = 2e-34
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 1 RSWNHKFDEMIKSW 42
RSWN F+E IKS+
Sbjct: 302 RSWNIIFNEAIKSY 315
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 88.6 bits (218), Expect(4) = 6e-33
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI +V+N KNK L +SQASYIDK+ Y+M +SKKG L + + LSKE+CPK
Sbjct: 1032 GEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPK 1091
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
PQE ++MR IPY+S S+ Y +L
Sbjct: 1092 TPQEVEDMRNIPYSSAVGSLMYAML 1116
Score = 50.8 bits (120), Expect(4) = 6e-33
Identities = 26/55 (47%), Positives = 31/55 (56%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDL 209
F+Q+VDEPCVYK+I +S N+VE L VK W QFQMKDL
Sbjct: 977 FEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDL 1031
Score = 45.4 bits (106), Expect(4) = 6e-33
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR DI Y++GI S++ SNP H VKN+LKY+
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYL 1151
Score = 23.9 bits (50), Expect(4) = 6e-33
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 1 RSWNHKFDEMIKSW 42
RSWN +FD IKS+
Sbjct: 962 RSWNIRFDTAIKSY 975
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 68.2 bits (165), Expect(4) = 7e-22
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 893 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 952
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 953 TTDERNKMSVIPYASAIGSIMYAML 977
Score = 42.0 bits (97), Expect(4) = 7e-22
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ S++ S+P H I VKN+LKY+
Sbjct: 974 YAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYL 1012
Score = 35.8 bits (81), Expect(4) = 7e-22
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ +EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 834 KALGFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLG 893
Query: 213 KRIIFL 230
+ L
Sbjct: 894 EAAYIL 899
Score = 24.6 bits (52), Expect(4) = 7e-22
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 823 RSWNIRFDEVVKA 835
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 69.3 bits (168), Expect(3) = 1e-21
Identities = 37/85 (43%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A +ILGI +++N K K++ LSQA YID + + M SKKG+L + + LSK++ PK
Sbjct: 337 GEAAHILGIKLMRNRKKKMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIXLSKDQSPK 396
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
P+E ++M+ +PYAS S+ Y +L
Sbjct: 397 TPEEIESMKAVPYASAVGSLMYAML 421
Score = 41.6 bits (96), Expect(3) = 1e-21
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDL 209
FDQ DE CVYK+ N K N + L +VK W +++F MKDL
Sbjct: 282 FDQCHDESCVYKKWNGKKVVFLVLYVDDILLIGNCIGMLTSVKDWLSQRFDMKDL 336
Score = 39.3 bits (90), Expect(3) = 1e-21
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR DI +A+G+ S+F SN H VK+++KY+
Sbjct: 418 YAMLCTRPDICFAVGMVSRFQSNXGREHWXAVKHIIKYL 456
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 68.2 bits (165), Expect(4) = 1e-20
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 744 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCPQ 803
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 804 TTDERNKMSVIPYASAIGSIMYAML 828
Score = 37.7 bits (86), Expect(4) = 1e-20
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCT D+ YA+ +++ S+P H I VKN+LKY+
Sbjct: 825 YAMLCTCPDVSYALSATNRYQSDPGESHWIAVKNILKYL 863
Score = 36.6 bits (83), Expect(4) = 1e-20
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+VL F ++ EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 685 KVLGFFKNEQEPCVYKKISGSALVFLILYVDDILLIGNDIPILESVKTLLKNSFSMKDLG 744
Query: 213 KRIIFL 230
+ L
Sbjct: 745 EAAYIL 750
Score = 24.3 bits (51), Expect(4) = 1e-20
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 1 RSWNHKFDEMIK 36
RSWN +FDE++K
Sbjct: 674 RSWNIRFDEVVK 685
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 69.3 bits (168), Expect(4) = 1e-20
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++LSK +CP+
Sbjct: 1022 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQ 1081
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M +PYAS SI Y +L
Sbjct: 1082 THDERNKMGMVPYASAIGSIMYAML 1106
Score = 39.7 bits (91), Expect(4) = 1e-20
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ S++ S+P H VKN+LKY+
Sbjct: 1103 YAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYL 1141
Score = 32.0 bits (71), Expect(4) = 1e-20
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLDKRII 224
