BLASTX nr result
ID: Rehmannia24_contig00023315
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00023315
(659 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 112 8e-23
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig... 109 8e-22
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 105 1e-20
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 104 3e-20
sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymeras... 103 3e-20
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ... 103 3e-20
ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana toment... 103 3e-20
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 103 5e-20
sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymeras... 102 8e-20
ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacu... 102 8e-20
prf||1211235K rpoC-like ORF 862 102 8e-20
gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bart... 101 2e-19
ref|YP_635629.1| RNA polymerase beta'' subunit [Solanum tuberosu... 101 2e-19
ref|YP_538838.1| RNA polymerase beta'' subunit [Solanum bulbocas... 101 2e-19
ref|YP_008563078.1| RNA polymerase beta' subunit (chloroplast) [... 101 2e-19
sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymeras... 101 2e-19
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras... 101 2e-19
gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datu... 101 2e-19
ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ... 101 2e-19
ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) ... 101 2e-19
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
(chloroplast) [Sesamum indicum]
gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
indicum]
Length = 1390
Score = 112 bits (281), Expect = 8e-23
Identities = 52/54 (96%), Positives = 52/54 (96%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHNK PLETKKNNLFEGE RDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS
Sbjct: 1337 SKQHNKGPLETKKNNLFEGETRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 1390
>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare subsp.
vulgare]
Length = 1397
Score = 109 bits (272), Expect = 8e-22
Identities = 52/57 (91%), Positives = 54/57 (94%), Gaps = 2/57 (3%)
Frame = -2
Query: 310 TSKQHNKSPLE--TKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
+SKQHN+SPLE TKKNNLFEGEMRDILFHHRKLFDSF SKNFHDRPEQSFIGFNDS
Sbjct: 1341 SSKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLFDSFFSKNFHDRPEQSFIGFNDS 1397
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
(chloroplast) [Salvia miltiorrhiza]
gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
subunit (chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 105 bits (262), Expect = 1e-20
Identities = 50/56 (89%), Positives = 52/56 (92%), Gaps = 2/56 (3%)
Frame = -2
Query: 307 SKQHNKSPLE--TKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN+SPLE TKKNNLFEGEMRDILFHHRKLFDS SKNFHDRPEQ+FIGFNDS
Sbjct: 1340 SKQHNRSPLEMETKKNNLFEGEMRDILFHHRKLFDSLFSKNFHDRPEQAFIGFNDS 1395
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 104 bits (259), Expect = 3e-20
Identities = 51/56 (91%), Positives = 52/56 (92%), Gaps = 2/56 (3%)
Frame = -2
Query: 307 SKQHNKSPLE--TKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN+SPLE TKKNNLFEGE RDILFHHRKLFDSFLSKNFHDR EQSFIGFNDS
Sbjct: 1340 SKQHNRSPLEMETKKNNLFEGETRDILFHHRKLFDSFLSKNFHDRLEQSFIGFNDS 1395
>sp|Q33C48.1|RPOC2_NICTO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|80750911|dbj|BAE47987.1| RNA polymerase beta'' subunit
[Nicotiana tomentosiformis]
Length = 1392
Score = 103 bits (258), Expect = 3e-20
Identities = 49/54 (90%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
gi|347453891|gb|AEO95549.1| RNA polymerase beta'' subunit
(chloroplast) [Nicotiana undulata]
gi|347454002|gb|AEO95659.1| RNA polymerase beta'' subunit
[synthetic construct]
Length = 1392
Score = 103 bits (258), Expect = 3e-20
Identities = 49/54 (90%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|YP_398849.2| RNA polymerase beta'' subunit [Nicotiana tomentosiformis]
Length = 1388
Score = 103 bits (258), Expect = 3e-20
Identities = 49/54 (90%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKNFHDIPEQSFIGFNDS 1388
>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit
(chloroplast) [Boea hygrometrica]
Length = 1381
