BLASTX nr result
ID: Rehmannia24_contig00021616
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00021616
(366 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006428878.1| hypothetical protein CICLE_v10011148mg [Citr... 93 3e-17
gb|EMJ07627.1| hypothetical protein PRUPE_ppa001926mg [Prunus pe... 89 6e-16
emb|CBI32614.3| unnamed protein product [Vitis vinifera] 88 1e-15
ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|XP_006361774.1| PREDICTED: pentatricopeptide repeat-containi... 84 1e-14
ref|XP_004306228.1| PREDICTED: pentatricopeptide repeat-containi... 84 2e-14
ref|XP_002322855.2| hypothetical protein POPTR_0016s08650g [Popu... 83 3e-14
ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containi... 81 1e-13
gb|EOY07747.1| Tetratricopeptide repeat (TPR)-like superfamily p... 79 5e-13
gb|EXC16278.1| hypothetical protein L484_024452 [Morus notabilis] 79 8e-13
ref|XP_002525184.1| pentatricopeptide repeat-containing protein,... 78 1e-12
gb|EPS62297.1| hypothetical protein M569_12494, partial [Genlise... 76 4e-12
ref|XP_004497462.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_004497461.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containi... 75 9e-12
ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi... 74 2e-11
ref|NP_187576.1| RNA binding protein HCF152 [Arabidopsis thalian... 74 2e-11
dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana] 74 2e-11
gb|ESW16523.1| hypothetical protein PHAVU_007G163500g [Phaseolus... 71 1e-10
ref|XP_006407654.1| hypothetical protein EUTSA_v10020113mg [Eutr... 71 1e-10
>ref|XP_006428878.1| hypothetical protein CICLE_v10011148mg [Citrus clementina]
gi|568853953|ref|XP_006480600.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Citrus sinensis]
gi|557530935|gb|ESR42118.1| hypothetical protein
CICLE_v10011148mg [Citrus clementina]
Length = 740
Score = 93.2 bits (230), Expect = 3e-17
Identities = 52/117 (44%), Positives = 67/117 (57%)
Frame = -1
Query: 351 PAMNATHTLSLHWVAPPPPSSTALFVXXXXXXXXXXXXXXSFRVQTAKNPSNASLSSATP 172
P+ H LS H V+PPPP+ FRVQ + S + + ++
Sbjct: 11 PSSLTHHALSPHCVSPPPPTPP-------------YPPTRPFRVQATTDLSLTTTNPSSN 57
Query: 171 SNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEGLT 1
SN ++ ++LLTLL+QRKTEEAW+ Y Q LPNPTCLSRLVSQLSY NTT L+
Sbjct: 58 SNNNTNDDQKILLTLLRQRKTEEAWIKYTQSTYLPNPTCLSRLVSQLSYQNTTLSLS 114
>gb|EMJ07627.1| hypothetical protein PRUPE_ppa001926mg [Prunus persica]
Length = 740
Score = 89.0 bits (219), Expect = 6e-16
Identities = 54/122 (44%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Frame = -1
Query: 360 SNGPAMNATHTLSLHWVAPPP-PSSTALFVXXXXXXXXXXXXXXSFRV-QTAKNPSNASL 187
SN P +L+LHWV+ P PSS + FR+ TA P+N +
Sbjct: 15 SNNPFPATHSSLTLHWVSSPHYPSSIS-------------SPTRPFRLLATANPPTNPTS 61
Query: 186 SSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEG 7
+ + ++DQ LLTLL+QRKTEEAW+ Y Q LPNPTCLSRL+SQLSY N+ G
Sbjct: 62 DLSLAATAALPNEDQKLLTLLRQRKTEEAWIAYTQSTHLPNPTCLSRLLSQLSYQNSHSG 121
Query: 6 LT 1
LT
Sbjct: 122 LT 123
>emb|CBI32614.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 87.8 bits (216), Expect = 1e-15