F ++ +E CVYK+++ S N++ L +VK F MKDL +
Sbjct: 967 FIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAY 1026
Query: 225 FL 230
L
Sbjct: 1027 IL 1028
Score = 25.4 bits (54), Expect(4) = 1e-20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 1 RSWNHKFDEMIKSWFLTK 54
RSWN +FDE+IK + K
Sbjct: 952 RSWNIRFDEVIKGFGFIK 969
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 69.7 bits (169), Expect(4) = 2e-19
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ NK++ LSQ +YIDK+ + M DSKKG++ + + LSK +CP
Sbjct: 669 GEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPS 728
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E + M +IPYAS SI Y +L
Sbjct: 729 THDERERMSKIPYASAIGSIMYAML 753
Score = 36.6 bits (83), Expect(4) = 2e-19
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLDKRII 224
F ++ +EPCVYK+ + S N++ L +VK W F MKD+ +
Sbjct: 614 FIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAY 673
Query: 225 FL 230
L
Sbjct: 674 IL 675
Score = 33.9 bits (76), Expect(4) = 2e-19
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +L TR D+ A+ + S++ S+P H I+V+N+ KY+
Sbjct: 750 YAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYL 788
Score = 22.3 bits (46), Expect(4) = 2e-19
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 1 RSWNHKFDEMIKSW 42
RSWN +F+E IK +
Sbjct: 599 RSWNLRFNEAIKEF 612
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 63.2 bits (152), Expect(4) = 4e-19
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ YIDK+ + M +SK+G+L + ++LSK +CP
Sbjct: 602 GDAAYILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPT 661
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y ++
Sbjct: 662 TTDERDKMSDIPYASAIGSIMYAMI 686
Score = 40.0 bits (92), Expect(4) = 4e-19
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y ++CTR D+ YA+ + S++ ++P H VKN+LKY+
Sbjct: 683 YAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYL 721
Score = 34.3 bits (77), Expect(4) = 4e-19
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDL 209
F ++ +EPCVY +++ S N++ L +VK K F MKDL
Sbjct: 547 FIKNKEEPCVYMKVSGSTLVILILYVDDILLVGNDIPMLESVKSSLRKSFSMKDL 601
Score = 23.9 bits (50), Expect(4) = 4e-19
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 1 RSWNHKFDEMIKSWFLTK 54
RSWN +FDE IK + K
Sbjct: 532 RSWNIRFDEEIKRFGFIK 549
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 66.2 bits (160), Expect(3) = 2e-18
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 399 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 458
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 459 TTDERNKMSVIPYASAIGSIVYGML 483
Score = 37.0 bits (84), Expect(3) = 2e-18
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+VL F ++ +EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 340 KVLGFVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLG 399
Query: 213 KRIIFL 230
+ L
Sbjct: 400 EAAYIL 405
Score = 36.6 bits (83), Expect(3) = 2e-18
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQ---FLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ S+ ++ +P H I+VKN+LKY+
Sbjct: 480 YGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYL 521
>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
Length = 637
Score = 66.2 bits (160), Expect(3) = 2e-18
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 387 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 446
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 447 TTDERNKMSVIPYASAIGSIVYGML 471
Score = 37.0 bits (84), Expect(3) = 2e-18
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+VL F ++ +EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 328 KVLGFVKNEEEPCVYKKISGSTLVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLG 387
Query: 213 KRIIFL 230
+ L
Sbjct: 388 EAAYIL 393
Score = 36.6 bits (83), Expect(3) = 2e-18
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQ---FLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ S+ ++ +P H I+VKN+LKY+
Sbjct: 468 YGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYL 509
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 62.8 bits (151), Expect(4) = 2e-18
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LS+++YIDK+ + M DSKKG+L + ++L+K +C +
Sbjct: 945 GEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQ 1004
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E+ M IPYAS SI Y +L
Sbjct: 1005 TTNEQNKMSVIPYASAIGSIMYAML 1029