Score = 103 bits (257), Expect = 5e-20
Identities = 47/54 (87%), Positives = 51/54 (94%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHNKSPL+TKK+NLFEGEMRDILFHH++LFDSFLSKNFHD EQ FIGFNDS
Sbjct: 1328 SKQHNKSPLQTKKDNLFEGEMRDILFHHKRLFDSFLSKNFHDTSEQLFIGFNDS 1381
>sp|Q3C1G9.1|RPOC2_NICSY RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|239977080|sp|P38550.2|RPOC2_TOBAC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|2924258|emb|CAA77410.1| RNA polymerase beta'' subunit
[Nicotiana tabacum] gi|77799548|dbj|BAE46637.1| RNA
polymerase beta'' subunit [Nicotiana sylvestris]
Length = 1392
Score = 102 bits (255), Expect = 8e-20
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKNLFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 1392
>ref|NP_054486.2| RNA polymerase beta'' subunit [Nicotiana tabacum]
gi|126165910|ref|YP_358662.2| RNA polymerase beta''
subunit [Nicotiana sylvestris]
Length = 1388
Score = 102 bits (255), Expect = 8e-20
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKNLFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 1388
>prf||1211235K rpoC-like ORF 862
Length = 862
Score = 102 bits (255), Expect = 8e-20
Identities = 48/54 (88%), Positives = 49/54 (90%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHH+KLFDS LSKNFHD PEQSFIGFNDS
Sbjct: 809 SKQHNNIPLETKKKNLFEGEMRDILFHHKKLFDSCLSKNFHDIPEQSFIGFNDS 862
>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bartsia inaequalis]
Length = 1384
Score = 101 bits (252), Expect = 2e-19
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
S++HNKSPLETK NNLFEGEM DILF+HRK FDSFLSKNFHDR EQSF+GFNDS
Sbjct: 1331 SQEHNKSPLETKNNNLFEGEMGDILFYHRKFFDSFLSKNFHDRSEQSFLGFNDS 1384
>ref|YP_635629.1| RNA polymerase beta'' subunit [Solanum tuberosum]
gi|88656794|gb|ABD47047.1| RNA polymerase beta' subunit
[Solanum tuberosum]
Length = 1392
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKTNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>ref|YP_538838.1| RNA polymerase beta'' subunit [Solanum bulbocastanum]
gi|122201835|sp|Q2MIJ7.1|RPOC2_SOLBU RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371885|gb|ABC56203.1| RNA polymerase beta' subunit
[Solanum bulbocastanum]
Length = 1392
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKTNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>ref|YP_008563078.1| RNA polymerase beta' subunit (chloroplast) [Solanum lycopersicum]
gi|544170661|ref|AP_004918.1| RNA polymerase beta'' chain
(chloroplast) [Solanum lycopersicum]
gi|122201793|sp|Q2MIB0.1|RPOC2_SOLLC RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|84371973|gb|ABC56290.1| RNA polymerase beta' subunit
(chloroplast) [Solanum lycopersicum]
gi|89241661|emb|CAJ32383.1| RNA polymerase beta'' chain
[Solanum lycopersicum]
Length = 1392
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKTNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>sp|Q2VEI6.1|RPOC2_SOLTU RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|82754619|gb|ABB90033.1| RNA polymerase beta II chain
[Solanum tuberosum]
Length = 1392
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKTNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|20068321|emb|CAC88034.1| RNA polymerase beta II
subunit [Atropa belladonna]
Length = 1389
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1336 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1389
>gb|AEQ36928.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
Length = 1388
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1388
>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
gi|401065922|gb|AFP90766.1| RNA polymerase beta'' subunit
(chloroplast) [Capsicum annuum]
Length = 1392
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1339 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1392
>ref|YP_006503781.1| RNA polymerase beta subunit-2 (chloroplast) [Datura stramonium]
gi|350996503|gb|AEQ37014.1| RNA polymerase beta subunit-2
[Datura stramonium]
Length = 1388
Score = 101 bits (252), Expect = 2e-19
Identities = 48/54 (88%), Positives = 48/54 (88%)
Frame = -2
Query: 307 SKQHNKSPLETKKNNLFEGEMRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 146
SKQHN PLETKK NLFEGEMRDILFHHRKLFDS LSK FHD PEQSFIGFNDS
Sbjct: 1335 SKQHNNIPLETKKKNLFEGEMRDILFHHRKLFDSCLSKKFHDIPEQSFIGFNDS 1388