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = -1
Query: 207 NPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLS 28
NP++ S + T + S +Q LLTLL+QRKTEEAWL Y QC QLP+PTCLSRLVSQLS
Sbjct: 69 NPTSVSFITTTTATTPHHSLNQTLLTLLRQRKTEEAWLTYVQCTQLPSPTCLSRLVSQLS 128
Query: 27 YLNTTEGLT 1
Y NT + LT
Sbjct: 129 YQNTHQALT 137
>ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Vitis vinifera]
Length = 749
Score = 87.8 bits (216), Expect = 1e-15
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = -1
Query: 207 NPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLS 28
NP++ S + T + S +Q LLTLL+QRKTEEAWL Y QC QLP+PTCLSRLVSQLS
Sbjct: 61 NPTSVSFITTTTATTPHHSLNQTLLTLLRQRKTEEAWLTYVQCTQLPSPTCLSRLVSQLS 120
Query: 27 YLNTTEGLT 1
Y NT + LT
Sbjct: 121 YQNTHQALT 129
>ref|XP_006361774.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Solanum tuberosum]
Length = 738
Score = 84.3 bits (207), Expect = 1e-14
Identities = 47/77 (61%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Frame = -1
Query: 228 FRVQTAKNPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQ--CAQLPNPTC 55
F+ NPSN + S T N FS+S D LLTLLQQRKT+EAWL Y + QLPNPTC
Sbjct: 44 FQPHPTSNPSNPT-SLITSKNSFSASPDNTLLTLLQQRKTDEAWLYYTKNLDQQLPNPTC 102
Query: 54 LSRLVSQLSYLNTTEGL 4
LSRLVSQLSY N+T L
Sbjct: 103 LSRLVSQLSYQNSTISL 119
>ref|XP_004306228.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 743
Score = 84.0 bits (206), Expect = 2e-14
Identities = 49/121 (40%), Positives = 61/121 (50%), Gaps = 19/121 (15%)
Frame = -1
Query: 306 PPPPSSTALFVXXXXXXXXXXXXXXSFRVQTAKNPSNASLSSATPSNKFS---------- 157
PPPPS A + T P +++TP+N +
Sbjct: 6 PPPPSPLASISNPLSHSLTLHRVSFPSSISTPTRPFRLHATASTPANPAADFTLTTVTAA 65
Query: 156 ---------SSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEGL 4
S++DQ LLTLL+QRKTEEAW+LY Q + LPNPTCLSRL+SQLSY NT L
Sbjct: 66 DDDDGDTPVSNEDQKLLTLLRQRKTEEAWILYTQYSHLPNPTCLSRLLSQLSYQNTRTSL 125
Query: 3 T 1
T
Sbjct: 126 T 126
>ref|XP_002322855.2| hypothetical protein POPTR_0016s08650g [Populus trichocarpa]
gi|550321129|gb|EEF04616.2| hypothetical protein
POPTR_0016s08650g [Populus trichocarpa]
Length = 724
Score = 83.2 bits (204), Expect = 3e-14
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Frame = -1
Query: 207 NPSNASLSSAT--PSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQ 34
NP+ LS AT P++ SSS DQ LL+LL+QRKTEEAW+LY Q LP PTCLSRLVSQ
Sbjct: 27 NPTTKDLSLATSIPTSITSSSNDQTLLSLLRQRKTEEAWVLYTQTPHLPPPTCLSRLVSQ 86
Query: 33 LSYLNT 16
LSY NT
Sbjct: 87 LSYQNT 92
>ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
gi|449483612|ref|XP_004156638.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Cucumis sativus]
Length = 736
Score = 81.3 bits (199), Expect = 1e-13
Identities = 43/72 (59%), Positives = 52/72 (72%)
Frame = -1
Query: 216 TAKNPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVS 37
TA+ S+ LS + S+ SSS +Q LL LL+QRKT+EAW+ Y QC LP+PTCLSRLVS
Sbjct: 47 TARRTSSTDLSLLSDSS--SSSLEQRLLLLLRQRKTDEAWITYTQCNDLPSPTCLSRLVS 104
Query: 36 QLSYLNTTEGLT 1
QLSY NT LT
Sbjct: 105 QLSYQNTPSSLT 116