Score = 41.2 bits (95), Expect(4) = 2e-18
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ Y + S++ S+P H I VKN+LKY+
Sbjct: 1026 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYL 1064
Score = 30.0 bits (66), Expect(4) = 2e-18
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ + PCVYK+I+ S N++ L +V F MKDL
Sbjct: 886 KALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLG 945
Query: 213 KRIIFL 230
+ L
Sbjct: 946 EAAYIL 951
Score = 24.6 bits (52), Expect(4) = 2e-18
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 875 RSWNIRFDEVVKA 887
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 62.8 bits (151), Expect(4) = 2e-18
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LS+++YIDK+ + M DSKKG+L + ++L+K +C +
Sbjct: 887 GEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQ 946
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E+ M IPYAS SI Y +L
Sbjct: 947 TTNEQNKMSVIPYASAIGSIMYAML 971
Score = 41.2 bits (95), Expect(4) = 2e-18
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ Y + S++ S+P H I VKN+LKY+
Sbjct: 968 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYL 1006
Score = 30.0 bits (66), Expect(4) = 2e-18
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ + PCVYK+I+ S N++ L +V F MKDL
Sbjct: 828 KALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNSFSMKDLG 887
Query: 213 KRIIFL 230
+ L
Sbjct: 888 EAAYIL 893
Score = 24.6 bits (52), Expect(4) = 2e-18
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 817 RSWNIRFDEVVKA 829
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 69.7 bits (169), Expect(4) = 2e-18
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDKM + M DSKKG+L + ++L K +CP+
Sbjct: 952 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 1011
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 1012 TTDERNKMSVIPYASAIGSIMYAML 1036
Score = 35.0 bits (79), Expect(4) = 2e-18
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ +EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 893 KALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLG 952
Query: 213 KRIIFL 230
+ L
Sbjct: 953 EAAYIL 958
Score = 28.9 bits (63), Expect(4) = 2e-18
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNP 510
Y +LCTR D+ YA+ S++ S+P
Sbjct: 1033 YAMLCTRPDVSYALSATSRYQSDP 1056
Score = 25.0 bits (53), Expect(4) = 2e-18
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 882 RSWNIRFDELVKA 894
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 69.7 bits (169), Expect(4) = 2e-18
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDKM + M DSKKG+L + ++L K +CP+
Sbjct: 942 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 1001
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 1002 TTDERNKMSVIPYASAIGSIMYAML 1026
Score = 35.0 bits (79), Expect(4) = 2e-18
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ +EPCVYK+I+ S N++ L +VK F MKDL
Sbjct: 883 KALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLG 942
Query: 213 KRIIFL 230
+ L
Sbjct: 943 EAAYIL 948
Score = 28.9 bits (63), Expect(4) = 2e-18
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNP 510
Y +LCTR D+ YA+ S++ S+P
Sbjct: 1023 YAMLCTRPDVSYALSATSRYQSDP 1046
Score = 25.0 bits (53), Expect(4) = 2e-18
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 872 RSWNIRFDELVKA 884
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 67.4 bits (163), Expect(4) = 2e-17
Identities = 36/85 (42%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A +ILGI +++N K +++ LSQA YID + + M SKKG+L + + LSK++ PK
Sbjct: 989 GEAAHILGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLSKDQSPK 1048
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
P+E ++M+ +PYAS S+ Y +L
Sbjct: 1049 TPEEIESMKAVPYASAVGSLMYAML 1073
Score = 42.4 bits (98), Expect(4) = 2e-17
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR DI +A+G+ S+F SNP H VK+++KY+
Sbjct: 1070 YAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIKYL 1108
Score = 23.5 bits (49), Expect(4) = 2e-17
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSK 98
FDQ D CVYK+ N K
Sbjct: 960 FDQCHDVSCVYKKWNGKK 977
Score = 21.9 bits (45), Expect(4) = 2e-17
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 1 RSWNHKFDEMIKSW 42
RSWN FD+ IK++
Sbjct: 945 RSWNTCFDQTIKTF 958
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 68.2 bits (165), Expect(4) = 5e-17
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YI+KM + M DSKKG+LS + ++L K +CP+
