BLASTX nr result
ID: Rehmannia24_contig00023345
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00023345
(467 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus pe... 191 1e-46
gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlise... 184 1e-44
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 181 1e-43
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 180 2e-43
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 179 3e-43
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum] 178 8e-43
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 177 1e-42
ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, part... 177 1e-42
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 176 4e-42
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 176 4e-42
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 174 8e-42
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 173 2e-41
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 170 2e-40
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus... 169 5e-40
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr... 168 6e-40
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha... 167 2e-39
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 166 4e-39
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 164 1e-38
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 164 1e-38
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 161 1e-37
>gb|EMJ12511.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 191 bits (484), Expect = 1e-46
Identities = 87/155 (56%), Positives = 121/155 (78%), Gaps = 1/155 (0%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WVMPE+K++EF+V ECYKLE+ F +++E+ GC L G+ KV+A+LL L+ P+IF+K
Sbjct: 131 WVMPERKRVEFWVWLRDECYKLEIAFENIMESFGCRLGGE--KVNALLLKLKFGPRIFRK 188
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
ISGPNVA++F+TDRYH+CK+DFD+LWVRTTDFS++KS+GY +S CWEIEE S D++ C
Sbjct: 189 ISGPNVAARFSTDRYHVCKDDFDFLWVRTTDFSDMKSIGYSTSFCWEIEEEFSVSDVFEC 248
Query: 107 LPYY-SKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
PYY DV++L+L+ G K+ S+ VP+V SD
Sbjct: 249 FPYYKDNDVVDLILDNGEKYCSPSETVPLVKCRSD 283
>gb|EPS65825.1| hypothetical protein M569_08951, partial [Genlisea aurea]
Length = 1094
Score = 184 bits (467), Expect = 1e-44
Identities = 86/156 (55%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WV+PE+KKL F+++E E YKLE+Q+GD+ ET CC +GD +++AILL L+HAPK+F+K
Sbjct: 105 WVLPERKKLLLFLDNEEESYKLEIQYGDICETHLCCSNGDGDEINAILLKLKHAPKVFRK 164
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
ISGP+V SKF +DRY+IC +D D++WVRTTDFS KS+GY S+LC I +G ++ + T
Sbjct: 165 ISGPDVTSKFASDRYNICIQDMDFIWVRTTDFSEKKSIGYSSALCLNIPKGLNSPKLCTS 224
Query: 107 LPYYSKDVMELVLEEGVKFNHASD-LVPIVTNNSDF 3
LPY SKD+++L L+E + NH D LVP+ NNS F
Sbjct: 225 LPYMSKDLIKLSLQE-MNLNHLRDSLVPVFANNSGF 259
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca
subsp. vesca]
Length = 1136
Score = 181 bits (458), Expect = 1e-43
Identities = 80/154 (51%), Positives = 116/154 (75%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WVMPE+K++EF+V G+CYK+E+ F +++E+ GCCL GD KV+A+ L L+ PKIF++
Sbjct: 134 WVMPERKRVEFWVWRVGDCYKMEIAFENIVESVGCCLGGD--KVNALRLKLKFGPKIFRQ 191
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGPNVASKF+ DRYH+CKEDFDYLWVR TDFS +KS+G+ ++ CWEI+E + ++T
Sbjct: 192 LSGPNVASKFSADRYHVCKEDFDYLWVRCTDFSEMKSIGHSTAFCWEIQEDVAAAGVFTT 251
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
P + KDV++L+ E+G S+ VP+V +D
Sbjct: 252 FPSFRKDVVDLMFEDGGDCLLVSETVPLVKCEAD 285
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 180 bits (456), Expect = 2e-43
Identities = 87/154 (56%), Positives = 122/154 (79%), Gaps = 1/154 (0%)
Frame = -1
Query: 464 VMPEKKKLEFFVNH-EGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
+MPE+K LEF+V+H +GECY+LEVQFGD++ET C L+ D+K A+LL L+HAPK++++
Sbjct: 134 IMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLE--DEKT-ALLLKLKHAPKLYQR 190