>gb|EOY07747.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 758
Score = 79.3 bits (194), Expect = 5e-13
Identities = 43/108 (39%), Positives = 59/108 (54%)
Frame = -1
Query: 324 SLHWVAPPPPSSTALFVXXXXXXXXXXXXXXSFRVQTAKNPSNASLSSATPSNKFSSSQD 145
+LHW++PPPPS+T R++ + + + S ++ D
Sbjct: 27 TLHWLSPPPPSATTATTTSKPARLC--------RLEATAHQQTQPTADFSLSTDRKTNND 78
Query: 144 QVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEGLT 1
Q LL+LL+QRKTE+AW Y+Q LP PTCLSRLV+QLSY T LT
Sbjct: 79 QTLLSLLRQRKTEQAWDHYSQSPHLPTPTCLSRLVAQLSYQTTPLSLT 126
>gb|EXC16278.1| hypothetical protein L484_024452 [Morus notabilis]
Length = 749
Score = 78.6 bits (192), Expect = 8e-13
Identities = 43/75 (57%), Positives = 51/75 (68%)
Frame = -1
Query: 225 RVQTAKNPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSR 46
R+Q + N SN + + + S K SQDQ LL LL+QRKTEEAWL Y + LP+ TCLSR
Sbjct: 48 RIQASTN-SNTNTNLSLSSTKQPISQDQALLYLLRQRKTEEAWLAYTHSSHLPSSTCLSR 106
Query: 45 LVSQLSYLNTTEGLT 1
LVSQLSY NT LT
Sbjct: 107 LVSQLSYQNTHVSLT 121
>ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535481|gb|EEF37150.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 740
Score = 78.2 bits (191), Expect = 1e-12
Identities = 49/119 (41%), Positives = 71/119 (59%)
Frame = -1
Query: 357 NGPAMNATHTLSLHWVAPPPPSSTALFVXXXXXXXXXXXXXXSFRVQTAKNPSNASLSSA 178
N P +++ + SL ++PP P + +L + FR+ TA P + SL++A
Sbjct: 3 NPPLPSSSSSCSLSPLSPPYPLAHSLTLLHWPTKKPTRQ----FRLYTATTP-DLSLTTA 57
Query: 177 TPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEGLT 1
T + DQ LL+LL+QR+T++AW+ Y+Q LPNPTCLSRLVSQLSY NT L+
Sbjct: 58 T-------NNDQTLLSLLRQRETDKAWIFYSQSPLLPNPTCLSRLVSQLSYQNTPLSLS 109
>gb|EPS62297.1| hypothetical protein M569_12494, partial [Genlisea aurea]
Length = 675
Score = 76.3 bits (186), Expect = 4e-12
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = -1
Query: 159 SSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNTTEGL 4
S+SQD+ LL+LLQQRKTEEAW LY Q LPN TCLSRLV+QLS+ T EGL
Sbjct: 1 SASQDKKLLSLLQQRKTEEAWALYVQSGHLPNSTCLSRLVAQLSFQKTAEGL 52
>ref|XP_004497462.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like isoform X2 [Cicer arietinum]
Length = 732
Score = 75.5 bits (184), Expect = 7e-12
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = -1
Query: 207 NPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLS 28
NPS+ ++++ N + +DQ LLTLLQQRK EEAWL LPNPTCLSRLVSQLS
Sbjct: 36 NPSDTTITT----NSKTEPRDQKLLTLLQQRKKEEAWLXXTLSTHLPNPTCLSRLVSQLS 91
Query: 27 YLNTTEGLT 1
Y NT LT
Sbjct: 92 YHNTPSSLT 100
>ref|XP_004497461.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like isoform X1 [Cicer arietinum]
Length = 732
Score = 75.5 bits (184), Expect = 7e-12
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = -1
Query: 207 NPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLS 28
NPS+ ++++ N + +DQ LLTLLQQRK EEAWL LPNPTCLSRLVSQLS
Sbjct: 36 NPSDTTITT----NSKTEPRDQKLLTLLQQRKKEEAWLAXTLSTHLPNPTCLSRLVSQLS 91
Query: 27 YLNTTEGLT 1
Y NT LT
Sbjct: 92 YHNTPSSLT 100
>ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Glycine max]
Length = 716