Sbjct: 631 GEATYILGIRIYRDRSKRLIGLSQSTYINKMLKRFNMQDSKKGFLSMSHGINLGKNQCPQ 690
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E+ IPYAS SI Y +L
Sbjct: 691 TIDEQNKKSVIPYASAIGSIMYAML 715
Score = 34.7 bits (78), Expect(4) = 5e-17
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 45 FDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLDKRII 224
F ++ +EPCVYK+IN S N++ L + K F MKDL +
Sbjct: 576 FVKNEEEPCVYKKINRSALGFLILYVDDILLIGNDIPMLKSAKTSLKNSFSMKDLGEATY 635
Query: 225 FL 230
L
Sbjct: 636 IL 637
Score = 26.6 bits (57), Expect(4) = 5e-17
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNP 510
Y +LCTR D+ YA+ S++ +P
Sbjct: 712 YAMLCTRPDVSYALSATSRYQLDP 735
Score = 24.6 bits (52), Expect(4) = 5e-17
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 561 RSWNIRFDEVVKA 573
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 58.9 bits (141), Expect(4) = 2e-16
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 215 ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPKIP 394
A YIL I + ++ +L+ SQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 649 AAYILSIRIYRDRSRRLIG-SQSTYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCPQTT 707
Query: 395 QEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 708 DERNKMSVIPYASAIGSIMYAML 730
Score = 43.5 bits (101), Expect(4) = 2e-16
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ SQ+ S+P H I VKN+LKY+
Sbjct: 727 YAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKYL 765
Score = 25.0 bits (53), Expect(4) = 2e-16
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDS 95
+ L F ++ +EPCVYK+I+ S
Sbjct: 622 KALGFVKNEEEPCVYKKISGS 642
Score = 24.6 bits (52), Expect(4) = 2e-16
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN +FDE++K+
Sbjct: 611 RSWNIRFDEVVKA 623
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 64.3 bits (155), Expect(4) = 6e-16
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 327 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 386
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M I YAS SI Y +L
Sbjct: 387 TTDERNKMSVILYASAIGSIMYAML 411
Score = 33.5 bits (75), Expect(4) = 6e-16
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ +EPCVYK+I+ S N + L ++K F MKDL
Sbjct: 268 KALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNVIPMLESIKTSLKNSFSMKDLG 327
Query: 213 KRIIFL 230
+ L
Sbjct: 328 EAAYIL 333
Score = 28.9 bits (63), Expect(4) = 6e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNP 510
Y +LCTR D+ YA+ S++ S+P
Sbjct: 408 YAMLCTRPDVSYALSATSRYQSDP 431
Score = 23.5 bits (49), Expect(4) = 6e-16
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN FDE++K+
Sbjct: 257 RSWNIHFDEVVKA 269
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 64.3 bits (155), Expect(4) = 6e-16
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 312 GEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 371
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M I YAS SI Y +L
Sbjct: 372 TTDERNKMSVILYASAIGSIMYAML 396
Score = 33.5 bits (75), Expect(4) = 6e-16
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 33 QVLVFDQSVDEPCVYKQINDSKXXXXXXXXXXXXXXXNEVETLATVKGWFAKQFQMKDLD 212
+ L F ++ +EPCVYK+I+ S N + L ++K F MKDL
Sbjct: 253 KALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNVIPMLESIKTSLKNSFSMKDLG 312
Query: 213 KRIIFL 230
+ L
Sbjct: 313 EAAYIL 318
Score = 28.9 bits (63), Expect(4) = 6e-16
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNP 510
Y +LCTR D+ YA+ S++ S+P
Sbjct: 393 YAMLCTRPDVSYALSATSRYQSDP 416
Score = 23.5 bits (49), Expect(4) = 6e-16
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 1 RSWNHKFDEMIKS 39
RSWN FDE++K+
Sbjct: 242 RSWNIHFDEVVKA 254
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 68.2 bits (165), Expect(2) = 9e-16
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 G*ANYILGI*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VDLSKEECPK 388
G A YILGI + ++ +L+ LSQ++YIDK+ + M DSKKG+L + ++L K +CP+
Sbjct: 741 GEAAYILGIRIYKDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQ 800
Query: 389 IPQEEKNMRRIPYAST--SIQYCVL 457
E M IPYAS SI Y +L
Sbjct: 801 TTNERNKMSVIPYASAIGSIMYAML 825
Score = 42.4 bits (98), Expect(2) = 9e-16
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 439 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 555
Y +LCTR D+ YA+ SQ+ S+P H I +KN+LKY+
Sbjct: 822 YAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYL 860