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGP VASKF++DRYH+C+ED ++LWVRTTDFS +KS+G SS CWEIE+G + D+ +
Sbjct: 191 VSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSG 250
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
LPY + DVM+LVL+E AS+LVP+ + SD
Sbjct: 251 LPYCNNDVMDLVLDEVGDIYSASELVPLASFPSD 284
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 179 bits (454), Expect = 3e-43
Identities = 87/148 (58%), Positives = 114/148 (77%)
Frame = -1
Query: 464 VMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKKI 285
VMPE+ ++EF+V+ +GE YKLEV F DVLE+ CCL G KV+A+LL L++APKIF+K
Sbjct: 132 VMPERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGG--KVNALLLKLKYAPKIFQKF 189
Query: 284 SGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTCL 105
+GPN+ASKF+ DRYHI KED ++LW+RTTDFS++KS+G +S CWEI+EG LDI+
Sbjct: 190 AGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASF 249
Query: 104 PYYSKDVMELVLEEGVKFNHASDLVPIV 21
PYY KD+ EL LE+G F S LVP+V
Sbjct: 250 PYY-KDLTELTLEQGEGFCSDSGLVPLV 276
>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 178 bits (451), Expect = 8e-43
Identities = 83/154 (53%), Positives = 112/154 (72%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W+MPE+++LEF+V +GECYKL+ F D+ ET GCC DG +A+LL +R+AP+I++K
Sbjct: 133 WIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGS--ACNALLLRVRYAPRIYQK 190
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGPNVASKF+TDRYHICKE FD+LWVRTTDFS +KS+G +S WE G S D+ T
Sbjct: 191 VSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTY 250
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
LP Y +D+ LE +F+ S++VP+V SD
Sbjct: 251 LPCYREDIQSPSLEARREFSSPSEIVPLVKFPSD 284
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 177 bits (450), Expect = 1e-42
Identities = 76/149 (51%), Positives = 117/149 (78%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W+MPE++++EF++ HE ECYKLEV F ++LET G CL ++K++A+LL L++AP+I+KK
Sbjct: 131 WIMPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLG--EEKLNALLLKLKYAPRIYKK 188
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
ISG N+AS+F++ RY +C ED+DYLWVRTT+FS ++SVG +S CWE+EE DI++C
Sbjct: 189 ISGSNMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSC 248
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
P+Y + ++VLE+G +F S++VP++
Sbjct: 249 FPFYKETQKDIVLEDGEEFCSTSEIVPLI 277
>ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, partial [Capsella rubella]
gi|482555639|gb|EOA19831.1| hypothetical protein
CARUB_v10000076mg, partial [Capsella rubella]
Length = 1165
Score = 177 bits (449), Expect = 1e-42
Identities = 71/153 (46%), Positives = 113/153 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W++ EK+++EF+V G+CY++EV+F D++ET GCC++GD +++A LL L++ PK+FK+
Sbjct: 166 WILEEKRRVEFWVWESGDCYRIEVRFEDIVETLGCCVNGDAFEINAFLLKLKYGPKVFKR 225
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
++GP++A+KF +RY CKEDFD++W+RTTDFS KS+G + C E++ GS LDI++C
Sbjct: 226 VTGPHIATKFKPNRYCFCKEDFDFMWIRTTDFSGSKSIGISTCFCLEVDNGSEMLDIFSC 285
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNS 9
PYY KD + L + +G F A +VP++ S
Sbjct: 286 FPYYRKDTLSLTIVDGNAFASACQIVPLLNAGS 318
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 176 bits (445), Expect = 4e-42
Identities = 82/154 (53%), Positives = 111/154 (72%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W+MPE+++LEF+V +GECYKL+ F D+ ET GCC DG +A+LL +R+AP+ ++K
Sbjct: 133 WIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGS--ACNALLLRVRYAPRTYRK 190
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGPNVASKF+TDRYHICKE FD+LWVRTTDFS +KS+G +S WE G S D+ T
Sbjct: 191 VSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNAGFSISDMSTY 250
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
LP Y +D+ LE +F+ S++VP+V SD
Sbjct: 251 LPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSD 284