Score = 75.1 bits (183), Expect = 9e-12
Identities = 40/72 (55%), Positives = 46/72 (63%)
Frame = -1
Query: 216 TAKNPSNASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVS 37
T P + AT +N +DQ LL+LL+ RKTEEAWL Y+ LPNPTCLSRLVS
Sbjct: 4 TLLQPPLSPFQRATTTNS-PEPRDQKLLSLLRDRKTEEAWLAYSHSTHLPNPTCLSRLVS 62
Query: 36 QLSYLNTTEGLT 1
QLSY NT LT
Sbjct: 63 QLSYQNTLSSLT 74
>ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata
subsp. lyrata]
Length = 772
Score = 74.3 bits (181), Expect = 2e-11
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -1
Query: 207 NPSNASLSS--ATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQ 34
N S LSS +PS +S+ DQ LL LL+ RKT+EAW Y Q LP PTCLSRLVSQ
Sbjct: 56 NSSAGDLSSFLGSPSEAYSTHNDQELLFLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQ 115
Query: 33 LSYLNTTEGLT 1
LSY + E LT
Sbjct: 116 LSYQSKPESLT 126
>ref|NP_187576.1| RNA binding protein HCF152 [Arabidopsis thaliana]
gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g09650, chloroplastic; AltName: Full=Protein HIGH
CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical
protein [Arabidopsis thaliana]
gi|332641272|gb|AEE74793.1| RNA binding protein HCF152
[Arabidopsis thaliana]
Length = 778
Score = 73.9 bits (180), Expect = 2e-11
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -1
Query: 207 NPSNASLSS--ATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQ 34
N S LSS +PS +S+ DQ LL LL+ RKT+EAW Y Q LP PTCLSRLVSQ
Sbjct: 63 NSSAEDLSSFLGSPSEAYSTHNDQELLFLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQ 122
Query: 33 LSYLNTTEGLT 1
LSY + E LT
Sbjct: 123 LSYQSKPESLT 133
>dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]
Length = 778
Score = 73.9 bits (180), Expect = 2e-11
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -1
Query: 207 NPSNASLSS--ATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQ 34
N S LSS +PS +S+ DQ LL LL+ RKT+EAW Y Q LP PTCLSRLVSQ
Sbjct: 63 NSSAEDLSSFLGSPSEAYSTHNDQELLFLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQ 122
Query: 33 LSYLNTTEGLT 1
LSY + E LT
Sbjct: 123 LSYQSKPESLT 133
>gb|ESW16523.1| hypothetical protein PHAVU_007G163500g [Phaseolus vulgaris]
Length = 713
Score = 71.2 bits (173), Expect = 1e-10
Identities = 38/65 (58%), Positives = 44/65 (67%)
Frame = -1
Query: 195 ASLSSATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQLSYLNT 16
A++S A P +DQ LL+LL++RKTEEAW Y LPNPTCLSRLVSQLSY NT
Sbjct: 17 AAISIAEP-------RDQKLLSLLRERKTEEAWNAYTHSTHLPNPTCLSRLVSQLSYQNT 69
Query: 15 TEGLT 1
LT
Sbjct: 70 LSSLT 74
>ref|XP_006407654.1| hypothetical protein EUTSA_v10020113mg [Eutrema salsugineum]
gi|557108800|gb|ESQ49107.1| hypothetical protein
EUTSA_v10020113mg [Eutrema salsugineum]
Length = 777
Score = 71.2 bits (173), Expect = 1e-10
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = -1
Query: 207 NPSNASLSS--ATPSNKFSSSQDQVLLTLLQQRKTEEAWLLYAQCAQLPNPTCLSRLVSQ 34
N S LSS + S +S+ DQ LL+LL+ RKT+EAW Y Q LP PTCLSRLVSQ
Sbjct: 62 NSSAGDLSSFLGSSSEPYSTHNDQELLSLLRNRKTDEAWAKYVQSTHLPGPTCLSRLVSQ 121
Query: 33 LSYLNTTEGLT 1
LSY + + LT
Sbjct: 122 LSYQSKPDSLT 132