BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00024918
         (542 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64710.1| putative transposase [Ipomoea tricolor]                45   3e-09
ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding sub...    44   4e-07
ref|XP_003628568.1| Replication factor A protein [Medicago trunc...    43   1e-06
ref|XP_002876822.1| hypothetical protein ARALYDRAFT_322576 [Arab...    47   3e-06

>dbj|BAF64710.1| putative transposase [Ipomoea tricolor]
          Length = 517

 Score = 45.1 bits (105), Expect(2) = 3e-09
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 315 GSFWVYSKIVAIETGADWWYVSCTK--CPRKVIPAAGDFYCENCDHFDPNGKIRY 157
           G FWV +KIV IE+  DW+YVSC    C +K+      + C+ C      G +RY
Sbjct: 291 GDFWVAAKIVGIESSWDWFYVSCKSHGCNKKLTLRNTLYDCDKCKRTWQEGILRY 345



 Score = 42.0 bits (97), Expect(2) = 3e-09
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = -2

Query: 79  RYKIKVRVVDNTGNDVFVLWDRECSE 2
           RY++KVR VD  GN  F+LWD+EC+E
Sbjct: 344 RYRVKVRAVDLDGNAPFILWDKECTE 369


>ref|XP_003595510.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
           truncatula] gi|355484558|gb|AES65761.1| Replication
           protein A 70 kDa DNA-binding subunit [Medicago
           truncatula]
          Length = 549

 Score = 43.5 bits (101), Expect(2) = 4e-07
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 309 FWVYSKIVAIETGADWWYVSCTKCPRKVIPAAGDFYCENCDHFDPNGKIRYI 154
           F V+  +  I   +DWWY SC  C +KV P    ++C  C+    N   RY+
Sbjct: 289 FAVFGTVNVIVDDSDWWYTSCVVCNKKVYPDEKMYFCSKCNKHVLNVTPRYM 340



 Score = 36.2 bits (82), Expect(2) = 4e-07
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -2

Query: 97  ILKTYDRYKIKVRVVDNTGNDVFVLWDRECSE 2
           +L    RY IK+RVVD+T +  FVL+DR+ +E
Sbjct: 332 VLNVTPRYMIKMRVVDHTDSATFVLFDRDAAE 363


>ref|XP_003628568.1| Replication factor A protein [Medicago truncatula]
           gi|355522590|gb|AET03044.1| Replication factor A protein
           [Medicago truncatula]
          Length = 559

 Score = 42.7 bits (99), Expect(2) = 1e-06
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -3

Query: 372 FYETYKPNIITNAFLYY*AGSFWVYSKIVAIETGADWWYVSCTKCPRKVIPAAGDFYCEN 193
           F   Y    I+  F     G F V + +     G +WWY +C KC R V   +G +YC+ 
Sbjct: 252 FLRMYPKKTISQLFNSEEDGFFVVSAIVSGFVEGEEWWYPAC-KCHRSVTADSGAYYCKG 310

Query: 192 CD 187
           CD
Sbjct: 311 CD 312



 Score = 35.4 bits (80), Expect(2) = 1e-06
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = -2

Query: 97  ILKTYDRYKIKVRVVDNTGNDVFVLWDRE 11
           +++   RYKIK+RV D TG+ VFVL+D +
Sbjct: 315 VIQMVPRYKIKLRVDDGTGDSVFVLFDSD 343


>ref|XP_002876822.1| hypothetical protein ARALYDRAFT_322576 [Arabidopsis lyrata subsp.
           lyrata] gi|297322660|gb|EFH53081.1| hypothetical protein
           ARALYDRAFT_322576 [Arabidopsis lyrata subsp. lyrata]
          Length = 519

 Score = 46.6 bits (109), Expect(2) = 3e-06
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
 Frame = -3

Query: 351 NIITN-AFLYY*AGSFWVYSKIVAIETGADWWYVSCTKCPRKVIP---------AAGDFY 202
           +I++N  F +   G+  + + I +I+T   W+Y+ CTKC +KV P          AG + 
Sbjct: 252 SILSNFLFFWIRGGACNIIASIFSIDTKVPWFYIGCTKCFKKVSPYFNPETEEIEAGKYE 311

Query: 201 CENCDHFDPNGKIRY 157
           CE CD F      RY
Sbjct: 312 CEKCDTFVTTTSTRY 326



 Score = 30.0 bits (66), Expect(2) = 3e-06
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 97  ILKTYDRYKIKVRVVDNTGNDVFVLWDRE 11
           +  T  RYK++  V+D+TG+  F+L+D++
Sbjct: 319 VTTTSTRYKVQATVIDHTGSASFLLFDQD 347