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 176 bits (445), Expect = 4e-42
Identities = 71/149 (47%), Positives = 111/149 (74%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W++ EK++LEF+V GECYK+EV+F D++ET CC++GD + +A LL L++ PK+FK+
Sbjct: 135 WILEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASETNAFLLKLKYGPKVFKR 194
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGP++A+KF +DRY CKEDFD++W+RTTDFS +KS+G + C E+ GS+ LD+++
Sbjct: 195 VSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFCLEVHNGSTMLDVFSG 254
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
LPYY ++ + L +G F S +VP++
Sbjct: 255 LPYYREETLSLTFVDGKNFASVSQIVPLL 283
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 174 bits (442), Expect = 8e-42
Identities = 79/154 (51%), Positives = 113/154 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W+MPE+++LEF++ + GECYKLEV F DVLET GCC +G +A+LL +++AP+I++K
Sbjct: 138 WLMPERRRLEFWLWNNGECYKLEVLFDDVLETVGCCFNGSS--CNALLLRVKYAPRIYQK 195
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGPN+ASK DRYHICKE+FD+LWVRTTDFS K+VG ++ WEI LD+++C
Sbjct: 196 VSGPNIASKLRPDRYHICKENFDFLWVRTTDFSRTKAVGQSTAFYWEINAELLTLDLFSC 255
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
Y +D+ L L+ G +F+ A ++VP+V SD
Sbjct: 256 FSCYREDMKGLTLKGGGEFSSAPEIVPLVKGPSD 289
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 173 bits (439), Expect = 2e-41
Identities = 83/153 (54%), Positives = 113/153 (73%)
Frame = -1
Query: 464 VMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKKI 285
+MPE+K LEF+V+H ECY+LEVQFGDV+E C L+ A+LL L+HAPK+++++
Sbjct: 134 IMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKS---ALLLKLKHAPKLYQRV 190
Query: 284 SGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTCL 105
SGP VASKF+ DRYHICKED ++LWVRTTDFSN+KS+G SSLCWE E+G + D+ + L
Sbjct: 191 SGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLSSL 250
Query: 104 PYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
P +KDV++L L++ S+ VP+V SD
Sbjct: 251 PCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSD 283
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum
lycopersicum]
Length = 1119
Score = 170 bits (430), Expect = 2e-40
Identities = 80/153 (52%), Positives = 113/153 (73%)
Frame = -1
Query: 464 VMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKKI 285
+MPE+K LEF+V+H ECY+LEVQFGDV E C ++ A+LL L+HAPK+++++
Sbjct: 134 IMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQKS---ALLLKLKHAPKLYQRV 190
Query: 284 SGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTCL 105
SGP VASKF+ DRYHICKED ++LW+RTTDFSN+KS+G SSLCWE E+G + D+++ L
Sbjct: 191 SGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFSSL 250
Query: 104 PYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
P ++DV++L L++ S+ VP+V SD
Sbjct: 251 PCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSD 283
>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 169 bits (427), Expect = 5e-40
Identities = 75/148 (50%), Positives = 113/148 (76%)
Frame = -1
Query: 464 VMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKKI 285
V+P+++KL+F V H+G+CY++E+ F D+LE+ G CL G + K++A+LL L+ PKI+KK
Sbjct: 132 VVPQRRKLDFLVLHDGDCYRVEIFFEDILESHGYCL-GAEGKLNALLLKLKFGPKIYKKK 190
Query: 284 SGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTCL 105
GP+VA+KF DRYH CKED ++LWVRTTDFS +KS+G+ +S CWEI E D++T L
Sbjct: 191 MGPDVATKFRNDRYHFCKEDSEFLWVRTTDFSALKSIGHSTSFCWEIAEEQLASDVFTSL 250
Query: 104 PYYSKDVMELVLEEGVKFNHASDLVPIV 21
P Y +++ +LVLE+G +F +++ VP+V
Sbjct: 251 PLYKENLRDLVLEDGEEFCSSTEAVPLV 278
>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
gi|557097970|gb|ESQ38406.1| hypothetical protein
EUTSA_v10028370mg [Eutrema salsugineum]
Length = 1124
Score = 168 bits (426), Expect = 6e-40
Identities = 71/149 (47%), Positives = 110/149 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WV+ EK+++EF+V GECYKLEV+F D++ET GCC +G + ++A L L++ PKI+KK
Sbjct: 133 WVIEEKRRVEFWVCDGGECYKLEVRFEDIVETVGCCFNGASE-INAFFLRLKYGPKIYKK 191
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+SGP++A+KF +DRY CKEDFD++W+R+TDFS +KS+G + C E+ GS+ LDI++
Sbjct: 192 VSGPHIATKFKSDRYRFCKEDFDFMWIRSTDFSGLKSIGTSNCFCLEVNNGSTTLDIFSS 251
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
PY+ +D + L +G F A+ +VP++
Sbjct: 252 FPYFREDTLSLTSVDGKTFASANQIVPLL 280
>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical
proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
2 [Arabidopsis thaliana]
Length = 1133
Score = 167 bits (422), Expect = 2e-39
Identities = 69/149 (46%), Positives = 110/149 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
W++ EK+++EF+V G+CYK+EV+F D++ET CC++GD ++DA LL L++ PK+FK+
Sbjct: 135 WILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKR 194
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
++ ++A+KF +DRY CKEDFD++W+RTTDFS KS+G + C E+ GS+ LDI++
Sbjct: 195 VT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSG 253
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
LPYY +D + L +G F A+ +VP++
Sbjct: 254 LPYYREDTLSLTYVDGKTFASAAQIVPLL 282
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 166 bits (419), Expect = 4e-39
Identities = 74/153 (48%), Positives = 112/153 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WV+P +K+L+F+V H G+CY+LE F D+LE+ G CL G+D K++A+LL ++ P+I+KK
Sbjct: 132 WVLPLRKRLDFWVWHNGDCYRLEFLFEDILESHGYCL-GEDAKLNALLLKMKFGPRIYKK 190
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+G +VA+KF DRY CKEDF++LWVRTTDFS +KS+G+ +S CWEI E LD++
Sbjct: 191 KTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVFKS 250
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIVTNNS 9
P Y +++ +L LE+G +F +++ VP+V S
Sbjct: 251 FPLYKENLRDLALEDGEEFCSSTEAVPLVKRAS 283
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 164 bits (415), Expect = 1e-38
Identities = 80/155 (51%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGEC-YKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFK 291
W MPE++++EF++ E YKL V+F D+LE G LDGD KV+A++L LR+ P+I++
Sbjct: 132 WFMPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGD--KVNAVVLKLRYGPRIYQ 189
Query: 290 KISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYT 111
KISGP +ASKF+T+RY CKEDFD+LWVRTTD S +KS+G +S CWEI EG D +
Sbjct: 190 KISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFR 249
Query: 110 CLPYYSKDVMELVLEEGVKFNHASDLVPIVTNNSD 6
PYY +D+ L LE+G +F AS+ VP++ SD
Sbjct: 250 NFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD 284
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 164 bits (414), Expect = 1e-38
Identities = 71/149 (47%), Positives = 109/149 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WVMPE+ +L+F+V H +C+KLE+ F ++LE G DG K +A+LL L++ P+I+++
Sbjct: 133 WVMPERNRLDFWVTHHDQCFKLEIPFENILECDGFSSDGS--KPNALLLKLKYGPRIYQR 190
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
+ GPNV++KF DRY CKEDF ++WVRTTDFS +KS+G+ +S CWEIEE SS+ D++
Sbjct: 191 MEGPNVSAKFKADRYRFCKEDFAFMWVRTTDFSRLKSIGHSTSFCWEIEEESSDSDVFRS 250
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
P Y +++ +L LE+G +F ++ VP+V
Sbjct: 251 FPLYRENLKDLSLEDGEEFCSPTETVPLV 279
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 161 bits (407), Expect = 1e-37
Identities = 71/149 (47%), Positives = 110/149 (73%)
Frame = -1
Query: 467 WVMPEKKKLEFFVNHEGECYKLEVQFGDVLETRGCCLDGDDKKVDAILLTLRHAPKIFKK 288
WVMPE+++L+F+V H +C+KLE+ F ++LE G C D + K +A+LL LR+ P+I++K
Sbjct: 133 WVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSD-EGSKPNALLLKLRYGPRIYQK 191
Query: 287 ISGPNVASKFTTDRYHICKEDFDYLWVRTTDFSNVKSVGYLSSLCWEIEEGSSNLDIYTC 108
++GPNVA+KF DRY CKE+F+++WVRTTDFS +KS+G+ +S WEI E S + D++
Sbjct: 192 MAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRS 251
Query: 107 LPYYSKDVMELVLEEGVKFNHASDLVPIV 21
P Y +++ +L LE+G KF ++ VP+V
Sbjct: 252 FPLYRENLKDLSLEDGEKFCSPTETVPLV 280